Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543760 | XP_013455622.1 | 87.838 | 74 | 9 | 0 | 1 | 74 | 1 | 74 | 2.47e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543760 | sp|O22059|CPC_ARATH | 65.957 | 47 | 16 | 0 | 26 | 72 | 36 | 82 | 1.03e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543760 | A0A072UKM9 | 87.838 | 74 | 9 | 0 | 1 | 74 | 1 | 74 | 1.18e-39 | 134 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0543760 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543760 | MtrunA17_Chr4g0024181 | 87.838 | 74 | 9 | 0 | 1 | 74 | 1 | 74 | 2.27e-43 | 134 |
| Msa0543760 | MtrunA17_Chr2g0322831 | 70.000 | 50 | 15 | 0 | 24 | 73 | 30 | 79 | 4.25e-20 | 76.3 |
| Msa0543760 | MtrunA17_Chr2g0288361 | 49.333 | 75 | 35 | 2 | 1 | 73 | 1 | 74 | 5.28e-18 | 70.5 |
| Msa0543760 | MtrunA17_Chr5g0396771 | 65.217 | 46 | 16 | 0 | 26 | 71 | 37 | 82 | 5.89e-18 | 70.9 |
| Msa0543760 | MtrunA17_Chr7g0229101 | 57.143 | 42 | 18 | 0 | 27 | 68 | 29 | 70 | 4.52e-13 | 60.8 |
| Msa0543760 | MtrunA17_Chr4g0044421 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 1.19e-12 | 59.7 |
| Msa0543760 | MtrunA17_Chr4g0055981 | 63.415 | 41 | 15 | 0 | 28 | 68 | 113 | 153 | 2.52e-12 | 59.3 |
| Msa0543760 | MtrunA17_Chr4g0037141 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 3.01e-12 | 59.7 |
| Msa0543760 | MtrunA17_Chr8g0360111 | 58.537 | 41 | 17 | 0 | 28 | 68 | 83 | 123 | 3.48e-12 | 59.3 |
| Msa0543760 | MtrunA17_Chr5g0435101 | 56.098 | 41 | 18 | 0 | 28 | 68 | 69 | 109 | 3.78e-12 | 58.5 |
| Msa0543760 | MtrunA17_Chr7g0240821 | 54.545 | 44 | 20 | 0 | 28 | 71 | 59 | 102 | 4.32e-12 | 58.5 |
| Msa0543760 | MtrunA17_Chr3g0121241 | 57.143 | 42 | 18 | 0 | 27 | 68 | 99 | 140 | 6.24e-12 | 58.9 |
| Msa0543760 | MtrunA17_Chr4g0070641 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 8.27e-12 | 57.0 |
| Msa0543760 | MtrunA17_Chr4g0070611 | 57.500 | 40 | 16 | 1 | 29 | 68 | 72 | 110 | 1.18e-11 | 58.2 |
| Msa0543760 | MtrunA17_Chr7g0275911 | 57.143 | 42 | 17 | 1 | 30 | 71 | 73 | 113 | 2.19e-11 | 57.0 |
| Msa0543760 | MtrunA17_Chr7g0220341 | 56.098 | 41 | 18 | 0 | 28 | 68 | 85 | 125 | 2.22e-11 | 57.0 |
| Msa0543760 | MtrunA17_Chr8g0346561 | 56.098 | 41 | 18 | 0 | 28 | 68 | 70 | 110 | 2.28e-11 | 57.0 |
| Msa0543760 | MtrunA17_Chr3g0135311 | 50.000 | 42 | 21 | 0 | 28 | 69 | 71 | 112 | 6.68e-11 | 55.8 |
| Msa0543760 | MtrunA17_Chr1g0152011 | 52.381 | 42 | 20 | 0 | 28 | 69 | 71 | 112 | 6.77e-11 | 55.8 |
| Msa0543760 | MtrunA17_Chr5g0434901 | 51.220 | 41 | 20 | 0 | 28 | 68 | 31 | 71 | 6.92e-11 | 53.5 |
| Msa0543760 | MtrunA17_Chr7g0228991 | 51.220 | 41 | 20 | 0 | 28 | 68 | 87 | 127 | 8.02e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543760 | AT2G46410.1 | 65.957 | 47 | 16 | 0 | 26 | 72 | 36 | 82 | 1.05e-16 | 68.2 |
