Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536110 | XP_013454526.1 | 79.211 | 380 | 8 | 5 | 1 | 316 | 1 | 373 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536110 | A0A072UFU8 | 79.211 | 380 | 8 | 5 | 1 | 316 | 1 | 373 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0536110 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536110 | MtrunA17_Chr4g0001831 | 79.211 | 380 | 8 | 5 | 1 | 316 | 1 | 373 | 0.0 | 566 |
| Msa0536110 | MtrunA17_Chr2g0286191 | 30.411 | 365 | 180 | 8 | 14 | 314 | 6 | 360 | 5.70e-37 | 135 |
| Msa0536110 | MtrunA17_Chr4g0067671 | 27.492 | 331 | 174 | 7 | 27 | 296 | 30 | 355 | 1.92e-30 | 118 |
| Msa0536110 | MtrunA17_Chr2g0296301 | 26.444 | 329 | 181 | 7 | 43 | 310 | 35 | 363 | 9.01e-28 | 111 |
| Msa0536110 | MtrunA17_Chr4g0067141 | 26.724 | 348 | 181 | 8 | 33 | 315 | 36 | 374 | 2.52e-27 | 109 |
| Msa0536110 | MtrunA17_Chr4g0067121 | 28.529 | 333 | 166 | 10 | 45 | 311 | 52 | 378 | 1.34e-26 | 108 |
| Msa0536110 | MtrunA17_Chr2g0295761 | 27.168 | 346 | 168 | 9 | 36 | 310 | 54 | 386 | 4.23e-23 | 98.2 |
| Msa0536110 | MtrunA17_Chr2g0296121 | 26.912 | 353 | 192 | 9 | 22 | 311 | 105 | 454 | 1.98e-22 | 97.1 |
| Msa0536110 | MtrunA17_Chr2g0296191 | 26.902 | 368 | 192 | 10 | 11 | 311 | 151 | 508 | 1.76e-21 | 95.1 |
| Msa0536110 | MtrunA17_Chr2g0296191 | 26.816 | 358 | 188 | 10 | 24 | 310 | 640 | 994 | 5.76e-20 | 90.9 |
| Msa0536110 | MtrunA17_Chr2g0296181 | 27.811 | 338 | 185 | 12 | 22 | 311 | 29 | 355 | 2.37e-21 | 93.6 |
| Msa0536110 | MtrunA17_Chr2g0296111 | 29.966 | 297 | 155 | 13 | 13 | 267 | 9 | 294 | 5.42e-20 | 89.4 |
| Msa0536110 | MtrunA17_Chr2g0296151 | 27.157 | 313 | 179 | 9 | 11 | 279 | 5 | 312 | 9.16e-20 | 89.0 |
| Msa0536110 | MtrunA17_Chr2g0295731 | 28.671 | 286 | 163 | 8 | 17 | 267 | 21 | 300 | 3.19e-19 | 87.4 |
| Msa0536110 | MtrunA17_Chr2g0296231 | 27.413 | 259 | 147 | 7 | 46 | 267 | 51 | 305 | 7.31e-19 | 86.3 |
| Msa0536110 | MtrunA17_Chr2g0296711 | 28.958 | 259 | 143 | 9 | 46 | 267 | 55 | 309 | 1.37e-18 | 85.9 |
| Msa0536110 | MtrunA17_Chr2g0296221 | 27.778 | 288 | 163 | 10 | 22 | 267 | 53 | 337 | 8.03e-18 | 83.6 |
| Msa0536110 | MtrunA17_Chr2g0296291 | 24.267 | 375 | 177 | 9 | 39 | 311 | 27 | 396 | 1.35e-17 | 82.8 |
| Msa0536110 | MtrunA17_Chr2g0296251 | 26.230 | 305 | 147 | 10 | 35 | 267 | 23 | 321 | 6.02e-17 | 80.9 |
| Msa0536110 | MtrunA17_Chr2g0296171 | 24.802 | 379 | 205 | 11 | 15 | 316 | 23 | 398 | 8.80e-17 | 80.5 |
| Msa0536110 | MtrunA17_Chr2g0296741 | 25.510 | 294 | 174 | 8 | 15 | 267 | 37 | 326 | 1.02e-16 | 80.1 |
| Msa0536110 | MtrunA17_Chr2g0296721 | 27.645 | 293 | 168 | 9 | 15 | 267 | 17 | 305 | 1.78e-16 | 79.3 |
| Msa0536110 | MtrunA17_Chr2g0315731 | 28.041 | 296 | 164 | 12 | 15 | 267 | 37 | 326 | 4.50e-16 | 78.2 |
| Msa0536110 | MtrunA17_Chr2g0295741 | 24.507 | 355 | 192 | 10 | 24 | 311 | 29 | 374 | 7.41e-16 | 77.4 |
| Msa0536110 | MtrunA17_Chr2g0286221 | 28.750 | 160 | 70 | 3 | 199 | 315 | 13 | 171 | 2.84e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536110 | AT5G07900.1 | 32.011 | 378 | 175 | 7 | 14 | 310 | 23 | 399 | 1.11e-52 | 178 |
| Msa0536110 | AT1G21150.1 | 30.347 | 346 | 193 | 8 | 10 | 316 | 17 | 353 | 1.71e-31 | 122 |
| Msa0536110 | AT1G21150.2 | 30.347 | 346 | 193 | 8 | 10 | 316 | 81 | 417 | 4.20e-31 | 121 |
| Msa0536110 | AT1G21150.3 | 31.250 | 304 | 165 | 7 | 48 | 316 | 23 | 317 | 1.45e-29 | 115 |
