AlfalfaGEDB | Msa0537380

M. sativa cultivar zhongmu-4 / Msa0537380

KEGG: -
GO: GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007623 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048511 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537380	XP_013455102.1	94.745	628	29	3	1	627	1	625	0.0	1107

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537380	sp\|O81316\|SCL6_ARATH	41.890	635	278	16	4	627	1	555	7.82e-133	404

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537380	A0A072UTD0	94.745	628	29	3	1	627	1	625	0.0	1107

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0537380	TF	GRAS

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537380	MtrunA17_Chr4g0012071	94.590	536	25	3	93	627	20	552	0.0	1024
Msa0537380	MtrunA17_Chr7g0230771	60.909	440	154	6	197	627	302	732	2.70e-169	500
Msa0537380	MtrunA17_Chr7g0230771	35.266	207	102	9	1	191	4	194	1.34e-12	70.9
Msa0537380	MtrunA17_Chr7g0230731	60.000	440	158	6	197	627	299	729	4.30e-166	492
Msa0537380	MtrunA17_Chr8g0373561	34.324	370	225	10	269	627	180	542	9.76e-54	192
Msa0537380	MtrunA17_Chr4g0039661	30.670	388	218	15	268	626	190	555	7.03e-33	133
Msa0537380	MtrunA17_Chr8g0376381	25.967	362	252	6	272	626	170	522	1.02e-32	132
Msa0537380	MtrunA17_Chr7g0224271	28.169	426	255	15	232	627	270	674	2.27e-32	132
Msa0537380	MtrunA17_Chr4g0038761	28.533	368	236	9	274	626	87	442	4.35e-32	129
Msa0537380	MtrunA17_Chr2g0306641	26.570	414	259	12	233	627	101	488	9.22e-32	129

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537380	AT4G00150.1	41.890	635	278	16	4	627	1	555	7.95e-134	404
Msa0537380	AT2G45160.1	39.376	673	326	24	4	627	1	640	1.69e-112	351
Msa0537380	AT3G60630.1	39.728	662	322	25	4	627	1	623	1.04e-109	343
Msa0537380	AT4G36710.1	32.181	376	222	11	270	626	124	485	6.50e-52	186
Msa0537380	AT5G66770.1	29.534	386	247	13	258	626	207	584	4.25e-37	146
Msa0537380	AT2G04890.1	28.495	372	237	9	272	626	54	413	1.61e-36	142
Msa0537380	AT3G50650.1	27.907	387	238	12	264	626	173	542	1.06e-30	127
Msa0537380	AT2G01570.1	26.902	368	245	9	272	626	225	581	2.30e-30	126
Msa0537380	AT5G48150.1	24.403	377	268	8	265	626	116	490	1.78e-29	122
Msa0537380	AT5G48150.4	24.403	377	268	8	265	626	116	490	1.78e-29	122

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Find 149 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAGATTGAGTATTT+TGG	0.160504	4_1:-15759803	None:intergenic
AAAATGCTCAGATATCAATG+AGG	0.702130	4_1:-15759760	None:intergenic
AAAGAACAAGGACAAAGCTT+AGG	0.481534	4_1:-15759733	None:intergenic
AAAGCAGCTAAGGCCGAAAG+TGG	0.562649	4_1:+15761986	Msa0537380:CDS
AACAAAATCTTGCAAAGTGG+TGG	0.589673	4_1:+15760961	Msa0537380:CDS
AACAGGAAAGTTCACACCAA+TGG	0.593516	4_1:-15761913	None:intergenic
AACTAATTATGGTTATGATA+AGG	0.416365	4_1:-15759832	None:intergenic
AACTCATCTCAGTTTCAACT+TGG	0.473456	4_1:+15762375	Msa0537380:CDS
AACTTGGAGATGTTGATAAG+TGG	0.518300	4_1:+15762391	Msa0537380:exon
AAGAACATGAACGACATTGG+TGG	0.589769	4_1:-15762054	None:intergenic