| Msa0543760 | AT1G01380.1 | 68.293 | 41 | 13 | 0 | 26 | 66 | 32 | 72 | 1.64e-15 | 64.7 |
| Msa0543760 | AT5G53200.1 | 58.696 | 46 | 19 | 0 | 26 | 71 | 31 | 76 | 4.49e-14 | 62.0 |
| Msa0543760 | AT4G01060.3 | 63.415 | 41 | 15 | 0 | 26 | 66 | 31 | 71 | 1.02e-13 | 60.1 |
| Msa0543760 | AT4G01060.1 | 63.415 | 41 | 15 | 0 | 26 | 66 | 33 | 73 | 1.08e-13 | 60.1 |
| Msa0543760 | AT4G01060.2 | 63.415 | 41 | 15 | 0 | 26 | 66 | 30 | 70 | 1.09e-13 | 60.1 |
| Msa0543760 | AT2G30420.1 | 56.522 | 46 | 20 | 0 | 26 | 71 | 38 | 83 | 1.83e-12 | 57.8 |
| Msa0543760 | AT1G22640.3 | 58.537 | 41 | 17 | 0 | 28 | 68 | 13 | 53 | 3.20e-12 | 58.9 |
| Msa0543760 | AT4G38620.1 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 4.81e-12 | 59.3 |
| Msa0543760 | AT1G22640.1 | 52.000 | 50 | 23 | 1 | 19 | 68 | 62 | 110 | 6.56e-12 | 58.9 |
| Msa0543760 | AT5G14750.4 | 52.273 | 44 | 21 | 0 | 28 | 71 | 13 | 56 | 1.06e-11 | 56.6 |
| Msa0543760 | AT5G14750.2 | 52.273 | 44 | 21 | 0 | 28 | 71 | 13 | 56 | 1.06e-11 | 56.6 |
| Msa0543760 | AT5G35550.2 | 62.500 | 40 | 14 | 1 | 29 | 68 | 77 | 115 | 1.56e-11 | 57.8 |
| Msa0543760 | AT3G49690.1 | 54.762 | 42 | 19 | 0 | 28 | 69 | 71 | 112 | 2.04e-11 | 57.8 |
| Msa0543760 | AT4G09460.1 | 51.220 | 41 | 20 | 0 | 28 | 68 | 70 | 110 | 2.16e-11 | 57.4 |
| Msa0543760 | AT5G14750.3 | 52.273 | 44 | 21 | 0 | 28 | 71 | 40 | 83 | 2.24e-11 | 56.2 |
| Msa0543760 | AT3G27920.1 | 50.000 | 48 | 24 | 0 | 24 | 71 | 68 | 115 | 2.56e-11 | 57.0 |
| Msa0543760 | AT3G13540.1 | 58.537 | 41 | 17 | 0 | 28 | 68 | 81 | 121 | 3.37e-11 | 56.6 |
| Msa0543760 | AT2G30432.1 | 52.174 | 46 | 22 | 0 | 26 | 71 | 33 | 78 | 3.84e-11 | 53.9 |
| Msa0543760 | AT5G14750.1 | 52.273 | 44 | 21 | 0 | 28 | 71 | 74 | 117 | 4.06e-11 | 56.2 |
| Msa0543760 | AT2G30424.1 | 50.000 | 46 | 23 | 0 | 26 | 71 | 34 | 79 | 5.24e-11 | 53.9 |
| Msa0543760 | AT5G65790.1 | 52.381 | 42 | 20 | 0 | 28 | 69 | 71 | 112 | 6.67e-11 | 56.2 |
Find 27 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAAATGCTTATTAAAA+TGG | 0.190572 | 4_1:+30793883 | Msa0543760:CDS |
| ATCTCTTCTGCTGTTCTTCC+AGG | 0.213845 | 4_1:-30794238 | None:intergenic |
| ACTACAAATATAGAAGAAAT+AGG | 0.233114 | 4_1:-30793470 | None:intergenic |
| AAATGGTTTATAATCTTGTT+GGG | 0.339232 | 4_1:+30793900 | Msa0543760:CDS |
| AAGTAAATTATTGTTAATAT+AGG | 0.342014 | 4_1:-30793520 | None:intergenic |
| TTGATTGCTGGAAGAATTCC+TGG | 0.342209 | 4_1:+30794220 | Msa0543760:CDS |
| TGAGTGGTGTATTAATATAT+AGG | 0.379554 | 4_1:-30793546 | None:intergenic |
| AAAATGGTTTATAATCTTGT+TGG | 0.380870 | 4_1:+30793899 | Msa0543760:CDS |
| CATAGGTGGTCATTGATTGC+TGG | 0.399125 | 4_1:+30794208 | Msa0543760:intron |
