AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0538660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538660 MtrunA17_Chr4g0013361 97.973 296 6 0 1 296 1 296 0.0 600
Msa0538660 MtrunA17_Chr8g0334881 41.692 331 131 8 1 292 1 308 3.83e-63 202
Msa0538660 MtrunA17_Chr1g0154031 54.386 114 50 2 10 122 76 188 8.19e-37 135
Msa0538660 MtrunA17_Chr3g0099131 54.206 107 48 1 10 116 41 146 1.17e-36 137
Msa0538660 MtrunA17_Chr8g0354661 44.966 149 75 4 2 145 25 171 4.46e-35 132
Msa0538660 MtrunA17_Chr5g0410961 43.750 144 77 3 10 151 12 153 9.68e-35 128
Msa0538660 MtrunA17_Chr3g0080861 49.533 107 53 1 10 116 37 142 6.09e-34 129
Msa0538660 MtrunA17_Chr7g0274581 51.852 108 51 1 6 113 8 114 7.27e-34 122
Msa0538660 MtrunA17_Chr1g0193801 47.518 141 68 4 10 147 12 149 1.37e-33 126
Msa0538660 MtrunA17_Chr5g0395281 53.846 104 47 1 10 113 12 114 2.08e-33 124
Msa0538660 MtrunA17_Chr7g0270891 55.140 107 47 1 10 116 12 117 8.52e-33 124
Msa0538660 MtrunA17_Chr2g0323411 47.541 122 60 3 6 124 8 128 8.65e-33 123
Msa0538660 MtrunA17_Chr1g0180391 53.211 109 49 2 8 115 17 124 1.28e-32 120
Msa0538660 MtrunA17_Chr3g0115821 50.962 104 50 1 10 113 12 114 1.60e-32 122
Msa0538660 MtrunA17_Chr6g0453471 50.000 104 51 1 10 113 12 114 3.10e-32 122
Msa0538660 MtrunA17_Chr8g0342541 50.877 114 55 1 10 123 12 124 3.39e-32 122
Msa0538660 MtrunA17_Chr2g0281071 50.000 108 52 2 10 116 13 119 4.57e-32 121
Msa0538660 MtrunA17_Chr4g0060721 49.074 108 54 1 6 113 9 115 5.71e-32 121
Msa0538660 MtrunA17_Chr8g0342521 43.796 137 76 1 10 146 12 147 6.65e-32 121
Msa0538660 MtrunA17_Chr4g0053431 56.863 102 42 2 12 113 5 104 8.42e-32 119
Msa0538660 MtrunA17_Chr4g0039971 50.000 104 51 1 10 113 13 115 8.48e-32 120
Msa0538660 MtrunA17_Chr7g0254411 41.791 134 77 1 6 139 8 140 8.93e-32 120
Msa0538660 MtrunA17_Chr2g0322521 55.455 110 48 1 7 116 26 134 9.16e-32 121
Msa0538660 MtrunA17_Chr7g0217221 49.038 104 52 1 10 113 12 114 1.06e-31 119
Msa0538660 MtrunA17_Chr7g0228231 35.294 170 93 4 10 170 14 175 1.24e-31 117
Msa0538660 MtrunA17_Chr7g0217741 50.000 108 53 1 6 113 8 114 1.25e-31 119
Msa0538660 MtrunA17_Chr7g0261281 46.903 113 58 2 6 117 8 119 1.51e-31 118
Msa0538660 MtrunA17_Chr1g0193371 42.581 155 84 3 10 161 12 164 1.63e-31 120
Msa0538660 MtrunA17_Chr2g0330041 50.000 114 56 1 10 123 12 124 2.42e-31 120
Msa0538660 MtrunA17_Chr1g0194301 47.664 107 55 1 10 116 33 138 2.47e-31 118
Msa0538660 MtrunA17_Chr3g0092401 47.321 112 57 2 6 116 9 119 2.96e-31 118
Msa0538660 MtrunA17_Chr5g0401731 50.394 127 59 3 12 136 15 139 3.64e-31 119
Msa0538660 MtrunA17_Chr2g0309911 51.923 104 49 1 10 113 11 113 3.75e-31 118
Msa0538660 MtrunA17_Chr4g0058631 52.885 104 48 1 10 113 12 114 3.86e-31 119
Msa0538660 MtrunA17_Chr8g0342481 50.862 116 53 3 10 123 12 125 4.26e-31 120
Msa0538660 MtrunA17_Chr5g0397231 51.000 100 48 1 10 109 12 110 4.34e-31 119
Msa0538660 MtrunA17_Chr4g0048511 49.074 108 53 2 10 116 13 119 5.32e-31 119
Msa0538660 MtrunA17_Chr1g0167661 43.077 130 72 2 6 134 8 136 5.40e-31 116
Msa0538660 MtrunA17_Chr4g0042671 43.885 139 72 4 6 141 8 143 5.76e-31 119
Msa0538660 MtrunA17_Chr6g0450101 46.154 104 55 1 10 113 14 116 1.05e-30 114
Msa0538660 MtrunA17_Chr2g0327821 32.751 229 142 4 10 233 6 227 1.12e-30 115
Msa0538660 MtrunA17_Chr1g0186061 43.443 122 64 2 11 132 21 137 1.63e-30 115
Msa0538660 MtrunA17_Chr6g0453211 49.000 100 50 1 10 109 12 110 2.36e-30 116
Msa0538660 MtrunA17_Chr1g0167691 46.296 108 57 1 6 113 8 114 2.66e-30 114
Msa0538660 MtrunA17_Chr5g0440761 33.068 251 154 9 11 256 13 254 2.76e-30 115
Msa0538660 MtrunA17_Chr1g0194291 45.370 108 57 2 3 110 15 120 3.40e-30 114
Msa0538660 MtrunA17_Chr2g0328771 46.957 115 60 1 10 124 20 133 4.29e-30 115
Msa0538660 MtrunA17_Chr5g0440781 40.237 169 94 6 11 178 13 175 4.46e-30 112
Msa0538660 MtrunA17_Chr1g0203411 45.946 111 59 1 6 116 8 117 5.29e-30 115
Msa0538660 MtrunA17_Chr2g0311221 48.571 105 53 1 6 110 10 113 6.46e-30 115
Msa0538660 MtrunA17_Chr8g0387421 46.789 109 57 1 10 118 12 119 6.54e-30 115
Msa0538660 MtrunA17_Chr1g0211161 50.962 104 50 1 10 113 13 115 7.09e-30 113
Msa0538660 MtrunA17_Chr3g0117091 51.923 104 49 1 10 113 12 114 8.15e-30 115
Msa0538660 MtrunA17_Chr5g0441141 40.237 169 94 6 11 178 13 175 8.48e-30 114
Msa0538660 MtrunA17_Chr4g0022931 48.624 109 54 2 10 117 13 120 1.47e-29 113
Msa0538660 MtrunA17_Chr1g0203441 52.427 103 48 1 11 113 14 115 1.70e-29 113
Msa0538660 MtrunA17_Chr8g0385321 45.528 123 64 2 6 128 8 127 1.80e-29 114
Msa0538660 MtrunA17_Chr5g0441131 50.000 108 52 2 10 116 9 115 2.06e-29 110
Msa0538660 MtrunA17_Chr4g0028311 37.629 194 91 7 10 193 12 185 3.82e-29 113
Msa0538660 MtrunA17_Chr1g0187761 47.222 108 56 1 6 113 8 114 3.92e-29 111
Msa0538660 MtrunA17_Chr8g0349261 52.381 105 48 2 10 113 13 116 4.21e-29 112
Msa0538660 MtrunA17_Chr1g0209661 41.441 111 64 1 6 116 23 132 4.37e-29 112
Msa0538660 MtrunA17_Chr5g0435101 44.355 124 65 2 10 133 11 130 4.53e-29 110
Msa0538660 MtrunA17_Chr1g0168661 41.538 130 69 2 11 140 22 144 4.63e-29 111
Msa0538660 MtrunA17_Chr4g0022881 44.643 112 61 1 5 116 7 117 5.22e-29 110
Msa0538660 MtrunA17_Chr4g0032401 45.833 120 64 1 10 129 17 135 6.64e-29 112
Msa0538660 MtrunA17_Chr7g0271241 53.535 99 45 1 10 108 12 109 7.28e-29 113
Msa0538660 MtrunA17_Chr4g0037141 37.805 164 94 4 6 162 8 170 7.76e-29 111
Msa0538660 MtrunA17_Chr4g0022891 45.455 121 63 2 5 123 7 126 9.11e-29 110
Msa0538660 MtrunA17_Chr3g0103281 48.148 108 55 1 6 113 8 114 1.14e-28 112
Msa0538660 MtrunA17_Chr7g0264641 47.706 109 55 2 6 113 8 115 1.24e-28 110
Msa0538660 MtrunA17_Chr5g0417821 45.833 120 61 3 10 126 7 125 1.41e-28 110
Msa0538660 MtrunA17_Chr4g0022901 43.846 130 67 3 10 138 13 137 1.61e-28 110
Msa0538660 MtrunA17_Chr2g0327351 49.524 105 51 2 6 109 8 111 1.78e-28 111
Msa0538660 MtrunA17_Chr4g0044421 50.000 104 50 2 12 114 14 116 2.22e-28 108
Msa0538660 MtrunA17_Chr8g0346561 46.789 109 56 2 10 117 12 119 3.18e-28 110
Msa0538660 MtrunA17_Chr3g0099141 52.326 86 40 1 10 95 40 124 3.70e-28 105
Msa0538660 MtrunA17_Chr5g0434571 44.186 129 65 2 10 138 48 169 4.41e-28 111
Msa0538660 MtrunA17_Chr4g0008551 50.000 102 49 2 12 113 38 137 8.39e-28 110
Msa0538660 MtrunA17_Chr2g0323351 38.667 150 90 2 10 158 12 160 8.78e-28 108
Msa0538660 MtrunA17_Chr3g0088461 50.000 104 51 1 10 113 22 124 1.23e-27 109
Msa0538660 MtrunA17_Chr3g0131121 43.089 123 67 2 6 128 8 127 1.29e-27 108
Msa0538660 MtrunA17_Chr3g0110351 49.038 104 52 1 10 113 12 114 1.38e-27 108
Msa0538660 MtrunA17_Chr1g0192411 47.748 111 56 2 10 119 12 121 1.90e-27 110
