AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0537380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537380 MtrunA17_Chr4g0012071 94.590 536 25 3 93 627 20 552 0.0 1024
Msa0537380 MtrunA17_Chr7g0230771 60.909 440 154 6 197 627 302 732 2.70e-169 500
Msa0537380 MtrunA17_Chr7g0230771 35.266 207 102 9 1 191 4 194 1.34e-12 70.9
Msa0537380 MtrunA17_Chr7g0230731 60.000 440 158 6 197 627 299 729 4.30e-166 492
Msa0537380 MtrunA17_Chr8g0373561 34.324 370 225 10 269 627 180 542 9.76e-54 192
Msa0537380 MtrunA17_Chr4g0039661 30.670 388 218 15 268 626 190 555 7.03e-33 133
Msa0537380 MtrunA17_Chr8g0376381 25.967 362 252 6 272 626 170 522 1.02e-32 132
Msa0537380 MtrunA17_Chr7g0224271 28.169 426 255 15 232 627 270 674 2.27e-32 132
Msa0537380 MtrunA17_Chr4g0038761 28.533 368 236 9 274 626 87 442 4.35e-32 129
Msa0537380 MtrunA17_Chr2g0306641 26.570 414 259 12 233 627 101 488 9.22e-32 129
Msa0537380 MtrunA17_Chr5g0445331 27.321 377 246 10 272 626 162 532 1.93e-31 129
Msa0537380 MtrunA17_Chr3g0110971 26.260 377 247 8 272 626 220 587 8.24e-31 127
Msa0537380 MtrunA17_Chr3g0101141 26.042 384 242 12 270 626 174 542 3.35e-30 125
Msa0537380 MtrunA17_Chr5g0447691 25.405 370 258 8 272 626 178 544 5.12e-30 124
Msa0537380 MtrunA17_Chr7g0245601 27.100 369 232 8 276 626 443 792 4.54e-29 123
Msa0537380 MtrunA17_Chr2g0290241 25.858 379 252 11 270 627 56 426 1.38e-27 115
Msa0537380 MtrunA17_Chr2g0319091 24.582 419 265 12 237 625 181 578 3.18e-26 113
Msa0537380 MtrunA17_Chr1g0183641 26.344 372 241 11 272 627 124 478 3.46e-25 109
Msa0537380 MtrunA17_Chr4g0057291 25.789 380 245 11 272 625 293 661 4.68e-25 110
Msa0537380 MtrunA17_Chr4g0076091 25.330 379 250 10 272 627 176 544 9.54e-25 108
Msa0537380 MtrunA17_Chr3g0125811 25.806 372 254 8 272 626 204 570 1.51e-24 108
Msa0537380 MtrunA17_Chr1g0159461 26.330 376 247 10 272 626 226 592 1.90e-24 108
Msa0537380 MtrunA17_Chr5g0424131 25.490 408 263 15 252 627 102 500 9.79e-22 99.0
Msa0537380 MtrunA17_Chr5g0403741 27.778 234 151 8 403 627 51 275 9.89e-22 95.5
Msa0537380 MtrunA17_Chr4g0057891 24.937 397 260 13 258 627 136 521 3.54e-21 97.4
Msa0537380 MtrunA17_Chr7g0270031 23.543 429 292 10 230 626 130 554 7.23e-21 96.7
Msa0537380 MtrunA17_Chr3g0114841 27.907 301 200 10 339 627 206 501 1.08e-20 95.9
Msa0537380 MtrunA17_Chr2g0328381 25.333 375 249 12 272 625 276 640 4.60e-20 94.7
Msa0537380 MtrunA17_Chr2g0328431 22.705 414 287 10 234 625 251 653 1.49e-19 92.8
Msa0537380 MtrunA17_Chr8g0383981 27.225 382 238 16 265 625 133 495 3.06e-19 91.3
Msa0537380 MtrunA17_Chr7g0238891 22.439 410 268 11 250 626 348 740 1.25e-18 90.1
Msa0537380 MtrunA17_Chr2g0294471 25.459 381 259 12 267 626 200 576 2.48e-18 89.0
Msa0537380 MtrunA17_Chr2g0328341 23.529 374 257 10 272 625 273 637 6.97e-18 87.8
Msa0537380 MtrunA17_Chr2g0328391 22.043 372 261 8 276 625 304 668 1.79e-17 86.3
Msa0537380 MtrunA17_Chr2g0294461 25.000 384 260 12 267 626 206 585 2.94e-17 85.5
Msa0537380 MtrunA17_Chr2g0328411 22.194 392 273 10 253 625 275 653 4.27e-17 85.1
Msa0537380 MtrunA17_Chr4g0031741 22.546 377 257 10 272 625 285 649 9.25e-16 80.9
Msa0537380 MtrunA17_Chr8g0357601 22.166 397 266 10 260 626 169 552 3.95e-15 78.6
Msa0537380 MtrunA17_Chr2g0328361 23.243 370 238 13 272 625 275 614 6.05e-15 78.2
Msa0537380 MtrunA17_Chr5g0401131 20.888 383 268 9 272 626 115 490 8.37e-15 77.4
Msa0537380 MtrunA17_Chr4g0031711 22.038 422 296 10 227 625 321 732 1.29e-14 77.4
Msa0537380 MtrunA17_Chr2g0328371 24.706 255 171 7 339 579 2 249 3.70e-14 72.8
Msa0537380 MtrunA17_Chr4g0031701 25.271 277 185 7 272 531 255 526 1.07e-13 74.3
Msa0537380 MtrunA17_Chr4g0031731 24.910 277 186 7 272 531 255 526 1.99e-13 73.6
Msa0537380 MtrunA17_Chr2g0329591 22.222 369 245 10 290 626 93 451 2.22e-13 72.8
Msa0537380 MtrunA17_Chr2g0328401 22.973 222 153 6 231 442 250 463 6.19e-13 72.0
Msa0537380 MtrunA17_Chr4g0031721 18.900 418 303 11 236 625 274 683 3.53e-12 69.7
Msa0537380 MtrunA17_Chr5g0396491 27.746 173 117 3 272 440 57 225 2.42e-11 66.6
Msa0537380 MtrunA17_Chr4g0038851 31.720 186 111 6 272 448 49 227 3.94e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0537380 AT4G00150.1 41.890 635 278 16 4 627 1 555 7.95e-134 404
Msa0537380 AT2G45160.1 39.376 673 326 24 4 627 1 640 1.69e-112 351
Msa0537380 AT3G60630.1 39.728 662 322 25 4 627 1 623 1.04e-109 343
Msa0537380 AT4G36710.1 32.181 376 222 11 270 626 124 485 6.50e-52 186
Msa0537380 AT5G66770.1 29.534 386 247 13 258 626 207 584 4.25e-37 146
Msa0537380 AT2G04890.1 28.495 372 237 9 272 626 54 413 1.61e-36 142
Msa0537380 AT3G50650.1 27.907 387 238 12 264 626 173 542 1.06e-30 127