| TCAACCTTTGAACCTTGGTC+TGG | 0.418134 | 4_1:-30793848 | None:intergenic |
| CTACAAATATAGAAGAAATA+GGG | 0.428239 | 4_1:-30793469 | None:intergenic |
| AATCAAGATGTGGGAAACTA+TGG | 0.433656 | 4_1:-30793602 | None:intergenic |
| ATAGAAGAAATAGGGAAGAC+GGG | 0.441257 | 4_1:-30793461 | None:intergenic |
| AAAATTCAACCTTTGAACCT+TGG | 0.444402 | 4_1:-30793853 | None:intergenic |
| TTTCTTGATTCATTCATAGC+TGG | 0.462473 | 4_1:-30794305 | None:intergenic |
| TTTATAATCTTGTTGGGGAG+AGG | 0.507013 | 4_1:+30793906 | Msa0543760:CDS |
| CTATTTGATAATCAAGATGT+GGG | 0.528349 | 4_1:-30793611 | None:intergenic |
| TATAGAAGAAATAGGGAAGA+CGG | 0.528636 | 4_1:-30793462 | None:intergenic |
| TCTATTTGATAATCAAGATG+TGG | 0.534329 | 4_1:-30793612 | None:intergenic |
| AACTTAATTTGCTATTGCAA+TGG | 0.540183 | 4_1:+30793650 | Msa0543760:exon |
| TGAATGAATCAAGAAATTTG+TGG | 0.548018 | 4_1:+30794312 | Msa0543760:three_prime_UTR |
| AATGGTTTATAATCTTGTTG+GGG | 0.563787 | 4_1:+30793901 | Msa0543760:CDS |
| GCAACCAGACCAAGGTTCAA+AGG | 0.564494 | 4_1:+30793844 | Msa0543760:CDS |
| AATGTTTCAACAGATTCCAA+AGG | 0.613753 | 4_1:+30793696 | Msa0543760:CDS |
| ACAGATCAGCAACCAGACCA+AGG | 0.650716 | 4_1:+30793836 | Msa0543760:intron |
| TAGAAGAAATAGGGAAGACG+GGG | 0.665985 | 4_1:-30793460 | None:intergenic |
| TGGAATGATTGAGATTTGAG+TGG | 0.693035 | 4_1:-30793562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATTATTGTTAATAT+AGG | - | chr4_1:30793523-30793542 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTTACAATTTA+AGG | - | chr4_1:30793940-30793959 | None:intergenic | 10.0% |
| !! | AAGTAAATTATTGTTAATAT+AGG | - | chr4_1:30793523-30793542 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTTACAATTTA+AGG | - | chr4_1:30793940-30793959 | None:intergenic | 10.0% |
| !! | CTACAAATATAGAAGAAATA+GGG | - | chr4_1:30793472-30793491 | None:intergenic | 20.0% |
| !! | ACTACAAATATAGAAGAAAT+AGG | - | chr4_1:30793473-30793492 | None:intergenic | 20.0% |
| !! | ATTTCTCTTAGTCAATAAAA+TGG | - | chr4_1:30793804-30793823 | None:intergenic | 20.0% |
| !!! | ATTTTATTGACTAAGAGAAA+TGG | + | chr4_1:30793803-30793822 | Msa0543760:intron | 20.0% |
| !! | AAAATGGTTTATAATCTTGT+TGG | + | chr4_1:30793899-30793918 | Msa0543760:CDS | 20.0% |
| !! | AAATGGTTTATAATCTTGTT+GGG | + | chr4_1:30793900-30793919 | Msa0543760:CDS | 20.0% |
| !! | ATAACATCAATAACAAAGTT+TGG | - | chr4_1:30793982-30794001 | None:intergenic | 20.0% |
| !! | TATGAATGAATCAAGAAATT+TGG | + | chr4_1:30794310-30794329 | Msa0543760:three_prime_UTR | 20.0% |
| !! | CTACAAATATAGAAGAAATA+GGG | - | chr4_1:30793472-30793491 | None:intergenic | 20.0% |
| !! | ACTACAAATATAGAAGAAAT+AGG | - | chr4_1:30793473-30793492 | None:intergenic | 20.0% |
