Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541990 | XP_003606840.1 | 84.364 | 275 | 39 | 2 | 1 | 273 | 1 | 273 | 2.80e-148 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541990 | sp|Q1PES7|Y3622_ARATH | 29.565 | 115 | 77 | 2 | 9 | 123 | 8 | 118 | 2.49e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541990 | G7JEX9 | 84.364 | 275 | 39 | 2 | 1 | 273 | 1 | 273 | 1.34e-148 | 426 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0541990 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541990 | MtrunA17_Chr4g0033941 | 84.052 | 232 | 33 | 2 | 44 | 273 | 1 | 230 | 4.78e-121 | 345 |
| Msa0541990 | MtrunA17_Chr4g0033951 | 58.537 | 205 | 65 | 8 | 1 | 202 | 1 | 188 | 2.66e-66 | 205 |
| Msa0541990 | MtrunA17_Chr1g0154041 | 32.673 | 101 | 66 | 1 | 8 | 108 | 13 | 111 | 3.87e-15 | 75.1 |
| Msa0541990 | MtrunA17_Chr1g0154161 | 32.540 | 126 | 78 | 3 | 23 | 143 | 43 | 166 | 2.66e-13 | 68.9 |
| Msa0541990 | MtrunA17_Chr1g0154211 | 33.981 | 103 | 65 | 2 | 23 | 124 | 35 | 135 | 4.67e-12 | 65.5 |
| Msa0541990 | MtrunA17_Chr5g0419201 | 32.039 | 103 | 68 | 1 | 5 | 107 | 11 | 111 | 5.23e-12 | 63.2 |
| Msa0541990 | MtrunA17_Chr7g0233571 | 35.714 | 98 | 60 | 3 | 11 | 107 | 10 | 105 | 2.74e-11 | 62.0 |
| Msa0541990 | MtrunA17_Chr7g0233561 | 35.714 | 98 | 60 | 2 | 11 | 107 | 18 | 113 | 6.37e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541990 | AT3G06220.1 | 29.565 | 115 | 77 | 2 | 9 | 123 | 8 | 118 | 2.53e-13 | 67.0 |
Find 45 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTGGCCGCGATTAT+TGG | 0.150855 | 4_1:+26096668 | None:intergenic |
| AGTGATGCTTGAAGAGTTAT+TGG | 0.212786 | 4_1:-26096819 | Msa0541990:CDS |
| TGCAGCAACAATCATGTCTA+TGG | 0.232377 | 4_1:-26096489 | Msa0541990:CDS |
| ATTATTCTGGTAGGCTCTTC+TGG | 0.236095 | 4_1:-26096926 | Msa0541990:CDS |
| ACAAGAGATTGTTAAGGATT+TGG | 0.243204 | 4_1:-26096975 | Msa0541990:CDS |
| CATCAATGTTGCTGCAGCTT+TGG | 0.244862 | 4_1:+26096412 | None:intergenic |
| AATGACATTTATCTGCAAAT+TGG | 0.269252 | 4_1:-26096869 | Msa0541990:CDS |
| CAAGAGATTGTTAAGGATTT+GGG | 0.277836 | 4_1:-26096974 | Msa0541990:CDS |
| GAAGAATGCATTAATTATTC+TGG | 0.319956 | 4_1:-26096939 | Msa0541990:CDS |
| TTCTTTGATGATTGCGAAGA+AGG | 0.373079 | 4_1:+26097607 | None:intergenic |
| CAAAGCTGCAGCAACATTGA+TGG | 0.380913 | 4_1:-26096411 | Msa0541990:CDS |
| TAATGGGGAGAACAAGTTCC+AGG | 0.400809 | 4_1:-26096786 | Msa0541990:CDS |
| CTGGTGAGAGAGTATGCTTC+AGG | 0.408630 | 4_1:-26096526 | Msa0541990:CDS |
| TTCTTAAAGCACTCACTCTC+AGG | 0.419431 | 4_1:+26096617 | None:intergenic |
| TAGGCTCTTCTGGTGAGAAA+TGG | 0.425803 | 4_1:-26096916 | Msa0541990:CDS |
| TGGTCTACCCCTCTTTCTCT+TGG | 0.432293 | 4_1:+26096655 | None:intergenic |
| GAGAAAATCCTGCTGGTGAG+AGG | 0.446423 | 4_1:-26096364 | Msa0541990:CDS |
| AGGATTTGGGTGAAGAGTTG+TGG | 0.456368 | 4_1:-26096961 | Msa0541990:CDS |
| CAGTTAACTAAAATAACAAC+TGG | 0.461802 | 4_1:+26096257 | None:intergenic |
