Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543770 | XP_013455622.1 | 86.486 | 74 | 10 | 0 | 1 | 74 | 1 | 74 | 7.99e-39 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543770 | sp|O22059|CPC_ARATH | 65.957 | 47 | 16 | 0 | 26 | 72 | 36 | 82 | 9.66e-16 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543770 | A0A072UKM9 | 86.486 | 74 | 10 | 0 | 1 | 74 | 1 | 74 | 3.81e-39 | 133 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0543770 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543770 | MtrunA17_Chr4g0024181 | 86.486 | 74 | 10 | 0 | 1 | 74 | 1 | 74 | 7.35e-43 | 133 |
| Msa0543770 | MtrunA17_Chr2g0322831 | 70.000 | 50 | 15 | 0 | 24 | 73 | 30 | 79 | 4.20e-20 | 76.3 |
| Msa0543770 | MtrunA17_Chr5g0396771 | 65.217 | 46 | 16 | 0 | 26 | 71 | 37 | 82 | 5.23e-18 | 71.2 |
| Msa0543770 | MtrunA17_Chr2g0288361 | 49.333 | 75 | 35 | 2 | 1 | 73 | 1 | 74 | 5.52e-18 | 70.5 |
| Msa0543770 | MtrunA17_Chr7g0229101 | 57.143 | 42 | 18 | 0 | 27 | 68 | 29 | 70 | 4.82e-13 | 60.8 |
| Msa0543770 | MtrunA17_Chr4g0044421 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 1.12e-12 | 59.7 |
| Msa0543770 | MtrunA17_Chr4g0055981 | 63.415 | 41 | 15 | 0 | 28 | 68 | 113 | 153 | 2.50e-12 | 59.3 |
| Msa0543770 | MtrunA17_Chr4g0037141 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 2.81e-12 | 59.7 |
| Msa0543770 | MtrunA17_Chr8g0360111 | 58.537 | 41 | 17 | 0 | 28 | 68 | 83 | 123 | 3.51e-12 | 59.3 |
| Msa0543770 | MtrunA17_Chr5g0435101 | 56.098 | 41 | 18 | 0 | 28 | 68 | 69 | 109 | 3.67e-12 | 58.5 |
| Msa0543770 | MtrunA17_Chr7g0240821 | 54.545 | 44 | 20 | 0 | 28 | 71 | 59 | 102 | 4.51e-12 | 58.5 |
| Msa0543770 | MtrunA17_Chr3g0121241 | 57.143 | 42 | 18 | 0 | 27 | 68 | 99 | 140 | 6.00e-12 | 58.9 |
| Msa0543770 | MtrunA17_Chr4g0070641 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 7.60e-12 | 57.0 |
| Msa0543770 | MtrunA17_Chr4g0070611 | 57.500 | 40 | 16 | 1 | 29 | 68 | 72 | 110 | 1.16e-11 | 58.2 |
| Msa0543770 | MtrunA17_Chr8g0346561 | 56.098 | 41 | 18 | 0 | 28 | 68 | 70 | 110 | 2.21e-11 | 57.4 |
| Msa0543770 | MtrunA17_Chr7g0275911 | 57.143 | 42 | 17 | 1 | 30 | 71 | 73 | 113 | 2.21e-11 | 57.0 |
| Msa0543770 | MtrunA17_Chr7g0220341 | 56.098 | 41 | 18 | 0 | 28 | 68 | 85 | 125 | 2.24e-11 | 57.0 |
| Msa0543770 | MtrunA17_Chr3g0135311 | 50.000 | 42 | 21 | 0 | 28 | 69 | 71 | 112 | 6.42e-11 | 55.8 |
| Msa0543770 | MtrunA17_Chr1g0152011 | 52.381 | 42 | 20 | 0 | 28 | 69 | 71 | 112 | 6.45e-11 | 55.8 |
| Msa0543770 | MtrunA17_Chr5g0434901 | 51.220 | 41 | 20 | 0 | 28 | 68 | 31 | 71 | 7.00e-11 | 53.5 |
| Msa0543770 | MtrunA17_Chr7g0228991 | 51.220 | 41 | 20 | 0 | 28 | 68 | 87 | 127 | 8.19e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543770 | AT2G46410.1 | 65.957 | 47 | 16 | 0 | 26 | 72 | 36 | 82 | 9.82e-17 | 68.2 |
