Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539690 | XP_013455273.1 | 95.897 | 195 | 5 | 2 | 1 | 193 | 1 | 194 | 6.15e-133 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539690 | sp|Q9C8P8|BH080_ARATH | 44.444 | 234 | 70 | 6 | 11 | 189 | 25 | 253 | 1.22e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539690 | I3T2V2 | 95.897 | 195 | 5 | 2 | 1 | 193 | 1 | 194 | 2.94e-133 | 380 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0539690 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539690 | MtrunA17_Chr4g0014771 | 95.897 | 195 | 5 | 2 | 1 | 193 | 1 | 194 | 5.66e-137 | 380 |
| Msa0539690 | MtrunA17_Chr1g0174271 | 67.416 | 89 | 27 | 1 | 103 | 189 | 282 | 370 | 1.49e-36 | 130 |
| Msa0539690 | MtrunA17_Chr4g0032951 | 74.684 | 79 | 20 | 0 | 112 | 190 | 350 | 428 | 2.12e-36 | 131 |
| Msa0539690 | MtrunA17_Chr3g0087771 | 68.132 | 91 | 27 | 1 | 105 | 193 | 308 | 398 | 1.01e-35 | 129 |
| Msa0539690 | MtrunA17_Chr8g0351881 | 67.045 | 88 | 27 | 1 | 105 | 190 | 302 | 389 | 9.65e-35 | 126 |
| Msa0539690 | MtrunA17_Chr7g0258181 | 64.368 | 87 | 29 | 1 | 105 | 189 | 229 | 315 | 3.76e-33 | 120 |
| Msa0539690 | MtrunA17_Chr1g0213791 | 60.440 | 91 | 36 | 0 | 99 | 189 | 247 | 337 | 3.86e-32 | 118 |
| Msa0539690 | MtrunA17_Chr2g0329041 | 68.966 | 87 | 24 | 2 | 105 | 189 | 318 | 403 | 6.73e-32 | 119 |
| Msa0539690 | MtrunA17_Chr4g0074161 | 62.121 | 66 | 24 | 1 | 116 | 181 | 205 | 269 | 2.87e-19 | 84.3 |
| Msa0539690 | MtrunA17_Chr3g0131771 | 60.000 | 65 | 26 | 0 | 117 | 181 | 147 | 211 | 6.54e-18 | 80.1 |
| Msa0539690 | MtrunA17_Chr1g0190731 | 59.091 | 66 | 26 | 1 | 116 | 181 | 192 | 256 | 1.35e-17 | 79.3 |
| Msa0539690 | MtrunA17_Chr1g0152131 | 58.462 | 65 | 27 | 0 | 117 | 181 | 260 | 324 | 8.31e-17 | 77.4 |
| Msa0539690 | MtrunA17_Chr5g0421111 | 56.923 | 65 | 28 | 0 | 117 | 181 | 365 | 429 | 9.24e-16 | 74.7 |
| Msa0539690 | MtrunA17_Chr8g0365941 | 55.385 | 65 | 29 | 0 | 117 | 181 | 305 | 369 | 1.06e-15 | 74.3 |
| Msa0539690 | MtrunA17_Chr8g0385911 | 55.385 | 65 | 29 | 0 | 117 | 181 | 145 | 209 | 1.08e-15 | 73.9 |
| Msa0539690 | MtrunA17_Chr3g0144641 | 55.385 | 65 | 29 | 0 | 117 | 181 | 191 | 255 | 1.81e-15 | 73.6 |
| Msa0539690 | MtrunA17_Chr7g0234761 | 55.385 | 65 | 29 | 0 | 117 | 181 | 317 | 381 | 1.84e-15 | 73.9 |
| Msa0539690 | MtrunA17_Chr8g0339091 | 55.385 | 65 | 29 | 0 | 117 | 181 | 291 | 355 | 2.64e-15 | 73.2 |
| Msa0539690 | MtrunA17_Chr4g0035101 | 53.846 | 65 | 30 | 0 | 117 | 181 | 143 | 207 | 1.12e-14 | 70.9 |
| Msa0539690 | MtrunA17_Chr1g0152651 | 57.576 | 66 | 27 | 1 | 116 | 181 | 273 | 337 | 2.53e-14 | 70.1 |
| Msa0539690 | MtrunA17_Chr8g0363921 | 49.231 | 65 | 33 | 0 | 117 | 181 | 151 | 215 | 2.03e-13 | 67.0 |
| Msa0539690 | MtrunA17_Chr5g0415291 | 47.692 | 65 | 34 | 0 | 117 | 181 | 112 | 176 | 3.87e-13 | 65.9 |
| Msa0539690 | MtrunA17_Chr3g0134741 | 53.030 | 66 | 30 | 1 | 116 | 181 | 228 | 292 | 4.01e-13 | 66.6 |
| Msa0539690 | MtrunA17_Chr5g0393721 | 46.667 | 90 | 42 | 3 | 92 | 181 | 204 | 287 | 4.69e-13 | 66.2 |
| Msa0539690 | MtrunA17_Chr6g0484271 | 49.231 | 65 | 33 | 0 | 117 | 181 | 155 | 219 | 6.30e-13 | 65.5 |
| Msa0539690 | MtrunA17_Chr7g0258161 | 49.231 | 65 | 33 | 0 | 117 | 181 | 173 | 237 | 2.35e-12 | 64.3 |
| Msa0539690 | MtrunA17_Chr1g0184841 | 62.121 | 66 | 24 | 1 | 116 | 181 | 119 | 183 | 4.09e-12 | 63.5 |
| Msa0539690 | MtrunA17_Chr3g0134001 | 56.140 | 57 | 24 | 1 | 127 | 183 | 181 | 236 | 6.54e-12 | 62.8 |
| Msa0539690 | MtrunA17_Chr1g0174161 | 46.154 | 65 | 35 | 0 | 117 | 181 | 160 | 224 | 1.12e-11 | 62.4 |
| Msa0539690 | MtrunA17_Chr8g0384141 | 59.259 | 54 | 21 | 1 | 127 | 180 | 124 | 176 | 2.44e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539690 | AT1G35460.1 | 44.444 | 234 | 70 | 6 | 11 | 189 | 25 | 253 | 1.24e-49 | 162 |
| Msa0539690 | AT4G09180.1 | 46.667 | 195 | 68 | 5 | 10 | 193 | 90 | 259 | 2.60e-43 | 145 |
| Msa0539690 | AT1G51140.1 | 67.442 | 86 | 28 | 0 | 105 | 190 | 292 | 377 | 1.48e-36 | 131 |
| Msa0539690 | AT2G42280.1 | 74.074 | 81 | 21 | 0 | 109 | 189 | 271 | 351 | 1.43e-35 | 128 |
| Msa0539690 | AT2G43140.1 | 68.293 | 82 | 26 | 0 | 108 | 189 | 125 | 206 | 8.64e-34 | 119 |
| Msa0539690 | AT2G43140.2 | 68.293 | 82 | 26 | 0 | 108 | 189 | 222 | 303 | 2.28e-33 | 121 |
| Msa0539690 | AT1G05805.1 | 60.870 | 92 | 33 | 1 | 105 | 193 | 268 | 359 | 3.39e-32 | 119 |
| Msa0539690 | AT2G42280.3 | 80.000 | 70 | 14 | 0 | 109 | 178 | 271 | 340 | 1.40e-31 | 117 |
| Msa0539690 | AT1G35460.2 | 39.000 | 200 | 62 | 6 | 11 | 155 | 25 | 219 | 5.13e-28 | 105 |
| Msa0539690 | AT2G24260.2 | 63.636 | 66 | 23 | 1 | 116 | 181 | 34 | 98 | 3.91e-20 | 85.1 |
| Msa0539690 | AT2G24260.1 | 62.687 | 67 | 24 | 1 | 115 | 181 | 136 | 201 | 1.92e-19 | 84.7 |
| Msa0539690 | AT4G30980.1 | 62.121 | 66 | 24 | 1 | 116 | 181 | 129 | 193 | 2.88e-19 | 84.0 |
| Msa0539690 | AT4G30980.2 | 62.121 | 66 | 24 | 1 | 116 | 181 | 177 | 241 | 5.80e-19 | 83.6 |
| Msa0539690 | AT5G58010.1 | 59.091 | 66 | 26 | 1 | 116 | 181 | 98 | 162 | 1.09e-18 | 82.0 |
| Msa0539690 | AT4G34530.1 | 55.128 | 78 | 35 | 0 | 104 | 181 | 159 | 236 | 1.95e-17 | 79.0 |
| Msa0539690 | AT5G50915.3 | 58.462 | 65 | 27 | 0 | 117 | 181 | 136 | 200 | 8.85e-17 | 76.6 |
| Msa0539690 | AT5G50915.4 | 58.462 | 65 | 27 | 0 | 117 | 181 | 136 | 200 | 8.85e-17 | 76.6 |
| Msa0539690 | AT5G50915.1 | 58.462 | 65 | 27 | 0 | 117 | 181 | 136 | 200 | 1.12e-16 | 76.3 |
| Msa0539690 | AT5G50915.2 | 58.462 | 65 | 27 | 0 | 117 | 181 | 136 | 200 | 1.12e-16 | 76.3 |
| Msa0539690 | AT1G10120.2 | 58.462 | 65 | 27 | 0 | 117 | 181 | 206 | 270 | 3.62e-16 | 75.9 |