| AGGCTCTTCTGGTGAGAAAT+GGG | 0.468490 | 4_1:-26096915 | Msa0541990:CDS |
| ACATTTATCTGCAAATTGGT+TGG | 0.488288 | 4_1:-26096865 | Msa0541990:CDS |
| TTCTTCGCAATCATCAAAGA+AGG | 0.488553 | 4_1:-26097605 | Msa0541990:CDS |
| ATTGTGGTTAAGAGAAATGA+TGG | 0.499727 | 4_1:-26096569 | Msa0541990:CDS |
| TCTTGTACATTCTTGAAGCA+TGG | 0.500756 | 4_1:+26096731 | None:intergenic |
| AGTACCACAAGAGATTGTTA+AGG | 0.512474 | 4_1:-26096981 | Msa0541990:CDS |
| CGAAGAAGGATGGTTTGTCT+TGG | 0.520720 | 4_1:+26097621 | None:intergenic |
| TTGATGATTGCGAAGAAGGA+TGG | 0.531272 | 4_1:+26097611 | None:intergenic |
| ATGCATACCCTCTCACCAGC+AGG | 0.531521 | 4_1:+26096356 | None:intergenic |
| TAATCGCGGCCAAGAGAAAG+AGG | 0.543608 | 4_1:-26096664 | Msa0541990:CDS |
| ACTAAAATAACAACTGGAGC+AGG | 0.545360 | 4_1:+26096263 | None:intergenic |
| AATCGTGGCTGAGAGAAAGA+AGG | 0.556974 | 4_1:-26096303 | Msa0541990:CDS |
| GCAGCAACAATCATGTCTAT+GGG | 0.564847 | 4_1:-26096488 | Msa0541990:CDS |
| AGGCTTGAACATCAACCGCC+TGG | 0.566829 | 4_1:-26097585 | Msa0541990:intron |
| AATGCATTAATTATTCTGGT+AGG | 0.572311 | 4_1:-26096935 | Msa0541990:CDS |
| AAGCATACTCTCTCACCAGC+AGG | 0.573273 | 4_1:+26096530 | None:intergenic |
| TGCAGCAGCTCCAATAATCG+CGG | 0.576668 | 4_1:-26096678 | Msa0541990:CDS |
| AGAAAATCCTGCTGGTGAGA+GGG | 0.595818 | 4_1:-26096363 | Msa0541990:CDS |
| ATTGATGGCTGCGATAAACA+AGG | 0.598401 | 4_1:-26096396 | Msa0541990:CDS |
| AGAACAAGAGAAAATCCTGC+TGG | 0.600152 | 4_1:-26096371 | Msa0541990:CDS |
| AATCGCGGCCAAGAGAAAGA+GGG | 0.619676 | 4_1:-26096663 | Msa0541990:CDS |
| ATCGTGGCTGAGAGAAAGAA+GGG | 0.634544 | 4_1:-26096302 | Msa0541990:CDS |
| AAATCCTTAACAATCTCTTG+TGG | 0.638832 | 4_1:+26096977 | None:intergenic |
| ATCGCGGCCAAGAGAAAGAG+GGG | 0.679157 | 4_1:-26096662 | Msa0541990:CDS |
| AAAATCTGCAGAAACAATCG+TGG | 0.680787 | 4_1:-26096318 | Msa0541990:CDS |
| TTGATGGCTGCGATAAACAA+GGG | 0.688503 | 4_1:-26096395 | Msa0541990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTGTTTCTTATTATTAACA+AGG | + | chr4_1:26096407-26096426 | None:intergenic | 20.0% |
| !!! | TGAAAAGTGAGTTTTTTTAA+AGG | - | chr4_1:26096469-26096488 | Msa0541990:CDS | 20.0% |
| !!! | TTTTAGTTATACATAGACAT+AGG | - | chr4_1:26096626-26096645 | Msa0541990:CDS | 20.0% |
| !!! | TTATTGGTTTTCACATATAA+TGG | - | chr4_1:26097088-26097107 | Msa0541990:intron | 20.0% |
| !!! | TATTGGTTTTCACATATAAT+GGG | - | chr4_1:26097089-26097108 | Msa0541990:intron | 20.0% |
| !! | AGTGTTTCTTATTATTAACA+AGG | + | chr4_1:26096407-26096426 | None:intergenic | 20.0% |
| !!! | TGAAAAGTGAGTTTTTTTAA+AGG | - | chr4_1:26096469-26096488 | Msa0541990:CDS | 20.0% |
| !!! | TTTTAGTTATACATAGACAT+AGG | - | chr4_1:26096626-26096645 | Msa0541990:CDS | 20.0% |
| !!! | TTATTGGTTTTCACATATAA+TGG | - | chr4_1:26097088-26097107 | Msa0541990:intron | 20.0% |
| !!! | TATTGGTTTTCACATATAAT+GGG | - | chr4_1:26097089-26097108 | Msa0541990:intron | 20.0% |