| Msa0536110 | AT3G46950.1 | 28.475 | 295 | 170 | 9 | 14 | 276 | 18 | 303 | 2.17e-20 | 91.7 |
| Msa0536110 | AT1G61980.3 | 27.888 | 251 | 150 | 5 | 41 | 261 | 48 | 297 | 1.05e-19 | 89.4 |
| Msa0536110 | AT1G61980.2 | 27.888 | 251 | 150 | 5 | 41 | 261 | 48 | 297 | 1.05e-19 | 89.4 |
| Msa0536110 | AT1G61980.1 | 27.888 | 251 | 150 | 5 | 41 | 261 | 48 | 297 | 1.05e-19 | 89.4 |
| Msa0536110 | AT1G62120.1 | 27.027 | 259 | 156 | 4 | 35 | 261 | 46 | 303 | 1.21e-18 | 86.3 |
| Msa0536110 | AT1G61960.1 | 29.412 | 272 | 154 | 8 | 27 | 263 | 32 | 300 | 1.39e-18 | 86.3 |
| Msa0536110 | AT1G62150.1 | 27.203 | 261 | 157 | 5 | 35 | 263 | 48 | 307 | 2.72e-18 | 85.5 |
| Msa0536110 | AT1G61970.2 | 27.451 | 255 | 146 | 7 | 41 | 261 | 48 | 297 | 6.31e-18 | 84.3 |
| Msa0536110 | AT1G61970.7 | 27.451 | 255 | 146 | 7 | 41 | 261 | 48 | 297 | 6.31e-18 | 84.3 |
| Msa0536110 | AT1G61970.6 | 27.451 | 255 | 146 | 7 | 41 | 261 | 48 | 297 | 6.31e-18 | 84.3 |
| Msa0536110 | AT1G61970.3 | 27.451 | 255 | 146 | 7 | 41 | 261 | 48 | 297 | 6.31e-18 | 84.3 |
| Msa0536110 | AT1G61970.5 | 27.451 | 255 | 146 | 7 | 41 | 261 | 48 | 297 | 6.31e-18 | 84.3 |
| Msa0536110 | AT1G61970.4 | 27.451 | 255 | 146 | 7 | 41 | 261 | 48 | 297 | 6.31e-18 | 84.3 |
| Msa0536110 | AT1G61970.1 | 27.451 | 255 | 146 | 7 | 41 | 261 | 48 | 297 | 6.31e-18 | 84.3 |
| Msa0536110 | AT1G62110.1 | 26.460 | 291 | 179 | 5 | 35 | 292 | 42 | 330 | 1.98e-17 | 82.8 |
| Msa0536110 | AT1G62085.1 | 26.984 | 315 | 189 | 8 | 22 | 297 | 26 | 338 | 4.34e-17 | 82.0 |
| Msa0536110 | AT1G62085.2 | 26.984 | 315 | 189 | 8 | 22 | 297 | 26 | 338 | 4.34e-17 | 82.0 |
| Msa0536110 | AT1G61990.2 | 27.953 | 254 | 151 | 7 | 35 | 261 | 42 | 290 | 1.15e-16 | 80.5 |
| Msa0536110 | AT1G61990.1 | 27.953 | 254 | 151 | 7 | 35 | 261 | 42 | 290 | 1.15e-16 | 80.5 |
| Msa0536110 | AT5G23930.1 | 26.722 | 363 | 175 | 14 | 7 | 307 | 12 | 345 | 7.95e-14 | 72.0 |
| Msa0536110 | AT1G62010.1 | 26.446 | 242 | 151 | 6 | 42 | 261 | 45 | 281 | 6.63e-12 | 66.2 |
Find 52 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACCTTGTTGAAAGTTTA+AGG | 0.085452 | 4_1:-12911671 | None:intergenic |
| GAAAGATTTGCCATTGTTAT+TGG | 0.156741 | 4_1:+12912677 | Msa0536110:CDS |
| CTTGTCACCAATCAAGATTT+TGG | 0.169173 | 4_1:-12911877 | None:intergenic |
| TATGAAAACAATGGACTTCT+TGG | 0.234883 | 4_1:+12912352 | Msa0536110:CDS |
| GAATGCTACACAAGGAAAAT+TGG | 0.258902 | 4_1:-12912105 | None:intergenic |
| AAAAGTTGAATAACAGCATT+TGG | 0.293808 | 4_1:-12911714 | None:intergenic |
| TTCCTCACTTGTCATAATAA+AGG | 0.304109 | 4_1:-12912622 | None:intergenic |
| AAAGAACAGTAGTTGAATAA+AGG | 0.305931 | 4_1:-12911530 | None:intergenic |
| AATGGCAAATCTTTCTGAAA+TGG | 0.311445 | 4_1:-12912669 | None:intergenic |
| ATAACAGCATTTGGGCCATT+AGG | 0.321633 | 4_1:-12911705 | None:intergenic |
| GATTTCCCCAAAATCTTGAT+TGG | 0.348520 | 4_1:+12911870 | Msa0536110:CDS |
| TCAAAGTTCTATTTCCAGTT+TGG | 0.350471 | 4_1:+12912079 | Msa0536110:CDS |
| TAACAGCATTTGGGCCATTA+GGG | 0.351944 | 4_1:-12911704 | None:intergenic |
| GTTAATTCAGTAAAAGAAAT+GGG | 0.366519 | 4_1:+12912155 | Msa0536110:CDS |
| TCACATACTCAGGATACTTT+AGG | 0.366731 | 4_1:-12912310 | None:intergenic |
| ATGGCAAATCTTTCTGAAAT+GGG | 0.369413 | 4_1:-12912668 | None:intergenic |
| CAACCTTGTTGAAAGTTTAA+GGG | 0.375048 | 4_1:-12911670 | None:intergenic |
| AGGAAAATTGGATACCAAAC+TGG | 0.392789 | 4_1:-12912093 | None:intergenic |
