Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539870 | XP_024626574.1 | 62.154 | 325 | 44 | 6 | 1 | 311 | 1 | 260 | 7.91e-119 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539870 | A0A072TYR1 | 61.610 | 323 | 50 | 6 | 1 | 309 | 1 | 263 | 2.30e-114 | 350 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0539870 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539870 | MtrunA17_Chr2g0287651 | 60.714 | 168 | 53 | 2 | 162 | 316 | 58 | 225 | 1.58e-63 | 218 |
| Msa0539870 | MtrunA17_Chr2g0287651 | 60.000 | 65 | 26 | 0 | 316 | 380 | 494 | 558 | 3.88e-18 | 86.3 |
| Msa0539870 | MtrunA17_Chr1g0203051 | 32.301 | 226 | 133 | 6 | 111 | 316 | 4 | 229 | 3.12e-22 | 98.6 |
| Msa0539870 | MtrunA17_Chr8g0389811 | 36.134 | 119 | 68 | 3 | 147 | 257 | 48 | 166 | 4.72e-13 | 67.8 |
| Msa0539870 | MtrunA17_Chr6g0479721 | 67.308 | 52 | 14 | 2 | 1 | 51 | 1 | 50 | 2.00e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGACTTTACGGATTT+TGG | 0.057115 | 4_1:-21176475 | Msa0539870:CDS |
| AATAAGAACTTGTCATATAA+TGG | 0.240494 | 4_1:-21175513 | Msa0539870:CDS |
| TGTTCATTACAGACCCAAAA+AGG | 0.258968 | 4_1:-21175672 | Msa0539870:CDS |
| TGCATTTACACCCTGTTTAT+CGG | 0.264525 | 4_1:-21175586 | Msa0539870:CDS |
| AGTGATGATGGTGGTTGTTC+TGG | 0.317361 | 4_1:-21176253 | Msa0539870:CDS |
| CATTAACTGCTGAAGGAATA+AGG | 0.318241 | 4_1:-21175928 | Msa0539870:CDS |
| TGCTGAAGGAATAAGGAAAA+TGG | 0.318497 | 4_1:-21175921 | Msa0539870:CDS |
| AAACAACAACAATGACTTTA+CGG | 0.325210 | 4_1:-21176482 | Msa0539870:CDS |
| CTGTTAGGAAGAGTGATATT+AGG | 0.332219 | 4_1:-21175835 | Msa0539870:CDS |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.364482 | 4_1:+21175612 | None:intergenic |
| ATAAGAACTTGTCATATAAT+GGG | 0.396367 | 4_1:-21175512 | Msa0539870:CDS |
| AGCATTTATCAAGGTTAGAT+AGG | 0.409294 | 4_1:-21175745 | Msa0539870:CDS |
| GCTCAGAAGGGTGGATATCC+TGG | 0.409450 | 4_1:-21175479 | Msa0539870:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | 4_1:-21176229 | Msa0539870:CDS |
| GGTACACCGAAACATGATTA+CGG | 0.433163 | 4_1:-21176454 | Msa0539870:CDS |
| CGAGGCTGCTGAAATCTATA+CGG | 0.448201 | 4_1:-21174553 | Msa0539870:CDS |
| TAATGAACATGGAGCCTAGC+TGG | 0.450234 | 4_1:+21175686 | None:intergenic |
| GATATTAGGCACAATGTTAA+CGG | 0.462762 | 4_1:-21175821 | Msa0539870:CDS |
| GGGATACATGGTGGCTCAGA+AGG | 0.464555 | 4_1:-21175492 | Msa0539870:CDS |
| GATGAGCGATATGATGAAAC+TGG | 0.468588 | 4_1:-21176286 | Msa0539870:CDS |
| GAAACATATCCGATCATTGT+TGG | 0.469215 | 4_1:-21176406 | Msa0539870:CDS |
| GTAGATAAAGCACAGATTGA+TGG | 0.478198 | 4_1:-21175551 | Msa0539870:CDS |
| TGATTACGGTTCTACGGATG+TGG | 0.481654 | 4_1:-21176440 | Msa0539870:CDS |
| CAGCACAGGGGATGAAAACC+TGG | 0.488423 | 4_1:+21174602 | None:intergenic |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | 4_1:-21176238 | Msa0539870:CDS |
| CGCAGATGAGTTGTCAGCAC+AGG | 0.491267 | 4_1:+21174588 | None:intergenic |
| AAACATATCCGATCATTGTT+GGG | 0.491804 | 4_1:-21176405 | Msa0539870:CDS |
| GAGCGAAGAAGCATTTATCA+AGG | 0.496128 | 4_1:-21175754 | Msa0539870:CDS |
| GCAGTATGTATGCAACAAGC+AGG | 0.502107 | 4_1:-21175783 | Msa0539870:CDS |
| TGTAGTTGTTGGTGAGGAAA+TGG | 0.504666 | 4_1:-21175963 | Msa0539870:CDS |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | 4_1:-21175974 | Msa0539870:CDS |
| GTGAAAGAAGAGATTATGAA+AGG | 0.507624 | 4_1:-21174513 | Msa0539870:CDS |
| GTAGAACCGTAATCATGTTT+CGG | 0.514557 | 4_1:+21176448 | None:intergenic |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 4_1:-21175935 | Msa0539870:CDS |
| CCGATCATTGTTGGGAGTGG+TGG | 0.525336 | 4_1:-21176397 | Msa0539870:CDS |
| GATGAAAGTCAAGGTGTTGA+AGG | 0.526322 | 4_1:-21176184 | Msa0539870:CDS |
| CCACCACTCCCAACAATGAT+CGG | 0.545431 | 4_1:+21176397 | None:intergenic |
| GAAACATGATTACGGTTCTA+CGG | 0.552732 | 4_1:-21176446 | Msa0539870:CDS |
| TTGTCATATAATGGGATACA+TGG | 0.555297 | 4_1:-21175504 | Msa0539870:CDS |
| TGTAAATGCACAGCATTGGT+TGG | 0.565762 | 4_1:+21175599 | None:intergenic |
| TTGTTGGTGAGGAAATGGTA+AGG | 0.572827 | 4_1:-21175958 | Msa0539870:CDS |
| TACATGGTGGCTCAGAAGGG+TGG | 0.573659 | 4_1:-21175488 | Msa0539870:CDS |
| TATCCGATCATTGTTGGGAG+TGG | 0.573961 | 4_1:-21176400 | Msa0539870:CDS |
| GCAGATGAGTTGTCAGCACA+GGG | 0.575960 | 4_1:+21174589 | None:intergenic |
| AGGGTGTAAATGCACAGCAT+TGG | 0.584309 | 4_1:+21175595 | None:intergenic |
| CAGTATGTATGCAACAAGCA+GGG | 0.584535 | 4_1:-21175782 | Msa0539870:CDS |
| GATGAAGGTGAACGTGATGA+AGG | 0.589312 | 4_1:-21176109 | Msa0539870:CDS |
| GATGAACGTGAAGGTGATGA+AGG | 0.589312 | 4_1:-21176124 | Msa0539870:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | 4_1:-21176217 | Msa0539870:CDS |
| GTTGAAGGTGAACGTGATGA+AGG | 0.592601 | 4_1:-21176169 | Msa0539870:CDS |