| ! | AGTACGAATAAATTATTACC+AGG | + | chr4_1:26096327-26096346 | None:intergenic | 25.0% |
| !! | TAAGAAACACTTTGTTTCTT+TGG | - | chr4_1:26096416-26096435 | Msa0541990:CDS | 25.0% |
| ! | GACGATGAAAACTAAATTAT+AGG | - | chr4_1:26096444-26096463 | Msa0541990:CDS | 25.0% |
| ! | TTTGTCTCTAGTAGATAAAT+CGG | + | chr4_1:26096585-26096604 | None:intergenic | 25.0% |
| ! | TTTATCTACTAGAGACAAAT+TGG | - | chr4_1:26096586-26096605 | Msa0541990:CDS | 25.0% |
| ! | TTATCTACTAGAGACAAATT+GGG | - | chr4_1:26096587-26096606 | Msa0541990:CDS | 25.0% |
| ! | GAAGAATGCATTAATTATTC+TGG | - | chr4_1:26096952-26096971 | Msa0541990:CDS | 25.0% |
| ! | AATGCATTAATTATTCTGGT+AGG | - | chr4_1:26096956-26096975 | Msa0541990:CDS | 25.0% |
| ! | AATGACATTTATCTGCAAAT+TGG | - | chr4_1:26097022-26097041 | Msa0541990:intron | 25.0% |
| !!! | ATTGGTTTTCACATATAATG+GGG | - | chr4_1:26097090-26097109 | Msa0541990:intron | 25.0% |
| !!! | AATTTTTGGTAAGAATGGAT+TGG | - | chr4_1:26097132-26097151 | Msa0541990:intron | 25.0% |
| ! | CAGTTAACTAAAATAACAAC+TGG | + | chr4_1:26097637-26097656 | None:intergenic | 25.0% |
| ! | AGTACGAATAAATTATTACC+AGG | + | chr4_1:26096327-26096346 | None:intergenic | 25.0% |
| !! | TAAGAAACACTTTGTTTCTT+TGG | - | chr4_1:26096416-26096435 | Msa0541990:CDS | 25.0% |
| ! | GACGATGAAAACTAAATTAT+AGG | - | chr4_1:26096444-26096463 | Msa0541990:CDS | 25.0% |
| ! | TTTGTCTCTAGTAGATAAAT+CGG | + | chr4_1:26096585-26096604 | None:intergenic | 25.0% |
| ! | TTTATCTACTAGAGACAAAT+TGG | - | chr4_1:26096586-26096605 | Msa0541990:CDS | 25.0% |
| ! | TTATCTACTAGAGACAAATT+GGG | - | chr4_1:26096587-26096606 | Msa0541990:CDS | 25.0% |
| ! | GAAGAATGCATTAATTATTC+TGG | - | chr4_1:26096952-26096971 | Msa0541990:CDS | 25.0% |
| ! | AATGCATTAATTATTCTGGT+AGG | - | chr4_1:26096956-26096975 | Msa0541990:CDS | 25.0% |
| ! | AATGACATTTATCTGCAAAT+TGG | - | chr4_1:26097022-26097041 | Msa0541990:intron | 25.0% |
| !!! | ATTGGTTTTCACATATAATG+GGG | - | chr4_1:26097090-26097109 | Msa0541990:intron | 25.0% |
| !!! | AATTTTTGGTAAGAATGGAT+TGG | - | chr4_1:26097132-26097151 | Msa0541990:intron | 25.0% |
| ! | CAGTTAACTAAAATAACAAC+TGG | + | chr4_1:26097637-26097656 | None:intergenic | 25.0% |
| ACGAATAAATTATTACCAGG+CGG | + | chr4_1:26096324-26096343 | None:intergenic | 30.0% | |
| AACAGAAAAATTACCAAGCT+TGG | + | chr4_1:26096737-26096756 | None:intergenic | 30.0% | |
| TTAGACTATTTGATCTCGAT+TGG | - | chr4_1:26096756-26096775 | Msa0541990:CDS | 30.0% | |
| !!! | GTCAAGCTACTATGTTTTTT+TGG | - | chr4_1:26096872-26096891 | Msa0541990:CDS | 30.0% |
| AAATCCTTAACAATCTCTTG+TGG | + | chr4_1:26096917-26096936 | None:intergenic | 30.0% | |
| ACAAGAGATTGTTAAGGATT+TGG | - | chr4_1:26096916-26096935 | Msa0541990:CDS | 30.0% | |
| CAAGAGATTGTTAAGGATTT+GGG | - | chr4_1:26096917-26096936 | Msa0541990:CDS | 30.0% | |
| !! | GAAGTGAGTATTTTGAAGAA+AGG | - | chr4_1:26096998-26097017 | Msa0541990:intron | 30.0% |