Msa0537380 AT2G01570.1 26.902 368 245 9 272 626 225 581 2.30e-30 126
Msa0537380 AT5G48150.1 24.403 377 268 8 265 626 116 490 1.78e-29 122
Msa0537380 AT5G48150.4 24.403 377 268 8 265 626 116 490 1.78e-29 122
Msa0537380 AT5G48150.2 24.403 377 268 8 265 626 116 490 1.78e-29 122
Msa0537380 AT5G48150.3 24.403 377 268 8 265 626 116 490 1.78e-29 122
Msa0537380 AT3G03450.1 25.410 366 258 6 272 626 184 545 1.99e-29 123
Msa0537380 AT5G17490.1 27.717 368 241 10 272 626 161 516 2.75e-29 122
Msa0537380 AT3G54220.1 27.198 364 239 7 276 625 298 649 5.13e-29 122
Msa0537380 AT4G17230.1 27.297 381 251 10 265 626 152 525 6.39e-29 121
Msa0537380 AT4G17230.2 27.297 381 251 10 265 626 152 525 6.39e-29 121
Msa0537380 AT1G66350.1 25.272 368 247 10 272 627 156 507 3.17e-28 119
Msa0537380 AT1G14920.1 25.549 364 255 8 272 626 173 529 4.37e-28 119
Msa0537380 AT1G50600.3 23.786 412 271 10 238 626 135 526 2.11e-27 117
Msa0537380 AT1G21450.1 24.865 370 261 7 272 626 226 593 3.82e-27 116
Msa0537380 AT1G50600.1 23.786 412 271 10 238 626 206 597 6.76e-27 116
Msa0537380 AT1G50600.2 23.786 412 271 10 238 626 210 601 8.70e-27 115
Msa0537380 AT5G41920.1 25.401 374 243 9 272 626 44 400 6.16e-26 110
Msa0537380 AT1G63100.2 25.849 383 238 13 277 625 283 653 3.57e-22 101
Msa0537380 AT1G63100.1 25.849 383 238 13 277 625 258 628 4.00e-22 101
Msa0537380 AT5G59450.1 22.520 373 269 7 272 626 228 598 1.06e-19 93.6
Msa0537380 AT4G08250.1 26.246 301 203 10 339 625 181 476 3.00e-18 88.6
Msa0537380 AT1G55580.1 24.590 305 215 6 337 626 141 445 4.44e-18 87.8
Msa0537380 AT3G46600.1 22.642 371 267 8 272 626 213 579 1.55e-16 83.6
Msa0537380 AT4G37650.1 20.312 384 276 8 272 626 147 529 3.84e-16 82.4
Msa0537380 AT3G46600.3 22.642 371 267 8 272 626 181 547 4.03e-16 82.4
Msa0537380 AT3G46600.2 22.642 371 267 8 272 626 5 371 4.50e-16 80.9
Msa0537380 AT1G07530.1 20.531 414 310 10 231 625 351 764 4.96e-16 82.4
Msa0537380 AT1G07520.3 22.487 378 257 12 276 625 324 693 1.91e-14 77.4
Msa0537380 AT1G07520.1 22.487 378 257 12 276 625 323 692 1.93e-14 77.4
Msa0537380 AT1G07520.2 26.238 202 138 5 276 468 159 358 3.18e-14 76.3
Msa0537380 AT1G07520.4 26.238 202 138 5 276 468 159 358 3.18e-14 76.3
Msa0537380 AT2G29065.1 21.925 374 265 10 276 625 257 627 9.71e-13 71.6
Msa0537380 AT1G50420.1 29.016 193 120 4 272 451 58 246 1.73e-12 70.5

Find 149 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATGTTTGTTAACTAAA+TGG 0.126757 4_1:+15762515 Msa0537380:three_prime_UTR
TTACACAACAATACACTTTA+AGG 0.131559 4_1:+15760085 Msa0537380:five_prime_UTR
AAAATAAAGATTGAGTATTT+TGG 0.160504 4_1:-15759803 None:intergenic
TGTAATGCCTTTCAATCTTT+TGG 0.183368 4_1:-15762136 None:intergenic
AATTGCGTGCTGAGATATTT+TGG 0.187631 4_1:-15759894 None:intergenic
TTACAATGTGTTACCGCTTT+TGG 0.235424 4_1:+15761113 Msa0537380:CDS
GATAAGTGGCTAATTATTAA+AGG 0.259137 4_1:+15762405 Msa0537380:exon
TTGAAATTCCTCAAAAGTTA+AGG 0.300516 4_1:-15760536 None:intergenic
CCATTTAGTTAACAAACATT+AGG 0.311269 4_1:-15762515 None:intergenic
CATGTTATTGATTTCGATAT+CGG 0.319001 4_1:+15761642 Msa0537380:CDS
GACATTGTTGAAGATGAAAA+TGG 0.338654 4_1:-15760724 None:intergenic
TCCAAAGTTACGACCACTTT+CGG 0.339309 4_1:-15761999 None:intergenic
TTAAAGGTTGAAATTTCTTA+AGG 0.345571 4_1:+15762421 Msa0537380:three_prime_UTR
ATTGTTTACAGAAACTGATT+TGG 0.353647 4_1:-15759700 None:intergenic
TCTTGTTCTAAGACTGTGTT+TGG 0.356645 4_1:+15762720 Msa0537380:three_prime_UTR
TGATGGATTACTTATGAAAC+TGG 0.357205 4_1:-15761937 None:intergenic
TAAACACTCGATCGGGTGTT+TGG 0.372173 4_1:+15762776 Msa0537380:three_prime_UTR
CATTTAGTTAACAAACATTA+GGG 0.374065 4_1:-15762514 None:intergenic
CTTCCTTTCTTGTGCTATGC+TGG 0.377991 4_1:+15762342 Msa0537380:CDS
ATTGATTTCGATATCGGGTT+TGG 0.379458 4_1:+15761648 Msa0537380:CDS
CTAATGTTTGTTAACTAAAT+GGG 0.381359 4_1:+15762516 Msa0537380:three_prime_UTR
TGAAATTCCTCAAAAGTTAA+GGG 0.383228 4_1:-15760535 None:intergenic
GGTTCAAGCGCAAGGGATAT+TGG 0.384808 4_1:+15761374 Msa0537380:CDS
ATCAACCTCAGCAACAAAAT+TGG 0.386235 4_1:+15760629 Msa0537380:CDS
ACTAATTATGGTTATGATAA+GGG 0.386415 4_1:-15759831 None:intergenic
ACAATAGTAGAAACTAATTA+TGG 0.391195 4_1:-15759843 None:intergenic
TGAATGAAGCATTAACTGTA+AGG 0.398966 4_1:-15761466 None:intergenic
AACTAATTATGGTTATGATA+AGG 0.416365 4_1:-15759832 None:intergenic
AGGAACATGTTTCTTCAGTC+TGG 0.417336 4_1:+15762224 Msa0537380:CDS
AGCTGAGTGTTTGGTTCAAA+GGG 0.419565 4_1:+15762286 Msa0537380:CDS
GTGGTATGAGAATGGATGAT+TGG 0.425628 4_1:+15760872 Msa0537380:CDS
AATTAGCTGTAATTTGTGTT+TGG 0.426950 4_1:+15762829 Msa0537380:three_prime_UTR