| GAAGGTGAACGTGATGAAGG+TGG | 0.592672 | 4_1:-21176106 | Msa0539870:CDS |
| GGAGACAATGAAAGTGATGA+TGG | 0.609236 | 4_1:-21176265 | Msa0539870:CDS |
| GGATACATGGTGGCTCAGAA+GGG | 0.612576 | 4_1:-21175491 | Msa0539870:CDS |
| AATCTGTGCTTTATCTACCT+CGG | 0.613894 | 4_1:+21175556 | None:intergenic |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | 4_1:-21176013 | Msa0539870:CDS |
| TCTGCGTTGTCTTGAACGCG+AGG | 0.617404 | 4_1:-21174571 | Msa0539870:CDS |
| AGTATGTATGCAACAAGCAG+GGG | 0.634341 | 4_1:-21175781 | Msa0539870:CDS |
| TGCACAGCATTGGTTGGAGT+AGG | 0.638605 | 4_1:+21175605 | None:intergenic |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | 4_1:-21175700 | Msa0539870:CDS |
| GGTGAACGTGATGAAGGTGG+AGG | 0.647603 | 4_1:-21176103 | Msa0539870:CDS |
| TGATGATGTAGTTGTTGGTG+AGG | 0.665725 | 4_1:-21175969 | Msa0539870:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 4_1:-21176022 | Msa0539870:CDS |
| TCATATAATGGGATACATGG+TGG | 0.669224 | 4_1:-21175501 | Msa0539870:CDS |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | 4_1:-21175805 | Msa0539870:CDS |
| GATGATGATGATGTGAGTCA+TGG | 0.683220 | 4_1:-21176343 | Msa0539870:intron |
| ACTTTGTACGAGTGAGACGT+CGG | 0.685988 | 4_1:+21175711 | None:intergenic |
| AGGTGTTGCACTGAGTGTGA+AGG | 0.686205 | 4_1:-21174493 | Msa0539870:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.694719 | 4_1:-21176043 | Msa0539870:CDS |
| GGTGGAGGTGATGAAAGTGA+AGG | 0.700815 | 4_1:-21176088 | Msa0539870:CDS |
| TGTTTATCGGAAAATATCCG+AGG | 0.704996 | 4_1:-21175573 | Msa0539870:CDS |
| GACAATGAAAGTGATGATGG+TGG | 0.706532 | 4_1:-21176262 | Msa0539870:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 4_1:-21176028 | Msa0539870:CDS |
| GGTGAAAGTGATGAAAGTGA+AGG | 0.717258 | 4_1:-21176148 | Msa0539870:CDS |
| AGTGAAGGTGATGAACGTGA+AGG | 0.728116 | 4_1:-21176133 | Msa0539870:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.739796 | 4_1:-21176193 | Msa0539870:CDS |
| CAGATGAGTTGTCAGCACAG+GGG | 0.773409 | 4_1:+21174590 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACGATTTTTATTATAAGTA+CGG | - | chr4_1:21175097-21175116 | Msa0539870:intron | 15.0% |
| !! | AAACAATAAAAACTTATATG+TGG | - | chr4_1:21175854-21175873 | Msa0539870:intron | 15.0% |
| !! | AACAATAAAAACTTATATGT+GGG | - | chr4_1:21175855-21175874 | Msa0539870:intron | 15.0% |
| !!! | TACGATTTTTATTATAAGTA+CGG | - | chr4_1:21175097-21175116 | Msa0539870:intron | 15.0% |
| !! | AAACAATAAAAACTTATATG+TGG | - | chr4_1:21175854-21175873 | Msa0539870:intron | 15.0% |
| !! | AACAATAAAAACTTATATGT+GGG | - | chr4_1:21175855-21175874 | Msa0539870:intron | 15.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr4_1:21175459-21175478 | Msa0539870:intron | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr4_1:21175460-21175479 | Msa0539870:intron | 20.0% |
| !!! | TTTTTGTCAAAGTAATTGTA+GGG | + | chr4_1:21175541-21175560 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAAAGTAATTGT+AGG | + | chr4_1:21175542-21175561 | None:intergenic | 20.0% |
| !!! | TATCAAGAATTAAGCTTTTT+TGG | - | chr4_1:21176032-21176051 | Msa0539870:CDS | 20.0% |
| !! | ATATGAGAACAAAGATTTAT+GGG | - | chr4_1:21176167-21176186 | Msa0539870:CDS | 20.0% |
| !! | AAATCATAAAGAGTTATGTT+AGG | - | chr4_1:21176259-21176278 | Msa0539870:CDS | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr4_1:21175459-21175478 | Msa0539870:intron | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr4_1:21175460-21175479 | Msa0539870:intron | 20.0% |
| !!! | TTTTTGTCAAAGTAATTGTA+GGG | + | chr4_1:21175541-21175560 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCAAAGTAATTGT+AGG | + | chr4_1:21175542-21175561 | None:intergenic | 20.0% |
| !!! | TATCAAGAATTAAGCTTTTT+TGG | - | chr4_1:21176032-21176051 | Msa0539870:CDS | 20.0% |
| !! | ATATGAGAACAAAGATTTAT+GGG | - | chr4_1:21176167-21176186 | Msa0539870:CDS | 20.0% |
| !! | AAATCATAAAGAGTTATGTT+AGG | - | chr4_1:21176259-21176278 | Msa0539870:CDS | 20.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr4_1:21174490-21174509 | Msa0539870:CDS | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+AGG | - | chr4_1:21174654-21174673 | Msa0539870:intron | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr4_1:21175037-21175056 | Msa0539870:intron | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr4_1:21175672-21175691 | Msa0539870:CDS | 25.0% |
| !!! | AAGAATTAAGCTTTTTTGGA+AGG | - | chr4_1:21176036-21176055 | Msa0539870:CDS | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr4_1:21176068-21176087 | Msa0539870:intron | 25.0% |
| !! | ATCTTTGTTCTCATATGTTT+TGG | + | chr4_1:21176163-21176182 | None:intergenic | 25.0% |
| ! | CATATGAGAACAAAGATTTA+TGG | - | chr4_1:21176166-21176185 | Msa0539870:CDS | 25.0% |