| !! | ATTTCTCTTAGTCAATAAAA+TGG | - | chr4_1:30793804-30793823 | None:intergenic | 20.0% |
| !!! | ATTTTATTGACTAAGAGAAA+TGG | + | chr4_1:30793803-30793822 | Msa0543760:intron | 20.0% |
| !! | AAAATGGTTTATAATCTTGT+TGG | + | chr4_1:30793899-30793918 | Msa0543760:CDS | 20.0% |
| !! | AAATGGTTTATAATCTTGTT+GGG | + | chr4_1:30793900-30793919 | Msa0543760:CDS | 20.0% |
| !! | ATAACATCAATAACAAAGTT+TGG | - | chr4_1:30793982-30794001 | None:intergenic | 20.0% |
| ! | TGAGTGGTGTATTAATATAT+AGG | - | chr4_1:30793549-30793568 | None:intergenic | 25.0% |
| !! | CTATTTGATAATCAAGATGT+GGG | - | chr4_1:30793614-30793633 | None:intergenic | 25.0% |
| !! | TCTATTTGATAATCAAGATG+TGG | - | chr4_1:30793615-30793634 | None:intergenic | 25.0% |
| !!! | AACTTAATTTGCTATTGCAA+TGG | + | chr4_1:30793650-30793669 | Msa0543760:exon | 25.0% |
| !!! | ATCTGTTGAAACATTTTTAG+AGG | - | chr4_1:30793691-30793710 | None:intergenic | 25.0% |
| !! | AAAAGACATGCATTCTAAAA+GGG | - | chr4_1:30793724-30793743 | None:intergenic | 25.0% |
| ! | TAAAAGACATGCATTCTAAA+AGG | - | chr4_1:30793725-30793744 | None:intergenic | 25.0% |
| ! | AGAGGAAATGCTTATTAAAA+TGG | + | chr4_1:30793883-30793902 | Msa0543760:CDS | 25.0% |
| ! | AATGGTTTATAATCTTGTTG+GGG | + | chr4_1:30793901-30793920 | Msa0543760:CDS | 25.0% |
| !! | ATGAATGTGTATTTTCTCAT+AGG | + | chr4_1:30794191-30794210 | Msa0543760:intron | 25.0% |
| ! | CAGAAGAGATAGAAAAATAT+TGG | + | chr4_1:30794251-30794270 | Msa0543760:CDS | 25.0% |
| ! | TGAGTGGTGTATTAATATAT+AGG | - | chr4_1:30793549-30793568 | None:intergenic | 25.0% |
| !! | CTATTTGATAATCAAGATGT+GGG | - | chr4_1:30793614-30793633 | None:intergenic | 25.0% |
| !! | TCTATTTGATAATCAAGATG+TGG | - | chr4_1:30793615-30793634 | None:intergenic | 25.0% |
| !!! | AACTTAATTTGCTATTGCAA+TGG | + | chr4_1:30793650-30793669 | Msa0543760:exon | 25.0% |
| !!! | ATCTGTTGAAACATTTTTAG+AGG | - | chr4_1:30793691-30793710 | None:intergenic | 25.0% |
| !! | AAAAGACATGCATTCTAAAA+GGG | - | chr4_1:30793724-30793743 | None:intergenic | 25.0% |
| ! | TAAAAGACATGCATTCTAAA+AGG | - | chr4_1:30793725-30793744 | None:intergenic | 25.0% |
| ! | AGAGGAAATGCTTATTAAAA+TGG | + | chr4_1:30793883-30793902 | Msa0543760:CDS | 25.0% |
| ! | AATGGTTTATAATCTTGTTG+GGG | + | chr4_1:30793901-30793920 | Msa0543760:CDS | 25.0% |
| !! | ATGAATGTGTATTTTCTCAT+AGG | + | chr4_1:30794191-30794210 | Msa0543760:intron | 25.0% |
| ! | CAGAAGAGATAGAAAAATAT+TGG | + | chr4_1:30794251-30794270 | Msa0543760:CDS | 25.0% |
| TATAGAAGAAATAGGGAAGA+CGG | - | chr4_1:30793465-30793484 | None:intergenic | 30.0% | |
| !!! | TGGTGTTATTTTGCAGAATA+TGG | - | chr4_1:30793585-30793604 | None:intergenic | 30.0% |
| AATGTTTCAACAGATTCCAA+AGG | + | chr4_1:30793696-30793715 | Msa0543760:CDS | 30.0% | |