| Msa0539690 | AT1G10120.1 | 58.462 | 65 | 27 | 0 | 117 | 181 | 206 | 270 | 3.62e-16 | 75.9 |
| Msa0539690 | AT1G26260.5 | 52.632 | 76 | 34 | 1 | 106 | 181 | 192 | 265 | 4.97e-16 | 75.5 |
| Msa0539690 | AT1G26260.3 | 52.632 | 76 | 34 | 1 | 106 | 181 | 163 | 236 | 5.11e-16 | 75.1 |
| Msa0539690 | AT1G26260.4 | 52.632 | 76 | 34 | 1 | 106 | 181 | 214 | 287 | 5.50e-16 | 75.5 |
| Msa0539690 | AT1G26260.1 | 52.632 | 76 | 34 | 1 | 106 | 181 | 214 | 287 | 5.50e-16 | 75.5 |
| Msa0539690 | AT1G26260.6 | 52.632 | 76 | 34 | 1 | 106 | 181 | 214 | 287 | 5.50e-16 | 75.5 |
| Msa0539690 | AT1G26260.2 | 52.632 | 76 | 34 | 1 | 106 | 181 | 214 | 287 | 5.50e-16 | 75.5 |
| Msa0539690 | AT1G68920.3 | 55.385 | 65 | 29 | 0 | 117 | 181 | 302 | 366 | 1.66e-15 | 74.3 |
| Msa0539690 | AT1G68920.1 | 55.385 | 65 | 29 | 0 | 117 | 181 | 303 | 367 | 1.66e-15 | 74.3 |
| Msa0539690 | AT1G68920.4 | 55.385 | 65 | 29 | 0 | 117 | 181 | 303 | 367 | 1.66e-15 | 74.3 |
| Msa0539690 | AT1G68920.2 | 55.385 | 65 | 29 | 0 | 117 | 181 | 303 | 367 | 1.66e-15 | 74.3 |
| Msa0539690 | AT1G18400.2 | 53.846 | 65 | 30 | 0 | 117 | 181 | 145 | 209 | 2.24e-15 | 72.4 |
| Msa0539690 | AT1G18400.1 | 53.846 | 65 | 30 | 0 | 117 | 181 | 145 | 209 | 3.09e-15 | 72.0 |
| Msa0539690 | AT3G07340.1 | 55.385 | 65 | 29 | 0 | 117 | 181 | 258 | 322 | 3.84e-15 | 73.2 |
| Msa0539690 | AT3G07340.2 | 55.385 | 65 | 29 | 0 | 117 | 181 | 258 | 322 | 4.26e-15 | 73.2 |
| Msa0539690 | AT1G73830.2 | 53.846 | 65 | 30 | 0 | 117 | 181 | 147 | 211 | 4.50e-15 | 71.6 |
| Msa0539690 | AT1G73830.1 | 53.846 | 65 | 30 | 0 | 117 | 181 | 147 | 211 | 4.74e-15 | 71.6 |
| Msa0539690 | AT1G25330.1 | 55.385 | 65 | 29 | 0 | 117 | 181 | 104 | 168 | 9.71e-15 | 70.1 |
| Msa0539690 | AT5G48560.2 | 53.846 | 65 | 30 | 0 | 117 | 181 | 301 | 365 | 1.50e-14 | 71.6 |
| Msa0539690 | AT5G48560.1 | 53.846 | 65 | 30 | 0 | 117 | 181 | 301 | 365 | 1.60e-14 | 71.2 |
| Msa0539690 | AT2G14760.1 | 57.576 | 66 | 27 | 1 | 116 | 181 | 236 | 300 | 2.92e-14 | 70.1 |
| Msa0539690 | AT5G43175.1 | 50.000 | 72 | 35 | 1 | 112 | 183 | 127 | 197 | 3.75e-14 | 68.6 |
| Msa0539690 | AT4G33880.1 | 57.576 | 66 | 27 | 1 | 116 | 181 | 265 | 329 | 3.75e-14 | 70.1 |
| Msa0539690 | AT1G27740.1 | 52.857 | 70 | 32 | 1 | 112 | 181 | 162 | 230 | 6.93e-14 | 68.6 |
| Msa0539690 | AT3G23690.1 | 52.308 | 65 | 31 | 0 | 117 | 181 | 191 | 255 | 8.20e-14 | 68.9 |
| Msa0539690 | AT2G18300.1 | 50.769 | 65 | 32 | 0 | 117 | 181 | 185 | 249 | 1.47e-13 | 68.2 |
| Msa0539690 | AT2G18300.2 | 50.769 | 65 | 32 | 0 | 117 | 181 | 185 | 249 | 1.48e-13 | 68.2 |
| Msa0539690 | AT2G18300.3 | 50.769 | 65 | 32 | 0 | 117 | 181 | 185 | 249 | 1.53e-13 | 68.2 |
| Msa0539690 | AT2G42300.4 | 50.746 | 67 | 33 | 0 | 115 | 181 | 183 | 249 | 2.11e-13 | 67.4 |
| Msa0539690 | AT2G42300.1 | 50.746 | 67 | 33 | 0 | 115 | 181 | 183 | 249 | 2.17e-13 | 67.8 |
| Msa0539690 | AT3G57800.2 | 50.746 | 67 | 33 | 0 | 115 | 181 | 202 | 268 | 2.27e-13 | 67.8 |
| Msa0539690 | AT4G36540.2 | 50.769 | 65 | 32 | 0 | 117 | 181 | 141 | 205 | 2.51e-13 | 67.4 |
| Msa0539690 | AT4G36540.1 | 50.769 | 65 | 32 | 0 | 117 | 181 | 141 | 205 | 2.64e-13 | 67.4 |
| Msa0539690 | AT1G59640.1 | 49.231 | 65 | 33 | 0 | 117 | 181 | 136 | 200 | 4.44e-13 | 66.2 |
| Msa0539690 | AT1G59640.2 | 49.231 | 65 | 33 | 0 | 117 | 181 | 136 | 200 | 6.76e-13 | 66.2 |
| Msa0539690 | AT4G02590.3 | 58.571 | 70 | 28 | 1 | 112 | 181 | 78 | 146 | 1.23e-11 | 62.0 |
| Msa0539690 | AT4G02590.2 | 58.571 | 70 | 28 | 1 | 112 | 181 | 141 | 209 | 1.43e-11 | 62.4 |
| Msa0539690 | AT4G02590.1 | 58.571 | 70 | 28 | 1 | 112 | 181 | 141 | 209 | 1.43e-11 | 62.4 |
| Msa0539690 | AT5G62610.2 | 44.615 | 65 | 36 | 0 | 117 | 181 | 153 | 217 | 1.64e-11 | 62.0 |
| Msa0539690 | AT5G62610.1 | 44.615 | 65 | 36 | 0 | 117 | 181 | 153 | 217 | 1.64e-11 | 62.0 |
| Msa0539690 | AT1G03040.2 | 60.606 | 66 | 25 | 1 | 116 | 181 | 138 | 202 | 2.03e-11 | 62.0 |
| Msa0539690 | AT1G03040.1 | 60.606 | 66 | 25 | 1 | 116 | 181 | 143 | 207 | 2.25e-11 | 61.6 |
| Msa0539690 | AT1G03040.3 | 60.606 | 66 | 25 | 1 | 116 | 181 | 143 | 207 | 2.83e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGGATGCAACCTGTTTC+TGG | 0.121390 | 4_1:-20865105 | Msa0539690:exon |
| ACCTCTTACTATTATTTCTT+AGG | 0.143125 | 4_1:-20865123 | Msa0539690:five_prime_UTR |
| AGCTAAACCTTATCCATATT+TGG | 0.165931 | 4_1:+20863277 | None:intergenic |
| TATAGAATAACTACTATTTC+TGG | 0.214268 | 4_1:-20865207 | Msa0539690:five_prime_UTR |
| GTAAGAGGTAGTACTGTTTA+AGG | 0.248830 | 4_1:+20865137 | None:intergenic |
| TCAAGAACTTGTGCCAAATA+TGG | 0.285178 | 4_1:-20863290 | Msa0539690:CDS |
| CATAGCAATTGACCTTAAAA+TGG | 0.333387 | 4_1:-20863547 | Msa0539690:CDS |
| GAGTAATAATCAGATAAATA+TGG | 0.336738 | 4_1:+20864898 | None:intergenic |
| CTCTACAACAAATACATGTT+GGG | 0.348451 | 4_1:-20860741 | Msa0539690:three_prime_UTR |
| CCTGTTTCTGGCGGTGGTGG+TGG | 0.399011 | 4_1:-20865093 | Msa0539690:CDS |
| TCTAATAACAACGTTGCTGC+TGG | 0.406148 | 4_1:-20864949 | Msa0539690:CDS |
| CCACCACCACCGCCAGAAAC+AGG | 0.428262 | 4_1:+20865093 | None:intergenic |
| ACTTGTGCCAAATATGGATA+AGG | 0.429118 | 4_1:-20863284 | Msa0539690:intron |
| CCTCTTACTATTATTTCTTA+GGG | 0.433393 | 4_1:-20865122 | Msa0539690:five_prime_UTR |
| ATTCCTCATGAAATTGATAA+TGG | 0.436666 | 4_1:+20860713 | None:intergenic |
| GTTTCTGGCGGTGGTGGTGG+TGG | 0.448404 | 4_1:-20865090 | Msa0539690:CDS |
| ACAAACTTCACTCTGAGTTA+TGG | 0.449811 | 4_1:+20860773 | None:intergenic |
| ACTCTACAACAAATACATGT+TGG | 0.455447 | 4_1:-20860742 | Msa0539690:three_prime_UTR |