| !!! | ATTTCTGCATAATTTTGATG+AGG | - | chr4_1:21176302-21176321 | Msa0539870:intron | 25.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr4_1:21174490-21174509 | Msa0539870:CDS | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+AGG | - | chr4_1:21174654-21174673 | Msa0539870:intron | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr4_1:21175037-21175056 | Msa0539870:intron | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr4_1:21175672-21175691 | Msa0539870:CDS | 25.0% |
| !!! | AAGAATTAAGCTTTTTTGGA+AGG | - | chr4_1:21176036-21176055 | Msa0539870:CDS | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr4_1:21176068-21176087 | Msa0539870:intron | 25.0% |
| !! | ATCTTTGTTCTCATATGTTT+TGG | + | chr4_1:21176163-21176182 | None:intergenic | 25.0% |
| ! | CATATGAGAACAAAGATTTA+TGG | - | chr4_1:21176166-21176185 | Msa0539870:CDS | 25.0% |
| !!! | ATTTCTGCATAATTTTGATG+AGG | - | chr4_1:21176302-21176321 | Msa0539870:intron | 25.0% |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr4_1:21174497-21174516 | Msa0539870:CDS | 30.0% |
| AAACATATCCGATCATTGTT+GGG | - | chr4_1:21174567-21174586 | Msa0539870:CDS | 30.0% | |
| AAGAATACTCAAAGGAATAC+AGG | - | chr4_1:21174662-21174681 | Msa0539870:intron | 30.0% | |
| TATAAGTACGGTAAGTGTAA+AGG | - | chr4_1:21175109-21175128 | Msa0539870:intron | 30.0% | |
| GATATTAGGCACAATGTTAA+CGG | - | chr4_1:21175151-21175170 | Msa0539870:intron | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | - | chr4_1:21175227-21175246 | Msa0539870:intron | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr4_1:21175316-21175335 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr4_1:21175330-21175349 | Msa0539870:intron | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr4_1:21175331-21175350 | Msa0539870:intron | 30.0% |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr4_1:21175468-21175487 | Msa0539870:intron | 30.0% |
| ! | AAAAATGCGTGCTGTTATTA+AGG | - | chr4_1:21175558-21175577 | Msa0539870:CDS | 30.0% |
| GAATATTCACAAAAGGAATG+TGG | + | chr4_1:21175637-21175656 | None:intergenic | 30.0% | |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr4_1:21175671-21175690 | Msa0539870:intron | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+TGG | - | chr4_1:21175709-21175728 | Msa0539870:CDS | 30.0% |
| CAAATATAACTGTTTGTGAG+TGG | + | chr4_1:21175813-21175832 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | - | chr4_1:21175811-21175830 | Msa0539870:CDS | 30.0% | |
| ! | ACCAGTTTTCTAGATTGTAT+GGG | - | chr4_1:21175883-21175902 | Msa0539870:CDS | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | - | chr4_1:21176071-21176090 | Msa0539870:intron | 30.0% |
| ! | AGGATGAATTTGAAGAGTTT+TGG | - | chr4_1:21176091-21176110 | Msa0539870:CDS | 30.0% |
| ! | GGATGAATTTGAAGAGTTTT+GGG | - | chr4_1:21176092-21176111 | Msa0539870:CDS | 30.0% |
| ! | GATGAATTTGAAGAGTTTTG+GGG | - | chr4_1:21176093-21176112 | Msa0539870:CDS | 30.0% |
| !! | ATGAATTTGAAGAGTTTTGG+GGG | - | chr4_1:21176094-21176113 | Msa0539870:CDS | 30.0% |
| AAGAGTTATGTTAGGAAGAA+AGG | - | chr4_1:21176267-21176286 | Msa0539870:CDS | 30.0% | |
| !! | TTGTAGCTGATTTTAAATCC+AGG | - | chr4_1:21176352-21176371 | Msa0539870:CDS | 30.0% |
| GTGAAAGAAGAGATTATGAA+AGG | - | chr4_1:21176459-21176478 | Msa0539870:CDS | 30.0% | |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr4_1:21174497-21174516 | Msa0539870:CDS | 30.0% |
| AAACATATCCGATCATTGTT+GGG | - | chr4_1:21174567-21174586 | Msa0539870:CDS | 30.0% | |
| AAGAATACTCAAAGGAATAC+AGG | - | chr4_1:21174662-21174681 | Msa0539870:intron | 30.0% | |
| TATAAGTACGGTAAGTGTAA+AGG | - | chr4_1:21175109-21175128 | Msa0539870:intron | 30.0% | |
| GATATTAGGCACAATGTTAA+CGG | - | chr4_1:21175151-21175170 | Msa0539870:intron | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | - | chr4_1:21175227-21175246 | Msa0539870:intron | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr4_1:21175316-21175335 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr4_1:21175330-21175349 | Msa0539870:intron | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr4_1:21175331-21175350 | Msa0539870:intron | 30.0% |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr4_1:21175468-21175487 | Msa0539870:intron | 30.0% |
| ! | AAAAATGCGTGCTGTTATTA+AGG | - | chr4_1:21175558-21175577 | Msa0539870:CDS | 30.0% |
| GAATATTCACAAAAGGAATG+TGG | + | chr4_1:21175637-21175656 | None:intergenic | 30.0% | |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr4_1:21175671-21175690 | Msa0539870:intron | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+TGG | - | chr4_1:21175709-21175728 | Msa0539870:CDS | 30.0% |
