Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543030 | KEH26852.1 | 49.398 | 83 | 42 | 0 | 128 | 210 | 64 | 146 | 1.80e-17 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543030 | A0A072UB72 | 49.398 | 83 | 42 | 0 | 128 | 210 | 64 | 146 | 8.59e-18 | 90.1 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0543030 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543030 | MtrunA17_Chr4g0034781 | 27.778 | 198 | 113 | 4 | 6 | 197 | 30 | 203 | 1.19e-17 | 78.2 |
| Msa0543030 | MtrunA17_Chr4g0044671 | 27.749 | 191 | 112 | 3 | 11 | 197 | 41 | 209 | 1.36e-17 | 78.2 |
| Msa0543030 | MtrunA17_Chr6g0459981 | 33.058 | 121 | 69 | 4 | 79 | 199 | 41 | 149 | 4.02e-15 | 70.5 |
| Msa0543030 | MtrunA17_Chr2g0281511 | 25.424 | 118 | 86 | 1 | 91 | 208 | 4 | 119 | 3.59e-12 | 61.2 |
| Msa0543030 | MtrunA17_Chr5g0430431 | 33.333 | 105 | 61 | 1 | 107 | 211 | 165 | 260 | 1.13e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTTCATTAAACTTTAA+TGG | 0.143690 | 4_1:+28459828 | None:intergenic |
| CACGTTGATGGAAATCTTAT+TGG | 0.251945 | 4_1:+28457092 | None:intergenic |
| GCAAGCTTATTACTTCTAAC+AGG | 0.255633 | 4_1:-28457008 | Msa0543030:CDS |
| TTTCCTAGATATTTCTCATT+AGG | 0.287389 | 4_1:+28456982 | None:intergenic |
| ACGTTGATGGAAATCTTATT+GGG | 0.339296 | 4_1:+28457093 | None:intergenic |
| GATTTCCATCAACGTGCTTC+CGG | 0.346910 | 4_1:-28457085 | Msa0543030:CDS |
| CCTAGTTTCTAAGATTGTTT+CGG | 0.365478 | 4_1:+28456860 | None:intergenic |
| TTTGCGAAGTGGTACAAATC+AGG | 0.368550 | 4_1:+28457253 | None:intergenic |
| AGAAATATCTAGGAAAAGAT+TGG | 0.396794 | 4_1:-28456975 | Msa0543030:CDS |
| TATATCCGGAAGCACGTTGA+TGG | 0.427147 | 4_1:+28457080 | None:intergenic |
| CCGAAACAATCTTAGAAACT+AGG | 0.460846 | 4_1:-28456860 | None:intergenic |
| GGTCCTAATGAGAAATATCT+AGG | 0.463934 | 4_1:-28456985 | Msa0543030:CDS |
| TTGAGTCCATCCATCGGATA+AGG | 0.474967 | 4_1:+28459794 | None:intergenic |
| GTTATGTTGTGTTGTATATC+CGG | 0.479046 | 4_1:+28457066 | None:intergenic |
| ATCAATCCTACCTTATCCGA+TGG | 0.499883 | 4_1:-28459804 | Msa0543030:CDS |
| TTATAATTGCCCATGGATCT+CGG | 0.506151 | 4_1:+28459871 | None:intergenic |
| GGCAATTATAAATGAGGATG+GGG | 0.509069 | 4_1:-28459859 | Msa0543030:CDS |
| ATCATACAATCCGAGATCCA+TGG | 0.514273 | 4_1:-28459881 | Msa0543030:CDS |
| ACAACATAACATTGGTGGAA+TGG | 0.514507 | 4_1:-28457053 | Msa0543030:CDS |
| TCAAAACACAACTATTAAGC+AGG | 0.519614 | 4_1:-28457326 | Msa0543030:CDS |
| TCCTCATTTATAATTGCCCA+TGG | 0.531531 | 4_1:+28459864 | None:intergenic |
| CAGACTGACATCTCAGATGA+TGG | 0.535520 | 4_1:-28457206 | Msa0543030:intron |
| ATCTCAACAAATAATGACTT+CGG | 0.550533 | 4_1:+28456886 | None:intergenic |
| ATCCTACCTTATCCGATGGA+TGG | 0.553176 | 4_1:-28459800 | Msa0543030:CDS |
| ACAACACAACATAACATTGG+TGG | 0.555193 | 4_1:-28457058 | Msa0543030:CDS |
| CAAGCTTATTACTTCTAACA+GGG | 0.557318 | 4_1:-28457007 | Msa0543030:CDS |