| ACATTTATCTGCAAATTGGT+TGG | - | chr4_1:26097026-26097045 | Msa0541990:intron | 30.0% | |
| !!! | GTGCAAATTTTTGGTAAGAA+TGG | - | chr4_1:26097127-26097146 | Msa0541990:intron | 30.0% |
| TGAAGTTGCAGAAAAAATTG+TGG | - | chr4_1:26097306-26097325 | Msa0541990:intron | 30.0% | |
| ATTGTGGTTAAGAGAAATGA+TGG | - | chr4_1:26097322-26097341 | Msa0541990:intron | 30.0% | |
| !!! | TGACGAACATGATTTTTTCT+TGG | + | chr4_1:26097433-26097452 | None:intergenic | 30.0% |
| ACGAATAAATTATTACCAGG+CGG | + | chr4_1:26096324-26096343 | None:intergenic | 30.0% | |
| AACAGAAAAATTACCAAGCT+TGG | + | chr4_1:26096737-26096756 | None:intergenic | 30.0% | |
| TTAGACTATTTGATCTCGAT+TGG | - | chr4_1:26096756-26096775 | Msa0541990:CDS | 30.0% | |
| !!! | GTCAAGCTACTATGTTTTTT+TGG | - | chr4_1:26096872-26096891 | Msa0541990:CDS | 30.0% |
| AAATCCTTAACAATCTCTTG+TGG | + | chr4_1:26096917-26096936 | None:intergenic | 30.0% | |
| ACAAGAGATTGTTAAGGATT+TGG | - | chr4_1:26096916-26096935 | Msa0541990:CDS | 30.0% | |
| CAAGAGATTGTTAAGGATTT+GGG | - | chr4_1:26096917-26096936 | Msa0541990:CDS | 30.0% | |
| !! | GAAGTGAGTATTTTGAAGAA+AGG | - | chr4_1:26096998-26097017 | Msa0541990:intron | 30.0% |
| ACATTTATCTGCAAATTGGT+TGG | - | chr4_1:26097026-26097045 | Msa0541990:intron | 30.0% | |
| !!! | GTGCAAATTTTTGGTAAGAA+TGG | - | chr4_1:26097127-26097146 | Msa0541990:intron | 30.0% |
| TGAAGTTGCAGAAAAAATTG+TGG | - | chr4_1:26097306-26097325 | Msa0541990:intron | 30.0% | |
| ATTGTGGTTAAGAGAAATGA+TGG | - | chr4_1:26097322-26097341 | Msa0541990:intron | 30.0% | |
| !!! | TGACGAACATGATTTTTTCT+TGG | + | chr4_1:26097433-26097452 | None:intergenic | 30.0% |
| ! | TTCTTTGATGATTGCGAAGA+AGG | + | chr4_1:26096287-26096306 | None:intergenic | 35.0% |
| TTCTTCGCAATCATCAAAGA+AGG | - | chr4_1:26096286-26096305 | Msa0541990:CDS | 35.0% | |
| ATGCACACATTCATGAAGTT+TGG | - | chr4_1:26096674-26096693 | Msa0541990:CDS | 35.0% | |
| AAAATTACCAAGCTTGGATC+TGG | + | chr4_1:26096731-26096750 | None:intergenic | 35.0% | |
| ACTATTTGATCTCGATTGGA+AGG | - | chr4_1:26096760-26096779 | Msa0541990:CDS | 35.0% | |
| ACATGTTATGCATATGAAGC+TGG | + | chr4_1:26096823-26096842 | None:intergenic | 35.0% | |
| AGTACCACAAGAGATTGTTA+AGG | - | chr4_1:26096910-26096929 | Msa0541990:CDS | 35.0% | |
| AGTGATGCTTGAAGAGTTAT+TGG | - | chr4_1:26097072-26097091 | Msa0541990:intron | 35.0% | |
| ! | AAGTTCCAGGTGCAAATTTT+TGG | - | chr4_1:26097118-26097137 | Msa0541990:intron | 35.0% |
| TCTTACCAAAAATTTGCACC+TGG | + | chr4_1:26097126-26097145 | None:intergenic | 35.0% | |
| TCTTGTACATTCTTGAAGCA+TGG | + | chr4_1:26097163-26097182 | None:intergenic | 35.0% | |
| ! | TCAGGAGAAAGAACTTTTCT+TGG | + | chr4_1:26097259-26097278 | None:intergenic | 35.0% |
| AAAATCTGCAGAAACAATCG+TGG | - | chr4_1:26097573-26097592 | Msa0541990:intron | 35.0% | |
| ACTAAAATAACAACTGGAGC+AGG | + | chr4_1:26097631-26097650 | None:intergenic | 35.0% | |