| TCCAAGGAGTATTGCTGAAA+GGG | 0.458068 | 4_1:-20863463 | Msa0539690:intron |
| ACCCTTTCAGCAATACTCCT+TGG | 0.458639 | 4_1:+20863462 | None:intergenic |
| CCCTAAGAAATAATAGTAAG+AGG | 0.463521 | 4_1:+20865122 | None:intergenic |
| ATGCAACCTGTTTCTGGCGG+TGG | 0.482597 | 4_1:-20865099 | Msa0539690:CDS |
| CAACCTGTTTCTGGCGGTGG+TGG | 0.488753 | 4_1:-20865096 | Msa0539690:CDS |
| GTGGTGGTGGTGGTTTGACA+CGG | 0.498165 | 4_1:-20865080 | Msa0539690:CDS |
| AACGGAATTATGCATTTACT+CGG | 0.513601 | 4_1:+20860847 | None:intergenic |
| TTCAAAAGAGAATATGCAAA+CGG | 0.513621 | 4_1:+20860829 | None:intergenic |
| GGATGAGACTCAGGAGTTGA+AGG | 0.519475 | 4_1:+20864919 | None:intergenic |
| GATAAATATGGATGAGACTC+AGG | 0.521953 | 4_1:+20864910 | None:intergenic |
| GTTTCTACAGAATCAAATTG+AGG | 0.522450 | 4_1:-20861021 | Msa0539690:intron |
| TTGACAGATGTAGGAGTAAG+TGG | 0.525544 | 4_1:+20864871 | None:intergenic |
| CGCTTTGCTCGAATCTTACA+CGG | 0.531001 | 4_1:+20863501 | None:intergenic |
| TTAGCAACATTGACAGATGT+AGG | 0.531316 | 4_1:+20864862 | None:intergenic |
| AACGATTCGAACCAACTCGC+TGG | 0.532231 | 4_1:+20865045 | None:intergenic |
| AAGTAAAGTACCTGAGTGAA+AGG | 0.536445 | 4_1:+20864835 | None:intergenic |
| AACAACGTTGCTGCTGGACA+TGG | 0.544808 | 4_1:-20864943 | Msa0539690:CDS |
| TCTAAGAACTCTATCTGAAG+TGG | 0.547369 | 4_1:+20860690 | None:intergenic |
| CGCAGAGATGTTAGATGAGG+CGG | 0.558021 | 4_1:-20861057 | Msa0539690:CDS |
| ATCCAAGGAGTATTGCTGAA+AGG | 0.558668 | 4_1:-20863464 | Msa0539690:CDS |
| TCTACAACAAATACATGTTG+GGG | 0.569213 | 4_1:-20860740 | Msa0539690:three_prime_UTR |
| TGCTAATAATCCTTTCACTC+AGG | 0.579907 | 4_1:-20864845 | Msa0539690:intron |
| AAGAAAACGGCGGTGGAACG+TGG | 0.593504 | 4_1:-20865274 | Msa0539690:five_prime_UTR |
| TGTAAGATTCGAGCAAAGCG+TGG | 0.594947 | 4_1:-20863498 | Msa0539690:CDS |
| TGTGTGTTTAAAGGGAGTTG+AGG | 0.598349 | 4_1:-20863577 | Msa0539690:intron |
| TTAACTCAACTCCAGCGAGT+TGG | 0.603459 | 4_1:-20865056 | Msa0539690:CDS |
| AACTATCAGAACAGCAAAGG+AGG | 0.605279 | 4_1:-20860886 | Msa0539690:CDS |
| ACGGAATTATGCATTTACTC+GGG | 0.609363 | 4_1:+20860848 | None:intergenic |
| GAAAGAAAAGAAAACGGCGG+TGG | 0.612922 | 4_1:-20865281 | None:intergenic |
| TTGTTGTTATGTAGGTTCGG+AGG | 0.614896 | 4_1:-20863342 | Msa0539690:intron |
| AGGAACTATCAGAACAGCAA+AGG | 0.616724 | 4_1:-20860889 | Msa0539690:CDS |
| GTGGATTTGCTACTCATCCA+AGG | 0.634120 | 4_1:-20863479 | Msa0539690:CDS |
| GGGATGCAACCTGTTTCTGG+CGG | 0.639831 | 4_1:-20865102 | Msa0539690:CDS |
| GTGCCATTATCAATTTCATG+AGG | 0.641751 | 4_1:-20860716 | Msa0539690:three_prime_UTR |
| CTACAACAAATACATGTTGG+GGG | 0.652944 | 4_1:-20860739 | Msa0539690:three_prime_UTR |
| TACCGCAGAGATGTTAGATG+AGG | 0.658172 | 4_1:-20861060 | Msa0539690:CDS |
| TACAACAAATACATGTTGGG+GGG | 0.663265 | 4_1:-20860738 | Msa0539690:three_prime_UTR |
| CGCCTCATCTAACATCTCTG+CGG | 0.686528 | 4_1:+20861058 | None:intergenic |
| TTAAAGGGAGTTGAGGACAG+TGG | 0.694915 | 4_1:-20863570 | Msa0539690:intron |
| TGGGAAAGAAAAGAAAACGG+CGG | 0.764417 | 4_1:-20865284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCTATACTATTTGTATT+CGG | + | chr4_1:20860568-20860587 | None:intergenic | 15.0% |
| !! | AACAAAATATCAATCAATTT+AGG | - | chr4_1:20861808-20861827 | Msa0539690:intron | 15.0% |
| !!! | AAATAGAACATTTAAAATAG+TGG | + | chr4_1:20861852-20861871 | None:intergenic | 15.0% |
| !! | ATCTATATAATATACTGATA+TGG | - | chr4_1:20862029-20862048 | Msa0539690:intron | 15.0% |
| !! | TATGTAATAAAAGAAAAGAA+AGG | + | chr4_1:20862674-20862693 | None:intergenic | 15.0% |
| !!! | AAATTTAGAAAGTACTAATT+GGG | - | chr4_1:20862901-20862920 | Msa0539690:intron | 15.0% |
| !! | TTGTTTAATATAAAATTCTG+AGG | + | chr4_1:20863067-20863086 | None:intergenic | 15.0% |
| !! | ACAACATAAATTAAATTTGA+AGG | - | chr4_1:20863714-20863733 | Msa0539690:intron | 15.0% |
| !!! | CTTTTGAATTATCATATTTT+TGG | - | chr4_1:20864972-20864991 | Msa0539690:CDS | 15.0% |
| !! | TATAGAATAACTACTATTTC+TGG | - | chr4_1:20860579-20860598 | Msa0539690:three_prime_UTR | 20.0% |
| !! | GAGTAATAATCAGATAAATA+TGG | + | chr4_1:20860891-20860910 | None:intergenic | 20.0% |
| !! | TTCAATGTAATTATATGTGT+CGG | + | chr4_1:20861122-20861141 | None:intergenic | 20.0% |
| !!! | ATTTAATTTGTATACGTCAT+TGG | - | chr4_1:20861349-20861368 | Msa0539690:intron | 20.0% |
| !!! | ATTTTTAGTAACGTTTTAGT+AGG | - | chr4_1:20861413-20861432 | Msa0539690:intron | 20.0% |
| !! | ATATTAACATGTGATTTGAT+TGG | - | chr4_1:20861453-20861472 | Msa0539690:intron | 20.0% |
| !! | ATTCTTTAGATTATAAGTGT+TGG | - | chr4_1:20861733-20861752 | Msa0539690:intron | 20.0% |
| !!! | TTCTGTATATGAATATCTTT+TGG | + | chr4_1:20861990-20862009 | None:intergenic | 20.0% |
| !! | TATATAATATACTGATATGG+AGG | - | chr4_1:20862032-20862051 | Msa0539690:intron | 20.0% |
| !!! | TTTTTGTTCTTATTGCTTAT+TGG | - | chr4_1:20862144-20862163 | Msa0539690:intron | 20.0% |
| !!! | TTTTGTTCTTATTGCTTATT+GGG | - | chr4_1:20862145-20862164 | Msa0539690:intron | 20.0% |
| !!! | TGTATTTTTGTGTGTTTAAA+GGG | - | chr4_1:20862201-20862220 | Msa0539690:intron | 20.0% |
| !!! | CTAAAATTTTGTCCATTTTA+AGG | + | chr4_1:20862254-20862273 | None:intergenic | 20.0% |
| !!! | TAAAATGGACAAAATTTTAG+AGG | - | chr4_1:20862254-20862273 | Msa0539690:intron | 20.0% |
| !!! | AAAATGGACAAAATTTTAGA+GGG | - | chr4_1:20862255-20862274 | Msa0539690:intron | 20.0% |
| !! | TCATAATGCTAATACTAATT+TGG | - | chr4_1:20862362-20862381 | Msa0539690:intron | 20.0% |
| !! | CATAATGCTAATACTAATTT+GGG | - | chr4_1:20862363-20862382 | Msa0539690:intron | 20.0% |