Msa0538660 MtrunA17_Chr4g0022911 42.222 135 71 3 10 138 13 146 2.63e-27 107
Msa0538660 MtrunA17_Chr1g0151941 41.667 132 64 3 10 129 12 142 2.68e-27 106
Msa0538660 MtrunA17_Chr4g0030881 47.107 121 54 4 11 122 8 127 3.04e-27 106
Msa0538660 MtrunA17_Chr6g0470971 50.476 105 51 1 11 115 15 118 3.20e-27 107
Msa0538660 MtrunA17_Chr1g0152011 47.706 109 55 2 6 113 8 115 4.39e-27 108
Msa0538660 MtrunA17_Chr3g0133601 50.980 102 48 2 12 113 37 136 6.80e-27 105
Msa0538660 MtrunA17_Chr6g0452271 44.000 125 66 3 6 127 8 131 9.77e-27 107
Msa0538660 MtrunA17_Chr6g0454921 55.208 96 41 2 12 107 15 108 1.18e-26 103
Msa0538660 MtrunA17_Chr4g0055981 40.000 120 71 1 10 129 55 173 1.76e-26 103
Msa0538660 MtrunA17_Chr4g0068061 43.269 104 58 1 10 113 12 114 1.92e-26 106
Msa0538660 MtrunA17_Chr4g0054391 38.509 161 84 5 6 165 8 154 2.30e-26 105
Msa0538660 MtrunA17_Chr1g0194951 46.154 104 55 1 10 113 12 114 2.38e-26 106
Msa0538660 MtrunA17_Chr4g0057031 47.115 104 54 1 10 113 12 114 2.48e-26 104
Msa0538660 MtrunA17_Chr5g0400821 46.789 109 56 2 6 113 8 115 3.15e-26 105
Msa0538660 MtrunA17_Chr7g0275911 41.667 108 62 1 10 117 12 118 6.47e-26 103
Msa0538660 MtrunA17_Chr3g0135311 44.954 109 58 2 6 113 8 115 9.94e-26 104
Msa0538660 MtrunA17_Chr3g0121241 42.373 118 64 2 10 124 42 158 1.49e-25 103
Msa0538660 MtrunA17_Chr7g0228891 45.192 104 56 1 10 113 12 114 2.32e-25 102
Msa0538660 MtrunA17_Chr4g0068921 42.991 107 60 1 10 116 24 129 7.96e-25 98.6
Msa0538660 MtrunA17_Chr6g0487491 42.735 117 57 3 6 113 8 123 1.22e-24 99.8
Msa0538660 MtrunA17_Chr8g0343831 45.000 100 54 1 10 109 8 106 1.95e-24 99.4
Msa0538660 MtrunA17_Chr4g0070611 36.220 127 76 2 10 132 12 137 2.33e-24 100
Msa0538660 MtrunA17_Chr4g0072751 45.714 105 55 2 6 109 8 111 3.08e-24 100
Msa0538660 MtrunA17_Chr4g0070641 42.000 100 57 1 10 109 12 110 3.19e-24 96.3
Msa0538660 MtrunA17_Chr1g0157731 45.872 109 57 2 10 118 89 195 4.13e-24 102
Msa0538660 MtrunA17_Chr2g0293911 42.991 107 60 1 10 116 24 129 4.85e-24 99.8
Msa0538660 MtrunA17_Chr3g0139671 45.794 107 56 2 12 118 85 189 8.80e-24 101
Msa0538660 MtrunA17_Chr8g0360111 45.098 102 55 1 8 109 23 123 1.06e-23 97.4
Msa0538660 MtrunA17_Chr5g0429661 45.098 102 54 2 12 113 122 221 1.84e-23 98.6
Msa0538660 MtrunA17_Chr7g0269831 48.148 108 55 1 6 113 8 114 2.51e-23 98.2
Msa0538660 MtrunA17_Chr4g0058991 44.444 108 58 2 6 113 203 308 4.11e-23 98.6
Msa0538660 MtrunA17_Chr7g0238631 48.077 104 52 2 10 113 111 212 6.25e-23 98.6
Msa0538660 MtrunA17_Chr5g0437321 48.077 104 52 2 6 109 13 114 7.43e-23 95.5
Msa0538660 MtrunA17_Chr4g0042611 48.780 82 41 1 6 87 8 88 1.54e-22 89.4
Msa0538660 MtrunA17_Chr7g0240821 35.333 150 77 2 14 144 5 153 2.67e-22 92.8
Msa0538660 MtrunA17_Chr5g0434931 42.609 115 63 3 1 114 27 139 3.45e-22 93.6
Msa0538660 MtrunA17_Chr7g0228531 44.231 104 55 2 10 113 218 318 6.58e-22 95.1
Msa0538660 MtrunA17_Chr7g0247131 40.000 130 71 4 42 166 11 138 7.12e-22 92.4
Msa0538660 MtrunA17_Chr3g0117511 44.118 102 55 2 12 113 183 282 1.64e-21 94.0
Msa0538660 MtrunA17_Chr5g0434911 42.609 115 63 3 1 114 13 125 1.77e-21 91.7
Msa0538660 MtrunA17_Chr7g0220341 44.660 103 54 2 10 110 25 126 1.83e-21 91.7
Msa0538660 MtrunA17_Chr6g0480581 44.762 105 56 2 12 116 4 106 2.76e-21 90.5
Msa0538660 MtrunA17_Chr7g0228991 43.000 100 56 1 10 109 29 127 2.88e-21 90.9
Msa0538660 MtrunA17_Chr5g0395221 53.846 78 35 1 10 87 12 88 3.30e-21 85.9
Msa0538660 MtrunA17_Chr5g0434831 43.396 106 58 2 4 109 2 105 1.23e-20 87.4
Msa0538660 MtrunA17_Chr7g0228481 38.393 112 66 2 1 112 209 317 5.34e-20 89.4
Msa0538660 MtrunA17_Chr5g0417621 41.085 129 60 4 12 126 134 260 7.24e-20 89.0
Msa0538660 MtrunA17_Chr5g0434841 40.678 118 66 3 1 116 12 127 1.05e-19 87.4
Msa0538660 MtrunA17_Chr4g0042501 45.370 108 54 3 3 107 93 198 1.91e-19 87.8
Msa0538660 MtrunA17_Chr8g0342511 50.649 77 37 1 10 86 12 87 3.17e-19 80.9
Msa0538660 MtrunA17_Chr8g0342531 49.367 79 39 1 10 88 12 89 3.17e-19 82.8
Msa0538660 MtrunA17_Chr7g0228401 32.222 180 110 6 23 201 290 458 7.50e-19 86.3
Msa0538660 MtrunA17_Chr8g0342461 50.000 80 38 2 10 88 12 90 8.52e-19 80.9
Msa0538660 MtrunA17_Chr7g0238651 41.346 104 58 2 15 116 10 112 3.15e-18 84.0
Msa0538660 MtrunA17_Chr8g0342471 48.750 80 39 2 10 88 12 90 3.31e-18 79.3
Msa0538660 MtrunA17_Chr5g0397841 30.400 250 129 9 10 216 108 355 4.83e-18 84.0
Msa0538660 MtrunA17_Chr5g0425591 48.193 83 41 2 11 92 10 91 6.05e-18 77.4
Msa0538660 MtrunA17_Chr6g0460671 40.000 105 61 2 12 116 99 201 7.41e-18 82.8
Msa0538660 MtrunA17_Chr2g0323321 41.860 86 49 1 10 95 11 95 1.08e-17 77.4
Msa0538660 MtrunA17_Chr6g0460661 39.048 105 62 2 12 116 16 118 1.08e-17 78.6
Msa0538660 MtrunA17_Chr6g0453751 46.739 92 39 3 10 92 20 110 1.41e-17 77.4
Msa0538660 MtrunA17_Chr3g0125801 40.945 127 73 2 12 138 16 140 1.49e-17 80.9
Msa0538660 MtrunA17_Chr7g0254261 44.643 112 57 3 8 116 82 191 3.53e-17 80.9
Msa0538660 MtrunA17_Chr7g0233061 32.667 150 85 5 12 157 180 317 3.54e-17 80.9
Msa0538660 MtrunA17_Chr1g0177901 28.571 217 142 8 22 234 4 211 1.16e-16 77.0
Msa0538660 MtrunA17_Chr8g0362231 37.864 103 62 2 15 117 25 125 2.99e-16 78.6
Msa0538660 MtrunA17_Chr5g0416341 39.394 99 58 2 15 113 29 125 3.05e-15 75.5
Msa0538660 MtrunA17_Chr2g0294811 40.244 82 48 1 6 87 8 88 1.03e-14 69.3
Msa0538660 MtrunA17_Chr5g0434901 46.667 75 35 2 35 109 2 71 1.01e-13 66.6
Msa0538660 MtrunA17_Chr3g0093811 45.714 70 37 1 44 113 16 84 1.53e-13 69.3
Msa0538660 MtrunA17_Chr7g0229131 44.286 70 38 1 44 113 6 74 2.23e-13 67.0
Msa0538660 MtrunA17_Chr7g0229101 46.377 69 36 1 44 112 6 73 9.66e-13 66.2
Msa0538660 MtrunA17_Chr3g0104501 50.000 66 32 1 12 77 133 197 2.94e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538660 AT3G60460.1 40.385 312 139 6 4 292 5 292 1.38e-61 197
Msa0538660 AT4G26930.1 51.613 124 57 3 10 132 19 140 4.95e-37 136
Msa0538660 AT5G06100.1 54.206 107 48 1 10 116 32 137 5.16e-37 137
Msa0538660 AT5G06100.5 54.206 107 48 1 10 116 32 137 1.59e-36 137
Msa0538660 AT5G06100.2 54.206 107 48 1 10 116 32 137 1.59e-36 137
Msa0538660 AT5G06100.3 54.206 107 48 1 10 116 32 137 1.59e-36 137
Msa0538660 AT5G06100.4 54.206 107 48 1 10 116 32 137 1.59e-36 137
Msa0538660 AT3G11440.2 51.351 111 53 1 6 116 37 146 2.89e-36 135
Msa0538660 AT3G11440.3 51.351 111 53 1 6 116 37 146 1.21e-35 135
Msa0538660 AT3G11440.4 51.351 111 53 1 6 116 37 146 1.21e-35 135
Msa0538660 AT3G11440.1 51.351 111 53 1 6 116 37 146 1.21e-35 135
Msa0538660 AT5G55020.1 52.336 107 50 1 10 116 26 131 9.24e-35 132
Msa0538660 AT2G32460.1 44.203 138 70 4 7 143 16 147 2.25e-34 130
Msa0538660 AT2G32460.2 44.203 138 70 4 7 143 4 135 2.26e-34 130