| ! | TTCTTTGATGATTGCGAAGA+AGG | + | chr4_1:26096287-26096306 | None:intergenic | 35.0% |
| TTCTTCGCAATCATCAAAGA+AGG | - | chr4_1:26096286-26096305 | Msa0541990:CDS | 35.0% | |
| ATGCACACATTCATGAAGTT+TGG | - | chr4_1:26096674-26096693 | Msa0541990:CDS | 35.0% | |
| AAAATTACCAAGCTTGGATC+TGG | + | chr4_1:26096731-26096750 | None:intergenic | 35.0% | |
| ACTATTTGATCTCGATTGGA+AGG | - | chr4_1:26096760-26096779 | Msa0541990:CDS | 35.0% | |
| ACATGTTATGCATATGAAGC+TGG | + | chr4_1:26096823-26096842 | None:intergenic | 35.0% | |
| AGTACCACAAGAGATTGTTA+AGG | - | chr4_1:26096910-26096929 | Msa0541990:CDS | 35.0% | |
| AGTGATGCTTGAAGAGTTAT+TGG | - | chr4_1:26097072-26097091 | Msa0541990:intron | 35.0% | |
| ! | AAGTTCCAGGTGCAAATTTT+TGG | - | chr4_1:26097118-26097137 | Msa0541990:intron | 35.0% |
| TCTTACCAAAAATTTGCACC+TGG | + | chr4_1:26097126-26097145 | None:intergenic | 35.0% | |
| TCTTGTACATTCTTGAAGCA+TGG | + | chr4_1:26097163-26097182 | None:intergenic | 35.0% | |
| ! | TCAGGAGAAAGAACTTTTCT+TGG | + | chr4_1:26097259-26097278 | None:intergenic | 35.0% |
| AAAATCTGCAGAAACAATCG+TGG | - | chr4_1:26097573-26097592 | Msa0541990:intron | 35.0% | |
| ACTAAAATAACAACTGGAGC+AGG | + | chr4_1:26097631-26097650 | None:intergenic | 35.0% | |
| ! | TTGATGATTGCGAAGAAGGA+TGG | + | chr4_1:26096283-26096302 | None:intergenic | 40.0% |
| GCATGAGATGATGATCATGT+GGG | + | chr4_1:26096367-26096386 | None:intergenic | 40.0% | |
| TGCATGAGATGATGATCATG+TGG | + | chr4_1:26096368-26096387 | None:intergenic | 40.0% | |
| ATAAATCGGCTGTTGAGCTA+AGG | + | chr4_1:26096571-26096590 | None:intergenic | 40.0% | |
| ATAGGAACCTGTATTCCCTT+TGG | - | chr4_1:26096644-26096663 | Msa0541990:CDS | 40.0% | |
| TGATCTCGATTGGAAGGTTA+CGG | - | chr4_1:26096766-26096785 | Msa0541990:CDS | 40.0% | |
| ATTATTCTGGTAGGCTCTTC+TGG | - | chr4_1:26096965-26096984 | Msa0541990:CDS | 40.0% | |
| ! | TTCTTAAAGCACTCACTCTC+AGG | + | chr4_1:26097277-26097296 | None:intergenic | 40.0% |
| AGAACAAGAAAAAGTCCTGC+TGG | - | chr4_1:26097346-26097365 | Msa0541990:intron | 40.0% | |
| TGCAGCAACAATCATGTCTA+TGG | - | chr4_1:26097402-26097421 | Msa0541990:intron | 40.0% | |
| GCAGCAACAATCATGTCTAT+GGG | - | chr4_1:26097403-26097422 | Msa0541990:intron | 40.0% | |
| ! | ATTGATGGCTGCGATAAACA+AGG | - | chr4_1:26097495-26097514 | Msa0541990:intron | 40.0% |
| ! | TTGATGGCTGCGATAAACAA+GGG | - | chr4_1:26097496-26097515 | Msa0541990:intron | 40.0% |
| AGAACAAGAGAAAATCCTGC+TGG | - | chr4_1:26097520-26097539 | Msa0541990:intron | 40.0% | |
| ! | ACTGGAGCAGGATATTTTCT+TGG | + | chr4_1:26097619-26097638 | None:intergenic | 40.0% |
| ! | TTGATGATTGCGAAGAAGGA+TGG | + | chr4_1:26096283-26096302 | None:intergenic | 40.0% |
| GCATGAGATGATGATCATGT+GGG | + | chr4_1:26096367-26096386 | None:intergenic | 40.0% | |
| TGCATGAGATGATGATCATG+TGG | + | chr4_1:26096368-26096387 | None:intergenic | 40.0% | |