| TGTTAATTCAGTAAAAGAAA+TGG | 0.415470 | 4_1:+12912154 | Msa0536110:CDS |
| ACAACCCACATGAGTTTATG+AGG | 0.423242 | 4_1:-12911635 | None:intergenic |
| AAGAACAGTAGTTGAATAAA+GGG | 0.427774 | 4_1:-12911529 | None:intergenic |
| TCCAACACAAATCAACATAA+AGG | 0.430035 | 4_1:+12911591 | Msa0536110:CDS |
| AACAACAGAGAAAAGTGAAA+AGG | 0.435466 | 4_1:-12911568 | None:intergenic |
| TAGCTTTGAGGCGTGGATCA+TGG | 0.435733 | 4_1:+12911985 | Msa0536110:CDS |
| TTCCTCAAAACCTCAATGTT+CGG | 0.445259 | 4_1:-12912044 | None:intergenic |
| AAAAGGTAGTTCTAGCTTTG+AGG | 0.445792 | 4_1:+12911973 | Msa0536110:intron |
| CTCAACAAATCTAGAATGCT+TGG | 0.457146 | 4_1:-12912129 | None:intergenic |
| ACCTTTATGTTGATTTGTGT+TGG | 0.460913 | 4_1:-12911592 | None:intergenic |
| TCAAGAGGTTTAATAAAGAG+TGG | 0.472917 | 4_1:+12912585 | Msa0536110:CDS |
| AAAGTTGAATAACAGCATTT+GGG | 0.476726 | 4_1:-12911713 | None:intergenic |
| CAAAAGGGTGTTTCTTAACA+AGG | 0.481935 | 4_1:-12911773 | None:intergenic |
| TTGCAACTCATAAACCCTAA+TGG | 0.484587 | 4_1:+12911690 | Msa0536110:CDS |
| ACAACAGAGAAAAGTGAAAA+GGG | 0.495856 | 4_1:-12911567 | None:intergenic |
| TATGAGGTTTGACAATGTAA+AGG | 0.499828 | 4_1:-12911619 | None:intergenic |
| ATCAATGGTTGAAGCCCCAA+TGG | 0.538102 | 4_1:-12911850 | None:intergenic |
| CAAGCATTCTAGATTTGTTG+AGG | 0.552143 | 4_1:+12912130 | Msa0536110:CDS |
| GCAATGAGAAAATGATACAT+TGG | 0.568531 | 4_1:-12911483 | None:intergenic |
| AAAACAAAATACAACTTCGA+AGG | 0.568698 | 4_1:-12912185 | None:intergenic |
| TCTGAGATCATCACATACTC+AGG | 0.569253 | 4_1:-12912320 | None:intergenic |
| TGATTCTGTTCCGAACATTG+AGG | 0.570760 | 4_1:+12912034 | Msa0536110:CDS |
| TCAAACCTCATAAACTCATG+TGG | 0.578097 | 4_1:+12911630 | Msa0536110:CDS |
| GTAGTTCTAGCTTTGAGGCG+TGG | 0.585169 | 4_1:+12911978 | Msa0536110:CDS |
| AACAATGGACTTCTTGGTGA+AGG | 0.587900 | 4_1:+12912358 | Msa0536110:CDS |
| AAACTGGAAATAGAACTTTG+AGG | 0.609479 | 4_1:-12912077 | None:intergenic |
| TACCTTTATTATGACAAGTG+AGG | 0.612836 | 4_1:+12912620 | Msa0536110:CDS |
| TGGCAAATCTTTCTGAAATG+GGG | 0.627523 | 4_1:-12912667 | None:intergenic |
| TTATATGCATCCAATAACAA+TGG | 0.629215 | 4_1:-12912687 | None:intergenic |
| TTAATTCAGTAAAAGAAATG+GGG | 0.635626 | 4_1:+12912156 | Msa0536110:CDS |
| CGGAACAGAATCATTAACCA+TGG | 0.638798 | 4_1:-12912024 | None:intergenic |
| CAAACCTCATAAACTCATGT+GGG | 0.639091 | 4_1:+12911631 | Msa0536110:CDS |
| AAGCCCTTAAACTTTCAACA+AGG | 0.642886 | 4_1:+12911667 | Msa0536110:CDS |
| TGCTTGGTGAATGCTACACA+AGG | 0.683625 | 4_1:-12912113 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGATAAAAGTACAAAA+GGG | - | chr4_1:12911791-12911810 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATGAAAACAA+TGG | + | chr4_1:12912343-12912362 | Msa0536110:CDS | 15.0% |
| !!! | ATTTTGATAAAAGTACAAAA+GGG | - | chr4_1:12911791-12911810 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATGAAAACAA+TGG | + | chr4_1:12912343-12912362 | Msa0536110:CDS | 15.0% |
| !!! | GATTTTGATAAAAGTACAAA+AGG | - | chr4_1:12911792-12911811 | None:intergenic | 20.0% |
| !! | TGTTAATTCAGTAAAAGAAA+TGG | + | chr4_1:12912154-12912173 | Msa0536110:CDS | 20.0% |
| !! | GTTAATTCAGTAAAAGAAAT+GGG | + | chr4_1:12912155-12912174 | Msa0536110:CDS | 20.0% |
| !! | TTAATTCAGTAAAAGAAATG+GGG | + | chr4_1:12912156-12912175 | Msa0536110:CDS | 20.0% |
| !! | TAAGTATGTACAAAGAAATT+TGG | + | chr4_1:12912225-12912244 | Msa0536110:intron | 20.0% |