| AAGACAACAAACTACGTGAA+GGG | 0.567819 | 4_1:-28456939 | Msa0543030:CDS |
| TCATACAATCCGAGATCCAT+GGG | 0.574749 | 4_1:-28459880 | Msa0543030:CDS |
| TGGGCAATTATAAATGAGGA+TGG | 0.575496 | 4_1:-28459861 | Msa0543030:CDS |
| GGGCAATTATAAATGAGGAT+GGG | 0.576626 | 4_1:-28459860 | Msa0543030:CDS |
| TCCATGGGCAATTATAAATG+AGG | 0.580533 | 4_1:-28459865 | Msa0543030:CDS |
| AGACAACAAACTACGTGAAG+GGG | 0.602128 | 4_1:-28456938 | Msa0543030:CDS |
| TATACAACACAACATAACAT+TGG | 0.610542 | 4_1:-28457061 | Msa0543030:CDS |
| AAAGACAACAAACTACGTGA+AGG | 0.614715 | 4_1:-28456940 | Msa0543030:CDS |
| TCAACAAATAATGACTTCGG+AGG | 0.642968 | 4_1:+28456889 | None:intergenic |
| CGTTGATGGAAATCTTATTG+GGG | 0.649514 | 4_1:+28457094 | None:intergenic |
| AAACACAACTATTAAGCAGG+AGG | 0.650758 | 4_1:-28457323 | Msa0543030:CDS |
| CAATAGGTTCAAGATAGCTG+TGG | 0.670418 | 4_1:-28457371 | Msa0543030:intron |
| GTCCATCCATCGGATAAGGT+AGG | 0.681744 | 4_1:+28459798 | None:intergenic |
| GCAATTATAAATGAGGATGG+GGG | 0.700766 | 4_1:-28459858 | Msa0543030:CDS |
| AAGCTTATTACTTCTAACAG+GGG | 0.718500 | 4_1:-28457006 | Msa0543030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATTTTTTTTTTAAA+TGG | + | chr4_1:28459115-28459134 | None:intergenic | 0.0% |
| !! | ACAATTATGTATATATAAAT+AGG | - | chr4_1:28456981-28457000 | Msa0543030:CDS | 10.0% |
| !!! | ATAATTGATTTCATATTTTT+AGG | + | chr4_1:28457721-28457740 | None:intergenic | 10.0% |
| !!! | ACTTTAATTTTGTAATATTT+TGG | - | chr4_1:28458929-28458948 | Msa0543030:intron | 10.0% |
| !! | TAATATTTATATCATATGAA+TGG | - | chr4_1:28460366-28460385 | Msa0543030:intron | 10.0% |
| !! | TTTATATATACATAATTGTG+TGG | + | chr4_1:28456980-28456999 | None:intergenic | 15.0% |
| !! | GTTTATTTATACTACAATAT+AGG | + | chr4_1:28457953-28457972 | None:intergenic | 15.0% |
| !! | AAACTTTCATTAAACTTTAA+TGG | + | chr4_1:28458287-28458306 | None:intergenic | 15.0% |
| !!! | TTTTGCATAAATTCTTATTT+GGG | + | chr4_1:28459214-28459233 | None:intergenic | 15.0% |
| !!! | AAAGTTATGTGATTATTTTA+GGG | + | chr4_1:28459696-28459715 | None:intergenic | 15.0% |
| !!! | TAAAGTTATGTGATTATTTT+AGG | + | chr4_1:28459697-28459716 | None:intergenic | 15.0% |
| !!! | ATATTTTAGAATATAACCAT+TGG | + | chr4_1:28460484-28460503 | None:intergenic | 15.0% |
| !! | AGCAATATGTAATTTCTTAT+TGG | - | chr4_1:28457019-28457038 | Msa0543030:CDS | 20.0% |
| !!! | ACTTCAAAGAAATTTTTAGT+TGG | + | chr4_1:28457461-28457480 | None:intergenic | 20.0% |
| !! | AATATAGGTAAATAAGTGAT+AGG | + | chr4_1:28457938-28457957 | None:intergenic | 20.0% |
| !!! | ATAACTGAAAAAGTATGAAT+TGG | + | chr4_1:28458083-28458102 | None:intergenic | 20.0% |
| !!! | ATAAAATTTTCTACGAAAGT+TGG | + | chr4_1:28458213-28458232 | None:intergenic | 20.0% |
| !!! | TCTCATTTTCTTTTAAACTA+CGG | + | chr4_1:28458469-28458488 | None:intergenic | 20.0% |
| !!! | TACAAATTTTCTAAAGTTGT+GGG | + | chr4_1:28458634-28458653 | None:intergenic | 20.0% |