Msa0538660 AT2G26960.1 53.333 105 48 1 12 116 22 125 1.27e-33 127
Msa0538660 AT3G27810.1 37.500 168 99 3 10 174 20 184 1.28e-32 120
Msa0538660 AT1G34670.1 50.962 104 50 1 10 113 12 114 1.70e-32 123
Msa0538660 AT3G13890.2 54.808 104 46 1 10 113 12 114 1.81e-32 123
Msa0538660 AT4G28110.1 47.541 122 60 3 6 124 8 128 2.60e-32 121
Msa0538660 AT4G21440.1 50.000 112 54 2 6 116 8 118 2.78e-32 122
Msa0538660 AT4G01680.3 53.271 107 49 1 10 116 12 117 3.84e-32 119
Msa0538660 AT5G65230.1 50.962 104 50 1 10 113 12 114 7.35e-32 120
Msa0538660 AT4G01680.1 53.271 107 49 1 10 116 12 117 1.04e-31 120
Msa0538660 AT5G15310.4 50.000 104 51 1 10 113 12 114 1.09e-31 118
Msa0538660 AT5G26660.1 53.271 107 49 1 10 116 12 117 1.14e-31 120
Msa0538660 AT3G01530.1 42.063 126 69 2 6 131 21 142 1.73e-31 117
Msa0538660 AT3G30210.1 36.207 174 89 4 11 167 28 196 1.83e-31 119
Msa0538660 AT1G57560.2 44.776 134 70 3 10 140 12 144 2.46e-31 118
Msa0538660 AT3G12720.1 47.967 123 63 1 10 132 22 143 2.88e-31 119
Msa0538660 AT5G15310.1 50.000 104 51 1 10 113 12 114 3.60e-31 119
Msa0538660 AT5G54230.1 50.000 104 51 1 10 113 12 114 3.72e-31 119
Msa0538660 AT5G15310.2 50.000 104 51 1 10 113 12 114 4.07e-31 119
Msa0538660 AT3G28910.1 46.296 108 57 1 6 113 8 114 4.60e-31 119
Msa0538660 AT1G63910.1 50.467 107 52 1 10 116 12 117 4.98e-31 119
Msa0538660 AT1G74650.1 48.148 108 55 1 6 113 8 114 5.03e-31 119
Msa0538660 AT3G61250.1 48.305 118 57 2 10 124 12 128 5.35e-31 118
Msa0538660 AT1G08810.1 50.962 104 50 1 10 113 12 114 6.52e-31 117
Msa0538660 AT3G02940.2 49.057 106 52 2 10 114 12 116 6.60e-31 118
Msa0538660 AT1G57560.1 46.212 132 67 3 10 138 12 142 6.85e-31 118
Msa0538660 AT5G59780.3 48.696 115 56 2 11 123 9 122 7.73e-31 115
Msa0538660 AT3G50060.1 57.843 102 41 2 12 113 6 105 8.63e-31 117
Msa0538660 AT3G02940.1 49.057 106 52 2 10 114 12 116 8.96e-31 118
Msa0538660 AT3G02940.3 49.057 106 52 2 10 114 12 116 8.96e-31 118
Msa0538660 AT3G01140.2 47.222 108 56 1 6 113 8 114 9.95e-31 118
Msa0538660 AT4G05100.1 50.000 106 51 2 10 114 13 117 1.05e-30 117
Msa0538660 AT3G46130.1 49.565 115 55 2 11 123 10 123 1.19e-30 116
Msa0538660 AT1G79180.1 47.458 118 60 2 10 126 14 130 1.29e-30 117
Msa0538660 AT3G47600.1 48.077 104 53 1 10 113 12 114 1.29e-30 117
Msa0538660 AT5G62470.2 47.222 108 56 1 6 113 8 114 1.41e-30 118
Msa0538660 AT1G09540.1 52.885 104 48 1 10 113 12 114 1.85e-30 118
Msa0538660 AT3G01140.1 47.222 108 56 1 6 113 51 157 1.95e-30 118
Msa0538660 AT1G16490.1 50.962 104 50 1 10 113 14 116 2.47e-30 115
Msa0538660 AT5G16770.4 49.057 106 52 2 10 114 12 116 2.92e-30 116
Msa0538660 AT5G16770.3 49.057 106 52 2 10 114 12 116 2.92e-30 116
Msa0538660 AT4G09460.1 42.754 138 74 4 6 142 8 141 2.98e-30 114
Msa0538660 AT1G48000.1 38.411 151 90 2 10 160 32 179 3.47e-30 114
Msa0538660 AT3G13890.1 50.442 113 46 2 10 113 12 123 4.31e-30 117
Msa0538660 AT5G16770.1 49.057 106 52 2 10 114 12 116 4.38e-30 116
Msa0538660 AT5G16770.2 49.057 106 52 2 10 114 12 116 4.38e-30 116
Msa0538660 AT2G47190.1 45.370 108 58 1 10 117 20 126 4.48e-30 115
Msa0538660 AT5G40350.1 45.192 104 56 1 10 113 17 119 4.53e-30 113
Msa0538660 AT1G56160.1 35.838 173 106 3 6 174 10 181 1.29e-29 114
Msa0538660 AT2G31180.1 44.248 113 61 2 6 117 8 119 1.82e-29 112
Msa0538660 AT4G34990.1 36.686 169 91 2 6 159 8 175 1.87e-29 113
Msa0538660 AT5G10280.1 49.038 104 52 1 10 113 12 114 2.01e-29 114
Msa0538660 AT3G24310.1 42.748 131 67 3 6 136 15 137 2.23e-29 113
Msa0538660 AT3G55730.1 56.863 102 42 2 12 113 56 155 2.27e-29 115
Msa0538660 AT5G67300.1 55.140 107 46 2 12 118 6 110 2.43e-29 114
Msa0538660 AT5G62470.1 47.222 108 55 2 6 113 8 113 3.38e-29 114
Msa0538660 AT1G22640.1 33.898 236 126 7 6 224 8 230 3.60e-29 112
Msa0538660 AT1G35515.1 48.624 109 53 3 6 113 8 114 3.69e-29 110
Msa0538660 AT5G61420.2 34.010 197 104 5 10 201 12 187 3.83e-29 114
Msa0538660 AT3G48920.1 52.427 103 48 1 11 113 19 120 4.18e-29 112
Msa0538660 AT3G23250.1 41.221 131 75 2 6 135 8 137 4.87e-29 112
Msa0538660 AT4G38620.1 36.111 180 100 5 6 175 8 182 7.01e-29 112
Msa0538660 AT1G18570.1 44.203 138 69 4 10 147 13 142 7.88e-29 113
Msa0538660 AT5G07690.1 46.667 105 55 1 10 114 12 115 9.32e-29 112
Msa0538660 AT5G60890.1 50.000 104 51 1 10 113 12 114 1.02e-28 112
Msa0538660 AT3G53200.1 48.673 113 55 2 10 120 9 120 1.26e-28 110
Msa0538660 AT4G37780.1 42.963 135 62 3 10 143 12 132 1.56e-28 111
Msa0538660 AT4G01680.2 48.739 119 48 3 10 116 12 129 1.78e-28 112
Msa0538660 AT2G16720.1 37.736 159 86 6 6 163 8 154 1.79e-28 110
Msa0538660 AT5G23000.1 50.467 107 50 3 10 114 12 117 2.17e-28 111
Msa0538660 AT5G57620.1 48.624 109 54 2 6 113 8 115 2.26e-28 111
Msa0538660 AT4G13480.1 47.573 103 53 1 11 113 7 108 2.39e-28 110
Msa0538660 AT4G37260.1 53.922 102 45 2 12 113 13 112 3.78e-28 110
Msa0538660 AT2G47460.1 44.915 118 64 1 6 123 8 124 4.13e-28 111
Msa0538660 AT4G17785.2 48.077 104 53 1 10 113 13 115 4.15e-28 111
Msa0538660 AT4G17785.1 48.077 104 53 1 10 113 13 115 4.58e-28 111
Msa0538660 AT5G07700.1 48.077 104 53 1 10 113 12 114 5.02e-28 110
Msa0538660 AT5G07700.2 48.077 104 53 1 10 113 12 114 5.02e-28 110
Msa0538660 AT1G18710.1 44.262 122 64 3 10 128 12 132 7.58e-28 108
Msa0538660 AT3G12820.1 48.148 108 55 1 6 113 10 116 8.73e-28 108
Msa0538660 AT1G66230.1 45.968 124 63 2 10 130 12 134 9.87e-28 108
Msa0538660 AT2G23290.1 53.922 102 45 2 12 113 13 112 1.01e-27 109
Msa0538660 AT1G06180.1 45.370 108 58 1 6 113 8 114 1.09e-27 108
Msa0538660 AT5G49330.1 47.115 104 54 1 10 113 12 114 1.79e-27 109
Msa0538660 AT5G56110.1 46.296 108 57 1 6 113 8 114 2.28e-27 108
Msa0538660 AT1G68320.1 42.056 107 61 1 10 116 19 124 2.65e-27 107
Msa0538660 AT1G25340.1 43.396 106 59 1 11 116 19 123 3.41e-27 107
Msa0538660 AT5G16600.1 46.341 123 62 2 10 129 12 133 3.64e-27 108
Msa0538660 AT2G36890.1 44.037 109 59 2 6 113 8 115 5.40e-27 107
Msa0538660 AT5G14340.1 42.982 114 64 1 10 123 24 136 5.77e-27 106
Msa0538660 AT3G08500.1 50.000 104 51 1 10 113 30 132 6.32e-27 108
Msa0538660 AT5G12870.1 48.148 108 54 2 10 116 18 124 6.99e-27 106
Msa0538660 AT3G13540.1 42.063 126 69 3 10 132 23 147 8.83e-27 105
Msa0538660 AT4G22680.1 49.038 104 52 1 10 113 12 114 9.14e-27 105
Msa0538660 AT2G36890.2 44.037 109 59 2 6 113 49 156 1.07e-26 107
Msa0538660 AT4G25560.1 48.544 103 52 1 11 113 11 112 1.49e-26 105
Msa0538660 AT3G28470.1 49.038 104 52 1 6 109 8 110 1.57e-26 106
Msa0538660 AT5G52600.1 45.370 108 58 1 2 109 4 110 1.60e-26 103
Msa0538660 AT3G49690.1 46.552 116 60 2 6 120 8 122 1.80e-26 106
Msa0538660 AT4G18770.1 40.940 149 84 4 3 149 208 354 2.10e-26 107
