AlfalfaGEDB | Msa0542730

M. sativa cultivar zhongmu-4 / Msa0542730

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009909 GO:0009910 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542730	XP_013442871.1	99.163	239	2	0	1	239	1	239	9.44e-175	490

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542730	sp\|Q8GZA8\|ULT1_ARATH	74.890	227	57	0	13	239	11	237	5.68e-128	364

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542730	A0A072TI70	99.163	239	2	0	1	239	1	239	4.51e-175	490

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0542730	TF	ULT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542730	MtrunA17_Chr4g0022491	99.163	239	2	0	1	239	1	239	8.68e-179	490
Msa0542730	MtrunA17_Chr2g0323881	77.119	236	54	0	4	239	1	236	5.43e-139	389

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0542730	AT4G28190.1	74.890	227	57	0	13	239	11	237	5.77e-129	364
Msa0542730	AT4G28190.2	65.891	258	57	1	13	239	11	268	4.27e-122	348
Msa0542730	AT2G20825.1	69.643	224	62	1	16	239	10	227	8.57e-118	335

Showing 1 to 3 of 3 entries

Previous1Next

Find 67 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTTGCACGTTGGTGAT+CGG	0.474249	4_1:+28071275	None:intergenic
AAGAGCTGAGAGAAATGAGT+GGG	0.458242	4_1:-28075182	Msa0542730:CDS
AATATCTGGGTTATAATTAA+TGG	0.255756	4_1:-28073260	Msa0542730:CDS
AATATGTTGAAGTCACGTGT+GGG	0.722833	4_1:-28075143	Msa0542730:CDS
AATGGAGAATGGGTTGGAGA+AGG	0.494806	4_1:-28075232	Msa0542730:CDS
AATGGGTTGGAGAAGGGAAA+TGG	0.345803	4_1:-28075225	Msa0542730:CDS
AATGGTGATAAGGTTCCATT+GGG	0.489767	4_1:-28073242	Msa0542730:CDS
ACACAACGCTGTTGTTGTTG+AGG	0.570370	4_1:+28071149	None:intergenic
ACACAGCATCATGGTGAATG+CGG	0.634639	4_1:+28073063	None:intergenic
ACTCATCGCGGTGACCAACC+CGG	0.606791	4_1:+28073147	None:intergenic

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGTAAAATCAAAGTGTGAA+GGG	+	chr4_1:28071062-28071081	None:intergenic	30.0%
AGTGTAAAATCAAAGTGTGA+AGG	+	chr4_1:28071063-28071082	None:intergenic	30.0%
TTTATGGAGAAAATGGAGAA+TGG	-	chr4_1:28071121-28071140	Msa0542730:three_prime_UTR	30.0%
TTATGGAGAAAATGGAGAAT+GGG	-	chr4_1:28071122-28071141	Msa0542730:three_prime_UTR	30.0%
AACATAATGTAACCGTAGTA+AGG	-	chr4_1:28071846-28071865	Msa0542730:intron	30.0%
CATAGTGACTGAAAATTAAG+TGG	+	chr4_1:28072060-28072079	None:intergenic	30.0%
AAACATGACATTACGACATA+TGG	+	chr4_1:28072218-28072237	None:intergenic	30.0%
GTCGTAATGTCATGTTTATA+TGG	-	chr4_1:28072221-28072240	Msa0542730:intron	30.0%
GTAATGTCATGTTTATATGG+CGG	-	chr4_1:28072224-28072243	Msa0542730:intron	30.0%
TGACTAATTATTGAATGTGG+TGG	-	chr4_1:28072722-28072741	Msa0542730:intron	30.0%

Showing 1 to 10 of 275 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	28070965	28075421	28070965	ID=Msa0542730;Name=Msa0542730
chr4_1	mRNA	28070965	28075421	28070965	ID=Msa0542730-mRNA-1;Parent=Msa0542730;Name=Msa0542730-mRNA-1;_AED=0.05;_eAED=0.05;_QI=159\|1\|1\|1\|0.5\|0.66\|3\|215\|239
chr4_1	exon	28070965	28071354	28070965	ID=Msa0542730-mRNA-1:exon:7583;Parent=Msa0542730-mRNA-1
chr4_1	exon	28073023	28073347	28073023	ID=Msa0542730-mRNA-1:exon:7582;Parent=Msa0542730-mRNA-1
chr4_1	exon	28075043	28075421	28075043	ID=Msa0542730-mRNA-1:exon:7581;Parent=Msa0542730-mRNA-1
chr4_1	five_prime_UTR	28075263	28075421	28075263	ID=Msa0542730-mRNA-1:five_prime_utr;Parent=Msa0542730-mRNA-1
chr4_1	CDS	28075043	28075262	28075043	ID=Msa0542730-mRNA-1:cds;Parent=Msa0542730-mRNA-1
chr4_1	CDS	28073023	28073347	28073023	ID=Msa0542730-mRNA-1:cds;Parent=Msa0542730-mRNA-1
chr4_1	CDS	28071180	28071354	28071180	ID=Msa0542730-mRNA-1:cds;Parent=Msa0542730-mRNA-1
chr4_1	three_prime_UTR	28070965	28071179	28070965	ID=Msa0542730-mRNA-1:three_prime_utr;Parent=Msa0542730-mRNA-1

Gene Sequence

>Msa0542730

ATGGAGAAAATGGAGAATGGGTTGGAGAAGGGAAATGGGTTGTCAATGTTTAGCGAGGAAGAGCTGAGAGAAATGAGTGGGGTTAGTGTTTTTGATGAATATGTTGAAGTCACGTGTGGGTGTACTAGTCATAGATATGGTGATGCTGTTGGTAGACTTAGGGTTTTTCTTAGTGGCTATCTTCAAATTATTTGTGAATGCACTCCTGGTTGTGATGAAGACAAGTTGACACCTGCTGCATTTGAGAAACACTCTGGAAGAGAGACAGCAAGGAAATGGAAGAATAATATCTGGGTTATAATTAATGGTGATAAGGTTCCATTGGGTAAAACAGTGCTGCTCAAATACTACAATCAAGTGGCGAAAGCTGCTAATGGCTCTCAGAGATCCCAAAATGGCCGGGTTGGTCACCGCGATGAGTTTGTTCGCTGTACTAGGTGCAACAAAGAGCGTAGATTTCGTCTGAGATCTAAAGAGGAATGCCGCATTCACCATGATGCTGTGTCAGATGCAAATTGGAAATGTTCTGATCTTCCATATGAGAAGATAGCATGTGATGATGAAGAAGAACGAGGAAGTCGAAGAGTTTACAGAGGATGCGGCCGATCACCAACGTGCAAAGGTTGCACTTCTTGTGTGTGCTTCGGGTGTGACATCTGCCGTTTTTCAGATTGCAACTGCCAGACTTGTACTGACTTTACCAGCAATGTAAAAGCTTGA

Protein sequence

>Msa0542730

MEKMENGLEKGNGLSMFSEEELREMSGVSVFDEYVEVTCGCTSHRYGDAVGRLRVFLSGYLQIICECTPGCDEDKLTPAAFEKHSGRETARKWKNNIWVIINGDKVPLGKTVLLKYYNQVAKAANGSQRSQNGRVGHRDEFVRCTRCNKERRFRLRSKEECRIHHDAVSDANWKCSDLPYEKIACDDEEERGSRRVYRGCGRSPTCKGCTSCVCFGCDICRFSDCNCQTCTDFTSNVKA*