| CAAATATAACTGTTTGTGAG+TGG | + | chr4_1:21175813-21175832 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | - | chr4_1:21175811-21175830 | Msa0539870:CDS | 30.0% | |
| ! | ACCAGTTTTCTAGATTGTAT+GGG | - | chr4_1:21175883-21175902 | Msa0539870:CDS | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | - | chr4_1:21176071-21176090 | Msa0539870:intron | 30.0% |
| ! | AGGATGAATTTGAAGAGTTT+TGG | - | chr4_1:21176091-21176110 | Msa0539870:CDS | 30.0% |
| ! | GGATGAATTTGAAGAGTTTT+GGG | - | chr4_1:21176092-21176111 | Msa0539870:CDS | 30.0% |
| ! | GATGAATTTGAAGAGTTTTG+GGG | - | chr4_1:21176093-21176112 | Msa0539870:CDS | 30.0% |
| !! | ATGAATTTGAAGAGTTTTGG+GGG | - | chr4_1:21176094-21176113 | Msa0539870:CDS | 30.0% |
| AAGAGTTATGTTAGGAAGAA+AGG | - | chr4_1:21176267-21176286 | Msa0539870:CDS | 30.0% | |
| !! | TTGTAGCTGATTTTAAATCC+AGG | - | chr4_1:21176352-21176371 | Msa0539870:CDS | 30.0% |
| GTGAAAGAAGAGATTATGAA+AGG | - | chr4_1:21176459-21176478 | Msa0539870:CDS | 30.0% | |
| GTAGAACCGTAATCATGTTT+CGG | + | chr4_1:21174527-21174546 | None:intergenic | 35.0% | |
| GAAACATGATTACGGTTCTA+CGG | - | chr4_1:21174526-21174545 | Msa0539870:CDS | 35.0% | |
| GAAACATATCCGATCATTGT+TGG | - | chr4_1:21174566-21174585 | Msa0539870:CDS | 35.0% | |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr4_1:21174743-21174762 | Msa0539870:intron | 35.0% |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr4_1:21174779-21174798 | Msa0539870:intron | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr4_1:21174929-21174948 | Msa0539870:intron | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | chr4_1:21174998-21175017 | Msa0539870:intron | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | chr4_1:21175044-21175063 | Msa0539870:intron | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr4_1:21175051-21175070 | Msa0539870:intron | 35.0% | |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr4_1:21175122-21175141 | Msa0539870:intron | 35.0% |
| CTGTTAGGAAGAGTGATATT+AGG | - | chr4_1:21175137-21175156 | Msa0539870:intron | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | - | chr4_1:21175167-21175186 | Msa0539870:intron | 35.0% | |
| !! | TTTTGGGTCTGTAATGAACA+TGG | + | chr4_1:21175300-21175319 | None:intergenic | 35.0% |
| TGTTCATTACAGACCCAAAA+AGG | - | chr4_1:21175300-21175319 | Msa0539870:intron | 35.0% | |
| GTTCATTACAGACCCAAAAA+GGG | - | chr4_1:21175301-21175320 | Msa0539870:intron | 35.0% | |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr4_1:21175317-21175336 | None:intergenic | 35.0% |
| TGCATTTACACCCTGTTTAT+CGG | - | chr4_1:21175386-21175405 | Msa0539870:intron | 35.0% | |
| ! | CGGATATTTTCCGATAAACA+GGG | + | chr4_1:21175399-21175418 | None:intergenic | 35.0% |
| ! | TCGGATATTTTCCGATAAAC+AGG | + | chr4_1:21175400-21175419 | None:intergenic | 35.0% |
| TGTTTATCGGAAAATATCCG+AGG | - | chr4_1:21175399-21175418 | Msa0539870:intron | 35.0% | |
| AATCTGTGCTTTATCTACCT+CGG | + | chr4_1:21175419-21175438 | None:intergenic | 35.0% | |
| GTAGATAAAGCACAGATTGA+TGG | - | chr4_1:21175421-21175440 | Msa0539870:intron | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | chr4_1:21175471-21175490 | Msa0539870:intron | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | chr4_1:21175644-21175663 | None:intergenic | 35.0% | |
| !! | AAATGTCTATTTTGGGCAGA+TGG | - | chr4_1:21175679-21175698 | Msa0539870:CDS | 35.0% |
| !! | AGTTATATTTGGTGCTGCAT+TGG | - | chr4_1:21175822-21175841 | Msa0539870:CDS | 35.0% |
| ! | GACCAGTTTTCTAGATTGTA+TGG | - | chr4_1:21175882-21175901 | Msa0539870:CDS | 35.0% |
| TCCCATACAATCTAGAAAAC+TGG | + | chr4_1:21175887-21175906 | None:intergenic | 35.0% | |
| ! | CCATCTGTTATAACTGCTTT+TGG | + | chr4_1:21175919-21175938 | None:intergenic | 35.0% |
| CCAAAAGCAGTTATAACAGA+TGG | - | chr4_1:21175916-21175935 | Msa0539870:CDS | 35.0% | |
| GCATCTAAACAAGAATGCTA+TGG | - | chr4_1:21176005-21176024 | Msa0539870:CDS | 35.0% | |
| !!! | TGAATTTGAAGAGTTTTGGG+GGG | - | chr4_1:21176095-21176114 | Msa0539870:CDS | 35.0% |
| !!! | TCATATGTTTTGGTAACCCA+TGG | + | chr4_1:21176153-21176172 | None:intergenic | 35.0% |
| !! | AATTTTGATGAGGCAATGAG+AGG | - | chr4_1:21176312-21176331 | Msa0539870:intron | 35.0% |
| GTAGAACCGTAATCATGTTT+CGG | + | chr4_1:21174527-21174546 | None:intergenic | 35.0% | |
| GAAACATGATTACGGTTCTA+CGG | - | chr4_1:21174526-21174545 | Msa0539870:CDS | 35.0% | |