| !!! | TTACAAATTTTCTAAAGTTG+TGG | + | chr4_1:28458635-28458654 | None:intergenic | 20.0% |
| !!! | ACAACTTTAGAAAATTTGTA+AGG | - | chr4_1:28458634-28458653 | Msa0543030:intron | 20.0% |
| !!! | CAACTTTAGAAAATTTGTAA+GGG | - | chr4_1:28458635-28458654 | Msa0543030:intron | 20.0% |
| !!! | ACAGATTTTTTTGTTTGAAA+TGG | + | chr4_1:28458829-28458848 | None:intergenic | 20.0% |
| !! | TACAGAATACGAAAATATAA+AGG | + | chr4_1:28458910-28458929 | None:intergenic | 20.0% |
| !! | TGACAAAGATAATATTTAGT+AGG | + | chr4_1:28458976-28458995 | None:intergenic | 20.0% |
| !! | TATCATATTAGTATTTGCAT+AGG | + | chr4_1:28459174-28459193 | None:intergenic | 20.0% |
| !!! | GTTTTGCATAAATTCTTATT+TGG | + | chr4_1:28459215-28459234 | None:intergenic | 20.0% |
| !!! | TAGTTATTCATTCTGATTTT+CGG | - | chr4_1:28459430-28459449 | Msa0543030:intron | 20.0% |
| !!! | AGATTTTCATCTTTTAGATA+TGG | - | chr4_1:28459496-28459515 | Msa0543030:intron | 20.0% |
| !!! | CTTTTAGATTATAAAACTGT+AGG | + | chr4_1:28459624-28459643 | None:intergenic | 20.0% |
| !!! | CTACAGTTTTATAATCTAAA+AGG | - | chr4_1:28459622-28459641 | Msa0543030:intron | 20.0% |
| !!! | ATAACTTTAATTTTGAGTAG+TGG | - | chr4_1:28459708-28459727 | Msa0543030:intron | 20.0% |
| !! | GTTCATATGAATTGAAATTT+AGG | - | chr4_1:28459750-28459769 | Msa0543030:CDS | 20.0% |
| !!! | AATAATCATTTTTATGCAGA+AGG | + | chr4_1:28460018-28460037 | None:intergenic | 20.0% |
| !!! | AAGAAAGAAACAAAAAGTTT+TGG | + | chr4_1:28460086-28460105 | None:intergenic | 20.0% |
| !! | GTGTACTTATACAAAATTAT+TGG | - | chr4_1:28460404-28460423 | Msa0543030:intron | 20.0% |
| !! | TAACAATATGAATCAGTTAA+TGG | + | chr4_1:28460981-28461000 | None:intergenic | 20.0% |
| ! | ATACATAATTGTGTGGAATA+AGG | + | chr4_1:28456973-28456992 | None:intergenic | 25.0% |
| !!! | TATATACATGTGTTGACTTA+AGG | - | chr4_1:28457233-28457252 | Msa0543030:CDS | 25.0% |
| ! | TATCTCTATATATGCTCAAT+AGG | - | chr4_1:28457383-28457402 | Msa0543030:intron | 25.0% |
| ! | CAATCGTATAGACAAATATT+AGG | - | chr4_1:28457429-28457448 | Msa0543030:intron | 25.0% |
| ! | ACATTTGATTACATTAGTGA+TGG | + | chr4_1:28457500-28457519 | None:intergenic | 25.0% |
| ! | TACAGTGATATTGAAACAAA+TGG | + | chr4_1:28457625-28457644 | None:intergenic | 25.0% |
| !!! | GAACTATACAATTTTAAGTG+TGG | + | chr4_1:28457897-28457916 | None:intergenic | 25.0% |
| !!! | TACTTTTTCAGTTATTCGTT+TGG | - | chr4_1:28458088-28458107 | Msa0543030:intron | 25.0% |
| !!! | AAAAGAACTTCATCGTTTTT+CGG | - | chr4_1:28458343-28458362 | Msa0543030:intron | 25.0% |
| ! | GAATTTAACCAATATTTCAC+TGG | + | chr4_1:28458531-28458550 | None:intergenic | 25.0% |
| !!! | ACAAATTTTCTAAAGTTGTG+GGG | + | chr4_1:28458633-28458652 | None:intergenic | 25.0% |
| ! | TCAAATACTAAAATGCAAGA+GGG | + | chr4_1:28458860-28458879 | None:intergenic | 25.0% |
| ! | TTCAAATACTAAAATGCAAG+AGG | + | chr4_1:28458861-28458880 | None:intergenic | 25.0% |
| ! | AACAATTTCTTATTCACTAC+AGG | - | chr4_1:28459024-28459043 | Msa0543030:intron | 25.0% |