Msa0538660 AT1G74430.1 43.333 120 64 3 10 126 12 130 2.41e-26 105
Msa0538660 AT5G14750.1 48.000 100 51 1 11 110 17 115 3.36e-26 102
Msa0538660 AT4G12350.1 45.902 122 60 3 10 127 12 131 4.17e-26 104
Msa0538660 AT2G26950.1 45.192 104 56 1 12 115 18 120 4.91e-26 106
Msa0538660 AT3G62610.1 43.220 118 66 1 6 123 8 124 5.41e-26 105
Msa0538660 AT5G40330.1 44.545 110 60 1 1 110 3 111 6.91e-26 102
Msa0538660 AT5G35550.1 42.063 126 67 3 7 131 11 131 8.93e-26 103
Msa0538660 AT5G65790.1 45.690 116 61 2 6 120 8 122 1.13e-25 105
Msa0538660 AT2G39880.1 51.961 102 47 2 12 113 50 149 1.19e-25 105
Msa0538660 AT1G79180.2 37.179 156 61 4 6 126 10 163 1.27e-25 104
Msa0538660 AT1G74080.1 46.154 104 55 1 10 113 12 114 1.38e-25 104
Msa0538660 AT3G27920.1 47.000 100 52 1 11 110 15 113 5.80e-25 100
Msa0538660 AT5G11050.1 43.697 119 63 3 10 126 103 219 7.06e-25 103
Msa0538660 AT1G25340.2 42.453 106 55 2 11 116 19 118 1.31e-24 100
Msa0538660 AT5G52260.1 47.368 114 58 2 11 123 13 125 1.39e-24 100
Msa0538660 AT3G09230.1 50.000 102 49 2 12 113 55 154 2.13e-24 102
Msa0538660 AT1G25340.3 42.453 106 55 2 11 116 19 118 2.84e-24 100
Msa0538660 AT5G62320.1 45.946 111 52 2 10 113 13 122 3.93e-24 98.6
Msa0538660 AT3G06490.1 45.794 107 57 1 10 116 19 124 1.04e-23 99.0
Msa0538660 AT5G49620.1 46.154 104 55 1 10 113 26 128 1.12e-23 98.6
Msa0538660 AT5G58850.1 45.946 111 56 3 12 120 105 213 2.09e-23 99.8
Msa0538660 AT5G02320.1 45.378 119 60 3 12 127 127 243 4.91e-23 99.4
Msa0538660 AT5G02320.2 45.378 119 60 3 12 127 127 243 4.91e-23 99.4
Msa0538660 AT5G02320.3 45.378 119 60 3 12 127 67 183 5.09e-23 99.0
Msa0538660 AT3G27810.2 38.806 134 76 3 44 174 5 135 7.55e-23 93.2
Msa0538660 AT5G40360.1 42.727 110 61 2 6 115 152 259 8.50e-23 97.1
Msa0538660 AT4G32730.5 44.545 110 58 3 10 118 85 192 2.64e-22 97.4
Msa0538660 AT4G32730.4 44.545 110 58 3 10 118 85 192 2.64e-22 97.4
Msa0538660 AT4G32730.3 44.545 110 58 3 10 118 85 192 2.64e-22 97.4
Msa0538660 AT4G32730.2 44.545 110 58 3 10 118 85 192 2.64e-22 97.4
Msa0538660 AT4G32730.1 44.545 110 58 3 10 118 85 192 2.81e-22 97.4
Msa0538660 AT3G46130.3 52.874 87 38 2 39 123 6 91 3.09e-22 92.8
Msa0538660 AT5G26660.2 58.904 73 29 1 44 116 15 86 3.61e-22 94.7
Msa0538660 AT1G66370.1 40.769 130 67 3 10 130 8 136 4.00e-22 93.2
Msa0538660 AT5G59780.2 54.878 82 34 2 44 123 21 101 4.36e-22 92.4
Msa0538660 AT3G09370.2 45.794 107 56 2 12 118 135 239 5.66e-22 95.9
Msa0538660 AT3G09370.1 45.794 107 56 2 12 118 130 234 5.83e-22 95.9
Msa0538660 AT3G46130.4 54.878 82 34 2 44 123 21 101 6.46e-22 92.4
Msa0538660 AT3G09370.3 45.794 107 56 2 12 118 143 247 7.50e-22 95.5
Msa0538660 AT5G11510.3 41.284 109 62 2 10 118 79 185 9.76e-22 95.9
Msa0538660 AT5G11510.1 41.284 109 62 2 10 118 79 185 9.76e-22 95.9
Msa0538660 AT5G11510.4 41.284 109 62 2 10 118 79 185 9.76e-22 95.9
Msa0538660 AT5G11510.2 41.284 109 62 2 10 118 79 185 1.13e-21 95.5
Msa0538660 AT5G11510.5 41.284 109 62 2 10 118 79 185 1.14e-21 95.5
Msa0538660 AT1G66380.1 45.000 100 54 1 10 109 8 106 1.60e-21 88.6
Msa0538660 AT3G27785.1 41.667 108 61 2 6 113 183 288 1.65e-21 94.4
Msa0538660 AT3G29020.1 46.875 96 49 2 12 107 65 158 2.08e-21 90.9
Msa0538660 AT3G29020.2 44.762 105 56 2 12 116 67 169 2.97e-21 92.0
Msa0538660 AT1G56650.1 45.000 100 54 1 10 109 8 106 5.32e-21 90.1
Msa0538660 AT5G49620.2 40.678 118 55 2 10 113 26 142 3.09e-20 89.4
Msa0538660 AT5G40350.2 51.429 70 33 1 44 113 6 74 3.20e-20 85.9
Msa0538660 AT1G69560.1 44.554 101 54 2 7 107 102 200 8.23e-20 88.2
Msa0538660 AT3G53200.2 53.165 79 34 2 44 120 10 87 8.91e-20 85.9
Msa0538660 AT1G69560.2 44.554 101 54 2 7 107 118 216 9.60e-20 88.2
Msa0538660 AT1G26780.2 39.683 126 61 3 10 122 96 219 1.78e-19 87.8
Msa0538660 AT1G26780.1 39.683 126 61 3 10 122 96 219 1.79e-19 86.7
Msa0538660 AT4G33450.1 41.935 124 65 4 11 131 18 137 1.94e-19 85.9
Msa0538660 AT5G17800.1 35.976 164 90 4 12 162 93 254 1.96e-19 87.0
Msa0538660 AT1G66390.1 42.574 101 57 1 10 110 8 107 2.26e-19 85.9
Msa0538660 AT3G12820.2 55.882 68 29 1 46 113 2 68 2.52e-19 84.3
Msa0538660 AT3G47600.2 43.299 97 53 2 44 139 40 135 4.10e-19 86.3
Msa0538660 AT2G25230.1 38.793 116 67 4 10 124 24 136 4.44e-19 84.7
Msa0538660 AT1G17950.1 43.810 105 54 3 12 113 5 107 6.02e-19 84.3
Msa0538660 AT5G35550.2 49.438 89 39 3 44 131 51 134 5.50e-18 82.0
Msa0538660 AT4G00540.2 45.045 111 55 4 10 116 101 209 9.13e-18 83.2
Msa0538660 AT4G00540.1 45.045 111 55 4 10 116 99 207 1.56e-17 82.8
Msa0538660 AT2G37630.1 41.346 104 58 2 15 116 7 109 4.10e-17 80.9
Msa0538660 AT1G73410.1 44.762 105 53 3 12 113 6 108 5.04e-17 79.0
Msa0538660 AT1G73410.2 44.762 105 53 3 12 113 6 108 5.77e-17 78.2
Msa0538660 AT5G39700.1 38.793 116 69 2 1 116 45 158 5.79e-17 77.8
Msa0538660 AT5G14750.3 52.308 65 30 1 46 110 18 81 2.68e-16 75.5
Msa0538660 AT5G40430.1 37.500 112 67 3 10 121 52 160 6.72e-16 76.3
Msa0538660 AT2G02820.2 37.864 103 62 2 15 117 33 133 2.86e-14 73.2
Msa0538660 AT2G02820.1 37.864 103 62 2 15 117 33 133 3.36e-14 72.8
Msa0538660 AT1G14350.2 36.449 107 66 2 15 121 28 132 3.37e-14 72.8
Msa0538660 AT1G14350.1 36.449 107 66 2 15 121 28 132 3.37e-14 72.8
Msa0538660 AT2G02820.3 34.921 126 66 3 15 140 33 142 3.74e-14 72.0
Msa0538660 AT1G66380.3 51.515 66 31 1 44 109 9 73 6.87e-13 64.3
Msa0538660 AT1G66380.2 36.735 98 60 2 10 106 8 104 1.73e-12 63.2
Msa0538660 AT3G23250.2 40.741 81 46 2 56 135 1 80 6.21e-12 64.3
Msa0538660 AT1G22640.3 34.483 145 77 5 56 184 1 143 2.03e-11 62.4
Msa0538660 AT3G18100.1 38.144 97 58 2 11 107 545 639 4.09e-11 63.9
Msa0538660 AT3G18100.4 38.144 97 58 2 11 107 384 478 4.23e-11 63.9
Msa0538660 AT3G18100.2 38.144 97 58 2 11 107 332 426 4.49e-11 63.9
Msa0538660 AT3G18100.3 38.144 97 58 2 11 107 497 591 4.96e-11 63.9
Msa0538660 AT5G59780.1 48.148 54 26 1 72 123 4 57 6.39e-11 60.5

Find 69 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAATATGTAGCAATTT+TGG 0.130777 4_1:-18144021 None:intergenic
CTCAAACATGTCCATAAAAT+TGG 0.140060 4_1:-18144818 None:intergenic
GGCCAAAATTGCTACATATT+TGG 0.140847 4_1:+18144019 Msa0538660:CDS
ATTGAACTACAGGGGCAATT+TGG 0.218760 4_1:+18143987 Msa0538660:CDS
TAAGTTCACTTTCCAAATTT+TGG 0.233054 4_1:-18144645 None:intergenic
TTGTGTTTCTGCTGCTTTGA+TGG 0.256433 4_1:-18144128 None:intergenic
AAAGCCAAACTACCAAAATT+TGG 0.257129 4_1:+18144633 Msa0538660:CDS
AAGTTCAAACTGCTTCTTTC+AGG 0.270783 4_1:+18144927 Msa0538660:CDS
GGAAAGTCCATCTGTGATTC+AGG 0.284117 4_1:-18144751 None:intergenic
TTTGGAGTAGCAGGAGAAAA+AGG 0.292990 4_1:+18144072 Msa0538660:CDS
ATAATGATGTGAAGAACTTT+TGG 0.312299 4_1:+18144054 Msa0538660:CDS