GGAAGCTCAAGCTGAGTGTT+TGG 0.430829 4_1:+15762277 Msa0537380:CDS
CAAATATACTCTGCTGAAGC+TGG 0.434387 4_1:-15761308 None:intergenic
ATTTCAAGTGAAGGGAATGT+TGG 0.436223 4_1:+15760552 Msa0537380:CDS
TTACTTATGAAACTGGAAAC+AGG 0.436478 4_1:-15761930 None:intergenic
AATATCCCTTGCGCTTGAAC+CGG 0.438162 4_1:-15761372 None:intergenic
TCAAGCCCTCATTGAAGCCT+TGG 0.443453 4_1:+15761602 Msa0537380:CDS
GCCGAAAGTGGTCGTAACTT+TGG 0.444136 4_1:+15761998 Msa0537380:CDS
CTTTGAAAAGGCTTACCAAT+TGG 0.446191 4_1:-15761420 None:intergenic
CTCAATCTCGTTGCAAGAAG+AGG 0.446647 4_1:-15761754 None:intergenic
ATGTTATTGATTTCGATATC+GGG 0.446925 4_1:+15761643 Msa0537380:CDS
TTGTAATTCTCAGGAATGAA+TGG 0.453236 4_1:-15761096 None:intergenic
TGGTGGTGGTGGTATGAGAA+TGG 0.455369 4_1:+15760864 Msa0537380:CDS
AAGCTGAGTGTTTGGTTCAA+AGG 0.455607 4_1:+15762285 Msa0537380:CDS
GGTAACACATTGTAATTCTC+AGG 0.461882 4_1:-15761105 None:intergenic
TAGAAAGAAGCCCTTTGAAA+AGG 0.471306 4_1:-15761432 None:intergenic
AAGTTGGCAAACTGAAGAAC+AGG 0.472756 4_1:-15761570 None:intergenic
AACTCATCTCAGTTTCAACT+TGG 0.473456 4_1:+15762375 Msa0537380:CDS
CTTCACATTCAGCAAATTCA+CGG 0.474423 4_1:+15762256 Msa0537380:CDS
GAAGATGAAAATGGAGAACT+AGG 0.474745 4_1:-15760715 None:intergenic
AAGGTTGAAATTTCTTAAGG+TGG 0.475998 4_1:+15762424 Msa0537380:three_prime_UTR
ATGGTTGAACATGGACGCTT+CGG 0.477095 4_1:+15761047 Msa0537380:CDS
AAAGAACAAGGACAAAGCTT+AGG 0.481534 4_1:-15759733 None:intergenic
AATCACCAGCTCTCACCAAT+TGG 0.485962 4_1:+15761405 Msa0537380:CDS
AGTTAACAAACATTAGGGTA+TGG 0.486346 4_1:-15762509 None:intergenic
CTTGCCATCATGTCCTCTAC+CGG 0.490539 4_1:+15761866 Msa0537380:CDS
GGCTTGATTACAAGTAAAGT+TGG 0.491191 4_1:-15761586 None:intergenic
CAGTTAATGCTTCATTCAAA+CGG 0.491869 4_1:+15761471 Msa0537380:CDS
TTTGAGGAATTTCAAGTGAA+GGG 0.497110 4_1:+15760544 Msa0537380:CDS
GCTGATAGAAGCTGGTAATC+CGG 0.498189 4_1:+15761353 Msa0537380:CDS
CCTTTCCAAGGCTTCAATGA+GGG 0.498450 4_1:-15761607 None:intergenic
TTCAAATAACAATAGTTCAA+TGG 0.500751 4_1:+15760780 Msa0537380:CDS
TGCTCAGATATCAATGAGGC+AGG 0.504902 4_1:-15759756 None:intergenic
TTTGATAGTAATGAAGCCAT+TGG 0.505073 4_1:+15761897 Msa0537380:CDS
GTAATTTGTCACGCTGGTTG+TGG 0.506339 4_1:-15762193 None:intergenic
CTGAAGAACAGGTGATATCT+CGG 0.507582 4_1:-15761559 None:intergenic
TCCAATTGCGAAGCAGCAAA+AGG 0.508239 4_1:+15761251 Msa0537380:CDS
GATGTTGAAGACCCTTATGC+TGG 0.508840 4_1:+15760934 Msa0537380:CDS
TCTTGAATCAAGAACTGAAG+TGG 0.511894 4_1:-15760686 None:intergenic
CAACCGACGACTGCTGTTGT+TGG 0.513401 4_1:-15761227 None:intergenic
TGTTATGTAAACACTCGATC+GGG 0.513637 4_1:+15762769 Msa0537380:three_prime_UTR
AACTTGGAGATGTTGATAAG+TGG 0.518300 4_1:+15762391 Msa0537380:exon
TCCACTTGAAATCCTCTCAC+AGG 0.520356 4_1:-15762311 None:intergenic
CTGGTCAAGAAGTGTTTGCT+AGG 0.526401 4_1:+15761139 Msa0537380:CDS
TATGATGTCTCTTTGAACAT+TGG 0.534220 4_1:+15762572 Msa0537380:three_prime_UTR
TTCTTGTGCTATGCTGGCAG+AGG 0.535704 4_1:+15762348 Msa0537380:CDS
ATGTTATGTAAACACTCGAT+CGG 0.535920 4_1:+15762768 Msa0537380:three_prime_UTR
CTGGATGCTTGCATCATCTC+CGG 0.537282 4_1:-15761289 None:intergenic
CTGCCAGCATAGCACAAGAA+AGG 0.540587 4_1:-15762345 None:intergenic
TGAACGACATTGGTGGGAAG+AGG 0.544276 4_1:-15762047 None:intergenic
ATGTCATCTTCTCATGGTAG+TGG 0.544818 4_1:+15760742 Msa0537380:CDS
TGGTATGAGAATGGATGATT+GGG 0.551007 4_1:+15760873 Msa0537380:CDS
ATCTTGCAAAGTGGTGGTTG+TGG 0.551252 4_1:+15760967 Msa0537380:CDS
TGCTAGGAGACATCAGCAGC+AGG 0.551740 4_1:+15761155 Msa0537380:CDS
GGTAATCCGGTTCAAGCGCA+AGG 0.552039 4_1:+15761366 Msa0537380:CDS
TGTTTGTTAACTAAATGGGT+TGG 0.553496 4_1:+15762520 Msa0537380:three_prime_UTR
AATTCGATCGAACCTTTCCA+AGG 0.555850 4_1:-15761619 None:intergenic
GGTAGTGGTAGTAATGGTAA+TGG 0.556024 4_1:+15760757 Msa0537380:CDS
GCTTACCAATTGGTGAGAGC+TGG 0.557459 4_1:-15761410 None:intergenic
AAGGTGAGTTCTAGTACTAC+CGG 0.560768 4_1:+15761270 Msa0537380:CDS
CCCTCATTGAAGCCTTGGAA+AGG 0.561376 4_1:+15761607 Msa0537380:CDS
ACTGCTGAGCTGATAGAAGC+TGG 0.561856 4_1:+15761345 Msa0537380:CDS
AAAGCAGCTAAGGCCGAAAG+TGG 0.562649 4_1:+15761986 Msa0537380:CDS
ATGTACTCCAAAAGATTGAA+AGG 0.570089 4_1:+15762129 Msa0537380:CDS
GTTCAAAGGGCACCTGTGAG+AGG 0.570717 4_1:+15762299 Msa0537380:CDS
AGAGCCACAGGGAAGCATGA+TGG 0.571215 4_1:-15761954 None:intergenic
CATCATTTGAAAGATGAGCA+AGG 0.573001 4_1:-15760816 None:intergenic
TCATGATGATGAGGAAACAA+TGG 0.573020 4_1:-15761189 None:intergenic
TCTCATGGTAGTGGTAGTAA+TGG 0.576556 4_1:+15760751 Msa0537380:CDS
TCAATCTCGTTGCAAGAAGA+GGG 0.578280 4_1:-15761753 None:intergenic
CGTGAATTTGCTGAATGTGA+AGG 0.578961 4_1:-15762255 None:intergenic
ACCATCAACAAAATCATCCT+CGG 0.579390 4_1:+15762167 Msa0537380:CDS