| !! | ATTAAACAAACATGTTATAG+TGG | + | chr4_1:20862547-20862566 | None:intergenic | 20.0% |
| !! | ACTATAACATGTTTGTTTAA+TGG | - | chr4_1:20862546-20862565 | Msa0539690:intron | 20.0% |
| !!! | CTTTTCTTTTATTACATATG+AGG | - | chr4_1:20862676-20862695 | Msa0539690:intron | 20.0% |
| !! | AATTATTGACATAATGACAT+TGG | - | chr4_1:20862868-20862887 | Msa0539690:intron | 20.0% |
| !!! | CAAATTTAGAAAGTACTAAT+TGG | - | chr4_1:20862900-20862919 | Msa0539690:intron | 20.0% |
| !!! | AATTTAGAAAGTACTAATTG+GGG | - | chr4_1:20862902-20862921 | Msa0539690:intron | 20.0% |
| !!! | CTGAATAAAAAGTATAAAAG+GGG | + | chr4_1:20863328-20863347 | None:intergenic | 20.0% |
| !!! | CCTGAATAAAAAGTATAAAA+GGG | + | chr4_1:20863329-20863348 | None:intergenic | 20.0% |
| !!! | ACCTGAATAAAAAGTATAAA+AGG | + | chr4_1:20863330-20863349 | None:intergenic | 20.0% |
| !! | TATCAAAAATCATAAATGTG+AGG | - | chr4_1:20863416-20863435 | Msa0539690:intron | 20.0% |
| !!! | AGATAAATCTTTCACATTTT+TGG | - | chr4_1:20863616-20863635 | Msa0539690:intron | 20.0% |
| !!! | GATAAATCTTTCACATTTTT+GGG | - | chr4_1:20863617-20863636 | Msa0539690:intron | 20.0% |
| !! | ACAAAAGATAAATAAAGTCA+GGG | + | chr4_1:20863999-20864018 | None:intergenic | 20.0% |
| !! | AACAAAAGATAAATAAAGTC+AGG | + | chr4_1:20864000-20864019 | None:intergenic | 20.0% |
| !!! | AAATTTTATCATCTATATGG+CGG | + | chr4_1:20865271-20865290 | None:intergenic | 20.0% |
| !!! | GCAAAATTTTATCATCTATA+TGG | + | chr4_1:20865274-20865293 | None:intergenic | 20.0% |
| !! | ACCTCTTACTATTATTTCTT+AGG | - | chr4_1:20860663-20860682 | Msa0539690:three_prime_UTR | 25.0% |
| !! | CCTCTTACTATTATTTCTTA+GGG | - | chr4_1:20860664-20860683 | Msa0539690:three_prime_UTR | 25.0% |
| ! | ATAGATAAATCAAGCAAATC+CGG | + | chr4_1:20861002-20861021 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTAACGATGT+CGG | - | chr4_1:20861153-20861172 | Msa0539690:intron | 25.0% |
| ! | TATCTACATGCTGATATATA+TGG | + | chr4_1:20861394-20861413 | None:intergenic | 25.0% |
| ! | AAAACTATGTTATACACACT+GGG | + | chr4_1:20861652-20861671 | None:intergenic | 25.0% |
| ! | TAAAACTATGTTATACACAC+TGG | + | chr4_1:20861653-20861672 | None:intergenic | 25.0% |
| !!! | AACATAGTTTTACAACTGTT+AGG | - | chr4_1:20861661-20861680 | Msa0539690:intron | 25.0% |
| ! | TTCATATACAGAAAGATGAT+AGG | - | chr4_1:20861997-20862016 | Msa0539690:intron | 25.0% |
| ! | TACTTAGTGAGAAAATACTT+TGG | - | chr4_1:20862121-20862140 | Msa0539690:intron | 25.0% |
| !!! | CTGTATTTTTGTGTGTTTAA+AGG | - | chr4_1:20862200-20862219 | Msa0539690:intron | 25.0% |
| ! | ACTTGAACAAAATCATTTCT+GGG | + | chr4_1:20862581-20862600 | None:intergenic | 25.0% |
| ! | AACTTGAACAAAATCATTTC+TGG | + | chr4_1:20862582-20862601 | None:intergenic | 25.0% |
| ! | ACTTCAAATTCAAAGAGAAA+GGG | + | chr4_1:20862847-20862866 | None:intergenic | 25.0% |
| ! | AACTTCAAATTCAAAGAGAA+AGG | + | chr4_1:20862848-20862867 | None:intergenic | 25.0% |
| !! | TTTGAGTAAAGGAACTTTTA+AGG | + | chr4_1:20862940-20862959 | None:intergenic | 25.0% |
| !!! | CCCTTTTATACTTTTTATTC+AGG | - | chr4_1:20863326-20863345 | Msa0539690:CDS | 25.0% |
| ! | TTGATATCTCTCAATCATTA+AGG | + | chr4_1:20863402-20863421 | None:intergenic | 25.0% |
| ! | ATACAAAATCATCCTCATTT+GGG | + | chr4_1:20863799-20863818 | None:intergenic | 25.0% |
| ! | AATACAAAATCATCCTCATT+TGG | + | chr4_1:20863800-20863819 | None:intergenic | 25.0% |
| ! | TGAAAGAAATAGAGAACATT+GGG | + | chr4_1:20863856-20863875 | None:intergenic | 25.0% |
| ! | TGGATACAATGTAACTAATA+TGG | - | chr4_1:20863948-20863967 | Msa0539690:intron | 25.0% |
| ! | CAAAAGATAAATAAAGTCAG+GGG | + | chr4_1:20863998-20864017 | None:intergenic | 25.0% |
| ! | GACACTATTAATTTCTTCTT+TGG | - | chr4_1:20864311-20864330 | Msa0539690:intron | 25.0% |
| ! | ACTATTAATTTCTTCTTTGG+CGG | - | chr4_1:20864314-20864333 | Msa0539690:intron | 25.0% |
| ! | GCATTTCTCTATCAAAATAT+AGG | - | chr4_1:20864414-20864433 | Msa0539690:intron | 25.0% |
| ! | TTTCTCTATCAAAATATAGG+AGG | - | chr4_1:20864417-20864436 | Msa0539690:intron | 25.0% |
| ! | TATCAAAATATAGGAGGATA+GGG | - | chr4_1:20864423-20864442 | Msa0539690:intron | 25.0% |
| !! | TTCATTTTCTCTCTTAATTG+CGG | - | chr4_1:20864669-20864688 | Msa0539690:intron | 25.0% |
| ! | TACAAGAACAAAAGAAACTT+AGG | + | chr4_1:20864697-20864716 | None:intergenic | 25.0% |
| ! | CTAAATTTATGCTTGTCATT+TGG | - | chr4_1:20864805-20864824 | Msa0539690:intron | 25.0% |
| ! | TGCATGAATTGATACATTAT+AGG | - | chr4_1:20864877-20864896 | Msa0539690:CDS | 25.0% |
| ! | TTCAAAAGAGAATATGCAAA+CGG | + | chr4_1:20864960-20864979 | None:intergenic | 25.0% |
| ! | ATTCCTCATGAAATTGATAA+TGG | + | chr4_1:20865076-20865095 | None:intergenic | 25.0% |
| CCCTAAGAAATAATAGTAAG+AGG | + | chr4_1:20860667-20860686 | None:intergenic | 30.0% | |
| AATACACAATACGGACAATA+CGG | + | chr4_1:20861190-20861209 | None:intergenic | 30.0% | |
| ATCGAATACATTCAAGTCTT+CGG | - | chr4_1:20861548-20861567 | Msa0539690:intron | 30.0% | |
| GAGTATAACAGAACATAATG+AGG | - | chr4_1:20862076-20862095 | Msa0539690:intron | 30.0% | |
| CATAGCAATTGACCTTAAAA+TGG | - | chr4_1:20862239-20862258 | Msa0539690:intron | 30.0% | |
| TCATTTGCCTAATCCAAATT+GGG | - | chr4_1:20862396-20862415 | Msa0539690:intron | 30.0% | |
| !! | TGAGTTTCTTGTTGTTATGT+AGG | - | chr4_1:20862436-20862455 | Msa0539690:intron | 30.0% |
| !! | TTCTTGTTGTTATGTAGGTT+CGG | - | chr4_1:20862441-20862460 | Msa0539690:intron | 30.0% |
| AGCTAAACCTTATCCATATT+TGG | + | chr4_1:20862512-20862531 | None:intergenic | 30.0% | |
| AAGGTACAAAGCATAATGTA+TGG | + | chr4_1:20862613-20862632 | None:intergenic | 30.0% | |