AATTTGGAAAGTGAACTTAA+TGG 0.324796 4_1:+18144649 Msa0538660:CDS
TAGTTTGGCTTTGTCAAATC+TGG 0.330481 4_1:-18144622 None:intergenic
TTGAAACATGTTAACAAATA+TGG 0.334464 4_1:+18143036 Msa0538660:CDS
AGCTGATTGGAACCACTTTC+AGG 0.336419 4_1:-18144532 None:intergenic
TCAAACATGTCCATAAAATT+GGG 0.364368 4_1:-18144817 None:intergenic
GAAAATCTTGTCGGTTAAGA+TGG 0.365516 4_1:+18143109 Msa0538660:CDS
TTGAACTACAGGGGCAATTT+GGG 0.372711 4_1:+18143988 Msa0538660:CDS
AGTTCTTGGCAAAAGACCTT+TGG 0.382985 4_1:-18143085 None:intergenic
AGGGGCAATTTGGGAACAAA+TGG 0.384910 4_1:+18143997 Msa0538660:CDS
TGCTGCTTTGATGGTGGTGA+TGG 0.407537 4_1:-18144119 None:intergenic
TTGCCAACTCTTGGACTTGA+AGG 0.413076 4_1:+18144889 Msa0538660:CDS
ACAAATATGGTCCTAGAGAT+TGG 0.416347 4_1:+18143049 Msa0538660:CDS
AAGGGTGGTGATTGAACTAC+AGG 0.423925 4_1:+18143977 Msa0538660:CDS
GGAACTAAGTTGCCAACTCT+TGG 0.426329 4_1:+18144880 Msa0538660:CDS
TACTTACCCAACTTCTTACA+TGG 0.428645 4_1:+18144567 Msa0538660:CDS
TAATGGAATTATTGAGTTTG+AGG 0.433166 4_1:+18144666 Msa0538660:CDS
GTCCATAAAATTGGGGTCAA+AGG 0.440887 4_1:-18144809 None:intergenic
TTGTTTCCCATGTAAGAAGT+TGG 0.450063 4_1:-18144574 None:intergenic
TGAACAAGATCTTGGCACTC+TGG 0.451297 4_1:-18144781 None:intergenic
TGTTTCCCATGTAAGAAGTT+GGG 0.451482 4_1:-18144573 None:intergenic
TCTTGGCACTCTGGGAATAG+TGG 0.453927 4_1:-18144772 None:intergenic
TAATCAAGTAAAAGTTGAAA+AGG 0.453950 4_1:+18144166 Msa0538660:CDS
TCCATAAAATTGGGGTCAAA+GGG 0.456231 4_1:-18144808 None:intergenic
GATGGTGGTGATGGTGTCCT+TGG 0.466017 4_1:-18144110 None:intergenic
CTATTTCAGGTTCCTGAAAG+TGG 0.477854 4_1:+18144520 Msa0538660:intron
AGGGATCTTGAACAAGATCT+TGG 0.482835 4_1:-18144789 None:intergenic
TGAAAGTGGTTCCAATCAGC+TGG 0.487595 4_1:+18144534 Msa0538660:CDS
CAAGAACTGGAAAATCTTGT+CGG 0.492831 4_1:+18143100 Msa0538660:CDS
AGTGTGTGGAGCAAGAAGAT+TGG 0.494056 4_1:+18144859 Msa0538660:CDS
CAAAAGACCTTTGGATCGAA+TGG 0.500376 4_1:-18143076 None:intergenic
TTCATTAGAGGAAGAAAGGG+TGG 0.503576 4_1:+18143962 Msa0538660:CDS
ATCTGTGATTCAGGGAGTAA+TGG 0.504206 4_1:-18144742 None:intergenic
CGAATGGAGCTCCAATCTCT+AGG 0.517393 4_1:-18143060 None:intergenic
ATCAAAGCAGCAGAAACACA+AGG 0.531957 4_1:+18144130 Msa0538660:CDS
GAACAAGATCTTGGCACTCT+GGG 0.532503 4_1:-18144780 None:intergenic
AAAATCTTGTCGGTTAAGAT+GGG 0.534752 4_1:+18143110 Msa0538660:CDS
GGGGCAATTTGGGAACAAAT+GGG 0.537798 4_1:+18143998 Msa0538660:CDS
TTTCCTTCAAGTCCAAGAGT+TGG 0.543581 4_1:-18144892 None:intergenic
TGTTTCTGCTGCTTTGATGG+TGG 0.546809 4_1:-18144125 None:intergenic
AAAATTGCTACATATTTGGA+AGG 0.549906 4_1:+18144023 Msa0538660:CDS
ATGGAAAGAGAATATGAAAG+AGG 0.565781 4_1:+18142967 Msa0538660:CDS
TGGAGCTCCATTCGATCCAA+AGG 0.580870 4_1:+18143069 Msa0538660:CDS
TTGGCTTTGTCAAATCTGGA+AGG 0.584704 4_1:-18144618 None:intergenic
ACTTACCCAACTTCTTACAT+GGG 0.585884 4_1:+18144568 Msa0538660:CDS
GAAAGTCCATCTGTGATTCA+GGG 0.593626 4_1:-18144750 None:intergenic
TTCTTACATGGGAAACAAAG+AGG 0.594456 4_1:+18144579 Msa0538660:CDS
ATTACTCCCTGAATCACAGA+TGG 0.605254 4_1:+18144744 Msa0538660:CDS
GGATGGAGAGGAATTATCCA+AGG 0.606339 4_1:+18144093 Msa0538660:CDS
TGCTGATGAAGACTCAAATG+AGG 0.614303 4_1:-18144710 None:intergenic
TCATCTTCTTCACTACTCCA+CGG 0.619548 4_1:-18143006 None:intergenic
AATGAGGGTACTGTGTGAAG+TGG 0.635827 4_1:-18144694 None:intergenic
CAAACATGTCCATAAAATTG+GGG 0.636075 4_1:-18144816 None:intergenic
GCTGATGAAGACTCAAATGA+GGG 0.648150 4_1:-18144709 None:intergenic
AAGTGGTTCCAATCAGCTGG+AGG 0.677910 4_1:+18144537 Msa0538660:CDS
TCAAAGCAGCAGAAACACAA+GGG 0.678275 4_1:+18144131 Msa0538660:CDS
GGGTACTGTGTGAAGTGGAG+TGG 0.686347 4_1:-18144689 None:intergenic
GGGTGGTGATTGAACTACAG+GGG 0.701174 4_1:+18143979 Msa0538660:CDS
AGGGTGGTGATTGAACTACA+GGG 0.704521 4_1:+18143978 Msa0538660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAGAATTAAAAAAACC+AGG - chr4_1:18143352-18143371 None:intergenic 15.0%
!!! TGGTTTTTTTAATTCTAAAT+TGG + chr4_1:18143351-18143370 Msa0538660:intron 15.0%
!!! AAATACATTGCTATATTTTT+GGG - chr4_1:18143641-18143660 None:intergenic 15.0%
!!! ATTAGAAAGTATGAAATTAA+TGG + chr4_1:18144488-18144507 Msa0538660:intron 15.0%
!!! AATTTAGAATTAAAAAAACC+AGG - chr4_1:18143352-18143371 None:intergenic 15.0%
!!! TGGTTTTTTTAATTCTAAAT+TGG + chr4_1:18143351-18143370 Msa0538660:intron 15.0%
!!! AAATACATTGCTATATTTTT+GGG - chr4_1:18143641-18143660 None:intergenic 15.0%
!!! ATTAGAAAGTATGAAATTAA+TGG + chr4_1:18144488-18144507 Msa0538660:intron 15.0%
!! TTGAAACATGTTAACAAATA+TGG + chr4_1:18143036-18143055 Msa0538660:CDS 20.0%
!! CAATGTTCTAATTAAGATTA+GGG - chr4_1:18143183-18143202 None:intergenic 20.0%
!! TCAATGTTCTAATTAAGATT+AGG - chr4_1:18143184-18143203 None:intergenic 20.0%
!! ATAACACCAAAAATTTGAAA+GGG - chr4_1:18143389-18143408 None:intergenic 20.0%
!! AATAACACCAAAAATTTGAA+AGG - chr4_1:18143390-18143409 None:intergenic 20.0%
!!! CAAATACATTGCTATATTTT+TGG - chr4_1:18143642-18143661 None:intergenic 20.0%
!!! TTGTTTGTTTCTACTATTTT+TGG - chr4_1:18143702-18143721 None:intergenic 20.0%
!! ACAAACACTGTTAAATTAAA+CGG - chr4_1:18143862-18143881 None:intergenic 20.0%
!! TAATCAAGTAAAAGTTGAAA+AGG + chr4_1:18144166-18144185 Msa0538660:CDS 20.0%
!! ATATTACAAATTTGCAATGT+AGG - chr4_1:18144342-18144361 None:intergenic 20.0%
!! TTGAAACATGTTAACAAATA+TGG + chr4_1:18143036-18143055 Msa0538660:CDS 20.0%
!! CAATGTTCTAATTAAGATTA+GGG - chr4_1:18143183-18143202 None:intergenic 20.0%
!! TCAATGTTCTAATTAAGATT+AGG - chr4_1:18143184-18143203 None:intergenic 20.0%
!! ATAACACCAAAAATTTGAAA+GGG - chr4_1:18143389-18143408 None:intergenic 20.0%
!! AATAACACCAAAAATTTGAA+AGG - chr4_1:18143390-18143409 None:intergenic 20.0%
!!! CAAATACATTGCTATATTTT+TGG - chr4_1:18143642-18143661 None:intergenic 20.0%
!!! TTGTTTGTTTCTACTATTTT+TGG - chr4_1:18143702-18143721 None:intergenic 20.0%
!! ACAAACACTGTTAAATTAAA+CGG - chr4_1:18143862-18143881 None:intergenic 20.0%
!! TAATCAAGTAAAAGTTGAAA+AGG + chr4_1:18144166-18144185 Msa0538660:CDS 20.0%
!! ATATTACAAATTTGCAATGT+AGG - chr4_1:18144342-18144361 None:intergenic 20.0%
! TGAAAGAGGTTACATAAAAA+AGG + chr4_1:18142981-18143000 Msa0538660:CDS 25.0%
! GAAAGAGGTTACATAAAAAA+GGG + chr4_1:18142982-18143001 Msa0538660:CDS 25.0%
!!! TTGTGTTTTGTGTTTTGTTA+TGG + chr4_1:18143259-18143278 Msa0538660:intron 25.0%
! AGAATTAAAAAAACCAGGAA+AGG - chr4_1:18143347-18143366 None:intergenic 25.0%
! TGTTTGATTCAATACTTCAT+AGG + chr4_1:18143578-18143597 Msa0538660:intron 25.0%
!!! TATATTTTTGGGATAAACCT+CGG - chr4_1:18143630-18143649 None:intergenic 25.0%
! AAGAAGTTACATTTATTGCA+AGG - chr4_1:18143765-18143784 None:intergenic 25.0%
!!! TTTGTTTTGTGATGAAAGTT+TGG + chr4_1:18143906-18143925 Msa0538660:intron 25.0%