TGAAGAAACATGTTCCTCCA+TGG 0.581165 4_1:-15762218 None:intergenic
CAGCATAGCACAAGAAAGGA+AGG 0.582661 4_1:-15762341 None:intergenic
TCAAAGAAATGACCCGGTAG+AGG 0.583745 4_1:-15761879 None:intergenic
AGAACATGAACGACATTGGT+GGG 0.584347 4_1:-15762053 None:intergenic
CTTGAATCAAGAACTGAAGT+GGG 0.584678 4_1:-15760685 None:intergenic
TGGATCATCAACAACAACAA+TGG 0.586807 4_1:+15761028 Msa0537380:CDS
ACCTTTCCAAGGCTTCAATG+AGG 0.587226 4_1:-15761608 None:intergenic
TCAACAATGTCATCTTCTCA+TGG 0.588934 4_1:+15760736 Msa0537380:CDS
AACAAAATCTTGCAAAGTGG+TGG 0.589673 4_1:+15760961 Msa0537380:CDS
AAGAACATGAACGACATTGG+TGG 0.589769 4_1:-15762054 None:intergenic
TGGGAAGAGGAACATCCATT+CGG 0.591209 4_1:-15762034 None:intergenic
GTGAATTTGCTGAATGTGAA+GGG 0.591860 4_1:-15762254 None:intergenic
TTCAAACGGTAACAATCTCA+CGG 0.592949 4_1:+15761485 Msa0537380:CDS
AACAGGAAAGTTCACACCAA+TGG 0.593516 4_1:-15761913 None:intergenic
TTGAAGAACATGAACGACAT+TGG 0.594485 4_1:-15762057 None:intergenic
AGCGTGACAAATTACCTCCA+TGG 0.597025 4_1:+15762201 Msa0537380:CDS
GAGATTGCACTAAGAAGTAA+CGG 0.597858 4_1:+15761696 Msa0537380:CDS
CAATGAGGCAGGAAAGAACA+AGG 0.601819 4_1:-15759745 None:intergenic
GATAACAGAGAAACAGTGAA+AGG 0.602580 4_1:-15762613 None:intergenic
TAAAGAAGATTATTGCTATG+TGG 0.612360 4_1:+15760660 Msa0537380:CDS
ACAACAACAATGGTTGAACA+TGG 0.613222 4_1:+15761038 Msa0537380:CDS
TTGCCATCATGTCCTCTACC+GGG 0.614713 4_1:+15761867 Msa0537380:CDS
TGACCCGGTAGAGGACATGA+TGG 0.615427 4_1:-15761870 None:intergenic
ATGGAGGTAATTTGTCACGC+TGG 0.629161 4_1:-15762199 None:intergenic
AAGATGAAAATGGAGAACTA+GGG 0.633076 4_1:-15760714 None:intergenic
ACAGCAGTAATCTTAAGTGA+AGG 0.636223 4_1:-15761723 None:intergenic
GTAATCCGGTTCAAGCGCAA+GGG 0.638818 4_1:+15761367 Msa0537380:CDS
AAGCGCAAGGGATATTGGCG+CGG 0.648472 4_1:+15761379 Msa0537380:CDS
AGATGGATGCGTGCATACGT+AGG 0.650132 4_1:-15759923 None:intergenic
TGAACTCAAACGACATGTTG+AGG 0.652289 4_1:-15761818 None:intergenic
ACCTGTGAGAGGATTTCAAG+TGG 0.654432 4_1:+15762310 Msa0537380:CDS
TGCTGCAGATCATGATGATG+AGG 0.657062 4_1:-15761198 None:intergenic
ATGGACGCTTCGGTTCAACA+AGG 0.660128 4_1:+15761057 Msa0537380:CDS
ATATCGGGTTTGGAGTACAA+TGG 0.666500 4_1:+15761658 Msa0537380:CDS
TTACTATCAAAGAAATGACC+CGG 0.669847 4_1:-15761885 None:intergenic
CACGCTGGTTGTGGTGACCG+AGG 0.670125 4_1:-15762184 None:intergenic
TCTTGACCAGAATCCAAAAG+CGG 0.685854 4_1:-15761126 None:intergenic
TGGACGCTTCGGTTCAACAA+GGG 0.687015 4_1:+15761058 Msa0537380:CDS
TTACCAACAACAGCAGTCGT+CGG 0.697756 4_1:+15761224 Msa0537380:CDS
ATTTGGACATGTCAGAGACA+AGG 0.701043 4_1:-15759683 None:intergenic
AGAAACATGTTCCTCCATGG+AGG 0.701239 4_1:-15762215 None:intergenic
AAAATGCTCAGATATCAATG+AGG 0.702130 4_1:-15759760 None:intergenic
TAATCCATCATGCTTCCCTG+TGG 0.706732 4_1:+15761950 Msa0537380:CDS
ATGAGAATGGATGATTGGGA+AGG 0.712507 4_1:+15760877 Msa0537380:CDS
TTGAACAAAATCTTGCAAAG+TGG 0.719051 4_1:+15760958 Msa0537380:CDS
GTGACAAATTACCTCCATGG+AGG 0.762900 4_1:+15762204 Msa0537380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTAAATTGTTTAAT+GGG - chr4_1:15759872-15759891 None:intergenic 10.0%
!!! TTGTTTTTTAAATTGTTTAA+TGG - chr4_1:15759873-15759892 None:intergenic 10.0%
!!! AAAAGATGATTTTTTTTATT+GGG - chr4_1:15760201-15760220 None:intergenic 10.0%
!!! AAAAAGATGATTTTTTTTAT+TGG - chr4_1:15760202-15760221 None:intergenic 10.0%
!!! AAAATAAAGATTGAGTATTT+TGG - chr4_1:15759806-15759825 None:intergenic 15.0%
!!! AAAGATGATTTTTTTTATTG+GGG - chr4_1:15760200-15760219 None:intergenic 15.0%
!!! AAAAATCATCTTTTTTCATA+AGG + chr4_1:15760207-15760226 Msa0537380:intron 15.0%
!!! AAAATCATCTTTTTTCATAA+GGG + chr4_1:15760208-15760227 Msa0537380:intron 15.0%
!!! ATTTTGAAAATGAAACTAAT+CGG - chr4_1:15761519-15761538 None:intergenic 15.0%
!!! ATTAGTTTCATTTTCAAAAT+TGG + chr4_1:15761519-15761538 Msa0537380:CDS 15.0%
!!! ATTGTTTGTGTAATTTTTTT+AGG + chr4_1:15762472-15762491 Msa0537380:three_prime_UTR 15.0%
!! ACTAATTATGGTTATGATAA+GGG - chr4_1:15759834-15759853 None:intergenic 20.0%
!! AACTAATTATGGTTATGATA+AGG - chr4_1:15759835-15759854 None:intergenic 20.0%
!! ACAATAGTAGAAACTAATTA+TGG - chr4_1:15759846-15759865 None:intergenic 20.0%
!!! AAAAATTCTTTTAGCCAAAT+GGG - chr4_1:15760298-15760317 None:intergenic 20.0%
!!! AAAAAATTCTTTTAGCCAAA+TGG - chr4_1:15760299-15760318 None:intergenic 20.0%
!! TTGAAATCAAATTTGTATTC+TGG + chr4_1:15760338-15760357 Msa0537380:intron 20.0%
!! TGAAATCAAATTTGTATTCT+GGG + chr4_1:15760339-15760358 Msa0537380:intron 20.0%
!!! TTGTTTTTGTTTTTAGATGA+AGG + chr4_1:15760507-15760526 Msa0537380:intron 20.0%