| !! | AAGTATGTACAAAGAAATTT+GGG | + | chr4_1:12912226-12912245 | Msa0536110:intron | 20.0% |
| !!! | GATTTTGATAAAAGTACAAA+AGG | - | chr4_1:12911792-12911811 | None:intergenic | 20.0% |
| !! | TGTTAATTCAGTAAAAGAAA+TGG | + | chr4_1:12912154-12912173 | Msa0536110:CDS | 20.0% |
| !! | GTTAATTCAGTAAAAGAAAT+GGG | + | chr4_1:12912155-12912174 | Msa0536110:CDS | 20.0% |
| !! | TTAATTCAGTAAAAGAAATG+GGG | + | chr4_1:12912156-12912175 | Msa0536110:CDS | 20.0% |
| !! | TAAGTATGTACAAAGAAATT+TGG | + | chr4_1:12912225-12912244 | Msa0536110:intron | 20.0% |
| !! | AAGTATGTACAAAGAAATTT+GGG | + | chr4_1:12912226-12912245 | Msa0536110:intron | 20.0% |
| ! | AAGAACAGTAGTTGAATAAA+GGG | - | chr4_1:12911532-12911551 | None:intergenic | 25.0% |
| ! | AAAGAACAGTAGTTGAATAA+AGG | - | chr4_1:12911533-12911552 | None:intergenic | 25.0% |
| ! | AAAGTTGAATAACAGCATTT+GGG | - | chr4_1:12911716-12911735 | None:intergenic | 25.0% |
| ! | AAAAGTTGAATAACAGCATT+TGG | - | chr4_1:12911717-12911736 | None:intergenic | 25.0% |
| ! | AAAACAAAATACAACTTCGA+AGG | - | chr4_1:12912188-12912207 | None:intergenic | 25.0% |
| !!! | TTCGAAGTTGTATTTTGTTT+TGG | + | chr4_1:12912187-12912206 | Msa0536110:CDS | 25.0% |
| !!! | CAAAATTTAAGATTTTCGAG+AGG | + | chr4_1:12912252-12912271 | Msa0536110:intron | 25.0% |
| ! | TTATATGCATCCAATAACAA+TGG | - | chr4_1:12912690-12912709 | None:intergenic | 25.0% |
| ! | AAGAACAGTAGTTGAATAAA+GGG | - | chr4_1:12911532-12911551 | None:intergenic | 25.0% |
| ! | AAAGAACAGTAGTTGAATAA+AGG | - | chr4_1:12911533-12911552 | None:intergenic | 25.0% |
| ! | AAAGTTGAATAACAGCATTT+GGG | - | chr4_1:12911716-12911735 | None:intergenic | 25.0% |
| ! | AAAAGTTGAATAACAGCATT+TGG | - | chr4_1:12911717-12911736 | None:intergenic | 25.0% |
| ! | AAAACAAAATACAACTTCGA+AGG | - | chr4_1:12912188-12912207 | None:intergenic | 25.0% |
| !!! | TTCGAAGTTGTATTTTGTTT+TGG | + | chr4_1:12912187-12912206 | Msa0536110:CDS | 25.0% |
| !!! | CAAAATTTAAGATTTTCGAG+AGG | + | chr4_1:12912252-12912271 | Msa0536110:intron | 25.0% |
| ! | TTATATGCATCCAATAACAA+TGG | - | chr4_1:12912690-12912709 | None:intergenic | 25.0% |
| ACAACAGAGAAAAGTGAAAA+GGG | - | chr4_1:12911570-12911589 | None:intergenic | 30.0% | |
| AACAACAGAGAAAAGTGAAA+AGG | - | chr4_1:12911571-12911590 | None:intergenic | 30.0% | |
| TCCAACACAAATCAACATAA+AGG | + | chr4_1:12911591-12911610 | Msa0536110:CDS | 30.0% | |
| !! | ACCTTTATGTTGATTTGTGT+TGG | - | chr4_1:12911595-12911614 | None:intergenic | 30.0% |
| TATGAGGTTTGACAATGTAA+AGG | - | chr4_1:12911622-12911641 | None:intergenic | 30.0% | |
| CAACCTTGTTGAAAGTTTAA+GGG | - | chr4_1:12911673-12911692 | None:intergenic | 30.0% | |
| ! | ATTCAACTTTTCAGAAGCTA+TGG | + | chr4_1:12911726-12911745 | Msa0536110:intron | 30.0% |
| !! | AAACTTGAGTTTTGGCAAAA+GGG | - | chr4_1:12911823-12911842 | None:intergenic | 30.0% |
| !! | AAAACTTGAGTTTTGGCAAA+AGG | - | chr4_1:12911824-12911843 | None:intergenic | 30.0% |
| ! | GATTGCAAAAACTTGAGTTT+TGG | - | chr4_1:12911831-12911850 | None:intergenic | 30.0% |
| ! | TCAAGTTTTTGCAATCCATT+GGG | + | chr4_1:12911835-12911854 | Msa0536110:CDS | 30.0% |
| ! | TTGTCACCAATCAAGATTTT+GGG | - | chr4_1:12911879-12911898 | None:intergenic | 30.0% |
| !! | CTTTTAAGAATCTTGTAACG+AGG | - | chr4_1:12911936-12911955 | None:intergenic | 30.0% |
| ! | GAACTTTTACAATGATTCCA+TGG | + | chr4_1:12912007-12912026 | Msa0536110:CDS | 30.0% |