| !!! | GGTTTTGAGTGAAATTTACT+TGG | - | chr4_1:20862697-20862716 | Msa0539690:intron | 30.0% |
| ! | TGACATAATGACATTGGTTA+AGG | - | chr4_1:20862874-20862893 | Msa0539690:intron | 30.0% |
| !!! | AACTTGCTAGTTTTGAGTAA+AGG | + | chr4_1:20862951-20862970 | None:intergenic | 30.0% |
| TTTACTCAAAACTAGCAAGT+TGG | - | chr4_1:20862950-20862969 | Msa0539690:intron | 30.0% | |
| TTACTCAAAACTAGCAAGTT+GGG | - | chr4_1:20862951-20862970 | Msa0539690:intron | 30.0% | |
| !! | AAAATTCTGAGGTTCAAATC+TGG | + | chr4_1:20863056-20863075 | None:intergenic | 30.0% |
| ! | GTATACATTCTGGCATTTTT+CGG | + | chr4_1:20863261-20863280 | None:intergenic | 30.0% |
| TAAATTCAGCGTATACATTC+TGG | + | chr4_1:20863271-20863290 | None:intergenic | 30.0% | |
| CTAAGGATTTGTAGTTAAGT+TGG | + | chr4_1:20863297-20863316 | None:intergenic | 30.0% | |
| CAACTTAACTACAAATCCTT+AGG | - | chr4_1:20863295-20863314 | Msa0539690:CDS | 30.0% | |
| TAAAAGGGGATTAAAACCTA+AGG | + | chr4_1:20863314-20863333 | None:intergenic | 30.0% | |
| AAAGTCCAAACATGATGTTT+GGG | + | chr4_1:20863471-20863490 | None:intergenic | 30.0% | |
| AAAAGTCCAAACATGATGTT+TGG | + | chr4_1:20863472-20863491 | None:intergenic | 30.0% | |
| ! | AACATCATGTTTGGACTTTT+TGG | - | chr4_1:20863472-20863491 | Msa0539690:CDS | 30.0% |
| !! | TACAATCTTAGGCTTTGTTT+GGG | - | chr4_1:20863537-20863556 | Msa0539690:CDS | 30.0% |
| TTTGGAAGGTGAGAAATATA+GGG | - | chr4_1:20863587-20863606 | Msa0539690:intron | 30.0% | |
| TCAAAAATTGTATTGGAGGA+GGG | + | chr4_1:20863771-20863790 | None:intergenic | 30.0% | |
| GAACTCAAAAATTGTATTGG+AGG | + | chr4_1:20863775-20863794 | None:intergenic | 30.0% | |
| GGAGAACTCAAAAATTGTAT+TGG | + | chr4_1:20863778-20863797 | None:intergenic | 30.0% | |
| GTGAAAGAAATAGAGAACAT+TGG | + | chr4_1:20863857-20863876 | None:intergenic | 30.0% | |
| !! | TAATGCTTTGTTTGTGAGTT+TGG | + | chr4_1:20863922-20863941 | None:intergenic | 30.0% |
| ! | AACTCACAAACAAAGCATTA+AGG | - | chr4_1:20863922-20863941 | Msa0539690:intron | 30.0% |
| TCATGTCTTTCGTTTCTAAA+AGG | + | chr4_1:20864261-20864280 | None:intergenic | 30.0% | |
| CTATCAAAATATAGGAGGAT+AGG | - | chr4_1:20864422-20864441 | Msa0539690:intron | 30.0% | |
| TGACCAATTCTGTTATAAGT+GGG | - | chr4_1:20864487-20864506 | Msa0539690:intron | 30.0% | |
| GTTTCTACAGAATCAAATTG+AGG | - | chr4_1:20864765-20864784 | Msa0539690:intron | 30.0% | |
| ! | TATGCTTGTCATTTGGTATT+CGG | - | chr4_1:20864812-20864831 | Msa0539690:intron | 30.0% |
| AACGGAATTATGCATTTACT+CGG | + | chr4_1:20864942-20864961 | None:intergenic | 30.0% | |
| ACTCTACAACAAATACATGT+TGG | - | chr4_1:20865044-20865063 | Msa0539690:CDS | 30.0% | |
| CTCTACAACAAATACATGTT+GGG | - | chr4_1:20865045-20865064 | Msa0539690:CDS | 30.0% | |
| TCTACAACAAATACATGTTG+GGG | - | chr4_1:20865046-20865065 | Msa0539690:CDS | 30.0% | |
| GTAAGAGGTAGTACTGTTTA+AGG | + | chr4_1:20860652-20860671 | None:intergenic | 35.0% | |
| GATAAATATGGATGAGACTC+AGG | + | chr4_1:20860879-20860898 | None:intergenic | 35.0% | |
| TTAGCAACATTGACAGATGT+AGG | + | chr4_1:20860927-20860946 | None:intergenic | 35.0% | |
| TGCTAATAATCCTTTCACTC+AGG | - | chr4_1:20860941-20860960 | Msa0539690:intron | 35.0% | |
| ! | AAGTAAAGTACCTGAGTGAA+AGG | + | chr4_1:20860954-20860973 | None:intergenic | 35.0% |
| TTATTCTTGAGTCCTGAATC+CGG | - | chr4_1:20860980-20860999 | Msa0539690:intron | 35.0% | |
| TACGAAACACGAACACTTAT+CGG | - | chr4_1:20861055-20861074 | Msa0539690:CDS | 35.0% | |
| CACTTATTAAATGGCAAACG+GGG | + | chr4_1:20861219-20861238 | None:intergenic | 35.0% | |
| CCACTTATTAAATGGCAAAC+GGG | + | chr4_1:20861220-20861239 | None:intergenic | 35.0% | |
| CCCACTTATTAAATGGCAAA+CGG | + | chr4_1:20861221-20861240 | None:intergenic | 35.0% | |
| ! | CCGTTTGCCATTTAATAAGT+GGG | - | chr4_1:20861218-20861237 | Msa0539690:intron | 35.0% |
| ! | CGTTTGCCATTTAATAAGTG+GGG | - | chr4_1:20861219-20861238 | Msa0539690:intron | 35.0% |
| GTTAGAAGCCCAATATTAGA+TGG | - | chr4_1:20861506-20861525 | Msa0539690:intron | 35.0% | |
| CTCTCTCTCCATCTAATATT+GGG | + | chr4_1:20861517-20861536 | None:intergenic | 35.0% | |
| TCTCTCTCTCCATCTAATAT+TGG | + | chr4_1:20861518-20861537 | None:intergenic | 35.0% | |
| AATATTAGATGGAGAGAGAG+AGG | - | chr4_1:20861517-20861536 | Msa0539690:intron | 35.0% | |
| ACACCTTAGAATCACTTGTA+AGG | - | chr4_1:20861951-20861970 | Msa0539690:intron | 35.0% | |
| !! | GAGGTGTTATTATAGTGACA+TGG | - | chr4_1:20862051-20862070 | Msa0539690:intron | 35.0% |
| ! | GTGTTATTATAGTGACATGG+AGG | - | chr4_1:20862054-20862073 | Msa0539690:intron | 35.0% |
| GTCATTTGCCTAATCCAAAT+TGG | - | chr4_1:20862395-20862414 | Msa0539690:intron | 35.0% | |
| AAGTTCACCCAATTTGGATT+AGG | + | chr4_1:20862406-20862425 | None:intergenic | 35.0% | |
| CAGAAAAAGTTCACCCAATT+TGG | + | chr4_1:20862412-20862431 | None:intergenic | 35.0% | |
| TCAAGAACTTGTGCCAAATA+TGG | - | chr4_1:20862496-20862515 | Msa0539690:intron | 35.0% | |
| ACTTGTGCCAAATATGGATA+AGG | - | chr4_1:20862502-20862521 | Msa0539690:intron | 35.0% | |
| !! | TCATCTTGCTTGCTGTTAAA+AGG | + | chr4_1:20862632-20862651 | None:intergenic | 35.0% |
| ! | CGTGTGTTGTGTTTTATGAT+CGG | - | chr4_1:20862759-20862778 | Msa0539690:intron | 35.0% |
| AAAGAGAAAGGGTAGTTAAG+TGG | + | chr4_1:20862836-20862855 | None:intergenic | 35.0% | |
| ! | TTTTCAACTACACAGAAACC+TGG | + | chr4_1:20862978-20862997 | None:intergenic | 35.0% |
| TGAACTGTCTGATTCTGATT+GGG | - | chr4_1:20863109-20863128 | Msa0539690:intron | 35.0% | |
| CATTAAGGTTACTGCAAAAG+TGG | + | chr4_1:20863387-20863406 | None:intergenic | 35.0% | |