| ATAAATCGGCTGTTGAGCTA+AGG | + | chr4_1:26096571-26096590 | None:intergenic | 40.0% | |
| ATAGGAACCTGTATTCCCTT+TGG | - | chr4_1:26096644-26096663 | Msa0541990:CDS | 40.0% | |
| TGATCTCGATTGGAAGGTTA+CGG | - | chr4_1:26096766-26096785 | Msa0541990:CDS | 40.0% | |
| ATTATTCTGGTAGGCTCTTC+TGG | - | chr4_1:26096965-26096984 | Msa0541990:CDS | 40.0% | |
| ! | TTCTTAAAGCACTCACTCTC+AGG | + | chr4_1:26097277-26097296 | None:intergenic | 40.0% |
| AGAACAAGAAAAAGTCCTGC+TGG | - | chr4_1:26097346-26097365 | Msa0541990:intron | 40.0% | |
| TGCAGCAACAATCATGTCTA+TGG | - | chr4_1:26097402-26097421 | Msa0541990:intron | 40.0% | |
| GCAGCAACAATCATGTCTAT+GGG | - | chr4_1:26097403-26097422 | Msa0541990:intron | 40.0% | |
| ! | ATTGATGGCTGCGATAAACA+AGG | - | chr4_1:26097495-26097514 | Msa0541990:intron | 40.0% |
| ! | TTGATGGCTGCGATAAACAA+GGG | - | chr4_1:26097496-26097515 | Msa0541990:intron | 40.0% |
| AGAACAAGAGAAAATCCTGC+TGG | - | chr4_1:26097520-26097539 | Msa0541990:intron | 40.0% | |
| ! | ACTGGAGCAGGATATTTTCT+TGG | + | chr4_1:26097619-26097638 | None:intergenic | 40.0% |
| ! | CGAAGAAGGATGGTTTGTCT+TGG | + | chr4_1:26096273-26096292 | None:intergenic | 45.0% |
| TCAGTGACCAAAGGGAATAC+AGG | + | chr4_1:26096654-26096673 | None:intergenic | 45.0% | |
| GTGTGCATTCAGTGACCAAA+GGG | + | chr4_1:26096662-26096681 | None:intergenic | 45.0% | |
| TGTGTGCATTCAGTGACCAA+AGG | + | chr4_1:26096663-26096682 | None:intergenic | 45.0% | |
| ATCCATGACCGTCCGAAAAA+TGG | - | chr4_1:26096699-26096718 | Msa0541990:CDS | 45.0% | |
| TCCATGACCGTCCGAAAAAT+GGG | - | chr4_1:26096700-26096719 | Msa0541990:CDS | 45.0% | |
| !! | ATCTGGACCACCCCATTTTT+CGG | + | chr4_1:26096714-26096733 | None:intergenic | 45.0% |
| TGCAAGCATTCACAAAGCCA+GGG | + | chr4_1:26096795-26096814 | None:intergenic | 45.0% | |
| !! | TGGCTTTGTGAATGCTTGCA+GGG | - | chr4_1:26096795-26096814 | Msa0541990:CDS | 45.0% |
| AGGATTTGGGTGAAGAGTTG+TGG | - | chr4_1:26096930-26096949 | Msa0541990:CDS | 45.0% | |
| TAGGCTCTTCTGGTGAGAAA+TGG | - | chr4_1:26096975-26096994 | Msa0541990:CDS | 45.0% | |
| AGGCTCTTCTGGTGAGAAAT+GGG | - | chr4_1:26096976-26096995 | Msa0541990:CDS | 45.0% | |
| TAATGGGGAGAACAAGTTCC+AGG | - | chr4_1:26097105-26097124 | Msa0541990:intron | 45.0% | |
| TTTCTCTTGGCCGCGATTAT+TGG | + | chr4_1:26097226-26097245 | None:intergenic | 45.0% | |
| CATCAATGTTGCTGCAGCTT+TGG | + | chr4_1:26097482-26097501 | None:intergenic | 45.0% | |
| CAAAGCTGCAGCAACATTGA+TGG | - | chr4_1:26097480-26097499 | Msa0541990:intron | 45.0% | |
| AGAAAATCCTGCTGGTGAGA+GGG | - | chr4_1:26097528-26097547 | Msa0541990:intron | 45.0% | |
| AATCGTGGCTGAGAGAAAGA+AGG | - | chr4_1:26097588-26097607 | Msa0541990:CDS | 45.0% | |
| ATCGTGGCTGAGAGAAAGAA+GGG | - | chr4_1:26097589-26097608 | Msa0541990:CDS | 45.0% | |
| ! | CGAAGAAGGATGGTTTGTCT+TGG | + | chr4_1:26096273-26096292 | None:intergenic | 45.0% |