| ! | ACAATTTCTTATTCACTACA+GGG | - | chr4_1:28459025-28459044 | Msa0543030:intron | 25.0% |
| ! | TCACCATAAACATATTATAC+AGG | + | chr4_1:28459052-28459071 | None:intergenic | 25.0% |
| ! | GGATAAGAAAGTTATGAATT+AGG | + | chr4_1:28459148-28459167 | None:intergenic | 25.0% |
| ! | CATTGAAAATTATGAGATTG+AGG | + | chr4_1:28459472-28459491 | None:intergenic | 25.0% |
| !! | AGGTTTTACATAGTAAAGTT+AGG | - | chr4_1:28459642-28459661 | Msa0543030:intron | 25.0% |
| ! | GGTCAAAATTATGATCATAT+AGG | + | chr4_1:28459675-28459694 | None:intergenic | 25.0% |
| ! | TTGAAACAATAGAGAATTAC+AGG | + | chr4_1:28459812-28459831 | None:intergenic | 25.0% |
| ! | AAACAAAATCAGCAAAGTTT+AGG | + | chr4_1:28459872-28459891 | None:intergenic | 25.0% |
| ! | ATAAATGGGACAAATTAACT+CGG | + | chr4_1:28459986-28460005 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTTCTTTCTTTTC+AGG | - | chr4_1:28460089-28460108 | Msa0543030:intron | 25.0% |
| !! | AAATGAGAAACTGATTTACT+TGG | + | chr4_1:28460164-28460183 | None:intergenic | 25.0% |
| ! | AAGCGAATTCACAAAATTAT+TGG | - | chr4_1:28460249-28460268 | Msa0543030:intron | 25.0% |
| ! | TATATTCTACTTCTTTCCAA+TGG | - | chr4_1:28460465-28460484 | Msa0543030:intron | 25.0% |
| ! | ATGAAATAAGTGTAAGAGTA+AGG | - | chr4_1:28460611-28460630 | Msa0543030:intron | 25.0% |
| !! | AACCAAAATTTTATCACATC+TGG | - | chr4_1:28460649-28460668 | Msa0543030:intron | 25.0% |
| !! | TACCAGATGTGATAAAATTT+TGG | + | chr4_1:28460654-28460673 | None:intergenic | 25.0% |
| ! | AAAGTTAGATTCGAATTTAC+CGG | - | chr4_1:28460712-28460731 | Msa0543030:intron | 25.0% |
| ! | AATTTACCGGTAAATTCAAT+AGG | - | chr4_1:28460725-28460744 | Msa0543030:intron | 25.0% |
| ! | GAATATAAAAGTAGTAGTGT+AGG | + | chr4_1:28460941-28460960 | None:intergenic | 25.0% |
| ! | TATACAACACAACATAACAT+TGG | - | chr4_1:28461051-28461070 | Msa0543030:intron | 25.0% |
| !!! | CTTGCATTCATATTGTTTTT+GGG | + | chr4_1:28461089-28461108 | None:intergenic | 25.0% |
| ! | TTTCCTAGATATTTCTCATT+AGG | + | chr4_1:28461133-28461152 | None:intergenic | 25.0% |
| ! | AGAAATATCTAGGAAAAGAT+TGG | - | chr4_1:28461137-28461156 | Msa0543030:intron | 25.0% |
| ! | ATCTCAACAAATAATGACTT+CGG | + | chr4_1:28461229-28461248 | None:intergenic | 25.0% |
| GATAACTACAAACCAAACAA+CGG | + | chr4_1:28457059-28457078 | None:intergenic | 30.0% | |
| TTGATTACATTAGTGATGGT+TGG | + | chr4_1:28457496-28457515 | None:intergenic | 30.0% | |
| !! | AAGCTTGGTGAAATTTGTTA+AGG | + | chr4_1:28457985-28458004 | None:intergenic | 30.0% |
| ! | TGTTCAAGTTTCTAAAAGCT+TGG | + | chr4_1:28458000-28458019 | None:intergenic | 30.0% |
| !! | TATCAAACTTTTTCTCCAGA+AGG | - | chr4_1:28458055-28458074 | Msa0543030:intron | 30.0% |
| !! | TTTTAATTGAGTCCATCCAT+CGG | + | chr4_1:28458327-28458346 | None:intergenic | 30.0% |
| !! | GATAATGTTGAAGTCGTTTT+TGG | - | chr4_1:28458365-28458384 | Msa0543030:intron | 30.0% |