| ACATGATGTTTGGGCAAAAA+CGG | + | chr4_1:20863462-20863481 | None:intergenic | 35.0% | |
| ! | TTTTGCCCAAACATCATGTT+TGG | - | chr4_1:20863463-20863482 | Msa0539690:intron | 35.0% |
| ! | TCATGTTTGGACTTTTTGGA+AGG | - | chr4_1:20863476-20863495 | Msa0539690:CDS | 35.0% |
| TATGTAAACACAGACACACT+TGG | - | chr4_1:20863512-20863531 | Msa0539690:CDS | 35.0% | |
| !! | CTACAATCTTAGGCTTTGTT+TGG | - | chr4_1:20863536-20863555 | Msa0539690:CDS | 35.0% |
| ! | CTTTGGAAGGTGAGAAATAT+AGG | - | chr4_1:20863586-20863605 | Msa0539690:intron | 35.0% |
| TTGGAAGGTGAGAAATATAG+GGG | - | chr4_1:20863588-20863607 | Msa0539690:intron | 35.0% | |
| CTCAAAAATTGTATTGGAGG+AGG | + | chr4_1:20863772-20863791 | None:intergenic | 35.0% | |
| !!! | TTTTTGAGTTCTCCCAAATG+AGG | - | chr4_1:20863784-20863803 | Msa0539690:intron | 35.0% |
| AGAAATAGAGAACATTGGGA+GGG | + | chr4_1:20863852-20863871 | None:intergenic | 35.0% | |
| AAGAAATAGAGAACATTGGG+AGG | + | chr4_1:20863853-20863872 | None:intergenic | 35.0% | |
| ! | CAAACAAAGCATTAAGGTAG+TGG | - | chr4_1:20863928-20863947 | Msa0539690:intron | 35.0% |
| AGGATCTCAAATGAGAATGT+AGG | - | chr4_1:20864148-20864167 | Msa0539690:intron | 35.0% | |
| TAGTTAGCCAATTTACCACT+GGG | + | chr4_1:20864174-20864193 | None:intergenic | 35.0% | |
| GTGACCAATTCTGTTATAAG+TGG | - | chr4_1:20864486-20864505 | Msa0539690:intron | 35.0% | |
| TCTCCCACTTATAACAGAAT+TGG | + | chr4_1:20864493-20864512 | None:intergenic | 35.0% | |
| ! | TTTTGCAGTTAGTAACCGTT+TGG | - | chr4_1:20864545-20864564 | Msa0539690:intron | 35.0% |
| TTTGCAGTTAGTAACCGTTT+GGG | - | chr4_1:20864546-20864565 | Msa0539690:intron | 35.0% | |
| ! | CATTTGATCTGGGATTACAT+GGG | - | chr4_1:20864604-20864623 | Msa0539690:intron | 35.0% |
| ACGGAATTATGCATTTACTC+GGG | + | chr4_1:20864941-20864960 | None:intergenic | 35.0% | |
| ACAAACTTCACTCTGAGTTA+TGG | + | chr4_1:20865016-20865035 | None:intergenic | 35.0% | |
| CTACAACAAATACATGTTGG+GGG | - | chr4_1:20865047-20865066 | Msa0539690:CDS | 35.0% | |
| TACAACAAATACATGTTGGG+GGG | - | chr4_1:20865048-20865067 | Msa0539690:CDS | 35.0% | |
| ! | GTGCCATTATCAATTTCATG+AGG | - | chr4_1:20865070-20865089 | Msa0539690:CDS | 35.0% |
| TCTAAGAACTCTATCTGAAG+TGG | + | chr4_1:20865099-20865118 | None:intergenic | 35.0% | |
| TCTAATAACAACGTTGCTGC+TGG | - | chr4_1:20860837-20860856 | Msa0539690:three_prime_UTR | 40.0% | |
| TTGACAGATGTAGGAGTAAG+TGG | + | chr4_1:20860918-20860937 | None:intergenic | 40.0% | |
| AATCAAGCAAATCCGGATTC+AGG | + | chr4_1:20860995-20861014 | None:intergenic | 40.0% | |
| GGGTCTCACAATACACAATA+CGG | + | chr4_1:20861199-20861218 | None:intergenic | 40.0% | |
| ! | CCCGTTTGCCATTTAATAAG+TGG | - | chr4_1:20861217-20861236 | Msa0539690:intron | 40.0% |
| GCAAGACCCCACTTATTAAA+TGG | + | chr4_1:20861228-20861247 | None:intergenic | 40.0% | |
| ATTCGACACACCAACAACAT+GGG | + | chr4_1:20861482-20861501 | None:intergenic | 40.0% | |
| GATGTGATGTCCAATTCACT+TGG | - | chr4_1:20861575-20861594 | Msa0539690:intron | 40.0% | |
| TCAGAAGCAACCAAGTGAAT+TGG | + | chr4_1:20861588-20861607 | None:intergenic | 40.0% | |
| GAGGGTAGCTTAAGAATCAT+GGG | + | chr4_1:20861618-20861637 | None:intergenic | 40.0% | |
| TGAGGGTAGCTTAAGAATCA+TGG | + | chr4_1:20861619-20861638 | None:intergenic | 40.0% | |
| CCTCCTTACAAGTGATTCTA+AGG | + | chr4_1:20861957-20861976 | None:intergenic | 40.0% | |
| CCTTAGAATCACTTGTAAGG+AGG | - | chr4_1:20861954-20861973 | Msa0539690:intron | 40.0% | |
| TGTGTGTTTAAAGGGAGTTG+AGG | - | chr4_1:20862209-20862228 | Msa0539690:intron | 40.0% | |
| !! | ATCCAAGGAGTATTGCTGAA+AGG | - | chr4_1:20862322-20862341 | Msa0539690:intron | 40.0% |
| !! | TCCAAGGAGTATTGCTGAAA+GGG | - | chr4_1:20862323-20862342 | Msa0539690:intron | 40.0% |
| ! | TTGTTGTTATGTAGGTTCGG+AGG | - | chr4_1:20862444-20862463 | Msa0539690:intron | 40.0% |
| CTGAACTGTCTGATTCTGAT+TGG | - | chr4_1:20863108-20863127 | Msa0539690:intron | 40.0% | |
| CAATATCAACTTGGCGGAAT+TGG | + | chr4_1:20863181-20863200 | None:intergenic | 40.0% | |
| CACACACAATATCAACTTGG+CGG | + | chr4_1:20863187-20863206 | None:intergenic | 40.0% | |
| GTCCACACACAATATCAACT+TGG | + | chr4_1:20863190-20863209 | None:intergenic | 40.0% | |
| ! | TTGATATTGTGTGTGGACTG+TGG | - | chr4_1:20863192-20863211 | Msa0539690:intron | 40.0% |
| AAACGGAGACATATCAGACA+AGG | + | chr4_1:20863445-20863464 | None:intergenic | 40.0% | |
| CACACTTGGACTACAATCTT+AGG | - | chr4_1:20863526-20863545 | Msa0539690:CDS | 40.0% | |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | - | chr4_1:20863544-20863563 | Msa0539690:CDS | 40.0% |
| !! | TTGTATTGGAGGAGGGTATT+GGG | + | chr4_1:20863764-20863783 | None:intergenic | 40.0% |
| ! | ATTGTATTGGAGGAGGGTAT+TGG | + | chr4_1:20863765-20863784 | None:intergenic | 40.0% |
| GAAATAGAGAACATTGGGAG+GGG | + | chr4_1:20863851-20863870 | None:intergenic | 40.0% | |
| ! | CTTTGTTTGTGAGTTTGGAG+GGG | + | chr4_1:20863917-20863936 | None:intergenic | 40.0% |
| !! | GCTTTGTTTGTGAGTTTGGA+GGG | + | chr4_1:20863918-20863937 | None:intergenic | 40.0% |
| !! | TGCTTTGTTTGTGAGTTTGG+AGG | + | chr4_1:20863919-20863938 | None:intergenic | 40.0% |
| GTAAGTTATGCTGTTCGATG+TGG | - | chr4_1:20864114-20864133 | Msa0539690:intron | 40.0% | |
| CTAGTTAGCCAATTTACCAC+TGG | + | chr4_1:20864175-20864194 | None:intergenic | 40.0% | |
| ACTAGTTGCACAAGTCCATT+AGG | - | chr4_1:20864190-20864209 | Msa0539690:intron | 40.0% | |
| TAACATCACTCTCCACCTAA+TGG | + | chr4_1:20864208-20864227 | None:intergenic | 40.0% | |
| ! | CGAGTCATGCTATTTGTTAC+AGG | - | chr4_1:20864234-20864253 | Msa0539690:intron | 40.0% |