| TCAGTGACCAAAGGGAATAC+AGG | + | chr4_1:26096654-26096673 | None:intergenic | 45.0% | |
| GTGTGCATTCAGTGACCAAA+GGG | + | chr4_1:26096662-26096681 | None:intergenic | 45.0% | |
| TGTGTGCATTCAGTGACCAA+AGG | + | chr4_1:26096663-26096682 | None:intergenic | 45.0% | |
| ATCCATGACCGTCCGAAAAA+TGG | - | chr4_1:26096699-26096718 | Msa0541990:CDS | 45.0% | |
| TCCATGACCGTCCGAAAAAT+GGG | - | chr4_1:26096700-26096719 | Msa0541990:CDS | 45.0% | |
| !! | ATCTGGACCACCCCATTTTT+CGG | + | chr4_1:26096714-26096733 | None:intergenic | 45.0% |
| TGCAAGCATTCACAAAGCCA+GGG | + | chr4_1:26096795-26096814 | None:intergenic | 45.0% | |
| !! | TGGCTTTGTGAATGCTTGCA+GGG | - | chr4_1:26096795-26096814 | Msa0541990:CDS | 45.0% |
| AGGATTTGGGTGAAGAGTTG+TGG | - | chr4_1:26096930-26096949 | Msa0541990:CDS | 45.0% | |
| TAGGCTCTTCTGGTGAGAAA+TGG | - | chr4_1:26096975-26096994 | Msa0541990:CDS | 45.0% | |
| AGGCTCTTCTGGTGAGAAAT+GGG | - | chr4_1:26096976-26096995 | Msa0541990:CDS | 45.0% | |
| TAATGGGGAGAACAAGTTCC+AGG | - | chr4_1:26097105-26097124 | Msa0541990:intron | 45.0% | |
| TTTCTCTTGGCCGCGATTAT+TGG | + | chr4_1:26097226-26097245 | None:intergenic | 45.0% | |
| CATCAATGTTGCTGCAGCTT+TGG | + | chr4_1:26097482-26097501 | None:intergenic | 45.0% | |
| CAAAGCTGCAGCAACATTGA+TGG | - | chr4_1:26097480-26097499 | Msa0541990:intron | 45.0% | |
| AGAAAATCCTGCTGGTGAGA+GGG | - | chr4_1:26097528-26097547 | Msa0541990:intron | 45.0% | |
| AATCGTGGCTGAGAGAAAGA+AGG | - | chr4_1:26097588-26097607 | Msa0541990:CDS | 45.0% | |
| ATCGTGGCTGAGAGAAAGAA+GGG | - | chr4_1:26097589-26097608 | Msa0541990:CDS | 45.0% | |
| CCATGACCGTCCGAAAAATG+GGG | - | chr4_1:26096701-26096720 | Msa0541990:CDS | 50.0% | |
| GCAAGCATTCACAAAGCCAG+GGG | + | chr4_1:26096794-26096813 | None:intergenic | 50.0% | |
| CTGCAAGCATTCACAAAGCC+AGG | + | chr4_1:26096796-26096815 | None:intergenic | 50.0% | |
| !! | CTGGCTTTGTGAATGCTTGC+AGG | - | chr4_1:26096794-26096813 | Msa0541990:CDS | 50.0% |
| TGCAGCAGCTCCAATAATCG+CGG | - | chr4_1:26097213-26097232 | Msa0541990:intron | 50.0% | |
| TAATCGCGGCCAAGAGAAAG+AGG | - | chr4_1:26097227-26097246 | Msa0541990:intron | 50.0% | |
| AATCGCGGCCAAGAGAAAGA+GGG | - | chr4_1:26097228-26097247 | Msa0541990:intron | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | + | chr4_1:26097239-26097258 | None:intergenic | 50.0% | |
| AAGCATACTCTCTCACCAGC+AGG | + | chr4_1:26097364-26097383 | None:intergenic | 50.0% | |
| ! | CTGGTGAGAGAGTATGCTTC+AGG | - | chr4_1:26097365-26097384 | Msa0541990:intron | 50.0% |
| GAGAAAATCCTGCTGGTGAG+AGG | - | chr4_1:26097527-26097546 | Msa0541990:intron | 50.0% | |
| CCATGACCGTCCGAAAAATG+GGG | - | chr4_1:26096701-26096720 | Msa0541990:CDS | 50.0% | |
| GCAAGCATTCACAAAGCCAG+GGG | + | chr4_1:26096794-26096813 | None:intergenic | 50.0% | |
| CTGCAAGCATTCACAAAGCC+AGG | + | chr4_1:26096796-26096815 | None:intergenic | 50.0% | |