!! TTCAAATAACAATAGTTCAA+TGG + chr4_1:15760780-15760799 Msa0537380:CDS 20.0%
!! TTAAAGGTTGAAATTTCTTA+AGG + chr4_1:15762421-15762440 Msa0537380:three_prime_UTR 20.0%
!! CATTTAGTTAACAAACATTA+GGG - chr4_1:15762517-15762536 None:intergenic 20.0%
!!! CTAATGTTTGTTAACTAAAT+GGG + chr4_1:15762516-15762535 Msa0537380:three_prime_UTR 20.0%
! ATTGTTTACAGAAACTGATT+TGG - chr4_1:15759703-15759722 None:intergenic 25.0%
! TTACACAACAATACACTTTA+AGG + chr4_1:15760085-15760104 Msa0537380:five_prime_UTR 25.0%
! GAAATCAAATTTGTATTCTG+GGG + chr4_1:15760340-15760359 Msa0537380:intron 25.0%
! TGAAATTCCTCAAAAGTTAA+GGG - chr4_1:15760538-15760557 None:intergenic 25.0%
! TTGAAATTCCTCAAAAGTTA+AGG - chr4_1:15760539-15760558 None:intergenic 25.0%
! TAAAGAAGATTATTGCTATG+TGG + chr4_1:15760660-15760679 Msa0537380:CDS 25.0%
!!! TCACTTTTGAGGTTAATTAT+GGG + chr4_1:15760910-15760929 Msa0537380:CDS 25.0%
!!! TCTCAAAATGTTGATTTTCA+TGG + chr4_1:15760991-15761010 Msa0537380:CDS 25.0%
!!! CATGTTATTGATTTCGATAT+CGG + chr4_1:15761642-15761661 Msa0537380:CDS 25.0%
!!! ATGTTATTGATTTCGATATC+GGG + chr4_1:15761643-15761662 Msa0537380:CDS 25.0%
!!! ATACTGACTCAAATTTTCTT+GGG - chr4_1:15761790-15761809 None:intergenic 25.0%
!!! TTCATTTTTTAAAGCAGCTA+AGG + chr4_1:15761976-15761995 Msa0537380:CDS 25.0%
! GATAAGTGGCTAATTATTAA+AGG + chr4_1:15762405-15762424 Msa0537380:exon 25.0%
! CCATTTAGTTAACAAACATT+AGG - chr4_1:15762518-15762537 None:intergenic 25.0%
!! CCTAATGTTTGTTAACTAAA+TGG + chr4_1:15762515-15762534 Msa0537380:three_prime_UTR 25.0%
! GTAAGAAAAATGAACAGTTT+AGG + chr4_1:15762659-15762678 Msa0537380:three_prime_UTR 25.0%
! AAAAAAGAATGCTCTCTTTA+TGG + chr4_1:15762683-15762702 Msa0537380:three_prime_UTR 25.0%
AAAATGCTCAGATATCAATG+AGG - chr4_1:15759763-15759782 None:intergenic 30.0%
!! GTGTTGTGTTTTTGTTAAGA+TGG - chr4_1:15759943-15759962 None:intergenic 30.0%
! GAACAAAGGTGTAAACTTTA+TGG + chr4_1:15760395-15760414 Msa0537380:intron 30.0%
!! TTTGAGACTTTTGAGTCATA+TGG + chr4_1:15760421-15760440 Msa0537380:intron 30.0%
!! TTGAGACTTTTGAGTCATAT+GGG + chr4_1:15760422-15760441 Msa0537380:intron 30.0%
!! TTTTGAGTCATATGGGTTAT+TGG + chr4_1:15760429-15760448 Msa0537380:intron 30.0%
!! TTTTGAGGAATTTCAAGTGA+AGG + chr4_1:15760543-15760562 Msa0537380:CDS 30.0%
! TTTGAGGAATTTCAAGTGAA+GGG + chr4_1:15760544-15760563 Msa0537380:CDS 30.0%
AAGATGAAAATGGAGAACTA+GGG - chr4_1:15760717-15760736 None:intergenic 30.0%
GACATTGTTGAAGATGAAAA+TGG - chr4_1:15760727-15760746 None:intergenic 30.0%
GAGAATAGTGAAGAAAAATG+TGG + chr4_1:15760838-15760857 Msa0537380:CDS 30.0%
AATAGTGAAGAAAAATGTGG+TGG + chr4_1:15760841-15760860 Msa0537380:CDS 30.0%
!!! GTCACTTTTGAGGTTAATTA+TGG + chr4_1:15760909-15760928 Msa0537380:CDS 30.0%
! TTTTGTTCAATCCAGCATAA+GGG - chr4_1:15760948-15760967 None:intergenic 30.0%
! ATTTTGTTCAATCCAGCATA+AGG - chr4_1:15760949-15760968 None:intergenic 30.0%
TTGAACAAAATCTTGCAAAG+TGG + chr4_1:15760958-15760977 Msa0537380:CDS 30.0%
!!! CAAAATGTTGATTTTCATGG+TGG + chr4_1:15760994-15761013 Msa0537380:CDS 30.0%
TTGTAATTCTCAGGAATGAA+TGG - chr4_1:15761099-15761118 None:intergenic 30.0%
! AATTGGTAAGCCTTTTCAAA+GGG + chr4_1:15761422-15761441 Msa0537380:CDS 30.0%
! TGAATGAAGCATTAACTGTA+AGG - chr4_1:15761469-15761488 None:intergenic 30.0%
CAGTTAATGCTTCATTCAAA+CGG + chr4_1:15761471-15761490 Msa0537380:CDS 30.0%
!!! CATACTGACTCAAATTTTCT+TGG - chr4_1:15761791-15761810 None:intergenic 30.0%
TTACTATCAAAGAAATGACC+CGG - chr4_1:15761888-15761907 None:intergenic 30.0%
! TTTGATAGTAATGAAGCCAT+TGG + chr4_1:15761897-15761916 Msa0537380:CDS 30.0%
TTACTTATGAAACTGGAAAC+AGG - chr4_1:15761933-15761952 None:intergenic 30.0%
!! TGATGGATTACTTATGAAAC+TGG - chr4_1:15761940-15761959 None:intergenic 30.0%
TTAAAAAATGAAGAGCCACA+GGG - chr4_1:15761968-15761987 None:intergenic 30.0%
TTTAAAAAATGAAGAGCCAC+AGG - chr4_1:15761969-15761988 None:intergenic 30.0%
ATGTACTCCAAAAGATTGAA+AGG + chr4_1:15762129-15762148 Msa0537380:CDS 30.0%
! TGTAATGCCTTTCAATCTTT+TGG - chr4_1:15762139-15762158 None:intergenic 30.0%
AAGGTTGAAATTTCTTAAGG+TGG + chr4_1:15762424-15762443 Msa0537380:three_prime_UTR 30.0%
AGTTAACAAACATTAGGGTA+TGG - chr4_1:15762512-15762531 None:intergenic 30.0%
! TGTTTGTTAACTAAATGGGT+TGG + chr4_1:15762520-15762539 Msa0537380:three_prime_UTR 30.0%
TATGATGTCTCTTTGAACAT+TGG + chr4_1:15762572-15762591 Msa0537380:three_prime_UTR 30.0%
ATGTTATGTAAACACTCGAT+CGG + chr4_1:15762768-15762787 Msa0537380:three_prime_UTR 30.0%
AAAGAACAAGGACAAAGCTT+AGG - chr4_1:15759736-15759755 None:intergenic 35.0%
! AATTGCGTGCTGAGATATTT+TGG - chr4_1:15759897-15759916 None:intergenic 35.0%
ATCAAGATTCAAGACCCATT+TGG + chr4_1:15760281-15760300 Msa0537380:intron 35.0%