| AAACTGGAAATAGAACTTTG+AGG | - | chr4_1:12912080-12912099 | None:intergenic | 30.0% | |
| TCAAAGTTCTATTTCCAGTT+TGG | + | chr4_1:12912079-12912098 | Msa0536110:CDS | 30.0% | |
| !! | AATTTAAGATTTTCGAGAGG+TGG | + | chr4_1:12912255-12912274 | Msa0536110:intron | 30.0% |
| !! | ATTTAAGATTTTCGAGAGGT+GGG | + | chr4_1:12912256-12912275 | Msa0536110:intron | 30.0% |
| ! | TATGAAAACAATGGACTTCT+TGG | + | chr4_1:12912352-12912371 | Msa0536110:CDS | 30.0% |
| ! | ATCTTGATAACAGCACATTT+AGG | - | chr4_1:12912558-12912577 | None:intergenic | 30.0% |
| !!! | ATCAAGATTTTGAAGTCAAG+AGG | + | chr4_1:12912570-12912589 | Msa0536110:intron | 30.0% |
| TCAAGAGGTTTAATAAAGAG+TGG | + | chr4_1:12912585-12912604 | Msa0536110:CDS | 30.0% | |
| TACCTTTATTATGACAAGTG+AGG | + | chr4_1:12912620-12912639 | Msa0536110:CDS | 30.0% | |
| TTCCTCACTTGTCATAATAA+AGG | - | chr4_1:12912625-12912644 | None:intergenic | 30.0% | |
| !! | ATGGCAAATCTTTCTGAAAT+GGG | - | chr4_1:12912671-12912690 | None:intergenic | 30.0% |
| ! | AATGGCAAATCTTTCTGAAA+TGG | - | chr4_1:12912672-12912691 | None:intergenic | 30.0% |
| GAAAGATTTGCCATTGTTAT+TGG | + | chr4_1:12912677-12912696 | Msa0536110:CDS | 30.0% | |
| ACAACAGAGAAAAGTGAAAA+GGG | - | chr4_1:12911570-12911589 | None:intergenic | 30.0% | |
| AACAACAGAGAAAAGTGAAA+AGG | - | chr4_1:12911571-12911590 | None:intergenic | 30.0% | |
| TCCAACACAAATCAACATAA+AGG | + | chr4_1:12911591-12911610 | Msa0536110:CDS | 30.0% | |
| !! | ACCTTTATGTTGATTTGTGT+TGG | - | chr4_1:12911595-12911614 | None:intergenic | 30.0% |
| TATGAGGTTTGACAATGTAA+AGG | - | chr4_1:12911622-12911641 | None:intergenic | 30.0% | |
| CAACCTTGTTGAAAGTTTAA+GGG | - | chr4_1:12911673-12911692 | None:intergenic | 30.0% | |
| ! | ATTCAACTTTTCAGAAGCTA+TGG | + | chr4_1:12911726-12911745 | Msa0536110:intron | 30.0% |
| !! | AAACTTGAGTTTTGGCAAAA+GGG | - | chr4_1:12911823-12911842 | None:intergenic | 30.0% |
| !! | AAAACTTGAGTTTTGGCAAA+AGG | - | chr4_1:12911824-12911843 | None:intergenic | 30.0% |
| ! | GATTGCAAAAACTTGAGTTT+TGG | - | chr4_1:12911831-12911850 | None:intergenic | 30.0% |
| ! | TCAAGTTTTTGCAATCCATT+GGG | + | chr4_1:12911835-12911854 | Msa0536110:CDS | 30.0% |
| ! | TTGTCACCAATCAAGATTTT+GGG | - | chr4_1:12911879-12911898 | None:intergenic | 30.0% |
| !! | CTTTTAAGAATCTTGTAACG+AGG | - | chr4_1:12911936-12911955 | None:intergenic | 30.0% |
| ! | GAACTTTTACAATGATTCCA+TGG | + | chr4_1:12912007-12912026 | Msa0536110:CDS | 30.0% |
| AAACTGGAAATAGAACTTTG+AGG | - | chr4_1:12912080-12912099 | None:intergenic | 30.0% | |
| TCAAAGTTCTATTTCCAGTT+TGG | + | chr4_1:12912079-12912098 | Msa0536110:CDS | 30.0% | |
| !! | AATTTAAGATTTTCGAGAGG+TGG | + | chr4_1:12912255-12912274 | Msa0536110:intron | 30.0% |
| !! | ATTTAAGATTTTCGAGAGGT+GGG | + | chr4_1:12912256-12912275 | Msa0536110:intron | 30.0% |
| ! | TATGAAAACAATGGACTTCT+TGG | + | chr4_1:12912352-12912371 | Msa0536110:CDS | 30.0% |
| ! | ATCTTGATAACAGCACATTT+AGG | - | chr4_1:12912558-12912577 | None:intergenic | 30.0% |
| !!! | ATCAAGATTTTGAAGTCAAG+AGG | + | chr4_1:12912570-12912589 | Msa0536110:intron | 30.0% |
| TCAAGAGGTTTAATAAAGAG+TGG | + | chr4_1:12912585-12912604 | Msa0536110:CDS | 30.0% | |
| TACCTTTATTATGACAAGTG+AGG | + | chr4_1:12912620-12912639 | Msa0536110:CDS | 30.0% | |
| TTCCTCACTTGTCATAATAA+AGG | - | chr4_1:12912625-12912644 | None:intergenic | 30.0% | |