| !! | CTGGCTTTGTGAATGCTTGC+AGG | - | chr4_1:26096794-26096813 | Msa0541990:CDS | 50.0% |
| TGCAGCAGCTCCAATAATCG+CGG | - | chr4_1:26097213-26097232 | Msa0541990:intron | 50.0% | |
| TAATCGCGGCCAAGAGAAAG+AGG | - | chr4_1:26097227-26097246 | Msa0541990:intron | 50.0% | |
| AATCGCGGCCAAGAGAAAGA+GGG | - | chr4_1:26097228-26097247 | Msa0541990:intron | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | + | chr4_1:26097239-26097258 | None:intergenic | 50.0% | |
| AAGCATACTCTCTCACCAGC+AGG | + | chr4_1:26097364-26097383 | None:intergenic | 50.0% | |
| ! | CTGGTGAGAGAGTATGCTTC+AGG | - | chr4_1:26097365-26097384 | Msa0541990:intron | 50.0% |
| GAGAAAATCCTGCTGGTGAG+AGG | - | chr4_1:26097527-26097546 | Msa0541990:intron | 50.0% | |
| AGGCTTGAACATCAACCGCC+TGG | - | chr4_1:26096306-26096325 | Msa0541990:CDS | 55.0% | |
| !! | CCCCATTTTTCGGACGGTCA+TGG | + | chr4_1:26096704-26096723 | None:intergenic | 55.0% |
| TGACCGTCCGAAAAATGGGG+TGG | - | chr4_1:26096704-26096723 | Msa0541990:CDS | 55.0% | |
| !! | GGACCACCCCATTTTTCGGA+CGG | + | chr4_1:26096710-26096729 | None:intergenic | 55.0% |
| TTGGAAGGTTACGGATCCCC+TGG | - | chr4_1:26096775-26096794 | Msa0541990:CDS | 55.0% | |
| ATCGCGGCCAAGAGAAAGAG+GGG | - | chr4_1:26097229-26097248 | Msa0541990:intron | 55.0% | |
| ATGCATACCCTCTCACCAGC+AGG | + | chr4_1:26097538-26097557 | None:intergenic | 55.0% | |
| AGGCTTGAACATCAACCGCC+TGG | - | chr4_1:26096306-26096325 | Msa0541990:CDS | 55.0% | |
| !! | CCCCATTTTTCGGACGGTCA+TGG | + | chr4_1:26096704-26096723 | None:intergenic | 55.0% |
| TGACCGTCCGAAAAATGGGG+TGG | - | chr4_1:26096704-26096723 | Msa0541990:CDS | 55.0% | |
| !! | GGACCACCCCATTTTTCGGA+CGG | + | chr4_1:26096710-26096729 | None:intergenic | 55.0% |
| TTGGAAGGTTACGGATCCCC+TGG | - | chr4_1:26096775-26096794 | Msa0541990:CDS | 55.0% | |
| ATCGCGGCCAAGAGAAAGAG+GGG | - | chr4_1:26097229-26097248 | Msa0541990:intron | 55.0% | |
| ATGCATACCCTCTCACCAGC+AGG | + | chr4_1:26097538-26097557 | None:intergenic | 55.0% | |
| GGGTGGTCCAGATCCAAGCT+TGG | - | chr4_1:26096721-26096740 | Msa0541990:CDS | 60.0% | |
| GGGTGGTCCAGATCCAAGCT+TGG | - | chr4_1:26096721-26096740 | Msa0541990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 26096256 | 26097657 | 26096256 | ID=Msa0541990;Name=Msa0541990 |
| chr4_1 | mRNA | 26096256 | 26097657 | 26096256 | ID=Msa0541990-mRNA-1;Parent=Msa0541990;Name=Msa0541990-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|273 |
| chr4_1 | exon | 26097586 | 26097657 | 26097586 | ID=Msa0541990-mRNA-1:exon:7113;Parent=Msa0541990-mRNA-1 |
| chr4_1 | exon | 26096256 | 26097005 | 26096256 | ID=Msa0541990-mRNA-1:exon:7112;Parent=Msa0541990-mRNA-1 |
| chr4_1 | CDS | 26097586 | 26097657 | 26097586 | ID=Msa0541990-mRNA-1:cds;Parent=Msa0541990-mRNA-1 |
| chr4_1 | CDS | 26096256 | 26097005 | 26096256 | ID=Msa0541990-mRNA-1:cds;Parent=Msa0541990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