| AAAATTCAACCTTTGAACCT+TGG | - | chr4_1:30793856-30793875 | None:intergenic | 30.0% | |
| ! | TTTGGAATGAAAGTGAAAAG+AGG | - | chr4_1:30793964-30793983 | None:intergenic | 30.0% |
| GTCTAGTGTTTGTGTTTATT+TGG | - | chr4_1:30794018-30794037 | None:intergenic | 30.0% | |
| ! | AATGTGTATTTTCTCATAGG+TGG | + | chr4_1:30794194-30794213 | Msa0543760:intron | 30.0% |
| TTTCTTGATTCATTCATAGC+TGG | - | chr4_1:30794308-30794327 | None:intergenic | 30.0% | |
| TATAGAAGAAATAGGGAAGA+CGG | - | chr4_1:30793465-30793484 | None:intergenic | 30.0% | |
| !!! | TGGTGTTATTTTGCAGAATA+TGG | - | chr4_1:30793585-30793604 | None:intergenic | 30.0% |
| AATGTTTCAACAGATTCCAA+AGG | + | chr4_1:30793696-30793715 | Msa0543760:CDS | 30.0% | |
| AAAATTCAACCTTTGAACCT+TGG | - | chr4_1:30793856-30793875 | None:intergenic | 30.0% | |
| ! | TTTGGAATGAAAGTGAAAAG+AGG | - | chr4_1:30793964-30793983 | None:intergenic | 30.0% |
| GTCTAGTGTTTGTGTTTATT+TGG | - | chr4_1:30794018-30794037 | None:intergenic | 30.0% | |
| ! | AATGTGTATTTTCTCATAGG+TGG | + | chr4_1:30794194-30794213 | Msa0543760:intron | 30.0% |
| TTTCTTGATTCATTCATAGC+TGG | - | chr4_1:30794308-30794327 | None:intergenic | 30.0% | |
| ATAGAAGAAATAGGGAAGAC+GGG | - | chr4_1:30793464-30793483 | None:intergenic | 35.0% | |
| TGGAATGATTGAGATTTGAG+TGG | - | chr4_1:30793565-30793584 | None:intergenic | 35.0% | |
| AATCAAGATGTGGGAAACTA+TGG | - | chr4_1:30793605-30793624 | None:intergenic | 35.0% | |
| !! | GGTTGAATTTTCTGAAGAAG+AGG | + | chr4_1:30793865-30793884 | Msa0543760:CDS | 35.0% |
| TTTATAATCTTGTTGGGGAG+AGG | + | chr4_1:30793906-30793925 | Msa0543760:CDS | 35.0% | |
| TAACATGCATGTATTCGTGT+TGG | + | chr4_1:30794072-30794091 | Msa0543760:intron | 35.0% | |
| ATAGAAGAAATAGGGAAGAC+GGG | - | chr4_1:30793464-30793483 | None:intergenic | 35.0% | |
| TGGAATGATTGAGATTTGAG+TGG | - | chr4_1:30793565-30793584 | None:intergenic | 35.0% | |
| AATCAAGATGTGGGAAACTA+TGG | - | chr4_1:30793605-30793624 | None:intergenic | 35.0% | |
| !! | GGTTGAATTTTCTGAAGAAG+AGG | + | chr4_1:30793865-30793884 | Msa0543760:CDS | 35.0% |
| TTTATAATCTTGTTGGGGAG+AGG | + | chr4_1:30793906-30793925 | Msa0543760:CDS | 35.0% | |
| TAACATGCATGTATTCGTGT+TGG | + | chr4_1:30794072-30794091 | Msa0543760:intron | 35.0% | |
| TAGAAGAAATAGGGAAGACG+GGG | - | chr4_1:30793463-30793482 | None:intergenic | 40.0% | |
| !! | GCATTCTAAAAGGGTACCTT+TGG | - | chr4_1:30793715-30793734 | None:intergenic | 40.0% |
| ! | AAACCTTCGATCTAGAGTGT+CGG | + | chr4_1:30794121-30794140 | Msa0543760:intron | 40.0% |
| TTGATTGCTGGAAGAATTCC+TGG | + | chr4_1:30794220-30794239 | Msa0543760:CDS | 40.0% | |
| TAGAAGAAATAGGGAAGACG+GGG | - | chr4_1:30793463-30793482 | None:intergenic | 40.0% | |