Showing 1 to 10 of 149 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCTCAGATATCAATG+AGG	-	chr4_1:15759763-15759782	None:intergenic	30.0%
AAGATGAAAATGGAGAACTA+GGG	-	chr4_1:15760717-15760736	None:intergenic	30.0%
GACATTGTTGAAGATGAAAA+TGG	-	chr4_1:15760727-15760746	None:intergenic	30.0%
GAGAATAGTGAAGAAAAATG+TGG	+	chr4_1:15760838-15760857	Msa0537380:CDS	30.0%
AATAGTGAAGAAAAATGTGG+TGG	+	chr4_1:15760841-15760860	Msa0537380:CDS	30.0%
TTGAACAAAATCTTGCAAAG+TGG	+	chr4_1:15760958-15760977	Msa0537380:CDS	30.0%
TTGTAATTCTCAGGAATGAA+TGG	-	chr4_1:15761099-15761118	None:intergenic	30.0%
CAGTTAATGCTTCATTCAAA+CGG	+	chr4_1:15761471-15761490	Msa0537380:CDS	30.0%
TTACTATCAAAGAAATGACC+CGG	-	chr4_1:15761888-15761907	None:intergenic	30.0%
TTACTTATGAAACTGGAAAC+AGG	-	chr4_1:15761933-15761952	None:intergenic	30.0%

Showing 1 to 10 of 214 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	15759651	15762851	15759651	ID=Msa0537380;Name=Msa0537380
chr4_1	mRNA	15759651	15762851	15759651	ID=Msa0537380-mRNA-1;Parent=Msa0537380;Name=Msa0537380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=456\|1\|1\|1\|0\|0.5\|2\|445\|627
chr4_1	exon	15759651	15760106	15759651	ID=Msa0537380-mRNA-1:exon:4776;Parent=Msa0537380-mRNA-1
chr4_1	exon	15760523	15762851	15760523	ID=Msa0537380-mRNA-1:exon:4777;Parent=Msa0537380-mRNA-1
chr4_1	five_prime_UTR	15759651	15760106	15759651	ID=Msa0537380-mRNA-1:five_prime_utr;Parent=Msa0537380-mRNA-1
chr4_1	CDS	15760523	15762406	15760523	ID=Msa0537380-mRNA-1:cds;Parent=Msa0537380-mRNA-1
chr4_1	three_prime_UTR	15762407	15762851	15762407	ID=Msa0537380-mRNA-1:three_prime_utr;Parent=Msa0537380-mRNA-1