| !! | ATGGCAAATCTTTCTGAAAT+GGG | - | chr4_1:12912671-12912690 | None:intergenic | 30.0% |
| ! | AATGGCAAATCTTTCTGAAA+TGG | - | chr4_1:12912672-12912691 | None:intergenic | 30.0% |
| GAAAGATTTGCCATTGTTAT+TGG | + | chr4_1:12912677-12912696 | Msa0536110:CDS | 30.0% | |
| TCAAACCTCATAAACTCATG+TGG | + | chr4_1:12911630-12911649 | Msa0536110:CDS | 35.0% | |
| CAAACCTCATAAACTCATGT+GGG | + | chr4_1:12911631-12911650 | Msa0536110:CDS | 35.0% | |
| !! | GAAAGTTTAAGGGCTTTTTC+AGG | - | chr4_1:12911663-12911682 | None:intergenic | 35.0% |
| AAGCCCTTAAACTTTCAACA+AGG | + | chr4_1:12911667-12911686 | Msa0536110:CDS | 35.0% | |
| GCAACCTTGTTGAAAGTTTA+AGG | - | chr4_1:12911674-12911693 | None:intergenic | 35.0% | |
| TTGCAACTCATAAACCCTAA+TGG | + | chr4_1:12911690-12911709 | Msa0536110:CDS | 35.0% | |
| !! | CAAAAGGGTGTTTCTTAACA+AGG | - | chr4_1:12911776-12911795 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTGCAATCCAT+TGG | + | chr4_1:12911834-12911853 | Msa0536110:CDS | 35.0% |
| ! | CAAGTTTTTGCAATCCATTG+GGG | + | chr4_1:12911836-12911855 | Msa0536110:CDS | 35.0% |
| !! | CAAGATTTTGGGGAAATCAA+TGG | - | chr4_1:12911868-12911887 | None:intergenic | 35.0% |
| GATTTCCCCAAAATCTTGAT+TGG | + | chr4_1:12911870-12911889 | Msa0536110:CDS | 35.0% | |
| ! | TGTCACCAATCAAGATTTTG+GGG | - | chr4_1:12911878-12911897 | None:intergenic | 35.0% |
| ! | CTTGTCACCAATCAAGATTT+TGG | - | chr4_1:12911880-12911899 | None:intergenic | 35.0% |
| ! | CCTTTTTATCATCGCAAACT+AGG | - | chr4_1:12911959-12911978 | None:intergenic | 35.0% |
| ! | CCTAGTTTGCGATGATAAAA+AGG | + | chr4_1:12911956-12911975 | Msa0536110:intron | 35.0% |
| !! | AAAAGGTAGTTCTAGCTTTG+AGG | + | chr4_1:12911973-12911992 | Msa0536110:intron | 35.0% |
| TTCCTCAAAACCTCAATGTT+CGG | - | chr4_1:12912047-12912066 | None:intergenic | 35.0% | |
| AGGAAAATTGGATACCAAAC+TGG | - | chr4_1:12912096-12912115 | None:intergenic | 35.0% | |
| GAATGCTACACAAGGAAAAT+TGG | - | chr4_1:12912108-12912127 | None:intergenic | 35.0% | |
| ! | CTCAACAAATCTAGAATGCT+TGG | - | chr4_1:12912132-12912151 | None:intergenic | 35.0% |
| !! | CAAGCATTCTAGATTTGTTG+AGG | + | chr4_1:12912130-12912149 | Msa0536110:CDS | 35.0% |
| !! | TTTAAGATTTTCGAGAGGTG+GGG | + | chr4_1:12912257-12912276 | Msa0536110:intron | 35.0% |
| TCACATACTCAGGATACTTT+AGG | - | chr4_1:12912313-12912332 | None:intergenic | 35.0% | |
| !! | TGGCAAATCTTTCTGAAATG+GGG | - | chr4_1:12912670-12912689 | None:intergenic | 35.0% |
| TCAAACCTCATAAACTCATG+TGG | + | chr4_1:12911630-12911649 | Msa0536110:CDS | 35.0% | |
| CAAACCTCATAAACTCATGT+GGG | + | chr4_1:12911631-12911650 | Msa0536110:CDS | 35.0% | |
| !! | GAAAGTTTAAGGGCTTTTTC+AGG | - | chr4_1:12911663-12911682 | None:intergenic | 35.0% |
| AAGCCCTTAAACTTTCAACA+AGG | + | chr4_1:12911667-12911686 | Msa0536110:CDS | 35.0% | |
| GCAACCTTGTTGAAAGTTTA+AGG | - | chr4_1:12911674-12911693 | None:intergenic | 35.0% | |
| TTGCAACTCATAAACCCTAA+TGG | + | chr4_1:12911690-12911709 | Msa0536110:CDS | 35.0% | |
| !! | CAAAAGGGTGTTTCTTAACA+AGG | - | chr4_1:12911776-12911795 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTGCAATCCAT+TGG | + | chr4_1:12911834-12911853 | Msa0536110:CDS | 35.0% |
| ! | CAAGTTTTTGCAATCCATTG+GGG | + | chr4_1:12911836-12911855 | Msa0536110:CDS | 35.0% |
| !! | CAAGATTTTGGGGAAATCAA+TGG | - | chr4_1:12911868-12911887 | None:intergenic | 35.0% |
| GATTTCCCCAAAATCTTGAT+TGG | + | chr4_1:12911870-12911889 | Msa0536110:CDS | 35.0% | |