| !! | GCATTCTAAAAGGGTACCTT+TGG | - | chr4_1:30793715-30793734 | None:intergenic | 40.0% |
| ! | AAACCTTCGATCTAGAGTGT+CGG | + | chr4_1:30794121-30794140 | Msa0543760:intron | 40.0% |
| TTGATTGCTGGAAGAATTCC+TGG | + | chr4_1:30794220-30794239 | Msa0543760:CDS | 40.0% | |
| TCAACCTTTGAACCTTGGTC+TGG | - | chr4_1:30793851-30793870 | None:intergenic | 45.0% | |
| CTCTAGATCGAAGGTTTGTC+TGG | - | chr4_1:30794118-30794137 | None:intergenic | 45.0% | |
| ! | CATAGGTGGTCATTGATTGC+TGG | + | chr4_1:30794208-30794227 | Msa0543760:intron | 45.0% |
| ATCTCTTCTGCTGTTCTTCC+AGG | - | chr4_1:30794241-30794260 | None:intergenic | 45.0% | |
| TCAACCTTTGAACCTTGGTC+TGG | - | chr4_1:30793851-30793870 | None:intergenic | 45.0% | |
| CTCTAGATCGAAGGTTTGTC+TGG | - | chr4_1:30794118-30794137 | None:intergenic | 45.0% | |
| ! | CATAGGTGGTCATTGATTGC+TGG | + | chr4_1:30794208-30794227 | Msa0543760:intron | 45.0% |
| ATCTCTTCTGCTGTTCTTCC+AGG | - | chr4_1:30794241-30794260 | None:intergenic | 45.0% | |
| ACAGATCAGCAACCAGACCA+AGG | + | chr4_1:30793836-30793855 | Msa0543760:intron | 50.0% | |
| GCAACCAGACCAAGGTTCAA+AGG | + | chr4_1:30793844-30793863 | Msa0543760:CDS | 50.0% | |
| ACACCGACACTCTAGATCGA+AGG | - | chr4_1:30794127-30794146 | None:intergenic | 50.0% | |
| ACAGATCAGCAACCAGACCA+AGG | + | chr4_1:30793836-30793855 | Msa0543760:intron | 50.0% | |
| GCAACCAGACCAAGGTTCAA+AGG | + | chr4_1:30793844-30793863 | Msa0543760:CDS | 50.0% | |
| ACACCGACACTCTAGATCGA+AGG | - | chr4_1:30794127-30794146 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 30793451 | 30794331 | 30793451 | ID=Msa0543760;Name=Msa0543760 |
| chr4_1 | mRNA | 30793451 | 30794331 | 30793451 | ID=Msa0543760-mRNA-1;Parent=Msa0543760;Name=Msa0543760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=218|1|1|1|1|1|3|31|74 |
| chr4_1 | exon | 30793451 | 30793717 | 30793451 | ID=Msa0543760-mRNA-1:exon:8068;Parent=Msa0543760-mRNA-1 |
| chr4_1 | exon | 30793840 | 30793927 | 30793840 | ID=Msa0543760-mRNA-1:exon:8069;Parent=Msa0543760-mRNA-1 |
| chr4_1 | exon | 30794213 | 30794331 | 30794213 | ID=Msa0543760-mRNA-1:exon:8070;Parent=Msa0543760-mRNA-1 |
| chr4_1 | five_prime_UTR | 30793451 | 30793668 | 30793451 | ID=Msa0543760-mRNA-1:five_prime_utr;Parent=Msa0543760-mRNA-1 |
| chr4_1 | CDS | 30793669 | 30793717 | 30793669 | ID=Msa0543760-mRNA-1:cds;Parent=Msa0543760-mRNA-1 |
| chr4_1 | CDS | 30793840 | 30793927 | 30793840 | ID=Msa0543760-mRNA-1:cds;Parent=Msa0543760-mRNA-1 |
| chr4_1 | CDS | 30794213 | 30794300 | 30794213 | ID=Msa0543760-mRNA-1:cds;Parent=Msa0543760-mRNA-1 |
| chr4_1 | three_prime_UTR | 30794301 | 30794331 | 30794301 | ID=Msa0543760-mRNA-1:three_prime_utr;Parent=Msa0543760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