Gene Sequence

>Msa0537380

ATGAAGGCTTTGCCCTTAACTTTTGAGGAATTTCAAGTGAAGGGAATGTTGGATAATTTCTCTTCAACTTCAAATTCAGTTTCAGATTCATTTTCATTGCTTTTGAATCAACCTCAGCAACAAAATTGGTCATTAGATAAAGAAGATTATTGCTATGTGGAGCCCACTTCAGTTCTTGATTCAAGAAGAAGCCCTAGTTCTCCATTTTCATCTTCAACAATGTCATCTTCTCATGGTAGTGGTAGTAATGGTAATGGTTCAAATAACAATAGTTCAATGGTAGTTTCTGAGAACCTTGCTCATCTTTCAAATGATGAGAATAGTGAAGAAAAATGTGGTGGTGGTGGTGGTGGTATGAGAATGGATGATTGGGAAGGTCAAGATCAGTCACTTTTGAGGTTAATTATGGGAGATGTTGAAGACCCTTATGCTGGATTGAACAAAATCTTGCAAAGTGGTGGTTGTGGTTCTCAAAATGTTGATTTTCATGGTGGTTTTGGAGTTTTGGATCATCAACAACAACAATGGTTGAACATGGACGCTTCGGTTCAACAAGGGAATTACAATGTTTTTCCATTCATTCCTGAGAATTACAATGTGTTACCGCTTTTGGATTCTGGTCAAGAAGTGTTTGCTAGGAGACATCAGCAGCAGGAAACACAGCTTCCATTGTTTCCTCATCATCATGATCTGCAGCAGCATTACCAACAACAGCAGTCGTCGGTTGTTCCAATTGCGAAGCAGCAAAAGGTGAGTTCTAGTACTACCGGAGATGATGCAAGCATCCAGCTTCAGCAGAGTATATTTGATCAGCTATTCAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAAGCCTTTTCAAAGGGCTTCTTTCTACATGAAAGAAGCCTTACAGTTAATGCTTCATTCAAACGGTAACAATCTCACGGCTTTTTCGCCGATTAGTTTCATTTTCAAAATTGGAGCTTATAAGTCTTTTTCCGAGATATCACCTGTTCTTCAGTTTGCCAACTTTACTTGTAATCAAGCCCTCATTGAAGCCTTGGAAAGGTTCGATCGAATTCATGTTATTGATTTCGATATCGGGTTTGGAGTACAATGGTCATCTTTTATGCAAGAGATTGCACTAAGAAGTAACGGTAAGCCTTCACTTAAGATTACTGCTGTTGTATCTCCCTCTTCTTGCAACGAGATTGAGCTCAATTTCACCCAAGAAAATTTGAGTCAGTATGCAAAAGACCTCAACATGTCGTTTGAGTTCAACGTTTTGAACATTGAATCGTTGAACTTGCCATCATGTCCTCTACCGGGTCATTTCTTTGATAGTAATGAAGCCATTGGTGTGAACTTTCCTGTTTCCAGTTTCATAAGTAATCCATCATGCTTCCCTGTGGCTCTTCATTTTTTAAAGCAGCTAAGGCCGAAAGTGGTCGTAACTTTGGACAAAAACTGCGACCGAATGGATGTTCCTCTTCCCACCAATGTCGTTCATGTTCTTCAATGTTACTCAGCTTTACTTGAATCACTTGATGCTGTGAACGTGAACCTCGATGTACTCCAAAAGATTGAAAGGCATTACATCCAACCAACCATCAACAAAATCATCCTCGGTCACCACAACCAGCGTGACAAATTACCTCCATGGAGGAACATGTTTCTTCAGTCTGGTTTCTCTCCCTTCACATTCAGCAAATTCACGGAAGCTCAAGCTGAGTGTTTGGTTCAAAGGGCACCTGTGAGAGGATTTCAAGTGGAAAGAAAGCCTTCCTTTCTTGTGCTATGCTGGCAGAGGAAAGAACTCATCTCAGTTTCAACTTGGAGATGTTGA

Protein sequence

>Msa0537380

MKALPLTFEEFQVKGMLDNFSSTSNSVSDSFSLLLNQPQQQNWSLDKEDYCYVEPTSVLDSRRSPSSPFSSSTMSSSHGSGSNGNGSNNNSSMVVSENLAHLSNDENSEEKCGGGGGGMRMDDWEGQDQSLLRLIMGDVEDPYAGLNKILQSGGCGSQNVDFHGGFGVLDHQQQQWLNMDASVQQGNYNVFPFIPENYNVLPLLDSGQEVFARRHQQQETQLPLFPHHHDLQQHYQQQQSSVVPIAKQQKVSSSTTGDDASIQLQQSIFDQLFKTAELIEAGNPVQAQGILARLNHQLSPIGKPFQRASFYMKEALQLMLHSNGNNLTAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQALIEALERFDRIHVIDFDIGFGVQWSSFMQEIALRSNGKPSLKITAVVSPSSCNEIELNFTQENLSQYAKDLNMSFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNFPVSSFISNPSCFPVALHFLKQLRPKVVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDAVNVNLDVLQKIERHYIQPTINKIILGHHNQRDKLPPWRNMFLQSGFSPFTFSKFTEAQAECLVQRAPVRGFQVERKPSFLVLCWQRKELISVSTWRC*