| GAAACATATCCGATCATTGT+TGG | - | chr4_1:21174566-21174585 | Msa0539870:CDS | 35.0% | |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr4_1:21174743-21174762 | Msa0539870:intron | 35.0% |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr4_1:21174779-21174798 | Msa0539870:intron | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr4_1:21174929-21174948 | Msa0539870:intron | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | chr4_1:21174998-21175017 | Msa0539870:intron | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | chr4_1:21175044-21175063 | Msa0539870:intron | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr4_1:21175051-21175070 | Msa0539870:intron | 35.0% | |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr4_1:21175122-21175141 | Msa0539870:intron | 35.0% |
| CTGTTAGGAAGAGTGATATT+AGG | - | chr4_1:21175137-21175156 | Msa0539870:intron | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | - | chr4_1:21175167-21175186 | Msa0539870:intron | 35.0% | |
| !! | TTTTGGGTCTGTAATGAACA+TGG | + | chr4_1:21175300-21175319 | None:intergenic | 35.0% |
| TGTTCATTACAGACCCAAAA+AGG | - | chr4_1:21175300-21175319 | Msa0539870:intron | 35.0% | |
| GTTCATTACAGACCCAAAAA+GGG | - | chr4_1:21175301-21175320 | Msa0539870:intron | 35.0% | |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr4_1:21175317-21175336 | None:intergenic | 35.0% |
| TGCATTTACACCCTGTTTAT+CGG | - | chr4_1:21175386-21175405 | Msa0539870:intron | 35.0% | |
| ! | CGGATATTTTCCGATAAACA+GGG | + | chr4_1:21175399-21175418 | None:intergenic | 35.0% |
| ! | TCGGATATTTTCCGATAAAC+AGG | + | chr4_1:21175400-21175419 | None:intergenic | 35.0% |
| TGTTTATCGGAAAATATCCG+AGG | - | chr4_1:21175399-21175418 | Msa0539870:intron | 35.0% | |
| AATCTGTGCTTTATCTACCT+CGG | + | chr4_1:21175419-21175438 | None:intergenic | 35.0% | |
| GTAGATAAAGCACAGATTGA+TGG | - | chr4_1:21175421-21175440 | Msa0539870:intron | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | chr4_1:21175471-21175490 | Msa0539870:intron | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | chr4_1:21175644-21175663 | None:intergenic | 35.0% | |
| !! | AAATGTCTATTTTGGGCAGA+TGG | - | chr4_1:21175679-21175698 | Msa0539870:CDS | 35.0% |
| !! | AGTTATATTTGGTGCTGCAT+TGG | - | chr4_1:21175822-21175841 | Msa0539870:CDS | 35.0% |
| ! | GACCAGTTTTCTAGATTGTA+TGG | - | chr4_1:21175882-21175901 | Msa0539870:CDS | 35.0% |
| TCCCATACAATCTAGAAAAC+TGG | + | chr4_1:21175887-21175906 | None:intergenic | 35.0% | |
| ! | CCATCTGTTATAACTGCTTT+TGG | + | chr4_1:21175919-21175938 | None:intergenic | 35.0% |
| CCAAAAGCAGTTATAACAGA+TGG | - | chr4_1:21175916-21175935 | Msa0539870:CDS | 35.0% | |
| GCATCTAAACAAGAATGCTA+TGG | - | chr4_1:21176005-21176024 | Msa0539870:CDS | 35.0% | |
| !!! | TGAATTTGAAGAGTTTTGGG+GGG | - | chr4_1:21176095-21176114 | Msa0539870:CDS | 35.0% |
| !!! | TCATATGTTTTGGTAACCCA+TGG | + | chr4_1:21176153-21176172 | None:intergenic | 35.0% |
| !! | AATTTTGATGAGGCAATGAG+AGG | - | chr4_1:21176312-21176331 | Msa0539870:intron | 35.0% |
| GGTACACCGAAACATGATTA+CGG | - | chr4_1:21174518-21174537 | Msa0539870:CDS | 40.0% | |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr4_1:21174629-21174648 | Msa0539870:CDS | 40.0% |
| GATGAGCGATATGATGAAAC+TGG | - | chr4_1:21174686-21174705 | Msa0539870:intron | 40.0% | |
| GGAGACAATGAAAGTGATGA+TGG | - | chr4_1:21174707-21174726 | Msa0539870:intron | 40.0% | |
| !! | GACAATGAAAGTGATGATGG+TGG | - | chr4_1:21174710-21174729 | Msa0539870:intron | 40.0% |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr4_1:21174734-21174753 | Msa0539870:intron | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr4_1:21174755-21174774 | Msa0539870:intron | 40.0% | |
| !! | GATGAAAGTCAAGGTGTTGA+AGG | - | chr4_1:21174788-21174807 | Msa0539870:intron | 40.0% |
| GGTGAAAGTGATGAAAGTGA+AGG | - | chr4_1:21174824-21174843 | Msa0539870:intron | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr4_1:21174899-21174918 | Msa0539870:intron | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr4_1:21174899-21174918 | Msa0539870:intron | 40.0% | |
| ! | TGATGATGTAGTTGTTGGTG+AGG | - | chr4_1:21175003-21175022 | Msa0539870:intron | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr4_1:21175009-21175028 | Msa0539870:intron | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr4_1:21175014-21175033 | Msa0539870:intron | 40.0% |
| CAGTATGTATGCAACAAGCA+GGG | - | chr4_1:21175190-21175209 | Msa0539870:intron | 40.0% | |
| AGTATGTATGCAACAAGCAG+GGG | - | chr4_1:21175191-21175210 | Msa0539870:intron | 40.0% | |
| !! | GAGCGAAGAAGCATTTATCA+AGG | - | chr4_1:21175218-21175237 | Msa0539870:intron | 40.0% |
| !! | TGTAAATGCACAGCATTGGT+TGG | + | chr4_1:21175376-21175395 | None:intergenic | 40.0% |
| ! | ATGCGTGCTGTTATTAAGGA+TGG | - | chr4_1:21175562-21175581 | Msa0539870:CDS | 40.0% |
| GAATATTCTGCCACTGATGA+CGG | - | chr4_1:21175649-21175668 | Msa0539870:intron | 40.0% | |
| !! | TTATTTCTGCTTTGGCGATG+TGG | - | chr4_1:21175717-21175736 | Msa0539870:CDS | 40.0% |