| Msa0543770 | AT1G01380.1 | 68.293 | 41 | 13 | 0 | 26 | 66 | 32 | 72 | 1.40e-15 | 65.1 |
| Msa0543770 | AT5G53200.1 | 58.696 | 46 | 19 | 0 | 26 | 71 | 31 | 76 | 4.11e-14 | 62.0 |
| Msa0543770 | AT4G01060.3 | 63.415 | 41 | 15 | 0 | 26 | 66 | 31 | 71 | 9.21e-14 | 60.1 |
| Msa0543770 | AT4G01060.1 | 63.415 | 41 | 15 | 0 | 26 | 66 | 33 | 73 | 9.89e-14 | 60.1 |
| Msa0543770 | AT4G01060.2 | 63.415 | 41 | 15 | 0 | 26 | 66 | 30 | 70 | 9.92e-14 | 60.1 |
| Msa0543770 | AT2G30420.1 | 56.522 | 46 | 20 | 0 | 26 | 71 | 38 | 83 | 1.68e-12 | 58.2 |
| Msa0543770 | AT1G22640.3 | 58.537 | 41 | 17 | 0 | 28 | 68 | 13 | 53 | 3.07e-12 | 58.9 |
| Msa0543770 | AT4G38620.1 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 4.81e-12 | 59.3 |
| Msa0543770 | AT1G22640.1 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 6.62e-12 | 58.9 |
| Msa0543770 | AT5G14750.4 | 52.273 | 44 | 21 | 0 | 28 | 71 | 13 | 56 | 1.11e-11 | 56.6 |
| Msa0543770 | AT5G14750.2 | 52.273 | 44 | 21 | 0 | 28 | 71 | 13 | 56 | 1.11e-11 | 56.6 |
| Msa0543770 | AT5G35550.2 | 62.500 | 40 | 14 | 1 | 29 | 68 | 77 | 115 | 1.84e-11 | 57.8 |
| Msa0543770 | AT3G49690.1 | 54.762 | 42 | 19 | 0 | 28 | 69 | 71 | 112 | 1.89e-11 | 57.8 |
| Msa0543770 | AT4G09460.1 | 51.220 | 41 | 20 | 0 | 28 | 68 | 70 | 110 | 2.23e-11 | 57.0 |
| Msa0543770 | AT5G14750.3 | 52.273 | 44 | 21 | 0 | 28 | 71 | 40 | 83 | 2.24e-11 | 56.2 |
| Msa0543770 | AT3G27920.1 | 50.000 | 48 | 24 | 0 | 24 | 71 | 68 | 115 | 2.83e-11 | 57.0 |
| Msa0543770 | AT2G30424.1 | 48.077 | 52 | 24 | 1 | 26 | 74 | 34 | 85 | 3.01e-11 | 54.3 |
| Msa0543770 | AT3G13540.1 | 58.537 | 41 | 17 | 0 | 28 | 68 | 81 | 121 | 3.17e-11 | 57.0 |
| Msa0543770 | AT2G30432.1 | 52.174 | 46 | 22 | 0 | 26 | 71 | 33 | 78 | 3.68e-11 | 53.9 |
| Msa0543770 | AT5G14750.1 | 52.273 | 44 | 21 | 0 | 28 | 71 | 74 | 117 | 4.28e-11 | 56.2 |
| Msa0543770 | AT5G65790.1 | 52.381 | 42 | 20 | 0 | 28 | 69 | 71 | 112 | 6.48e-11 | 56.6 |
Find 26 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAAATGCTTATTAAAA+TGG | 0.190572 | 4_1:+30812302 | Msa0543770:CDS |
| ATCTCTTCTGCTGTTCTTCC+AGG | 0.213845 | 4_1:-30812658 | None:intergenic |
| ACTAGAAATAGAGAAGAAAT+AGG | 0.277297 | 4_1:-30811885 | None:intergenic |
| AAATGGTTTATAATCTTGTT+GGG | 0.339232 | 4_1:+30812319 | Msa0543770:CDS |
| AAGTAAATTATTGTTAATAT+AGG | 0.342014 | 4_1:-30811935 | None:intergenic |
| TTGATTGCTGGAAGAATTCC+TGG | 0.342209 | 4_1:+30812640 | Msa0543770:CDS |
| TGAGTGGTGTATTAATATAT+AGG | 0.379554 | 4_1:-30811961 | None:intergenic |
| AAAATGGTTTATAATCTTGT+TGG | 0.380870 | 4_1:+30812318 | Msa0543770:CDS |
| CATAGGTGGTCATTGATTGC+TGG | 0.399125 | 4_1:+30812628 | Msa0543770:intron |