| ! | TGTCACCAATCAAGATTTTG+GGG | - | chr4_1:12911878-12911897 | None:intergenic | 35.0% |
| ! | CTTGTCACCAATCAAGATTT+TGG | - | chr4_1:12911880-12911899 | None:intergenic | 35.0% |
| ! | CCTTTTTATCATCGCAAACT+AGG | - | chr4_1:12911959-12911978 | None:intergenic | 35.0% |
| ! | CCTAGTTTGCGATGATAAAA+AGG | + | chr4_1:12911956-12911975 | Msa0536110:intron | 35.0% |
| !! | AAAAGGTAGTTCTAGCTTTG+AGG | + | chr4_1:12911973-12911992 | Msa0536110:intron | 35.0% |
| TTCCTCAAAACCTCAATGTT+CGG | - | chr4_1:12912047-12912066 | None:intergenic | 35.0% | |
| AGGAAAATTGGATACCAAAC+TGG | - | chr4_1:12912096-12912115 | None:intergenic | 35.0% | |
| GAATGCTACACAAGGAAAAT+TGG | - | chr4_1:12912108-12912127 | None:intergenic | 35.0% | |
| ! | CTCAACAAATCTAGAATGCT+TGG | - | chr4_1:12912132-12912151 | None:intergenic | 35.0% |
| !! | CAAGCATTCTAGATTTGTTG+AGG | + | chr4_1:12912130-12912149 | Msa0536110:CDS | 35.0% |
| !! | TTTAAGATTTTCGAGAGGTG+GGG | + | chr4_1:12912257-12912276 | Msa0536110:intron | 35.0% |
| TCACATACTCAGGATACTTT+AGG | - | chr4_1:12912313-12912332 | None:intergenic | 35.0% | |
| !! | TGGCAAATCTTTCTGAAATG+GGG | - | chr4_1:12912670-12912689 | None:intergenic | 35.0% |
| ACAACCCACATGAGTTTATG+AGG | - | chr4_1:12911638-12911657 | None:intergenic | 40.0% | |
| TAACAGCATTTGGGCCATTA+GGG | - | chr4_1:12911707-12911726 | None:intergenic | 40.0% | |
| ATAACAGCATTTGGGCCATT+AGG | - | chr4_1:12911708-12911727 | None:intergenic | 40.0% | |
| ! | CAAGTTTTTGACAGCAAGCT+TGG | + | chr4_1:12911896-12911915 | Msa0536110:CDS | 40.0% |
| CGGAACAGAATCATTAACCA+TGG | - | chr4_1:12912027-12912046 | None:intergenic | 40.0% | |
| TGATTCTGTTCCGAACATTG+AGG | + | chr4_1:12912034-12912053 | Msa0536110:CDS | 40.0% | |
| ! | TTCCGAACATTGAGGTTTTG+AGG | + | chr4_1:12912042-12912061 | Msa0536110:CDS | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | + | chr4_1:12912050-12912069 | Msa0536110:CDS | 40.0% |
| ! | TCTGAGATCATCACATACTC+AGG | - | chr4_1:12912323-12912342 | None:intergenic | 40.0% |
| ! | AACAATGGACTTCTTGGTGA+AGG | + | chr4_1:12912358-12912377 | Msa0536110:CDS | 40.0% |
| ACAACCCACATGAGTTTATG+AGG | - | chr4_1:12911638-12911657 | None:intergenic | 40.0% | |
| TAACAGCATTTGGGCCATTA+GGG | - | chr4_1:12911707-12911726 | None:intergenic | 40.0% | |
| ATAACAGCATTTGGGCCATT+AGG | - | chr4_1:12911708-12911727 | None:intergenic | 40.0% | |
| ! | CAAGTTTTTGACAGCAAGCT+TGG | + | chr4_1:12911896-12911915 | Msa0536110:CDS | 40.0% |
| CGGAACAGAATCATTAACCA+TGG | - | chr4_1:12912027-12912046 | None:intergenic | 40.0% | |
| TGATTCTGTTCCGAACATTG+AGG | + | chr4_1:12912034-12912053 | Msa0536110:CDS | 40.0% | |
| ! | TTCCGAACATTGAGGTTTTG+AGG | + | chr4_1:12912042-12912061 | Msa0536110:CDS | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | + | chr4_1:12912050-12912069 | Msa0536110:CDS | 40.0% |
| ! | TCTGAGATCATCACATACTC+AGG | - | chr4_1:12912323-12912342 | None:intergenic | 40.0% |
| ! | AACAATGGACTTCTTGGTGA+AGG | + | chr4_1:12912358-12912377 | Msa0536110:CDS | 40.0% |
| ATCAATGGTTGAAGCCCCAA+TGG | - | chr4_1:12911853-12911872 | None:intergenic | 45.0% | |
| ! | TGCTTGGTGAATGCTACACA+AGG | - | chr4_1:12912116-12912135 | None:intergenic | 45.0% |
| GACTTCTTGGTGAAGGATGT+GGG | + | chr4_1:12912365-12912384 | Msa0536110:intron | 45.0% | |
| AAGACATTGCTACATGCCCT+GGG | + | chr4_1:12912399-12912418 | Msa0536110:intron | 45.0% | |