| GAACAAATACCACTATCCGT+TGG | - | chr4_1:21175765-21175784 | Msa0539870:CDS | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | chr4_1:21175777-21175796 | None:intergenic | 40.0% | |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | - | chr4_1:21175778-21175797 | Msa0539870:CDS | 40.0% |
| GCAGTTATAACAGATGGTGA+TGG | - | chr4_1:21175922-21175941 | Msa0539870:CDS | 40.0% | |
| !! | AGATGGTGATGGTTCTATGA+GGG | - | chr4_1:21175933-21175952 | Msa0539870:CDS | 40.0% |
| ATTGCCTTGAGAACAATCCA+TGG | - | chr4_1:21176133-21176152 | Msa0539870:CDS | 40.0% | |
| TTGCCTTGAGAACAATCCAT+GGG | - | chr4_1:21176134-21176153 | Msa0539870:CDS | 40.0% | |
| ! | TAACCCATGGATTGTTCTCA+AGG | + | chr4_1:21176140-21176159 | None:intergenic | 40.0% |
| GGTACACCGAAACATGATTA+CGG | - | chr4_1:21174518-21174537 | Msa0539870:CDS | 40.0% | |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr4_1:21174629-21174648 | Msa0539870:CDS | 40.0% |
| GATGAGCGATATGATGAAAC+TGG | - | chr4_1:21174686-21174705 | Msa0539870:intron | 40.0% | |
| GGAGACAATGAAAGTGATGA+TGG | - | chr4_1:21174707-21174726 | Msa0539870:intron | 40.0% | |
| !! | GACAATGAAAGTGATGATGG+TGG | - | chr4_1:21174710-21174729 | Msa0539870:intron | 40.0% |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr4_1:21174734-21174753 | Msa0539870:intron | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr4_1:21174755-21174774 | Msa0539870:intron | 40.0% | |
| !! | GATGAAAGTCAAGGTGTTGA+AGG | - | chr4_1:21174788-21174807 | Msa0539870:intron | 40.0% |
| GGTGAAAGTGATGAAAGTGA+AGG | - | chr4_1:21174824-21174843 | Msa0539870:intron | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr4_1:21174899-21174918 | Msa0539870:intron | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr4_1:21174899-21174918 | Msa0539870:intron | 40.0% | |
| ! | TGATGATGTAGTTGTTGGTG+AGG | - | chr4_1:21175003-21175022 | Msa0539870:intron | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr4_1:21175009-21175028 | Msa0539870:intron | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr4_1:21175014-21175033 | Msa0539870:intron | 40.0% |
| CAGTATGTATGCAACAAGCA+GGG | - | chr4_1:21175190-21175209 | Msa0539870:intron | 40.0% | |
| AGTATGTATGCAACAAGCAG+GGG | - | chr4_1:21175191-21175210 | Msa0539870:intron | 40.0% | |
| !! | GAGCGAAGAAGCATTTATCA+AGG | - | chr4_1:21175218-21175237 | Msa0539870:intron | 40.0% |
| !! | TGTAAATGCACAGCATTGGT+TGG | + | chr4_1:21175376-21175395 | None:intergenic | 40.0% |
| ! | ATGCGTGCTGTTATTAAGGA+TGG | - | chr4_1:21175562-21175581 | Msa0539870:CDS | 40.0% |
| GAATATTCTGCCACTGATGA+CGG | - | chr4_1:21175649-21175668 | Msa0539870:intron | 40.0% | |
| !! | TTATTTCTGCTTTGGCGATG+TGG | - | chr4_1:21175717-21175736 | Msa0539870:CDS | 40.0% |
| GAACAAATACCACTATCCGT+TGG | - | chr4_1:21175765-21175784 | Msa0539870:CDS | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | chr4_1:21175777-21175796 | None:intergenic | 40.0% | |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | - | chr4_1:21175778-21175797 | Msa0539870:CDS | 40.0% |
| GCAGTTATAACAGATGGTGA+TGG | - | chr4_1:21175922-21175941 | Msa0539870:CDS | 40.0% | |
| !! | AGATGGTGATGGTTCTATGA+GGG | - | chr4_1:21175933-21175952 | Msa0539870:CDS | 40.0% |
| ATTGCCTTGAGAACAATCCA+TGG | - | chr4_1:21176133-21176152 | Msa0539870:CDS | 40.0% | |
| TTGCCTTGAGAACAATCCAT+GGG | - | chr4_1:21176134-21176153 | Msa0539870:CDS | 40.0% | |
| ! | TAACCCATGGATTGTTCTCA+AGG | + | chr4_1:21176140-21176159 | None:intergenic | 40.0% |
| TGATTACGGTTCTACGGATG+TGG | - | chr4_1:21174532-21174551 | Msa0539870:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | chr4_1:21174572-21174591 | Msa0539870:CDS | 45.0% | |
| !! | AGTGATGATGGTGGTTGTTC+TGG | - | chr4_1:21174719-21174738 | Msa0539870:intron | 45.0% |
| GTTGAAGGTGAACGTGATGA+AGG | - | chr4_1:21174803-21174822 | Msa0539870:intron | 45.0% | |
| AGTGAAGGTGATGAACGTGA+AGG | - | chr4_1:21174839-21174858 | Msa0539870:intron | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | - | chr4_1:21174848-21174867 | Msa0539870:intron | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | - | chr4_1:21174863-21174882 | Msa0539870:intron | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr4_1:21174905-21174924 | Msa0539870:intron | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr4_1:21174905-21174924 | Msa0539870:intron | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr4_1:21174914-21174933 | Msa0539870:intron | 45.0% |
| GCAGTATGTATGCAACAAGC+AGG | - | chr4_1:21175189-21175208 | Msa0539870:intron | 45.0% | |
| ACTTTGTACGAGTGAGACGT+CGG | + | chr4_1:21175264-21175283 | None:intergenic | 45.0% | |
| TAATGAACATGGAGCCTAGC+TGG | + | chr4_1:21175289-21175308 | None:intergenic | 45.0% | |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr4_1:21175363-21175382 | None:intergenic | 45.0% |