| GCTATGAAAACTTGGAAATT+CGG | + | chr4_1:28458447-28458466 | None:intergenic | 30.0% | |
| ! | AAAACTGAAAGAAGTGGTTT+TGG | + | chr4_1:28458701-28458720 | None:intergenic | 30.0% |
| TGTAAACTTTAGTACGAACT+TGG | - | chr4_1:28458734-28458753 | Msa0543030:intron | 30.0% | |
| GTAAACTTTAGTACGAACTT+GGG | - | chr4_1:28458735-28458754 | Msa0543030:intron | 30.0% | |
| ! | TAGATGGAAAGATTTTTGCA+AGG | - | chr4_1:28458761-28458780 | Msa0543030:intron | 30.0% |
| GGTCCTGTATAATATGTTTA+TGG | - | chr4_1:28459046-28459065 | Msa0543030:intron | 30.0% | |
| TATTAGTATTTGCATAGGTG+TGG | + | chr4_1:28459169-28459188 | None:intergenic | 30.0% | |
| ! | TTTGGGATAAACTTTCTCAA+GGG | + | chr4_1:28459197-28459216 | None:intergenic | 30.0% |
| ! | ATTTGGGATAAACTTTCTCA+AGG | + | chr4_1:28459198-28459217 | None:intergenic | 30.0% |
| !! | AGTTAATGGGCTTAGTTATT+GGG | + | chr4_1:28459237-28459256 | None:intergenic | 30.0% |
| TGTCTTTCTCTTGAGTTAAT+GGG | + | chr4_1:28459250-28459269 | None:intergenic | 30.0% | |
| TTGTCTTTCTCTTGAGTTAA+TGG | + | chr4_1:28459251-28459270 | None:intergenic | 30.0% | |
| TAAATGGGACAAATTAACTC+GGG | + | chr4_1:28459985-28460004 | None:intergenic | 30.0% | |
| GAAAGATTATCATGTGTTTG+AGG | - | chr4_1:28460188-28460207 | Msa0543030:intron | 30.0% | |
| ! | TTTTGTGAATTCGCTTTAGT+TGG | + | chr4_1:28460245-28460264 | None:intergenic | 30.0% |
| TTGTCATATATAAACAGAGC+AGG | + | chr4_1:28460285-28460304 | None:intergenic | 30.0% | |
| AGTAGTGTTCAATGAATTCA+TGG | + | chr4_1:28460546-28460565 | None:intergenic | 30.0% | |
| TAAAGAAACATCCTTATGCA+TGG | - | chr4_1:28460575-28460594 | Msa0543030:intron | 30.0% | |
| ATAAGTGTAAGAGTAAGGTT+CGG | - | chr4_1:28460616-28460635 | Msa0543030:intron | 30.0% | |
| AATTCGAATCTAACTTTCGT+TGG | + | chr4_1:28460709-28460728 | None:intergenic | 30.0% | |
| CTTGAACCTATTGAATTTAC+CGG | + | chr4_1:28460734-28460753 | None:intergenic | 30.0% | |
| TCAAAACACAACTATTAAGC+AGG | - | chr4_1:28460786-28460805 | Msa0543030:intron | 30.0% | |
| ! | ACGTTGATGGAAATCTTATT+GGG | + | chr4_1:28461022-28461041 | None:intergenic | 30.0% |
| GTTATGTTGTGTTGTATATC+CGG | + | chr4_1:28461049-28461068 | None:intergenic | 30.0% | |
| ! | GCTTGCATTCATATTGTTTT+TGG | + | chr4_1:28461090-28461109 | None:intergenic | 30.0% |
| CAAGCTTATTACTTCTAACA+GGG | - | chr4_1:28461105-28461124 | Msa0543030:intron | 30.0% | |
| AAGCTTATTACTTCTAACAG+GGG | - | chr4_1:28461106-28461125 | Msa0543030:intron | 30.0% | |
| ! | TTTCTTATTGGTGCTTAGAG+CGG | - | chr4_1:28457031-28457050 | Msa0543030:CDS | 35.0% |
| TGGAGAGGGAAAAAAAGTTA+TGG | + | chr4_1:28457566-28457585 | None:intergenic | 35.0% | |
| AAGTATGAATTGGATCCTTC+TGG | + | chr4_1:28458073-28458092 | None:intergenic | 35.0% | |
| AGTTATTCGTTTGGCATTTC+AGG | - | chr4_1:28458097-28458116 | Msa0543030:intron | 35.0% | |
| TTATAATTGCCCATGGATCT+CGG | + | chr4_1:28458244-28458263 | None:intergenic | 35.0% | |