!! AAATTTGTATTCTGGGGTAG+TGG + chr4_1:15760346-15760365 Msa0537380:intron 35.0%
!!! CATATGGGTTATTGGTTTTG+TGG + chr4_1:15760437-15760456 Msa0537380:intron 35.0%
! ATTTCAAGTGAAGGGAATGT+TGG + chr4_1:15760552-15760571 Msa0537380:CDS 35.0%
ATCAACCTCAGCAACAAAAT+TGG + chr4_1:15760629-15760648 Msa0537380:CDS 35.0%
! AATGACCAATTTTGTTGCTG+AGG - chr4_1:15760637-15760656 None:intergenic 35.0%
CTTGAATCAAGAACTGAAGT+GGG - chr4_1:15760688-15760707 None:intergenic 35.0%
TCTTGAATCAAGAACTGAAG+TGG - chr4_1:15760689-15760708 None:intergenic 35.0%
GAAGATGAAAATGGAGAACT+AGG - chr4_1:15760718-15760737 None:intergenic 35.0%
TCAACAATGTCATCTTCTCA+TGG + chr4_1:15760736-15760755 Msa0537380:CDS 35.0%
CATCATTTGAAAGATGAGCA+AGG - chr4_1:15760819-15760838 None:intergenic 35.0%
TGGTATGAGAATGGATGATT+GGG + chr4_1:15760873-15760892 Msa0537380:CDS 35.0%
AACAAAATCTTGCAAAGTGG+TGG + chr4_1:15760961-15760980 Msa0537380:CDS 35.0%
!! GTTGATTTTCATGGTGGTTT+TGG + chr4_1:15761000-15761019 Msa0537380:CDS 35.0%
TGGATCATCAACAACAACAA+TGG + chr4_1:15761028-15761047 Msa0537380:CDS 35.0%
ACAACAACAATGGTTGAACA+TGG + chr4_1:15761038-15761057 Msa0537380:CDS 35.0%
GGTAACACATTGTAATTCTC+AGG - chr4_1:15761108-15761127 None:intergenic 35.0%
! TTACAATGTGTTACCGCTTT+TGG + chr4_1:15761113-15761132 Msa0537380:CDS 35.0%
! TCATGATGATGAGGAAACAA+TGG - chr4_1:15761192-15761211 None:intergenic 35.0%
! CTTTGAAAAGGCTTACCAAT+TGG - chr4_1:15761423-15761442 None:intergenic 35.0%
! CAATTGGTAAGCCTTTTCAA+AGG + chr4_1:15761421-15761440 Msa0537380:CDS 35.0%
! TAGAAAGAAGCCCTTTGAAA+AGG - chr4_1:15761435-15761454 None:intergenic 35.0%
TTCAAACGGTAACAATCTCA+CGG + chr4_1:15761485-15761504 Msa0537380:CDS 35.0%
GGCTTGATTACAAGTAAAGT+TGG - chr4_1:15761589-15761608 None:intergenic 35.0%
! ATTGATTTCGATATCGGGTT+TGG + chr4_1:15761648-15761667 Msa0537380:CDS 35.0%
GAGATTGCACTAAGAAGTAA+CGG + chr4_1:15761696-15761715 Msa0537380:CDS 35.0%
ACAGCAGTAATCTTAAGTGA+AGG - chr4_1:15761726-15761745 None:intergenic 35.0%
TTGAAGAACATGAACGACAT+TGG - chr4_1:15762060-15762079 None:intergenic 35.0%
!!! TGATTTTGTTGATGGTTGGT+TGG - chr4_1:15762163-15762182 None:intergenic 35.0%
!!! AGGATGATTTTGTTGATGGT+TGG - chr4_1:15762167-15762186 None:intergenic 35.0%
ACCATCAACAAAATCATCCT+CGG + chr4_1:15762167-15762186 Msa0537380:CDS 35.0%
!! GTGAATTTGCTGAATGTGAA+GGG - chr4_1:15762257-15762276 None:intergenic 35.0%
CTTCACATTCAGCAAATTCA+CGG + chr4_1:15762256-15762275 Msa0537380:CDS 35.0%
AACTCATCTCAGTTTCAACT+TGG + chr4_1:15762375-15762394 Msa0537380:CDS 35.0%
! AACTTGGAGATGTTGATAAG+TGG + chr4_1:15762391-15762410 Msa0537380:exon 35.0%
GATAACAGAGAAACAGTGAA+AGG - chr4_1:15762616-15762635 None:intergenic 35.0%
!! TCTTGTTCTAAGACTGTGTT+TGG + chr4_1:15762720-15762739 Msa0537380:three_prime_UTR 35.0%
TGTTATGTAAACACTCGATC+GGG + chr4_1:15762769-15762788 Msa0537380:three_prime_UTR 35.0%
ATTTGGACATGTCAGAGACA+AGG - chr4_1:15759686-15759705 None:intergenic 40.0%
AGAGGGTAAGAAGAGAACAA+AGG + chr4_1:15760381-15760400 Msa0537380:intron 40.0%
ATGTCATCTTCTCATGGTAG+TGG + chr4_1:15760742-15760761 Msa0537380:CDS 40.0%
!! TCTCATGGTAGTGGTAGTAA+TGG + chr4_1:15760751-15760770 Msa0537380:CDS 40.0%
! GGTAGTGGTAGTAATGGTAA+TGG + chr4_1:15760757-15760776 Msa0537380:CDS 40.0%
AGTGAAGAAAAATGTGGTGG+TGG + chr4_1:15760844-15760863 Msa0537380:CDS 40.0%
GTGGTATGAGAATGGATGAT+TGG + chr4_1:15760872-15760891 Msa0537380:CDS 40.0%
ATGAGAATGGATGATTGGGA+AGG + chr4_1:15760877-15760896 Msa0537380:CDS 40.0%
!!! GTCAAGATCAGTCACTTTTG+AGG + chr4_1:15760899-15760918 Msa0537380:CDS 40.0%
!!! TCATGGTGGTTTTGGAGTTT+TGG + chr4_1:15761008-15761027 Msa0537380:CDS 40.0%
TCTTGACCAGAATCCAAAAG+CGG - chr4_1:15761129-15761148 None:intergenic 40.0%
! AAGGTGAGTTCTAGTACTAC+CGG + chr4_1:15761270-15761289 Msa0537380:CDS 40.0%
CAAATATACTCTGCTGAAGC+TGG - chr4_1:15761311-15761330 None:intergenic 40.0%
CTGAAGAACAGGTGATATCT+CGG - chr4_1:15761562-15761581 None:intergenic 40.0%
AAGTTGGCAAACTGAAGAAC+AGG - chr4_1:15761573-15761592 None:intergenic 40.0%
AATTCGATCGAACCTTTCCA+AGG - chr4_1:15761622-15761641 None:intergenic 40.0%
! ATATCGGGTTTGGAGTACAA+TGG + chr4_1:15761658-15761677 Msa0537380:CDS 40.0%
TCAATCTCGTTGCAAGAAGA+GGG - chr4_1:15761756-15761775 None:intergenic 40.0%
TGAACTCAAACGACATGTTG+AGG - chr4_1:15761821-15761840 None:intergenic 40.0%
AACAGGAAAGTTCACACCAA+TGG - chr4_1:15761916-15761935 None:intergenic 40.0%
TCCAAAGTTACGACCACTTT+CGG - chr4_1:15762002-15762021 None:intergenic 40.0%
AGAACATGAACGACATTGGT+GGG - chr4_1:15762056-15762075 None:intergenic 40.0%
AAGAACATGAACGACATTGG+TGG - chr4_1:15762057-15762076 None:intergenic 40.0%