| AGGGTGTAAATGCACAGCAT+TGG | + | chr4_1:21175380-21175399 | None:intergenic | 45.0% | |
| TTCTTAGTGAACCCAACACC+AGG | + | chr4_1:21175514-21175533 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | chr4_1:21175662-21175681 | None:intergenic | 45.0% | |
| CAGCCAGACAAAATCACCAA+CGG | + | chr4_1:21175784-21175803 | None:intergenic | 45.0% | |
| !! | ATTTGGTGCTGCATTGGTGA+TGG | - | chr4_1:21175828-21175847 | Msa0539870:CDS | 45.0% |
| !! | CAGATGGTGATGGTTCTATG+AGG | - | chr4_1:21175932-21175951 | Msa0539870:CDS | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr4_1:21175945-21175964 | Msa0539870:CDS | 45.0% | |
| TACCTGCGTGACGATTTCTT+TGG | - | chr4_1:21176198-21176217 | Msa0539870:CDS | 45.0% | |
| CGAGGCTGCTGAAATCTATA+CGG | - | chr4_1:21176419-21176438 | Msa0539870:CDS | 45.0% | |
| TGATTACGGTTCTACGGATG+TGG | - | chr4_1:21174532-21174551 | Msa0539870:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | chr4_1:21174572-21174591 | Msa0539870:CDS | 45.0% | |
| !! | AGTGATGATGGTGGTTGTTC+TGG | - | chr4_1:21174719-21174738 | Msa0539870:intron | 45.0% |
| GTTGAAGGTGAACGTGATGA+AGG | - | chr4_1:21174803-21174822 | Msa0539870:intron | 45.0% | |
| AGTGAAGGTGATGAACGTGA+AGG | - | chr4_1:21174839-21174858 | Msa0539870:intron | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | - | chr4_1:21174848-21174867 | Msa0539870:intron | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | - | chr4_1:21174863-21174882 | Msa0539870:intron | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr4_1:21174905-21174924 | Msa0539870:intron | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr4_1:21174905-21174924 | Msa0539870:intron | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr4_1:21174914-21174933 | Msa0539870:intron | 45.0% |
| GCAGTATGTATGCAACAAGC+AGG | - | chr4_1:21175189-21175208 | Msa0539870:intron | 45.0% | |
| ACTTTGTACGAGTGAGACGT+CGG | + | chr4_1:21175264-21175283 | None:intergenic | 45.0% | |
| TAATGAACATGGAGCCTAGC+TGG | + | chr4_1:21175289-21175308 | None:intergenic | 45.0% | |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr4_1:21175363-21175382 | None:intergenic | 45.0% |
| AGGGTGTAAATGCACAGCAT+TGG | + | chr4_1:21175380-21175399 | None:intergenic | 45.0% | |
| TTCTTAGTGAACCCAACACC+AGG | + | chr4_1:21175514-21175533 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | chr4_1:21175662-21175681 | None:intergenic | 45.0% | |
| CAGCCAGACAAAATCACCAA+CGG | + | chr4_1:21175784-21175803 | None:intergenic | 45.0% | |
| !! | ATTTGGTGCTGCATTGGTGA+TGG | - | chr4_1:21175828-21175847 | Msa0539870:CDS | 45.0% |
| !! | CAGATGGTGATGGTTCTATG+AGG | - | chr4_1:21175932-21175951 | Msa0539870:CDS | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr4_1:21175945-21175964 | Msa0539870:CDS | 45.0% | |
| TACCTGCGTGACGATTTCTT+TGG | - | chr4_1:21176198-21176217 | Msa0539870:CDS | 45.0% | |
| CGAGGCTGCTGAAATCTATA+CGG | - | chr4_1:21176419-21176438 | Msa0539870:CDS | 45.0% | |
| CCACCACTCCCAACAATGAT+CGG | + | chr4_1:21174578-21174597 | None:intergenic | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr4_1:21174806-21174825 | Msa0539870:intron | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr4_1:21174884-21174903 | Msa0539870:intron | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr4_1:21175272-21175291 | Msa0539870:intron | 50.0% |
| !! | TGCACAGCATTGGTTGGAGT+AGG | + | chr4_1:21175370-21175389 | None:intergenic | 50.0% |
| GGATACATGGTGGCTCAGAA+GGG | - | chr4_1:21175481-21175500 | Msa0539870:CDS | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | - | chr4_1:21175499-21175518 | Msa0539870:CDS | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | chr4_1:21175500-21175519 | Msa0539870:CDS | 50.0% | |
| !! | TGGTGATGGTTCTATGAGGG+AGG | - | chr4_1:21175936-21175955 | Msa0539870:CDS | 50.0% |
| TATGAGGGAGGCGATAAAGG+CGG | - | chr4_1:21175948-21175967 | Msa0539870:CDS | 50.0% | |
| CATAGACGATGACGCGTACT+TGG | + | chr4_1:21175979-21175998 | None:intergenic | 50.0% | |
| !!! | TGAAGAGTTTTGGGGGGACT+TGG | - | chr4_1:21176101-21176120 | Msa0539870:CDS | 50.0% |
| CACCAAAGAAATCGTCACGC+AGG | + | chr4_1:21176203-21176222 | None:intergenic | 50.0% | |
| CTGCGTGACGATTTCTTTGG+TGG | - | chr4_1:21176201-21176220 | Msa0539870:CDS | 50.0% | |
| CAGATGAGTTGTCAGCACAG+GGG | + | chr4_1:21176385-21176404 | None:intergenic | 50.0% | |
| GCAGATGAGTTGTCAGCACA+GGG | + | chr4_1:21176386-21176405 | None:intergenic | 50.0% | |
| ! | AGGTGTTGCACTGAGTGTGA+AGG | - | chr4_1:21176479-21176498 | Msa0539870:CDS | 50.0% |