!! TTCCAAATATGTAGCAATTT+TGG - chr4_1:18144024-18144043 None:intergenic 25.0%
! AAAATTGCTACATATTTGGA+AGG + chr4_1:18144023-18144042 Msa0538660:CDS 25.0%
!! ATAATGATGTGAAGAACTTT+TGG + chr4_1:18144054-18144073 Msa0538660:CDS 25.0%
!! TTGAAATGTCCAATTTTGTT+CGG + chr4_1:18144287-18144306 Msa0538660:intron 25.0%
! ATGAATCATCCGATTAATAT+CGG + chr4_1:18144360-18144379 Msa0538660:intron 25.0%
!! TAAGTTCACTTTCCAAATTT+TGG - chr4_1:18144648-18144667 None:intergenic 25.0%
! AATTTGGAAAGTGAACTTAA+TGG + chr4_1:18144649-18144668 Msa0538660:CDS 25.0%
! TAATGGAATTATTGAGTTTG+AGG + chr4_1:18144666-18144685 Msa0538660:CDS 25.0%
! TCAAACATGTCCATAAAATT+GGG - chr4_1:18144820-18144839 None:intergenic 25.0%
! AAGTATTCAAAAATCTCAGT+TGG - chr4_1:18144958-18144977 None:intergenic 25.0%
! TGAAAGAGGTTACATAAAAA+AGG + chr4_1:18142981-18143000 Msa0538660:CDS 25.0%
! GAAAGAGGTTACATAAAAAA+GGG + chr4_1:18142982-18143001 Msa0538660:CDS 25.0%
!!! TTGTGTTTTGTGTTTTGTTA+TGG + chr4_1:18143259-18143278 Msa0538660:intron 25.0%
! AGAATTAAAAAAACCAGGAA+AGG - chr4_1:18143347-18143366 None:intergenic 25.0%
! TGTTTGATTCAATACTTCAT+AGG + chr4_1:18143578-18143597 Msa0538660:intron 25.0%
!!! TATATTTTTGGGATAAACCT+CGG - chr4_1:18143630-18143649 None:intergenic 25.0%
! AAGAAGTTACATTTATTGCA+AGG - chr4_1:18143765-18143784 None:intergenic 25.0%
!!! TTTGTTTTGTGATGAAAGTT+TGG + chr4_1:18143906-18143925 Msa0538660:intron 25.0%
!! TTCCAAATATGTAGCAATTT+TGG - chr4_1:18144024-18144043 None:intergenic 25.0%
! AAAATTGCTACATATTTGGA+AGG + chr4_1:18144023-18144042 Msa0538660:CDS 25.0%
!! ATAATGATGTGAAGAACTTT+TGG + chr4_1:18144054-18144073 Msa0538660:CDS 25.0%
!! TTGAAATGTCCAATTTTGTT+CGG + chr4_1:18144287-18144306 Msa0538660:intron 25.0%
! ATGAATCATCCGATTAATAT+CGG + chr4_1:18144360-18144379 Msa0538660:intron 25.0%
!! TAAGTTCACTTTCCAAATTT+TGG - chr4_1:18144648-18144667 None:intergenic 25.0%
! AATTTGGAAAGTGAACTTAA+TGG + chr4_1:18144649-18144668 Msa0538660:CDS 25.0%
! TAATGGAATTATTGAGTTTG+AGG + chr4_1:18144666-18144685 Msa0538660:CDS 25.0%
! TCAAACATGTCCATAAAATT+GGG - chr4_1:18144820-18144839 None:intergenic 25.0%
! AAGTATTCAAAAATCTCAGT+TGG - chr4_1:18144958-18144977 None:intergenic 25.0%
ATGGAAAGAGAATATGAAAG+AGG + chr4_1:18142967-18142986 Msa0538660:CDS 30.0%
! AAAATCTTGTCGGTTAAGAT+GGG + chr4_1:18143110-18143129 Msa0538660:CDS 30.0%
!!! TGTTACTACGTTTTCAAGTT+GGG - chr4_1:18143150-18143169 None:intergenic 30.0%
!!! TTGTTACTACGTTTTCAAGT+TGG - chr4_1:18143151-18143170 None:intergenic 30.0%
! TTCACACCCTTTCAAATTTT+TGG + chr4_1:18143380-18143399 Msa0538660:intron 30.0%
TTAGACTGACACATTAACAT+CGG - chr4_1:18143545-18143564 None:intergenic 30.0%
! TACTTCATAGGTTGAAACAT+TGG + chr4_1:18143590-18143609 Msa0538660:intron 30.0%
TGCTATTATTGTTCAAGTGT+TGG + chr4_1:18143807-18143826 Msa0538660:intron 30.0%
GCTATTATTGTTCAAGTGTT+GGG + chr4_1:18143808-18143827 Msa0538660:intron 30.0%
! CTATTATTGTTCAAGTGTTG+GGG + chr4_1:18143809-18143828 Msa0538660:intron 30.0%
!!! ACAGTGTTTGTTTTAGTGTA+CGG + chr4_1:18143871-18143890 Msa0538660:intron 30.0%
ATGTGTGATTTCAATTGTAG+AGG + chr4_1:18143930-18143949 Msa0538660:intron 30.0%
! AGTTTTCATTAGAGGAAGAA+AGG + chr4_1:18143958-18143977 Msa0538660:CDS 30.0%
! GTTTTCATTAGAGGAAGAAA+GGG + chr4_1:18143959-18143978 Msa0538660:CDS 30.0%
TCAAAATGATTGTGTAATCG+CGG - chr4_1:18144271-18144290 None:intergenic 30.0%
TTCTAGTCTCCGATATTAAT+CGG - chr4_1:18144372-18144391 None:intergenic 30.0%
!! AAGCGATAATTTTAGTGTGA+AGG + chr4_1:18144431-18144450 Msa0538660:intron 30.0%
!! AGCGATAATTTTAGTGTGAA+GGG + chr4_1:18144432-18144451 Msa0538660:intron 30.0%
ATGGTGAAAATGTCTATTTC+AGG + chr4_1:18144507-18144526 Msa0538660:intron 30.0%
AAAGCCAAACTACCAAAATT+TGG + chr4_1:18144633-18144652 Msa0538660:CDS 30.0%
!! CTTTCCAAATTTTGGTAGTT+TGG - chr4_1:18144640-18144659 None:intergenic 30.0%
CAAACATGTCCATAAAATTG+GGG - chr4_1:18144819-18144838 None:intergenic 30.0%
CTCAAACATGTCCATAAAAT+TGG - chr4_1:18144821-18144840 None:intergenic 30.0%
! AAAAATGTTCAGAAAGTGTG+TGG + chr4_1:18144845-18144864 Msa0538660:CDS 30.0%
ATGGAAAGAGAATATGAAAG+AGG + chr4_1:18142967-18142986 Msa0538660:CDS 30.0%
! AAAATCTTGTCGGTTAAGAT+GGG + chr4_1:18143110-18143129 Msa0538660:CDS 30.0%
!!! TGTTACTACGTTTTCAAGTT+GGG - chr4_1:18143150-18143169 None:intergenic 30.0%
!!! TTGTTACTACGTTTTCAAGT+TGG - chr4_1:18143151-18143170 None:intergenic 30.0%
! TTCACACCCTTTCAAATTTT+TGG + chr4_1:18143380-18143399 Msa0538660:intron 30.0%
TTAGACTGACACATTAACAT+CGG - chr4_1:18143545-18143564 None:intergenic 30.0%
! TACTTCATAGGTTGAAACAT+TGG + chr4_1:18143590-18143609 Msa0538660:intron 30.0%
TGCTATTATTGTTCAAGTGT+TGG + chr4_1:18143807-18143826 Msa0538660:intron 30.0%
GCTATTATTGTTCAAGTGTT+GGG + chr4_1:18143808-18143827 Msa0538660:intron 30.0%
! CTATTATTGTTCAAGTGTTG+GGG + chr4_1:18143809-18143828 Msa0538660:intron 30.0%
!!! ACAGTGTTTGTTTTAGTGTA+CGG + chr4_1:18143871-18143890 Msa0538660:intron 30.0%
ATGTGTGATTTCAATTGTAG+AGG + chr4_1:18143930-18143949 Msa0538660:intron 30.0%
! AGTTTTCATTAGAGGAAGAA+AGG + chr4_1:18143958-18143977 Msa0538660:CDS 30.0%
! GTTTTCATTAGAGGAAGAAA+GGG + chr4_1:18143959-18143978 Msa0538660:CDS 30.0%
TCAAAATGATTGTGTAATCG+CGG - chr4_1:18144271-18144290 None:intergenic 30.0%
TTCTAGTCTCCGATATTAAT+CGG - chr4_1:18144372-18144391 None:intergenic 30.0%
!! AAGCGATAATTTTAGTGTGA+AGG + chr4_1:18144431-18144450 Msa0538660:intron 30.0%
!! AGCGATAATTTTAGTGTGAA+GGG + chr4_1:18144432-18144451 Msa0538660:intron 30.0%
ATGGTGAAAATGTCTATTTC+AGG + chr4_1:18144507-18144526 Msa0538660:intron 30.0%
AAAGCCAAACTACCAAAATT+TGG + chr4_1:18144633-18144652 Msa0538660:CDS 30.0%
!! CTTTCCAAATTTTGGTAGTT+TGG - chr4_1:18144640-18144659 None:intergenic 30.0%
CAAACATGTCCATAAAATTG+GGG - chr4_1:18144819-18144838 None:intergenic 30.0%
CTCAAACATGTCCATAAAAT+TGG - chr4_1:18144821-18144840 None:intergenic 30.0%
! AAAAATGTTCAGAAAGTGTG+TGG + chr4_1:18144845-18144864 Msa0538660:CDS 30.0%
ACAAATATGGTCCTAGAGAT+TGG + chr4_1:18143049-18143068 Msa0538660:CDS 35.0%
CAAGAACTGGAAAATCTTGT+CGG + chr4_1:18143100-18143119 Msa0538660:CDS 35.0%
! GAAAATCTTGTCGGTTAAGA+TGG + chr4_1:18143109-18143128 Msa0538660:CDS 35.0%
ACTGACACTTCTGATCAAAT+GGG + chr4_1:18143452-18143471 Msa0538660:intron 35.0%
TTCTGATCAAATGGGTGATT+GGG + chr4_1:18143460-18143479 Msa0538660:intron 35.0%
GTAATCACATGTGTTGAAGT+TGG - chr4_1:18143492-18143511 None:intergenic 35.0%
! AGGATGCAAGTTTTCATTAG+AGG + chr4_1:18143950-18143969 Msa0538660:CDS 35.0%
GGCCAAAATTGCTACATATT+TGG + chr4_1:18144019-18144038 Msa0538660:CDS 35.0%
! GTGAAGTATCCGAACAAAAT+TGG - chr4_1:18144299-18144318 None:intergenic 35.0%