!!! CAATCTTTTGGAGTACATCG+AGG - chr4_1:15762127-15762146 None:intergenic 40.0%
! ACCGAGGATGATTTTGTTGA+TGG - chr4_1:15762171-15762190 None:intergenic 40.0%
TGAAGAAACATGTTCCTCCA+TGG - chr4_1:15762221-15762240 None:intergenic 40.0%
AGGAACATGTTTCTTCAGTC+TGG + chr4_1:15762224-15762243 Msa0537380:CDS 40.0%
!! CGTGAATTTGCTGAATGTGA+AGG - chr4_1:15762258-15762277 None:intergenic 40.0%
! AAGCTGAGTGTTTGGTTCAA+AGG + chr4_1:15762285-15762304 Msa0537380:CDS 40.0%
! AGCTGAGTGTTTGGTTCAAA+GGG + chr4_1:15762286-15762305 Msa0537380:CDS 40.0%
CAATGAGGCAGGAAAGAACA+AGG - chr4_1:15759748-15759767 None:intergenic 45.0%
TGCTCAGATATCAATGAGGC+AGG - chr4_1:15759759-15759778 None:intergenic 45.0%
!!! TTCTGGGGTAGTGGATTTTG+TGG + chr4_1:15760355-15760374 Msa0537380:intron 45.0%
!!! TCTGGGGTAGTGGATTTTGT+GGG + chr4_1:15760356-15760375 Msa0537380:intron 45.0%
! GGCTTTGCCCTTAACTTTTG+AGG + chr4_1:15760528-15760547 Msa0537380:CDS 45.0%
!! GAAGAAAAATGTGGTGGTGG+TGG + chr4_1:15760847-15760866 Msa0537380:CDS 45.0%
GATGTTGAAGACCCTTATGC+TGG + chr4_1:15760934-15760953 Msa0537380:CDS 45.0%
ATCTTGCAAAGTGGTGGTTG+TGG + chr4_1:15760967-15760986 Msa0537380:CDS 45.0%
ATGGTTGAACATGGACGCTT+CGG + chr4_1:15761047-15761066 Msa0537380:CDS 45.0%
!! GTGTTACCGCTTTTGGATTC+TGG + chr4_1:15761120-15761139 Msa0537380:CDS 45.0%
!! CTGGTCAAGAAGTGTTTGCT+AGG + chr4_1:15761139-15761158 Msa0537380:CDS 45.0%
! TGCTGCAGATCATGATGATG+AGG - chr4_1:15761201-15761220 None:intergenic 45.0%
TTACCAACAACAGCAGTCGT+CGG + chr4_1:15761224-15761243 Msa0537380:CDS 45.0%
TCCAATTGCGAAGCAGCAAA+AGG + chr4_1:15761251-15761270 Msa0537380:CDS 45.0%
!! ACCTTTTGCTGCTTCGCAAT+TGG - chr4_1:15761255-15761274 None:intergenic 45.0%
GCTGATAGAAGCTGGTAATC+CGG + chr4_1:15761353-15761372 Msa0537380:CDS 45.0%
AATATCCCTTGCGCTTGAAC+CGG - chr4_1:15761375-15761394 None:intergenic 45.0%
AATCACCAGCTCTCACCAAT+TGG + chr4_1:15761405-15761424 Msa0537380:CDS 45.0%
CCTTTCCAAGGCTTCAATGA+GGG - chr4_1:15761610-15761629 None:intergenic 45.0%
ACCTTTCCAAGGCTTCAATG+AGG - chr4_1:15761611-15761630 None:intergenic 45.0%
CTCAATCTCGTTGCAAGAAG+AGG - chr4_1:15761757-15761776 None:intergenic 45.0%
TCAAAGAAATGACCCGGTAG+AGG - chr4_1:15761882-15761901 None:intergenic 45.0%
TAATCCATCATGCTTCCCTG+TGG + chr4_1:15761950-15761969 Msa0537380:CDS 45.0%
TGGGAAGAGGAACATCCATT+CGG - chr4_1:15762037-15762056 None:intergenic 45.0%
! GTAATTTGTCACGCTGGTTG+TGG - chr4_1:15762196-15762215 None:intergenic 45.0%
! ATGGAGGTAATTTGTCACGC+TGG - chr4_1:15762202-15762221 None:intergenic 45.0%
AGCGTGACAAATTACCTCCA+TGG + chr4_1:15762201-15762220 Msa0537380:CDS 45.0%
GTGACAAATTACCTCCATGG+AGG + chr4_1:15762204-15762223 Msa0537380:CDS 45.0%
AGAAACATGTTCCTCCATGG+AGG - chr4_1:15762218-15762237 None:intergenic 45.0%
ACCTGTGAGAGGATTTCAAG+TGG + chr4_1:15762310-15762329 Msa0537380:CDS 45.0%
TCCACTTGAAATCCTCTCAC+AGG - chr4_1:15762314-15762333 None:intergenic 45.0%
CAGCATAGCACAAGAAAGGA+AGG - chr4_1:15762344-15762363 None:intergenic 45.0%
CTTCCTTTCTTGTGCTATGC+TGG + chr4_1:15762342-15762361 Msa0537380:CDS 45.0%
TAAACACTCGATCGGGTGTT+TGG + chr4_1:15762776-15762795 Msa0537380:three_prime_UTR 45.0%
!! ACAAAAAAAATAAAAAAAAA+AGG - chr4_1:15760128-15760147 None:intergenic 5.0%
AGATGGATGCGTGCATACGT+AGG - chr4_1:15759926-15759945 None:intergenic 50.0%
!!! CTGGGGTAGTGGATTTTGTG+GGG + chr4_1:15760357-15760376 Msa0537380:intron 50.0%
!!! TGGGGTAGTGGATTTTGTGG+GGG + chr4_1:15760358-15760377 Msa0537380:intron 50.0%
!!! TAGTGGATTTTGTGGGGGAG+AGG + chr4_1:15760363-15760382 Msa0537380:intron 50.0%
!! AGTGGATTTTGTGGGGGAGA+GGG + chr4_1:15760364-15760383 Msa0537380:intron 50.0%
!! GAAAAATGTGGTGGTGGTGG+TGG + chr4_1:15760850-15760869 Msa0537380:CDS 50.0%
!! TGGTGGTGGTGGTATGAGAA+TGG + chr4_1:15760864-15760883 Msa0537380:CDS 50.0%
ATGGACGCTTCGGTTCAACA+AGG + chr4_1:15761057-15761076 Msa0537380:CDS 50.0%
TGGACGCTTCGGTTCAACAA+GGG + chr4_1:15761058-15761077 Msa0537380:CDS 50.0%
CTGGATGCTTGCATCATCTC+CGG - chr4_1:15761292-15761311 None:intergenic 50.0%
ACTGCTGAGCTGATAGAAGC+TGG + chr4_1:15761345-15761364 Msa0537380:CDS 50.0%
GTAATCCGGTTCAAGCGCAA+GGG + chr4_1:15761367-15761386 Msa0537380:CDS 50.0%
GGTTCAAGCGCAAGGGATAT+TGG + chr4_1:15761374-15761393 Msa0537380:CDS 50.0%
GCTTACCAATTGGTGAGAGC+TGG - chr4_1:15761413-15761432 None:intergenic 50.0%
TCAAGCCCTCATTGAAGCCT+TGG + chr4_1:15761602-15761621 Msa0537380:CDS 50.0%
CCCTCATTGAAGCCTTGGAA+AGG + chr4_1:15761607-15761626 Msa0537380:CDS 50.0%
CTTGCCATCATGTCCTCTAC+CGG + chr4_1:15761866-15761885 Msa0537380:CDS 50.0%
TTGCCATCATGTCCTCTACC+GGG + chr4_1:15761867-15761886 Msa0537380:CDS 50.0%