| ATCAATGGTTGAAGCCCCAA+TGG | - | chr4_1:12911853-12911872 | None:intergenic | 45.0% | |
| ! | TGCTTGGTGAATGCTACACA+AGG | - | chr4_1:12912116-12912135 | None:intergenic | 45.0% |
| GACTTCTTGGTGAAGGATGT+GGG | + | chr4_1:12912365-12912384 | Msa0536110:intron | 45.0% | |
| AAGACATTGCTACATGCCCT+GGG | + | chr4_1:12912399-12912418 | Msa0536110:intron | 45.0% | |
| !! | GTAGTTCTAGCTTTGAGGCG+TGG | + | chr4_1:12911978-12911997 | Msa0536110:CDS | 50.0% |
| !! | TAGCTTTGAGGCGTGGATCA+TGG | + | chr4_1:12911985-12912004 | Msa0536110:CDS | 50.0% |
| GGACTTCTTGGTGAAGGATG+TGG | + | chr4_1:12912364-12912383 | Msa0536110:intron | 50.0% | |
| GGGCATGTAGCAATGTCTTC+TGG | - | chr4_1:12912398-12912417 | None:intergenic | 50.0% | |
| GAAGACATTGCTACATGCCC+TGG | + | chr4_1:12912398-12912417 | Msa0536110:intron | 50.0% | |
| !! | GTAGTTCTAGCTTTGAGGCG+TGG | + | chr4_1:12911978-12911997 | Msa0536110:CDS | 50.0% |
| !! | TAGCTTTGAGGCGTGGATCA+TGG | + | chr4_1:12911985-12912004 | Msa0536110:CDS | 50.0% |
| GGACTTCTTGGTGAAGGATG+TGG | + | chr4_1:12912364-12912383 | Msa0536110:intron | 50.0% | |
| GGGCATGTAGCAATGTCTTC+TGG | - | chr4_1:12912398-12912417 | None:intergenic | 50.0% | |
| GAAGACATTGCTACATGCCC+TGG | + | chr4_1:12912398-12912417 | Msa0536110:intron | 50.0% | |
| !! | AGATTTTCGAGAGGTGGGGC+TGG | + | chr4_1:12912261-12912280 | Msa0536110:intron | 55.0% |
| AGTTGCGGGTCAGAATCCCA+GGG | - | chr4_1:12912418-12912437 | None:intergenic | 55.0% | |
| AAGTTGCGGGTCAGAATCCC+AGG | - | chr4_1:12912419-12912438 | None:intergenic | 55.0% | |
| TGGGATTCTGACCCGCAACT+TGG | + | chr4_1:12912418-12912437 | Msa0536110:intron | 55.0% | |
| !! | AGATTTTCGAGAGGTGGGGC+TGG | + | chr4_1:12912261-12912280 | Msa0536110:intron | 55.0% |
| AGTTGCGGGTCAGAATCCCA+GGG | - | chr4_1:12912418-12912437 | None:intergenic | 55.0% | |
| AAGTTGCGGGTCAGAATCCC+AGG | - | chr4_1:12912419-12912438 | None:intergenic | 55.0% | |
| TGGGATTCTGACCCGCAACT+TGG | + | chr4_1:12912418-12912437 | Msa0536110:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 12911486 | 12912728 | 12911486 | ID=Msa0536110;Name=Msa0536110 |
| chr4_1 | mRNA | 12911486 | 12912728 | 12911486 | ID=Msa0536110-mRNA-1;Parent=Msa0536110;Name=Msa0536110-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|0|0.2|5|0|316 |
| chr4_1 | exon | 12911486 | 12911722 | 12911486 | ID=Msa0536110-mRNA-1:exon:4107;Parent=Msa0536110-mRNA-1 |
| chr4_1 | exon | 12911765 | 12911959 | 12911765 | ID=Msa0536110-mRNA-1:exon:4108;Parent=Msa0536110-mRNA-1 |
| chr4_1 | exon | 12911978 | 12912223 | 12911978 | ID=Msa0536110-mRNA-1:exon:4109;Parent=Msa0536110-mRNA-1 |
| chr4_1 | exon | 12912263 | 12912382 | 12912263 | ID=Msa0536110-mRNA-1:exon:4110;Parent=Msa0536110-mRNA-1 |
| chr4_1 | exon | 12912576 | 12912728 | 12912576 | ID=Msa0536110-mRNA-1:exon:4111;Parent=Msa0536110-mRNA-1 |
| chr4_1 | CDS | 12911486 | 12911722 | 12911486 | ID=Msa0536110-mRNA-1:cds;Parent=Msa0536110-mRNA-1 |
| chr4_1 | CDS | 12911765 | 12911959 | 12911765 | ID=Msa0536110-mRNA-1:cds;Parent=Msa0536110-mRNA-1 |
| chr4_1 | CDS | 12911978 | 12912223 | 12911978 | ID=Msa0536110-mRNA-1:cds;Parent=Msa0536110-mRNA-1 |
| chr4_1 | CDS | 12912263 | 12912382 | 12912263 | ID=Msa0536110-mRNA-1:cds;Parent=Msa0536110-mRNA-1 |
| chr4_1 | CDS | 12912576 | 12912728 | 12912576 | ID=Msa0536110-mRNA-1:cds;Parent=Msa0536110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