TACTTACCCAACTTCTTACA+TGG + chr4_1:18144567-18144586 Msa0538660:CDS 35.0%
ACTTACCCAACTTCTTACAT+GGG + chr4_1:18144568-18144587 Msa0538660:CDS 35.0%
TGTTTCCCATGTAAGAAGTT+GGG - chr4_1:18144576-18144595 None:intergenic 35.0%
TTGTTTCCCATGTAAGAAGT+TGG - chr4_1:18144577-18144596 None:intergenic 35.0%
TTCTTACATGGGAAACAAAG+AGG + chr4_1:18144579-18144598 Msa0538660:CDS 35.0%
!! TAGTTTGGCTTTGTCAAATC+TGG - chr4_1:18144625-18144644 None:intergenic 35.0%
TCCATAAAATTGGGGTCAAA+GGG - chr4_1:18144811-18144830 None:intergenic 35.0%
AAGTTCAAACTGCTTCTTTC+AGG + chr4_1:18144927-18144946 Msa0538660:CDS 35.0%
ACAAATATGGTCCTAGAGAT+TGG + chr4_1:18143049-18143068 Msa0538660:CDS 35.0%
CAAGAACTGGAAAATCTTGT+CGG + chr4_1:18143100-18143119 Msa0538660:CDS 35.0%
! GAAAATCTTGTCGGTTAAGA+TGG + chr4_1:18143109-18143128 Msa0538660:CDS 35.0%
ACTGACACTTCTGATCAAAT+GGG + chr4_1:18143452-18143471 Msa0538660:intron 35.0%
TTCTGATCAAATGGGTGATT+GGG + chr4_1:18143460-18143479 Msa0538660:intron 35.0%
GTAATCACATGTGTTGAAGT+TGG - chr4_1:18143492-18143511 None:intergenic 35.0%
! AGGATGCAAGTTTTCATTAG+AGG + chr4_1:18143950-18143969 Msa0538660:CDS 35.0%
GGCCAAAATTGCTACATATT+TGG + chr4_1:18144019-18144038 Msa0538660:CDS 35.0%
! GTGAAGTATCCGAACAAAAT+TGG - chr4_1:18144299-18144318 None:intergenic 35.0%
TACTTACCCAACTTCTTACA+TGG + chr4_1:18144567-18144586 Msa0538660:CDS 35.0%
ACTTACCCAACTTCTTACAT+GGG + chr4_1:18144568-18144587 Msa0538660:CDS 35.0%
TGTTTCCCATGTAAGAAGTT+GGG - chr4_1:18144576-18144595 None:intergenic 35.0%
TTGTTTCCCATGTAAGAAGT+TGG - chr4_1:18144577-18144596 None:intergenic 35.0%
TTCTTACATGGGAAACAAAG+AGG + chr4_1:18144579-18144598 Msa0538660:CDS 35.0%
!! TAGTTTGGCTTTGTCAAATC+TGG - chr4_1:18144625-18144644 None:intergenic 35.0%
TCCATAAAATTGGGGTCAAA+GGG - chr4_1:18144811-18144830 None:intergenic 35.0%
AAGTTCAAACTGCTTCTTTC+AGG + chr4_1:18144927-18144946 Msa0538660:CDS 35.0%
GTTACATAAAAAAGGGACCG+TGG + chr4_1:18142989-18143008 Msa0538660:CDS 40.0%
TCATCTTCTTCACTACTCCA+CGG - chr4_1:18143009-18143028 None:intergenic 40.0%
CAAAAGACCTTTGGATCGAA+TGG - chr4_1:18143079-18143098 None:intergenic 40.0%
AGTTCTTGGCAAAAGACCTT+TGG - chr4_1:18143088-18143107 None:intergenic 40.0%
! AAAGGTCTTTTGCCAAGAAC+TGG + chr4_1:18143087-18143106 Msa0538660:CDS 40.0%
! CGACAAGATTTTCCAGTTCT+TGG - chr4_1:18143102-18143121 None:intergenic 40.0%
TGTTTATCTTGCTCCTTTCC+TGG + chr4_1:18143331-18143350 Msa0538660:intron 40.0%
CACTGACACTTCTGATCAAA+TGG + chr4_1:18143451-18143470 Msa0538660:intron 40.0%
CTTCTGATCAAATGGGTGAT+TGG + chr4_1:18143459-18143478 Msa0538660:intron 40.0%
TGGATATAGCAATGTAACCG+AGG + chr4_1:18143610-18143629 Msa0538660:intron 40.0%
TTCATTAGAGGAAGAAAGGG+TGG + chr4_1:18143962-18143981 Msa0538660:CDS 40.0%
ATTGAACTACAGGGGCAATT+TGG + chr4_1:18143987-18144006 Msa0538660:CDS 40.0%
TTGAACTACAGGGGCAATTT+GGG + chr4_1:18143988-18144007 Msa0538660:CDS 40.0%
!!! TGAAGAACTTTTGGAGTAGC+AGG + chr4_1:18144063-18144082 Msa0538660:CDS 40.0%
! TTTGGAGTAGCAGGAGAAAA+AGG + chr4_1:18144072-18144091 Msa0538660:CDS 40.0%
!! TTGTGTTTCTGCTGCTTTGA+TGG - chr4_1:18144131-18144150 None:intergenic 40.0%
ATCAAAGCAGCAGAAACACA+AGG + chr4_1:18144130-18144149 Msa0538660:CDS 40.0%
TCAAAGCAGCAGAAACACAA+GGG + chr4_1:18144131-18144150 Msa0538660:CDS 40.0%
TGAATGCAGGGTTATCTTGA+GGG + chr4_1:18144406-18144425 Msa0538660:intron 40.0%
!! CTATTTCAGGTTCCTGAAAG+TGG + chr4_1:18144520-18144539 Msa0538660:intron 40.0%
! AAGATTTTCCTCCAGCTGAT+TGG - chr4_1:18144548-18144567 None:intergenic 40.0%
!! TTGGCTTTGTCAAATCTGGA+AGG - chr4_1:18144621-18144640 None:intergenic 40.0%
GCTGATGAAGACTCAAATGA+GGG - chr4_1:18144712-18144731 None:intergenic 40.0%
TGCTGATGAAGACTCAAATG+AGG - chr4_1:18144713-18144732 None:intergenic 40.0%
ATCTGTGATTCAGGGAGTAA+TGG - chr4_1:18144745-18144764 None:intergenic 40.0%
ATTACTCCCTGAATCACAGA+TGG + chr4_1:18144744-18144763 Msa0538660:CDS 40.0%
GAAAGTCCATCTGTGATTCA+GGG - chr4_1:18144753-18144772 None:intergenic 40.0%
AGGGATCTTGAACAAGATCT+TGG - chr4_1:18144792-18144811 None:intergenic 40.0%
! TCCCTTTGACCCCAATTTTA+TGG + chr4_1:18144807-18144826 Msa0538660:CDS 40.0%
GTCCATAAAATTGGGGTCAA+AGG - chr4_1:18144812-18144831 None:intergenic 40.0%
TTTCCTTCAAGTCCAAGAGT+TGG - chr4_1:18144895-18144914 None:intergenic 40.0%
GTTACATAAAAAAGGGACCG+TGG + chr4_1:18142989-18143008 Msa0538660:CDS 40.0%
TCATCTTCTTCACTACTCCA+CGG - chr4_1:18143009-18143028 None:intergenic 40.0%
CAAAAGACCTTTGGATCGAA+TGG - chr4_1:18143079-18143098 None:intergenic 40.0%
AGTTCTTGGCAAAAGACCTT+TGG - chr4_1:18143088-18143107 None:intergenic 40.0%
! AAAGGTCTTTTGCCAAGAAC+TGG + chr4_1:18143087-18143106 Msa0538660:CDS 40.0%
! CGACAAGATTTTCCAGTTCT+TGG - chr4_1:18143102-18143121 None:intergenic 40.0%
TGTTTATCTTGCTCCTTTCC+TGG + chr4_1:18143331-18143350 Msa0538660:intron 40.0%
CACTGACACTTCTGATCAAA+TGG + chr4_1:18143451-18143470 Msa0538660:intron 40.0%
CTTCTGATCAAATGGGTGAT+TGG + chr4_1:18143459-18143478 Msa0538660:intron 40.0%
TGGATATAGCAATGTAACCG+AGG + chr4_1:18143610-18143629 Msa0538660:intron 40.0%
TTCATTAGAGGAAGAAAGGG+TGG + chr4_1:18143962-18143981 Msa0538660:CDS 40.0%
ATTGAACTACAGGGGCAATT+TGG + chr4_1:18143987-18144006 Msa0538660:CDS 40.0%
TTGAACTACAGGGGCAATTT+GGG + chr4_1:18143988-18144007 Msa0538660:CDS 40.0%
!!! TGAAGAACTTTTGGAGTAGC+AGG + chr4_1:18144063-18144082 Msa0538660:CDS 40.0%
! TTTGGAGTAGCAGGAGAAAA+AGG + chr4_1:18144072-18144091 Msa0538660:CDS 40.0%
!! TTGTGTTTCTGCTGCTTTGA+TGG - chr4_1:18144131-18144150 None:intergenic 40.0%
ATCAAAGCAGCAGAAACACA+AGG + chr4_1:18144130-18144149 Msa0538660:CDS 40.0%
TCAAAGCAGCAGAAACACAA+GGG + chr4_1:18144131-18144150 Msa0538660:CDS 40.0%
TGAATGCAGGGTTATCTTGA+GGG + chr4_1:18144406-18144425 Msa0538660:intron 40.0%
!! CTATTTCAGGTTCCTGAAAG+TGG + chr4_1:18144520-18144539 Msa0538660:intron 40.0%
! AAGATTTTCCTCCAGCTGAT+TGG - chr4_1:18144548-18144567 None:intergenic 40.0%
!! TTGGCTTTGTCAAATCTGGA+AGG - chr4_1:18144621-18144640 None:intergenic 40.0%
GCTGATGAAGACTCAAATGA+GGG - chr4_1:18144712-18144731 None:intergenic 40.0%
TGCTGATGAAGACTCAAATG+AGG - chr4_1:18144713-18144732 None:intergenic 40.0%
ATCTGTGATTCAGGGAGTAA+TGG - chr4_1:18144745-18144764 None:intergenic 40.0%
ATTACTCCCTGAATCACAGA+TGG + chr4_1:18144744-18144763 Msa0538660:CDS 40.0%
GAAAGTCCATCTGTGATTCA+GGG - chr4_1:18144753-18144772 None:intergenic 40.0%
AGGGATCTTGAACAAGATCT+TGG - chr4_1:18144792-18144811 None:intergenic 40.0%
! TCCCTTTGACCCCAATTTTA+TGG + chr4_1:18144807-18144826 Msa0538660:CDS 40.0%
GTCCATAAAATTGGGGTCAA+AGG - chr4_1:18144812-18144831 None:intergenic 40.0%