| TCCATGGGCAATTATAAATG+AGG | - | chr4_1:28458247-28458266 | Msa0543030:intron | 35.0% | |
| TCCTCATTTATAATTGCCCA+TGG | + | chr4_1:28458251-28458270 | None:intergenic | 35.0% | |
| TGGGCAATTATAAATGAGGA+TGG | - | chr4_1:28458251-28458270 | Msa0543030:intron | 35.0% | |
| GGGCAATTATAAATGAGGAT+GGG | - | chr4_1:28458252-28458271 | Msa0543030:intron | 35.0% | |
| GGCAATTATAAATGAGGATG+GGG | - | chr4_1:28458253-28458272 | Msa0543030:intron | 35.0% | |
| GCAATTATAAATGAGGATGG+GGG | - | chr4_1:28458254-28458273 | Msa0543030:intron | 35.0% | |
| GTAATCATGTTCAGAGAAGT+TGG | - | chr4_1:28458413-28458432 | Msa0543030:intron | 35.0% | |
| AAACTACGGCTATGAAAACT+TGG | + | chr4_1:28458455-28458474 | None:intergenic | 35.0% | |
| ATTTCACTGGTGAAGTCATT+TGG | + | chr4_1:28458518-28458537 | None:intergenic | 35.0% | |
| TGACTTCACCAGTGAAATAT+TGG | - | chr4_1:28458520-28458539 | Msa0543030:intron | 35.0% | |
| GTGTGAAAAACTGAAAGAAG+TGG | + | chr4_1:28458707-28458726 | None:intergenic | 35.0% | |
| AAGGCAAATCATTACATACC+TGG | - | chr4_1:28458780-28458799 | Msa0543030:intron | 35.0% | |
| AGGCAAATCATTACATACCT+GGG | - | chr4_1:28458781-28458800 | Msa0543030:intron | 35.0% | |
| ! | TTGAATCTAATAGTTTGCCC+AGG | + | chr4_1:28458801-28458820 | None:intergenic | 35.0% |
| !! | GAGTTAATGGGCTTAGTTAT+TGG | + | chr4_1:28459238-28459257 | None:intergenic | 35.0% |
| GACAAGAGAAGCAAAACTAT+CGG | - | chr4_1:28459266-28459285 | Msa0543030:intron | 35.0% | |
| !! | TGGAGAGAAATCGATTTTTC+TGG | + | chr4_1:28459318-28459337 | None:intergenic | 35.0% |
| TTCAATGCATCACTAAGGTA+AGG | - | chr4_1:28459838-28459857 | Msa0543030:CDS | 35.0% | |
| GAAGGATGTGTGTCATAAAT+GGG | + | chr4_1:28460000-28460019 | None:intergenic | 35.0% | |
| AGAAGGATGTGTGTCATAAA+TGG | + | chr4_1:28460001-28460020 | None:intergenic | 35.0% | |
| ATCGATTGTTTATCCATACC+AGG | - | chr4_1:28460123-28460142 | Msa0543030:intron | 35.0% | |
| ATTCTATTGAGTACCTGGTA+TGG | + | chr4_1:28460139-28460158 | None:intergenic | 35.0% | |
| TCATCTATAAGCCATGCATA+AGG | + | chr4_1:28460589-28460608 | None:intergenic | 35.0% | |
| AAACACAACTATTAAGCAGG+AGG | - | chr4_1:28460789-28460808 | Msa0543030:intron | 35.0% | |
| TTTGTACCACTTCGCAAAAA+AGG | - | chr4_1:28460864-28460883 | Msa0543030:intron | 35.0% | |
| AAAAAAGGTCACTAAGCCTT+GGG | - | chr4_1:28460879-28460898 | Msa0543030:intron | 35.0% | |
| ! | CGTTGATGGAAATCTTATTG+GGG | + | chr4_1:28461021-28461040 | None:intergenic | 35.0% |
| ! | CACGTTGATGGAAATCTTAT+TGG | + | chr4_1:28461023-28461042 | None:intergenic | 35.0% |
| ACAACACAACATAACATTGG+TGG | - | chr4_1:28461054-28461073 | Msa0543030:intron | 35.0% | |
| ACAACATAACATTGGTGGAA+TGG | - | chr4_1:28461059-28461078 | Msa0543030:intron | 35.0% | |
| GCAAGCTTATTACTTCTAAC+AGG | - | chr4_1:28461104-28461123 | Msa0543030:intron | 35.0% | |
| GGTCCTAATGAGAAATATCT+AGG | - | chr4_1:28461127-28461146 | Msa0543030:intron | 35.0% | |