| TTTCTTGATTCATTCATAGT+TGG | 0.417658 | 4_1:-30812725 | None:intergenic |
| TCAACCTTTGAACCTTGGTC+TGG | 0.418134 | 4_1:-30812267 | None:intergenic |
| AGAGAAGAAATAGGGAAGAC+GGG | 0.426905 | 4_1:-30811876 | None:intergenic |
| AATCAAGATGTGGGAAACTA+TGG | 0.433656 | 4_1:-30812017 | None:intergenic |
| AAAATTCAACCTTTGAACCT+TGG | 0.444402 | 4_1:-30812272 | None:intergenic |
| CTAGAAATAGAGAAGAAATA+GGG | 0.460374 | 4_1:-30811884 | None:intergenic |
| TAGAGAAGAAATAGGGAAGA+CGG | 0.468552 | 4_1:-30811877 | None:intergenic |
| TTTATAATCTTGTTGGGGAG+AGG | 0.507013 | 4_1:+30812325 | Msa0543770:CDS |
| CTATTTGATAATCAAGATGT+GGG | 0.528349 | 4_1:-30812026 | None:intergenic |
| TCTATTTGATAATCAAGATG+TGG | 0.534329 | 4_1:-30812027 | None:intergenic |
| TGAATGAATCAAGAAATTTG+TGG | 0.536313 | 4_1:+30812732 | Msa0543770:three_prime_UTR |
| AATGGTTTATAATCTTGTTG+GGG | 0.563787 | 4_1:+30812320 | Msa0543770:CDS |
| GCAACCAGACCAAGGTTCAA+AGG | 0.564494 | 4_1:+30812263 | Msa0543770:CDS |
| AATGTTTCAACAGATTCCAA+AGG | 0.606722 | 4_1:+30812114 | Msa0543770:CDS |
| GAGAAGAAATAGGGAAGACG+GGG | 0.635275 | 4_1:-30811875 | None:intergenic |
| ACAGATCAGCAACCAGACCA+AGG | 0.650716 | 4_1:+30812255 | Msa0543770:intron |
| TGGAATGATTGAGATTTGAG+TGG | 0.693035 | 4_1:-30811977 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATTATTGTTAATAT+AGG | - | chr4_1:30811938-30811957 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTTACAATTTA+AGG | - | chr4_1:30812359-30812378 | None:intergenic | 10.0% |
| !! | AAGTAAATTATTGTTAATAT+AGG | - | chr4_1:30811938-30811957 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTTACAATTTA+AGG | - | chr4_1:30812359-30812378 | None:intergenic | 10.0% |
| !!! | TGTCTTTTATAGCTAATTAA+TGG | + | chr4_1:30812156-30812175 | Msa0543770:intron | 20.0% |
| !! | ATTTCTCTTAGTCAATAAAA+TGG | - | chr4_1:30812223-30812242 | None:intergenic | 20.0% |
| !!! | ATTTTATTGACTAAGAGAAA+TGG | + | chr4_1:30812222-30812241 | Msa0543770:intron | 20.0% |
| !! | AAAATGGTTTATAATCTTGT+TGG | + | chr4_1:30812318-30812337 | Msa0543770:CDS | 20.0% |
| !! | AAATGGTTTATAATCTTGTT+GGG | + | chr4_1:30812319-30812338 | Msa0543770:CDS | 20.0% |
| !! | ATAACATCAATAACAAAGTT+TGG | - | chr4_1:30812401-30812420 | None:intergenic | 20.0% |
| !! | TATGAATGAATCAAGAAATT+TGG | + | chr4_1:30812730-30812749 | Msa0543770:three_prime_UTR | 20.0% |
| !!! | TGTCTTTTATAGCTAATTAA+TGG | + | chr4_1:30812156-30812175 | Msa0543770:intron | 20.0% |
| !! | ATTTCTCTTAGTCAATAAAA+TGG | - | chr4_1:30812223-30812242 | None:intergenic | 20.0% |
| !!! | ATTTTATTGACTAAGAGAAA+TGG | + | chr4_1:30812222-30812241 | Msa0543770:intron | 20.0% |
| !! | AAAATGGTTTATAATCTTGT+TGG | + | chr4_1:30812318-30812337 | Msa0543770:CDS | 20.0% |