| CCACCACTCCCAACAATGAT+CGG | + | chr4_1:21174578-21174597 | None:intergenic | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr4_1:21174806-21174825 | Msa0539870:intron | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr4_1:21174884-21174903 | Msa0539870:intron | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr4_1:21175272-21175291 | Msa0539870:intron | 50.0% |
| !! | TGCACAGCATTGGTTGGAGT+AGG | + | chr4_1:21175370-21175389 | None:intergenic | 50.0% |
| GGATACATGGTGGCTCAGAA+GGG | - | chr4_1:21175481-21175500 | Msa0539870:CDS | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | - | chr4_1:21175499-21175518 | Msa0539870:CDS | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | chr4_1:21175500-21175519 | Msa0539870:CDS | 50.0% | |
| !! | TGGTGATGGTTCTATGAGGG+AGG | - | chr4_1:21175936-21175955 | Msa0539870:CDS | 50.0% |
| TATGAGGGAGGCGATAAAGG+CGG | - | chr4_1:21175948-21175967 | Msa0539870:CDS | 50.0% | |
| CATAGACGATGACGCGTACT+TGG | + | chr4_1:21175979-21175998 | None:intergenic | 50.0% | |
| !!! | TGAAGAGTTTTGGGGGGACT+TGG | - | chr4_1:21176101-21176120 | Msa0539870:CDS | 50.0% |
| CACCAAAGAAATCGTCACGC+AGG | + | chr4_1:21176203-21176222 | None:intergenic | 50.0% | |
| CTGCGTGACGATTTCTTTGG+TGG | - | chr4_1:21176201-21176220 | Msa0539870:CDS | 50.0% | |
| CAGATGAGTTGTCAGCACAG+GGG | + | chr4_1:21176385-21176404 | None:intergenic | 50.0% | |
| GCAGATGAGTTGTCAGCACA+GGG | + | chr4_1:21176386-21176405 | None:intergenic | 50.0% | |
| ! | AGGTGTTGCACTGAGTGTGA+AGG | - | chr4_1:21176479-21176498 | Msa0539870:CDS | 50.0% |
| CCGATCATTGTTGGGAGTGG+TGG | - | chr4_1:21174575-21174594 | Msa0539870:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr4_1:21174869-21174888 | Msa0539870:intron | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr4_1:21175480-21175499 | Msa0539870:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr4_1:21175484-21175503 | Msa0539870:CDS | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr4_1:21175493-21175512 | Msa0539870:CDS | 55.0% | |
| CGCGTCATCGTCTATGTGCT+TGG | - | chr4_1:21175983-21176002 | Msa0539870:CDS | 55.0% | |
| CAGCACAGGGGATGAAAACC+TGG | + | chr4_1:21176373-21176392 | None:intergenic | 55.0% | |
| CGCAGATGAGTTGTCAGCAC+AGG | + | chr4_1:21176387-21176406 | None:intergenic | 55.0% | |
| TCTGCGTTGTCTTGAACGCG+AGG | - | chr4_1:21176401-21176420 | Msa0539870:CDS | 55.0% | |
| CCGATCATTGTTGGGAGTGG+TGG | - | chr4_1:21174575-21174594 | Msa0539870:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr4_1:21174869-21174888 | Msa0539870:intron | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr4_1:21175480-21175499 | Msa0539870:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr4_1:21175484-21175503 | Msa0539870:CDS | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr4_1:21175493-21175512 | Msa0539870:CDS | 55.0% | |
| CGCGTCATCGTCTATGTGCT+TGG | - | chr4_1:21175983-21176002 | Msa0539870:CDS | 55.0% | |
| CAGCACAGGGGATGAAAACC+TGG | + | chr4_1:21176373-21176392 | None:intergenic | 55.0% | |
| CGCAGATGAGTTGTCAGCAC+AGG | + | chr4_1:21176387-21176406 | None:intergenic | 55.0% | |
| TCTGCGTTGTCTTGAACGCG+AGG | - | chr4_1:21176401-21176420 | Msa0539870:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 21174485 | 21176509 | 21174485 | ID=Msa0539870;Name=Msa0539870 |
| chr4_1 | mRNA | 21174485 | 21176509 | 21174485 | ID=Msa0539870-mRNA-1;Parent=Msa0539870;Name=Msa0539870-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0|0.16|6|0|380 |
| chr4_1 | exon | 21176344 | 21176509 | 21176344 | ID=Msa0539870-mRNA-1:exon:6042;Parent=Msa0539870-mRNA-1 |
| chr4_1 | exon | 21176080 | 21176310 | 21176080 | ID=Msa0539870-mRNA-1:exon:6041;Parent=Msa0539870-mRNA-1 |
| chr4_1 | exon | 21175876 | 21176073 | 21175876 | ID=Msa0539870-mRNA-1:exon:6040;Parent=Msa0539870-mRNA-1 |
| chr4_1 | exon | 21175672 | 21175863 | 21175672 | ID=Msa0539870-mRNA-1:exon:6039;Parent=Msa0539870-mRNA-1 |
| chr4_1 | exon | 21175478 | 21175644 | 21175478 | ID=Msa0539870-mRNA-1:exon:6038;Parent=Msa0539870-mRNA-1 |
| chr4_1 | exon | 21174485 | 21174670 | 21174485 | ID=Msa0539870-mRNA-1:exon:6037;Parent=Msa0539870-mRNA-1 |
| chr4_1 | CDS | 21176344 | 21176509 | 21176344 | ID=Msa0539870-mRNA-1:cds;Parent=Msa0539870-mRNA-1 |
| chr4_1 | CDS | 21176080 | 21176310 | 21176080 | ID=Msa0539870-mRNA-1:cds;Parent=Msa0539870-mRNA-1 |
| chr4_1 | CDS | 21175876 | 21176073 | 21175876 | ID=Msa0539870-mRNA-1:cds;Parent=Msa0539870-mRNA-1 |
| chr4_1 | CDS | 21175672 | 21175863 | 21175672 | ID=Msa0539870-mRNA-1:cds;Parent=Msa0539870-mRNA-1 |
| chr4_1 | CDS | 21175478 | 21175644 | 21175478 | ID=Msa0539870-mRNA-1:cds;Parent=Msa0539870-mRNA-1 |
| chr4_1 | CDS | 21174485 | 21174670 | 21174485 | ID=Msa0539870-mRNA-1:cds;Parent=Msa0539870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