| AAAGACAACAAACTACGTGA+AGG | - | chr4_1:28461172-28461191 | Msa0543030:intron | 35.0% | |
| AAGACAACAAACTACGTGAA+GGG | - | chr4_1:28461173-28461192 | Msa0543030:intron | 35.0% | |
| TCAACAAATAATGACTTCGG+AGG | + | chr4_1:28461226-28461245 | None:intergenic | 35.0% | |
| CATATTGCTGCAACAACATG+TGG | + | chr4_1:28457008-28457027 | None:intergenic | 40.0% | |
| ACATTAACAGTCTCATGCAG+AGG | - | chr4_1:28458182-28458201 | Msa0543030:intron | 40.0% | |
| ATCATACAATCCGAGATCCA+TGG | - | chr4_1:28458231-28458250 | Msa0543030:intron | 40.0% | |
| TCATACAATCCGAGATCCAT+GGG | - | chr4_1:28458232-28458251 | Msa0543030:intron | 40.0% | |
| ATCAATCCTACCTTATCCGA+TGG | - | chr4_1:28458308-28458327 | Msa0543030:intron | 40.0% | |
| TGCTGAAGTGGAGAATAGTA+TGG | + | chr4_1:28459295-28459314 | None:intergenic | 40.0% | |
| AAAATGACGACCGATATCGA+AGG | - | chr4_1:28459380-28459399 | Msa0543030:intron | 40.0% | |
| TCGAACGTATCCTTCGATAT+CGG | + | chr4_1:28459393-28459412 | None:intergenic | 40.0% | |
| ! | TGACTTGCATGCATGAACAT+TGG | + | chr4_1:28459533-28459552 | None:intergenic | 40.0% |
| CAGCTTTCAATGCATCACTA+AGG | - | chr4_1:28459833-28459852 | Msa0543030:CDS | 40.0% | |
| TGGAGATTCTATTGAGTACC+TGG | + | chr4_1:28460144-28460163 | None:intergenic | 40.0% | |
| GTGAATTCGCTTTAGTTGGT+TGG | + | chr4_1:28460241-28460260 | None:intergenic | 40.0% | |
| CAATAGGTTCAAGATAGCTG+TGG | - | chr4_1:28460741-28460760 | Msa0543030:intron | 40.0% | |
| TTTGCGAAGTGGTACAAATC+AGG | + | chr4_1:28460862-28460881 | None:intergenic | 40.0% | |
| !!! | TAGTGACCTTTTTTGCGAAG+TGG | + | chr4_1:28460873-28460892 | None:intergenic | 40.0% |
| CAAAAAAGGTCACTAAGCCT+TGG | - | chr4_1:28460878-28460897 | Msa0543030:intron | 40.0% | |
| !! | TATTGGGGAAGTGCTAAAGA+GGG | + | chr4_1:28461006-28461025 | None:intergenic | 40.0% |
| !! | TTATTGGGGAAGTGCTAAAG+AGG | + | chr4_1:28461007-28461026 | None:intergenic | 40.0% |
| AGACAACAAACTACGTGAAG+GGG | - | chr4_1:28461174-28461193 | Msa0543030:intron | 40.0% | |
| !!! | ACTTTTTTTCCCTCTCCACC+AGG | - | chr4_1:28457568-28457587 | Msa0543030:intron | 45.0% |
| AGTCCTTGTGCATGTTATCC+TGG | + | chr4_1:28457589-28457608 | None:intergenic | 45.0% | |
| ATCCTACCTTATCCGATGGA+TGG | - | chr4_1:28458312-28458331 | Msa0543030:intron | 45.0% | |
| TTGAGTCCATCCATCGGATA+AGG | + | chr4_1:28458321-28458340 | None:intergenic | 45.0% | |
| GTACGAACTTGGGACTTAGA+TGG | - | chr4_1:28458745-28458764 | Msa0543030:intron | 45.0% | |
| !! | CGATTTTTCTGGTGCTGAAG+TGG | + | chr4_1:28459307-28459326 | None:intergenic | 45.0% |
| AAACGCTGCAAACGTGTTTC+TGG | + | chr4_1:28459338-28459357 | None:intergenic | 45.0% | |
| TAACTCGGGTAGCAACTTTG+AGG | + | chr4_1:28459971-28459990 | None:intergenic | 45.0% | |
| ATGTTGCAACAGCATTCCAG+TGG | - | chr4_1:28460677-28460696 | Msa0543030:intron | 45.0% | |
| !! | CTTTCGTTGGTTTGTTCCAC+TGG | + | chr4_1:28460696-28460715 | None:intergenic | 45.0% |