| !! | AAATGGTTTATAATCTTGTT+GGG | + | chr4_1:30812319-30812338 | Msa0543770:CDS | 20.0% |
| !! | ATAACATCAATAACAAAGTT+TGG | - | chr4_1:30812401-30812420 | None:intergenic | 20.0% |
| ! | CTAGAAATAGAGAAGAAATA+GGG | - | chr4_1:30811887-30811906 | None:intergenic | 25.0% |
| ! | ACTAGAAATAGAGAAGAAAT+AGG | - | chr4_1:30811888-30811907 | None:intergenic | 25.0% |
| ! | TGAGTGGTGTATTAATATAT+AGG | - | chr4_1:30811964-30811983 | None:intergenic | 25.0% |
| !! | CTATTTGATAATCAAGATGT+GGG | - | chr4_1:30812029-30812048 | None:intergenic | 25.0% |
| !! | TCTATTTGATAATCAAGATG+TGG | - | chr4_1:30812030-30812049 | None:intergenic | 25.0% |
| !! | AAAAGACATGCATTCTAAAA+GGG | - | chr4_1:30812144-30812163 | None:intergenic | 25.0% |
| ! | TAAAAGACATGCATTCTAAA+AGG | - | chr4_1:30812145-30812164 | None:intergenic | 25.0% |
| ! | AGAGGAAATGCTTATTAAAA+TGG | + | chr4_1:30812302-30812321 | Msa0543770:CDS | 25.0% |
| ! | AATGGTTTATAATCTTGTTG+GGG | + | chr4_1:30812320-30812339 | Msa0543770:CDS | 25.0% |
| !! | ATGAATGTGTATTTTCTCAT+AGG | + | chr4_1:30812611-30812630 | Msa0543770:intron | 25.0% |
| ! | CAGAAGAGATAGAAAAATAT+TGG | + | chr4_1:30812671-30812690 | Msa0543770:CDS | 25.0% |
| ! | TTTCTTGATTCATTCATAGT+TGG | - | chr4_1:30812728-30812747 | None:intergenic | 25.0% |
| ! | CTAGAAATAGAGAAGAAATA+GGG | - | chr4_1:30811887-30811906 | None:intergenic | 25.0% |
| ! | ACTAGAAATAGAGAAGAAAT+AGG | - | chr4_1:30811888-30811907 | None:intergenic | 25.0% |
| ! | TGAGTGGTGTATTAATATAT+AGG | - | chr4_1:30811964-30811983 | None:intergenic | 25.0% |
| !! | CTATTTGATAATCAAGATGT+GGG | - | chr4_1:30812029-30812048 | None:intergenic | 25.0% |
| !! | TCTATTTGATAATCAAGATG+TGG | - | chr4_1:30812030-30812049 | None:intergenic | 25.0% |
| !! | AAAAGACATGCATTCTAAAA+GGG | - | chr4_1:30812144-30812163 | None:intergenic | 25.0% |
| ! | TAAAAGACATGCATTCTAAA+AGG | - | chr4_1:30812145-30812164 | None:intergenic | 25.0% |
| ! | AGAGGAAATGCTTATTAAAA+TGG | + | chr4_1:30812302-30812321 | Msa0543770:CDS | 25.0% |
| ! | AATGGTTTATAATCTTGTTG+GGG | + | chr4_1:30812320-30812339 | Msa0543770:CDS | 25.0% |
| !! | ATGAATGTGTATTTTCTCAT+AGG | + | chr4_1:30812611-30812630 | Msa0543770:intron | 25.0% |
| ! | CAGAAGAGATAGAAAAATAT+TGG | + | chr4_1:30812671-30812690 | Msa0543770:CDS | 25.0% |
| ! | TTTCTTGATTCATTCATAGT+TGG | - | chr4_1:30812728-30812747 | None:intergenic | 25.0% |
| !!! | TGGTGTTATTTTGCAGAATA+TGG | - | chr4_1:30812000-30812019 | None:intergenic | 30.0% |
| !! | AACTCAATTTGCTTTTGCAA+TGG | + | chr4_1:30812068-30812087 | Msa0543770:exon | 30.0% |
| AATGTTTCAACAGATTCCAA+AGG | + | chr4_1:30812114-30812133 | Msa0543770:CDS | 30.0% | |
| ! | ATTCTAAAAGGGTATACCTT+TGG | - | chr4_1:30812133-30812152 | None:intergenic | 30.0% |