| TTCTTCTTTGGCGGAATTCA+CGG | - | chr4_1:20864323-20864342 | Msa0539690:intron | 40.0% | |
| GTATGCGATACTTGTGTTGA+CGG | - | chr4_1:20864377-20864396 | Msa0539690:intron | 40.0% | |
| GGATAGGGAATAATATGTCG+TGG | - | chr4_1:20864438-20864457 | Msa0539690:intron | 40.0% | |
| AGGGAATAATATGTCGTGGT+AGG | - | chr4_1:20864442-20864461 | Msa0539690:intron | 40.0% | |
| GGGAATAATATGTCGTGGTA+GGG | - | chr4_1:20864443-20864462 | Msa0539690:intron | 40.0% | |
| TCTGTTATAAGTGGGAGAAC+AGG | - | chr4_1:20864495-20864514 | Msa0539690:intron | 40.0% | |
| ! | AGTTAGTAACCGTTTGGGTT+GGG | - | chr4_1:20864551-20864570 | Msa0539690:intron | 40.0% |
| ! | GCATTTGATCTGGGATTACA+TGG | - | chr4_1:20864603-20864622 | Msa0539690:intron | 40.0% |
| AGGAACTATCAGAACAGCAA+AGG | - | chr4_1:20864897-20864916 | Msa0539690:CDS | 40.0% | |
| AACTATCAGAACAGCAAAGG+AGG | - | chr4_1:20864900-20864919 | Msa0539690:CDS | 40.0% | |
| ! | TTCGGTGTGCTGTTATGCTT+TGG | + | chr4_1:20860550-20860569 | None:intergenic | 45.0% |
| TTAGGGATGCAACCTGTTTC+TGG | - | chr4_1:20860681-20860700 | Msa0539690:three_prime_UTR | 45.0% | |
| TTAACTCAACTCCAGCGAGT+TGG | - | chr4_1:20860730-20860749 | Msa0539690:three_prime_UTR | 45.0% | |
| ACACAACGCATGTCTGATAC+CGG | + | chr4_1:20861093-20861112 | None:intergenic | 45.0% | |
| TGATTGGATGCCCATGTTGT+TGG | - | chr4_1:20861469-20861488 | Msa0539690:intron | 45.0% | |
| CATTCGACACACCAACAACA+TGG | + | chr4_1:20861483-20861502 | None:intergenic | 45.0% | |
| TTAAAGGGAGTTGAGGACAG+TGG | - | chr4_1:20862216-20862235 | Msa0539690:intron | 45.0% | |
| CGCTTTGCTCGAATCTTACA+CGG | + | chr4_1:20862288-20862307 | None:intergenic | 45.0% | |
| TGTAAGATTCGAGCAAAGCG+TGG | - | chr4_1:20862288-20862307 | Msa0539690:intron | 45.0% | |
| !! | GTGGATTTGCTACTCATCCA+AGG | - | chr4_1:20862307-20862326 | Msa0539690:intron | 45.0% |
| ACCCTTTCAGCAATACTCCT+TGG | + | chr4_1:20862327-20862346 | None:intergenic | 45.0% | |
| ! | AAAACTAGCAAGTTGGGACC+AGG | - | chr4_1:20862957-20862976 | Msa0539690:intron | 45.0% |
| AGGTTCAAATCTGGACCATG+TGG | + | chr4_1:20863047-20863066 | None:intergenic | 45.0% | |
| ACTGTCTGATTCTGATTGGG+CGG | - | chr4_1:20863112-20863131 | Msa0539690:intron | 45.0% | |
| CAACTTGGCGGAATTGGATT+AGG | + | chr4_1:20863175-20863194 | None:intergenic | 45.0% | |
| !! | CGCCAAGTTGATATTGTGTG+TGG | - | chr4_1:20863185-20863204 | Msa0539690:intron | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr4_1:20863548-20863567 | Msa0539690:CDS | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr4_1:20863549-20863568 | Msa0539690:CDS | 45.0% |
| !! | TGTATTGGAGGAGGGTATTG+GGG | + | chr4_1:20863763-20863782 | None:intergenic | 45.0% |
| !! | AGGGGAGAGCTTTGGAATAA+AGG | + | chr4_1:20863889-20863908 | None:intergenic | 45.0% |
| TTTGTGAGTTTGGAGGGGAA+GGG | + | chr4_1:20863912-20863931 | None:intergenic | 45.0% | |
| AAATGAGAATGTAGGCCCAG+TGG | - | chr4_1:20864156-20864175 | Msa0539690:intron | 45.0% | |
| ATGTAGGCCCAGTGGTAAAT+TGG | - | chr4_1:20864164-20864183 | Msa0539690:intron | 45.0% | |
| AGTTGCACAAGTCCATTAGG+TGG | - | chr4_1:20864193-20864212 | Msa0539690:intron | 45.0% | |
| TCTTCTTTGGCGGAATTCAC+GGG | - | chr4_1:20864324-20864343 | Msa0539690:intron | 45.0% | |
| CAGTTAGTAACCGTTTGGGT+TGG | - | chr4_1:20864550-20864569 | Msa0539690:intron | 45.0% | |
| AGTGTTTCATCTCTTCTGCG+AGG | - | chr4_1:20864579-20864598 | Msa0539690:intron | 45.0% | |
| TACCGCAGAGATGTTAGATG+AGG | - | chr4_1:20864726-20864745 | Msa0539690:intron | 45.0% | |
| AACGATTCGAACCAACTCGC+TGG | + | chr4_1:20860744-20860763 | None:intergenic | 50.0% | |
| AACAACGTTGCTGCTGGACA+TGG | - | chr4_1:20860843-20860862 | Msa0539690:exon | 50.0% | |
| GGATGAGACTCAGGAGTTGA+AGG | + | chr4_1:20860870-20860889 | None:intergenic | 50.0% | |
| !! | TTATCGGATTAGCCGTGTCC+CGG | - | chr4_1:20861071-20861090 | Msa0539690:CDS | 50.0% |
| CACAACGCATGTCTGATACC+GGG | + | chr4_1:20861092-20861111 | None:intergenic | 50.0% | |
| CACTGGGACATGACTCATGA+GGG | + | chr4_1:20861636-20861655 | None:intergenic | 50.0% | |
| ACACTGGGACATGACTCATG+AGG | + | chr4_1:20861637-20861656 | None:intergenic | 50.0% | |
| ! | ACCATGTGGTCTTGATCGGA+CGG | + | chr4_1:20863033-20863052 | None:intergenic | 50.0% |
| ! | CTGGACCATGTGGTCTTGAT+CGG | + | chr4_1:20863037-20863056 | None:intergenic | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr4_1:20863547-20863566 | Msa0539690:CDS | 50.0% |
| !! | TATTGGAGGAGGGTATTGGG+GGG | + | chr4_1:20863761-20863780 | None:intergenic | 50.0% |
| !! | GTATTGGAGGAGGGTATTGG+GGG | + | chr4_1:20863762-20863781 | None:intergenic | 50.0% |
| TAGAGAACATTGGGAGGGGA+GGG | + | chr4_1:20863847-20863866 | None:intergenic | 50.0% | |
| ATAGAGAACATTGGGAGGGG+AGG | + | chr4_1:20863848-20863867 | None:intergenic | 50.0% | |
| GTTTGTGAGTTTGGAGGGGA+AGG | + | chr4_1:20863913-20863932 | None:intergenic | 50.0% | |
| TCGATGTGGCAGTGTCTGTT+AGG | - | chr4_1:20864128-20864147 | Msa0539690:intron | 50.0% | |
| ! | GGCTTAGTGGGTGTAAAGAG+CGG | - | chr4_1:20864345-20864364 | Msa0539690:intron | 50.0% |
| TAAGTGGGAGAACAGGAGAG+AGG | - | chr4_1:20864502-20864521 | Msa0539690:intron | 50.0% | |
| AAGTGGGAGAACAGGAGAGA+GGG | - | chr4_1:20864503-20864522 | Msa0539690:intron | 50.0% | |
| !! | TCTGCGAGGAGCATTTGATC+TGG | - | chr4_1:20864593-20864612 | Msa0539690:intron | 50.0% |
| !! | CTGCGAGGAGCATTTGATCT+GGG | - | chr4_1:20864594-20864613 | Msa0539690:intron | 50.0% |
| CGCCTCATCTAACATCTCTG+CGG | + | chr4_1:20864731-20864750 | None:intergenic | 50.0% | |
| CGCAGAGATGTTAGATGAGG+CGG | - | chr4_1:20864729-20864748 | Msa0539690:intron | 50.0% | |