| ! | GATGTCAGTCTGTTTTCCCA+AGG | + | chr4_1:28460898-28460917 | None:intergenic | 45.0% |
| CAGACTGACATCTCAGATGA+TGG | - | chr4_1:28460906-28460925 | Msa0543030:intron | 45.0% | |
| GATTTCCATCAACGTGCTTC+CGG | - | chr4_1:28461027-28461046 | Msa0543030:intron | 45.0% | |
| ! | TATATCCGGAAGCACGTTGA+TGG | + | chr4_1:28461035-28461054 | None:intergenic | 45.0% |
| !! | TATATAAGTTATAATTAATT+AGG | + | chr4_1:28457219-28457238 | None:intergenic | 5.0% |
| CTTAGAGCGGTTCCGTTGTT+TGG | - | chr4_1:28457044-28457063 | Msa0543030:CDS | 50.0% | |
| GCATGTTATCCTGGTGGAGA+GGG | + | chr4_1:28457580-28457599 | None:intergenic | 50.0% | |
| TGCATGTTATCCTGGTGGAG+AGG | + | chr4_1:28457581-28457600 | None:intergenic | 50.0% | |
| CCTTGTGCATGTTATCCTGG+TGG | + | chr4_1:28457586-28457605 | None:intergenic | 50.0% | |
| CCACCAGGATAACATGCACA+AGG | - | chr4_1:28457583-28457602 | Msa0543030:intron | 50.0% | |
| GTCCATCCATCGGATAAGGT+AGG | + | chr4_1:28458317-28458336 | None:intergenic | 50.0% | |
| ! | CACGTTTGCAGCGTTTTCCT+TGG | - | chr4_1:28459342-28459361 | Msa0543030:intron | 50.0% |
| TTTGCATTCGCTGCTTGCCA+AGG | + | chr4_1:28459362-28459381 | None:intergenic | 50.0% | |
| ! | GGTAGCAACTTTGAGGACTG+AGG | + | chr4_1:28459964-28459983 | None:intergenic | 50.0% |
| ATCAGACTCTGCTGCGACGA+TGG | - | chr4_1:28458675-28458694 | Msa0543030:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 28456861 | 28461273 | 28456861 | ID=Msa0543030;Name=Msa0543030 |
| chr4_1 | mRNA | 28456861 | 28461273 | 28456861 | ID=Msa0543030-mRNA-1;Parent=Msa0543030;Name=Msa0543030-mRNA-1;_AED=0.71;_eAED=0.71;_QI=0|0|0|0.16|0.2|0.16|6|0|214 |
| chr4_1 | exon | 28461267 | 28461273 | 28461267 | ID=Msa0543030-mRNA-1:exon:7745;Parent=Msa0543030-mRNA-1 |
| chr4_1 | exon | 28460326 | 28460332 | 28460326 | ID=Msa0543030-mRNA-1:exon:7744;Parent=Msa0543030-mRNA-1 |
| chr4_1 | exon | 28459722 | 28459911 | 28459722 | ID=Msa0543030-mRNA-1:exon:7743;Parent=Msa0543030-mRNA-1 |
| chr4_1 | exon | 28459083 | 28459088 | 28459083 | ID=Msa0543030-mRNA-1:exon:7742;Parent=Msa0543030-mRNA-1 |
| chr4_1 | exon | 28457207 | 28457380 | 28457207 | ID=Msa0543030-mRNA-1:exon:7741;Parent=Msa0543030-mRNA-1 |
| chr4_1 | exon | 28456861 | 28457121 | 28456861 | ID=Msa0543030-mRNA-1:exon:7740;Parent=Msa0543030-mRNA-1 |
| chr4_1 | CDS | 28461267 | 28461273 | 28461267 | ID=Msa0543030-mRNA-1:cds;Parent=Msa0543030-mRNA-1 |
| chr4_1 | CDS | 28460326 | 28460332 | 28460326 | ID=Msa0543030-mRNA-1:cds;Parent=Msa0543030-mRNA-1 |
| chr4_1 | CDS | 28459722 | 28459911 | 28459722 | ID=Msa0543030-mRNA-1:cds;Parent=Msa0543030-mRNA-1 |
| chr4_1 | CDS | 28459083 | 28459088 | 28459083 | ID=Msa0543030-mRNA-1:cds;Parent=Msa0543030-mRNA-1 |
| chr4_1 | CDS | 28457207 | 28457380 | 28457207 | ID=Msa0543030-mRNA-1:cds;Parent=Msa0543030-mRNA-1 |
| chr4_1 | CDS | 28456861 | 28457121 | 28456861 | ID=Msa0543030-mRNA-1:cds;Parent=Msa0543030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