AAAGCAGCTAAGGCCGAAAG+TGG + chr4_1:15761986-15762005 Msa0537380:CDS 50.0%
GCCGAAAGTGGTCGTAACTT+TGG + chr4_1:15761998-15762017 Msa0537380:CDS 50.0%
GGACAAAAACTGCGACCGAA+TGG + chr4_1:15762019-15762038 Msa0537380:CDS 50.0%
TGAACGACATTGGTGGGAAG+AGG - chr4_1:15762050-15762069 None:intergenic 50.0%
GGAAGCTCAAGCTGAGTGTT+TGG + chr4_1:15762277-15762296 Msa0537380:CDS 50.0%
CTGCCAGCATAGCACAAGAA+AGG - chr4_1:15762348-15762367 None:intergenic 50.0%
TTCTTGTGCTATGCTGGCAG+AGG + chr4_1:15762348-15762367 Msa0537380:CDS 50.0%
!! AAATGTGGTGGTGGTGGTGG+TGG + chr4_1:15760853-15760872 Msa0537380:CDS 55.0%
TGCTAGGAGACATCAGCAGC+AGG + chr4_1:15761155-15761174 Msa0537380:CDS 55.0%
CAACCGACGACTGCTGTTGT+TGG - chr4_1:15761230-15761249 None:intergenic 55.0%
GGTAATCCGGTTCAAGCGCA+AGG + chr4_1:15761366-15761385 Msa0537380:CDS 55.0%
AAGCGCAAGGGATATTGGCG+CGG + chr4_1:15761379-15761398 Msa0537380:CDS 55.0%
TGACCCGGTAGAGGACATGA+TGG - chr4_1:15761873-15761892 None:intergenic 55.0%
! AGAGCCACAGGGAAGCATGA+TGG - chr4_1:15761957-15761976 None:intergenic 55.0%
!! GTTCAAAGGGCACCTGTGAG+AGG + chr4_1:15762299-15762318 Msa0537380:CDS 55.0%
! CACGCTGGTTGTGGTGACCG+AGG - chr4_1:15762187-15762206 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 15759651 15762851 15759651 ID=Msa0537380;Name=Msa0537380
chr4_1 mRNA 15759651 15762851 15759651 ID=Msa0537380-mRNA-1;Parent=Msa0537380;Name=Msa0537380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=456|1|1|1|0|0.5|2|445|627
chr4_1 exon 15759651 15760106 15759651 ID=Msa0537380-mRNA-1:exon:4776;Parent=Msa0537380-mRNA-1
chr4_1 exon 15760523 15762851 15760523 ID=Msa0537380-mRNA-1:exon:4777;Parent=Msa0537380-mRNA-1
chr4_1 five_prime_UTR 15759651 15760106 15759651 ID=Msa0537380-mRNA-1:five_prime_utr;Parent=Msa0537380-mRNA-1
chr4_1 CDS 15760523 15762406 15760523 ID=Msa0537380-mRNA-1:cds;Parent=Msa0537380-mRNA-1
chr4_1 three_prime_UTR 15762407 15762851 15762407 ID=Msa0537380-mRNA-1:three_prime_utr;Parent=Msa0537380-mRNA-1
Gene Sequence

>Msa0537380

ATGAAGGCTTTGCCCTTAACTTTTGAGGAATTTCAAGTGAAGGGAATGTTGGATAATTTCTCTTCAACTTCAAATTCAGTTTCAGATTCATTTTCATTGCTTTTGAATCAACCTCAGCAACAAAATTGGTCATTAGATAAAGAAGATTATTGCTATGTGGAGCCCACTTCAGTTCTTGATTCAAGAAGAAGCCCTAGTTCTCCATTTTCATCTTCAACAATGTCATCTTCTCATGGTAGTGGTAGTAATGGTAATGGTTCAAATAACAATAGTTCAATGGTAGTTTCTGAGAACCTTGCTCATCTTTCAAATGATGAGAATAGTGAAGAAAAATGTGGTGGTGGTGGTGGTGGTATGAGAATGGATGATTGGGAAGGTCAAGATCAGTCACTTTTGAGGTTAATTATGGGAGATGTTGAAGACCCTTATGCTGGATTGAACAAAATCTTGCAAAGTGGTGGTTGTGGTTCTCAAAATGTTGATTTTCATGGTGGTTTTGGAGTTTTGGATCATCAACAACAACAATGGTTGAACATGGACGCTTCGGTTCAACAAGGGAATTACAATGTTTTTCCATTCATTCCTGAGAATTACAATGTGTTACCGCTTTTGGATTCTGGTCAAGAAGTGTTTGCTAGGAGACATCAGCAGCAGGAAACACAGCTTCCATTGTTTCCTCATCATCATGATCTGCAGCAGCATTACCAACAACAGCAGTCGTCGGTTGTTCCAATTGCGAAGCAGCAAAAGGTGAGTTCTAGTACTACCGGAGATGATGCAAGCATCCAGCTTCAGCAGAGTATATTTGATCAGCTATTCAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAAGCCTTTTCAAAGGGCTTCTTTCTACATGAAAGAAGCCTTACAGTTAATGCTTCATTCAAACGGTAACAATCTCACGGCTTTTTCGCCGATTAGTTTCATTTTCAAAATTGGAGCTTATAAGTCTTTTTCCGAGATATCACCTGTTCTTCAGTTTGCCAACTTTACTTGTAATCAAGCCCTCATTGAAGCCTTGGAAAGGTTCGATCGAATTCATGTTATTGATTTCGATATCGGGTTTGGAGTACAATGGTCATCTTTTATGCAAGAGATTGCACTAAGAAGTAACGGTAAGCCTTCACTTAAGATTACTGCTGTTGTATCTCCCTCTTCTTGCAACGAGATTGAGCTCAATTTCACCCAAGAAAATTTGAGTCAGTATGCAAAAGACCTCAACATGTCGTTTGAGTTCAACGTTTTGAACATTGAATCGTTGAACTTGCCATCATGTCCTCTACCGGGTCATTTCTTTGATAGTAATGAAGCCATTGGTGTGAACTTTCCTGTTTCCAGTTTCATAAGTAATCCATCATGCTTCCCTGTGGCTCTTCATTTTTTAAAGCAGCTAAGGCCGAAAGTGGTCGTAACTTTGGACAAAAACTGCGACCGAATGGATGTTCCTCTTCCCACCAATGTCGTTCATGTTCTTCAATGTTACTCAGCTTTACTTGAATCACTTGATGCTGTGAACGTGAACCTCGATGTACTCCAAAAGATTGAAAGGCATTACATCCAACCAACCATCAACAAAATCATCCTCGGTCACCACAACCAGCGTGACAAATTACCTCCATGGAGGAACATGTTTCTTCAGTCTGGTTTCTCTCCCTTCACATTCAGCAAATTCACGGAAGCTCAAGCTGAGTGTTTGGTTCAAAGGGCACCTGTGAGAGGATTTCAAGTGGAAAGAAAGCCTTCCTTTCTTGTGCTATGCTGGCAGAGGAAAGAACTCATCTCAGTTTCAACTTGGAGATGTTGA
Protein sequence

>Msa0537380

MKALPLTFEEFQVKGMLDNFSSTSNSVSDSFSLLLNQPQQQNWSLDKEDYCYVEPTSVLDSRRSPSSPFSSSTMSSSHGSGSNGNGSNNNSSMVVSENLAHLSNDENSEEKCGGGGGGMRMDDWEGQDQSLLRLIMGDVEDPYAGLNKILQSGGCGSQNVDFHGGFGVLDHQQQQWLNMDASVQQGNYNVFPFIPENYNVLPLLDSGQEVFARRHQQQETQLPLFPHHHDLQQHYQQQQSSVVPIAKQQKVSSSTTGDDASIQLQQSIFDQLFKTAELIEAGNPVQAQGILARLNHQLSPIGKPFQRASFYMKEALQLMLHSNGNNLTAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQALIEALERFDRIHVIDFDIGFGVQWSSFMQEIALRSNGKPSLKITAVVSPSSCNEIELNFTQENLSQYAKDLNMSFEFNVLNIESLNLPSCPLPGHFFDSNEAIGVNFPVSSFISNPSCFPVALHFLKQLRPKVVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDAVNVNLDVLQKIERHYIQPTINKIILGHHNQRDKLPPWRNMFLQSGFSPFTFSKFTEAQAECLVQRAPVRGFQVERKPSFLVLCWQRKELISVSTWRC*