TTTCCTTCAAGTCCAAGAGT+TGG - chr4_1:18144895-18144914 None:intergenic 40.0%
!! CAGAAGTGTCAGTGTTACAG+AGG - chr4_1:18143445-18143464 None:intergenic 45.0%
AAGGGTGGTGATTGAACTAC+AGG + chr4_1:18143977-18143996 Msa0538660:CDS 45.0%
AGGGTGGTGATTGAACTACA+GGG + chr4_1:18143978-18143997 Msa0538660:CDS 45.0%
AGGGGCAATTTGGGAACAAA+TGG + chr4_1:18143997-18144016 Msa0538660:CDS 45.0%
GGGGCAATTTGGGAACAAAT+GGG + chr4_1:18143998-18144017 Msa0538660:CDS 45.0%
GAGTAGCAGGAGAAAAAGGA+TGG + chr4_1:18144076-18144095 Msa0538660:CDS 45.0%
GGATGGAGAGGAATTATCCA+AGG + chr4_1:18144093-18144112 Msa0538660:CDS 45.0%
!! TGTTTCTGCTGCTTTGATGG+TGG - chr4_1:18144128-18144147 None:intergenic 45.0%
GTGAATGCAGGGTTATCTTG+AGG + chr4_1:18144405-18144424 Msa0538660:intron 45.0%
AGCTGATTGGAACCACTTTC+AGG - chr4_1:18144535-18144554 None:intergenic 45.0%
TGAAAGTGGTTCCAATCAGC+TGG + chr4_1:18144534-18144553 Msa0538660:CDS 45.0%
!! AATGAGGGTACTGTGTGAAG+TGG - chr4_1:18144697-18144716 None:intergenic 45.0%
GGAAAGTCCATCTGTGATTC+AGG - chr4_1:18144754-18144773 None:intergenic 45.0%
GAACAAGATCTTGGCACTCT+GGG - chr4_1:18144783-18144802 None:intergenic 45.0%
TGAACAAGATCTTGGCACTC+TGG - chr4_1:18144784-18144803 None:intergenic 45.0%
AGTGTGTGGAGCAAGAAGAT+TGG + chr4_1:18144859-18144878 Msa0538660:CDS 45.0%
GGAACTAAGTTGCCAACTCT+TGG + chr4_1:18144880-18144899 Msa0538660:CDS 45.0%
TTGCCAACTCTTGGACTTGA+AGG + chr4_1:18144889-18144908 Msa0538660:CDS 45.0%
!! CAGAAGTGTCAGTGTTACAG+AGG - chr4_1:18143445-18143464 None:intergenic 45.0%
AAGGGTGGTGATTGAACTAC+AGG + chr4_1:18143977-18143996 Msa0538660:CDS 45.0%
AGGGTGGTGATTGAACTACA+GGG + chr4_1:18143978-18143997 Msa0538660:CDS 45.0%
AGGGGCAATTTGGGAACAAA+TGG + chr4_1:18143997-18144016 Msa0538660:CDS 45.0%
GGGGCAATTTGGGAACAAAT+GGG + chr4_1:18143998-18144017 Msa0538660:CDS 45.0%
GAGTAGCAGGAGAAAAAGGA+TGG + chr4_1:18144076-18144095 Msa0538660:CDS 45.0%
GGATGGAGAGGAATTATCCA+AGG + chr4_1:18144093-18144112 Msa0538660:CDS 45.0%
!! TGTTTCTGCTGCTTTGATGG+TGG - chr4_1:18144128-18144147 None:intergenic 45.0%
GTGAATGCAGGGTTATCTTG+AGG + chr4_1:18144405-18144424 Msa0538660:intron 45.0%
AGCTGATTGGAACCACTTTC+AGG - chr4_1:18144535-18144554 None:intergenic 45.0%
TGAAAGTGGTTCCAATCAGC+TGG + chr4_1:18144534-18144553 Msa0538660:CDS 45.0%
!! AATGAGGGTACTGTGTGAAG+TGG - chr4_1:18144697-18144716 None:intergenic 45.0%
GGAAAGTCCATCTGTGATTC+AGG - chr4_1:18144754-18144773 None:intergenic 45.0%
GAACAAGATCTTGGCACTCT+GGG - chr4_1:18144783-18144802 None:intergenic 45.0%
TGAACAAGATCTTGGCACTC+TGG - chr4_1:18144784-18144803 None:intergenic 45.0%
AGTGTGTGGAGCAAGAAGAT+TGG + chr4_1:18144859-18144878 Msa0538660:CDS 45.0%
GGAACTAAGTTGCCAACTCT+TGG + chr4_1:18144880-18144899 Msa0538660:CDS 45.0%
TTGCCAACTCTTGGACTTGA+AGG + chr4_1:18144889-18144908 Msa0538660:CDS 45.0%
CGAATGGAGCTCCAATCTCT+AGG - chr4_1:18143063-18143082 None:intergenic 50.0%
TGGAGCTCCATTCGATCCAA+AGG + chr4_1:18143069-18143088 Msa0538660:CDS 50.0%
GGGTGGTGATTGAACTACAG+GGG + chr4_1:18143979-18143998 Msa0538660:CDS 50.0%
GCAGGAGAAAAAGGATGGAG+AGG + chr4_1:18144081-18144100 Msa0538660:CDS 50.0%
!! TGCTGCTTTGATGGTGGTGA+TGG - chr4_1:18144122-18144141 None:intergenic 50.0%
TCGTGTGACTACGTGAATGC+AGG + chr4_1:18144393-18144412 Msa0538660:intron 50.0%
CGTGTGACTACGTGAATGCA+GGG + chr4_1:18144394-18144413 Msa0538660:intron 50.0%
AAGTGGTTCCAATCAGCTGG+AGG + chr4_1:18144537-18144556 Msa0538660:CDS 50.0%
! TCTTGGCACTCTGGGAATAG+TGG - chr4_1:18144775-18144794 None:intergenic 50.0%
CGAATGGAGCTCCAATCTCT+AGG - chr4_1:18143063-18143082 None:intergenic 50.0%
TGGAGCTCCATTCGATCCAA+AGG + chr4_1:18143069-18143088 Msa0538660:CDS 50.0%
GGGTGGTGATTGAACTACAG+GGG + chr4_1:18143979-18143998 Msa0538660:CDS 50.0%
GCAGGAGAAAAAGGATGGAG+AGG + chr4_1:18144081-18144100 Msa0538660:CDS 50.0%
!! TGCTGCTTTGATGGTGGTGA+TGG - chr4_1:18144122-18144141 None:intergenic 50.0%
TCGTGTGACTACGTGAATGC+AGG + chr4_1:18144393-18144412 Msa0538660:intron 50.0%
CGTGTGACTACGTGAATGCA+GGG + chr4_1:18144394-18144413 Msa0538660:intron 50.0%
AAGTGGTTCCAATCAGCTGG+AGG + chr4_1:18144537-18144556 Msa0538660:CDS 50.0%
! TCTTGGCACTCTGGGAATAG+TGG - chr4_1:18144775-18144794 None:intergenic 50.0%
!! GATGGTGGTGATGGTGTCCT+TGG - chr4_1:18144113-18144132 None:intergenic 55.0%
! GGGTACTGTGTGAAGTGGAG+TGG - chr4_1:18144692-18144711 None:intergenic 55.0%
!! GATGGTGGTGATGGTGTCCT+TGG - chr4_1:18144113-18144132 None:intergenic 55.0%
! GGGTACTGTGTGAAGTGGAG+TGG - chr4_1:18144692-18144711 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 18142967 18144987 18142967 ID=Msa0538660;Name=Msa0538660
chr4_1 mRNA 18142967 18144987 18142967 ID=Msa0538660-mRNA-1;Parent=Msa0538660;Name=Msa0538660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|296
chr4_1 exon 18142967 18143160 18142967 ID=Msa0538660-mRNA-1:exon:5355;Parent=Msa0538660-mRNA-1
chr4_1 exon 18143950 18144187 18143950 ID=Msa0538660-mRNA-1:exon:5356;Parent=Msa0538660-mRNA-1
chr4_1 exon 18144529 18144987 18144529 ID=Msa0538660-mRNA-1:exon:5357;Parent=Msa0538660-mRNA-1
chr4_1 CDS 18142967 18143160 18142967 ID=Msa0538660-mRNA-1:cds;Parent=Msa0538660-mRNA-1
chr4_1 CDS 18143950 18144187 18143950 ID=Msa0538660-mRNA-1:cds;Parent=Msa0538660-mRNA-1
chr4_1 CDS 18144529 18144987 18144529 ID=Msa0538660-mRNA-1:cds;Parent=Msa0538660-mRNA-1
Gene Sequence

>Msa0538660

ATGGAAAGAGAATATGAAAGAGGTTACATAAAAAAGGGACCGTGGAGTAGTGAAGAAGATGAAGTGCTGTTGAAACATGTTAACAAATATGGTCCTAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTTTGCCAAGAACTGGAAAATCTTGTCGGTTAAGATGGGTTAATAAGCTTAGACCCAACTTGAAAACAGGATGCAAGTTTTCATTAGAGGAAGAAAGGGTGGTGATTGAACTACAGGGGCAATTTGGGAACAAATGGGCCAAAATTGCTACATATTTGGAAGGAAGAACAGATAATGATGTGAAGAACTTTTGGAGTAGCAGGAGAAAAAGGATGGAGAGGAATTATCCAAGGACACCATCACCACCATCAAAGCAGCAGAAACACAAGGGAAAAGCTATTTCTAATCAAGTAAAAGTTGAAAAGGTTCCTGAAAGTGGTTCCAATCAGCTGGAGGAAAATCTTACTTACCCAACTTCTTACATGGGAAACAAAGAGGAATTCAAGATGATCAACCTTCCAGATTTGACAAAGCCAAACTACCAAAATTTGGAAAGTGAACTTAATGGAATTATTGAGTTTGAGGCCACTCCACTTCACACAGTACCCTCATTTGAGTCTTCATCAGCATACAACTTTCCATTACTCCCTGAATCACAGATGGACTTTCCACTATTCCCAGAGTGCCAAGATCTTGTTCAAGATCCCTTTGACCCCAATTTTATGGACATGTTTGAGCAGAAAAAATGTTCAGAAAGTGTGTGGAGCAAGAAGATTGGAACTAAGTTGCCAACTCTTGGACTTGAAGGAAATTCTCAGAGTACAAGTTCAAACTGCTTCTTTCAGGACATTCCAACTGAGATTTTTGAATACTTTTCTCAGTAA
Protein sequence

>Msa0538660

MEREYERGYIKKGPWSSEEDEVLLKHVNKYGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFSLEEERVVIELQGQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRMERNYPRTPSPPSKQQKHKGKAISNQVKVEKVPESGSNQLEENLTYPTSYMGNKEEFKMINLPDLTKPNYQNLESELNGIIEFEATPLHTVPSFESSSAYNFPLLPESQMDFPLFPECQDLVQDPFDPNFMDMFEQKKCSESVWSKKIGTKLPTLGLEGNSQSTSSNCFFQDIPTEIFEYFSQ*