| !! | GGGATGCAACCTGTTTCTGG+CGG | - | chr4_1:20860684-20860703 | Msa0539690:three_prime_UTR | 55.0% |
| !! | ATGCAACCTGTTTCTGGCGG+TGG | - | chr4_1:20860687-20860706 | Msa0539690:three_prime_UTR | 55.0% |
| !! | GTGGTGGTGGTGGTTTGACA+CGG | - | chr4_1:20860706-20860725 | Msa0539690:three_prime_UTR | 55.0% |
| GCATGTCTGATACCGGGACA+CGG | + | chr4_1:20861086-20861105 | None:intergenic | 55.0% | |
| CTGTGCAGTCAGCATGCTCA+AGG | - | chr4_1:20863007-20863026 | Msa0539690:intron | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | - | chr4_1:20863552-20863571 | Msa0539690:CDS | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | - | chr4_1:20863553-20863572 | Msa0539690:CDS | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | - | chr4_1:20863554-20863573 | Msa0539690:CDS | 55.0% | |
| !!! | GGGTATTGGGGGGTTTTGGA+GGG | + | chr4_1:20863751-20863770 | None:intergenic | 55.0% |
| !!! | AGGGTATTGGGGGGTTTTGG+AGG | + | chr4_1:20863752-20863771 | None:intergenic | 55.0% |
| !!! | AGGAGGGTATTGGGGGGTTT+TGG | + | chr4_1:20863755-20863774 | None:intergenic | 55.0% |
| TGAGTTTGGAGGGGAAGGGA+GGG | + | chr4_1:20863908-20863927 | None:intergenic | 55.0% | |
| GCGGAATTCACGGGCTTAGT+GGG | - | chr4_1:20864333-20864352 | Msa0539690:intron | 55.0% | |
| ATATGTCGTGGTAGGGAGCG+AGG | - | chr4_1:20864450-20864469 | Msa0539690:intron | 55.0% | |
| TATGTCGTGGTAGGGAGCGA+GGG | - | chr4_1:20864451-20864470 | Msa0539690:intron | 55.0% | |
| GGAGAACAGGAGAGAGGGAA+GGG | - | chr4_1:20864508-20864527 | Msa0539690:intron | 55.0% | |
| AACAGGAGAGAGGGAAGGGA+GGG | - | chr4_1:20864512-20864531 | Msa0539690:intron | 55.0% | |
| CACTCTCTGCCCAACCCAAA+CGG | + | chr4_1:20864563-20864582 | None:intergenic | 55.0% | |
| !! | CAACCTGTTTCTGGCGGTGG+TGG | - | chr4_1:20860690-20860709 | Msa0539690:three_prime_UTR | 60.0% |
| GCCGTCCGATCAAGACCACA+TGG | - | chr4_1:20863029-20863048 | Msa0539690:intron | 60.0% | |
| GAGTTTGGAGGGGAGGGGAA+GGG | - | chr4_1:20863559-20863578 | Msa0539690:CDS | 60.0% | |
| CATTGGGAGGGGAGGGCTTT+GGG | + | chr4_1:20863840-20863859 | None:intergenic | 60.0% | |
| ACATTGGGAGGGGAGGGCTT+TGG | + | chr4_1:20863841-20863860 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | + | chr4_1:20863907-20863926 | None:intergenic | 60.0% | |
| GTGAGTTTGGAGGGGAAGGG+AGG | + | chr4_1:20863909-20863928 | None:intergenic | 60.0% | |
| GGCGGAATTCACGGGCTTAG+TGG | - | chr4_1:20864332-20864351 | Msa0539690:intron | 60.0% | |
| AGGGAGCGAGGGTGAGCAAA+TGG | - | chr4_1:20864462-20864481 | Msa0539690:intron | 60.0% | |
| GGGAGAACAGGAGAGAGGGA+AGG | - | chr4_1:20864507-20864526 | Msa0539690:intron | 60.0% | |
| GAACAGGAGAGAGGGAAGGG+AGG | - | chr4_1:20864511-20864530 | Msa0539690:intron | 60.0% | |
| ! | AGAGAGGGAAGGGAGGGCAT+TGG | - | chr4_1:20864518-20864537 | Msa0539690:intron | 60.0% |
| CCACCACCACCGCCAGAAAC+AGG | + | chr4_1:20860696-20860715 | None:intergenic | 65.0% | |
| !! | CCTGTTTCTGGCGGTGGTGG+TGG | - | chr4_1:20860693-20860712 | Msa0539690:three_prime_UTR | 65.0% |
| !! | GTTTCTGGCGGTGGTGGTGG+TGG | - | chr4_1:20860696-20860715 | Msa0539690:three_prime_UTR | 65.0% |
| GGAGTTTGGAGGGGAGGGGA+AGG | - | chr4_1:20863558-20863577 | Msa0539690:CDS | 65.0% | |
| TTTGGAGGGGAGGGGAAGGG+AGG | - | chr4_1:20863562-20863581 | Msa0539690:CDS | 65.0% | |
| TTGGAGGGGAGGGGAAGGGA+GGG | - | chr4_1:20863563-20863582 | Msa0539690:CDS | 65.0% | |
| !! | GGGGAAGGGAGGGCTTTGGA+AGG | - | chr4_1:20863573-20863592 | Msa0539690:intron | 65.0% |
| GGGAAGGGAGGGGAGAGCTT+TGG | + | chr4_1:20863897-20863916 | None:intergenic | 65.0% | |
| GGGAGGGGAAGGGAGGGCTT+TGG | - | chr4_1:20863569-20863588 | Msa0539690:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20860515 | 20865293 | 20860515 | ID=Msa0539690;Name=Msa0539690 |
| chr4_1 | mRNA | 20860515 | 20865293 | 20860515 | ID=Msa0539690-mRNA-1;Parent=Msa0539690;Name=Msa0539690-mRNA-1;_AED=0.14;_eAED=0.14;_QI=148|1|1|1|0.8|0.66|6|347|193 |
| chr4_1 | exon | 20860515 | 20860909 | 20860515 | ID=Msa0539690-mRNA-1:exon:5976;Parent=Msa0539690-mRNA-1 |
| chr4_1 | exon | 20861022 | 20861090 | 20861022 | ID=Msa0539690-mRNA-1:exon:5975;Parent=Msa0539690-mRNA-1 |
| chr4_1 | exon | 20863285 | 20863350 | 20863285 | ID=Msa0539690-mRNA-1:exon:5974;Parent=Msa0539690-mRNA-1 |
| chr4_1 | exon | 20863464 | 20863586 | 20863464 | ID=Msa0539690-mRNA-1:exon:5973;Parent=Msa0539690-mRNA-1 |
| chr4_1 | exon | 20864846 | 20865232 | 20864846 | ID=Msa0539690-mRNA-1:exon:5972;Parent=Msa0539690-mRNA-1 |
| chr4_1 | exon | 20865257 | 20865293 | 20865257 | ID=Msa0539690-mRNA-1:exon:5971;Parent=Msa0539690-mRNA-1 |
| chr4_1 | five_prime_UTR | 20865257 | 20865293 | 20865257 | ID=Msa0539690-mRNA-1:five_prime_utr;Parent=Msa0539690-mRNA-1 |
| chr4_1 | five_prime_UTR | 20865122 | 20865232 | 20865122 | ID=Msa0539690-mRNA-1:five_prime_utr;Parent=Msa0539690-mRNA-1 |
| chr4_1 | CDS | 20864846 | 20865121 | 20864846 | ID=Msa0539690-mRNA-1:cds;Parent=Msa0539690-mRNA-1 |
| chr4_1 | CDS | 20863464 | 20863586 | 20863464 | ID=Msa0539690-mRNA-1:cds;Parent=Msa0539690-mRNA-1 |
| chr4_1 | CDS | 20863285 | 20863350 | 20863285 | ID=Msa0539690-mRNA-1:cds;Parent=Msa0539690-mRNA-1 |
| chr4_1 | CDS | 20861022 | 20861090 | 20861022 | ID=Msa0539690-mRNA-1:cds;Parent=Msa0539690-mRNA-1 |
| chr4_1 | CDS | 20860862 | 20860909 | 20860862 | ID=Msa0539690-mRNA-1:cds;Parent=Msa0539690-mRNA-1 |
| chr4_1 | three_prime_UTR | 20860515 | 20860861 | 20860515 | ID=Msa0539690-mRNA-1:three_prime_utr;Parent=Msa0539690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