| AAAATTCAACCTTTGAACCT+TGG | - | chr4_1:30812275-30812294 | None:intergenic | 30.0% | |
| ! | TTTGGAATGAAAGTGAAAAG+AGG | - | chr4_1:30812383-30812402 | None:intergenic | 30.0% |
| GTCTAGTGTTTGTGTTTATT+TGG | - | chr4_1:30812437-30812456 | None:intergenic | 30.0% | |
| ! | AATGTGTATTTTCTCATAGG+TGG | + | chr4_1:30812614-30812633 | Msa0543770:intron | 30.0% |
| !!! | TGGTGTTATTTTGCAGAATA+TGG | - | chr4_1:30812000-30812019 | None:intergenic | 30.0% |
| !! | AACTCAATTTGCTTTTGCAA+TGG | + | chr4_1:30812068-30812087 | Msa0543770:exon | 30.0% |
| AATGTTTCAACAGATTCCAA+AGG | + | chr4_1:30812114-30812133 | Msa0543770:CDS | 30.0% | |
| ! | ATTCTAAAAGGGTATACCTT+TGG | - | chr4_1:30812133-30812152 | None:intergenic | 30.0% |
| AAAATTCAACCTTTGAACCT+TGG | - | chr4_1:30812275-30812294 | None:intergenic | 30.0% | |
| ! | TTTGGAATGAAAGTGAAAAG+AGG | - | chr4_1:30812383-30812402 | None:intergenic | 30.0% |
| GTCTAGTGTTTGTGTTTATT+TGG | - | chr4_1:30812437-30812456 | None:intergenic | 30.0% | |
| ! | AATGTGTATTTTCTCATAGG+TGG | + | chr4_1:30812614-30812633 | Msa0543770:intron | 30.0% |
| TAGAGAAGAAATAGGGAAGA+CGG | - | chr4_1:30811880-30811899 | None:intergenic | 35.0% | |
| TGGAATGATTGAGATTTGAG+TGG | - | chr4_1:30811980-30811999 | None:intergenic | 35.0% | |
| AATCAAGATGTGGGAAACTA+TGG | - | chr4_1:30812020-30812039 | None:intergenic | 35.0% | |
| !! | GGTTGAATTTTCTGAAGAAG+AGG | + | chr4_1:30812284-30812303 | Msa0543770:CDS | 35.0% |
| TTTATAATCTTGTTGGGGAG+AGG | + | chr4_1:30812325-30812344 | Msa0543770:CDS | 35.0% | |
| AACACTGCATGTATTCATGT+TGG | + | chr4_1:30812492-30812511 | Msa0543770:intron | 35.0% | |
| TAGAGAAGAAATAGGGAAGA+CGG | - | chr4_1:30811880-30811899 | None:intergenic | 35.0% | |
| TGGAATGATTGAGATTTGAG+TGG | - | chr4_1:30811980-30811999 | None:intergenic | 35.0% | |
| AATCAAGATGTGGGAAACTA+TGG | - | chr4_1:30812020-30812039 | None:intergenic | 35.0% | |
| !! | GGTTGAATTTTCTGAAGAAG+AGG | + | chr4_1:30812284-30812303 | Msa0543770:CDS | 35.0% |
| TTTATAATCTTGTTGGGGAG+AGG | + | chr4_1:30812325-30812344 | Msa0543770:CDS | 35.0% | |
| AACACTGCATGTATTCATGT+TGG | + | chr4_1:30812492-30812511 | Msa0543770:intron | 35.0% | |
| AGAGAAGAAATAGGGAAGAC+GGG | - | chr4_1:30811879-30811898 | None:intergenic | 40.0% | |
| ! | AAACCTTCGATCTAGAGTGT+CGG | + | chr4_1:30812541-30812560 | Msa0543770:intron | 40.0% |
| TTGATTGCTGGAAGAATTCC+TGG | + | chr4_1:30812640-30812659 | Msa0543770:CDS | 40.0% | |
| AGAGAAGAAATAGGGAAGAC+GGG | - | chr4_1:30811879-30811898 | None:intergenic | 40.0% | |
| ! | AAACCTTCGATCTAGAGTGT+CGG | + | chr4_1:30812541-30812560 | Msa0543770:intron | 40.0% |
| TTGATTGCTGGAAGAATTCC+TGG | + | chr4_1:30812640-30812659 | Msa0543770:CDS | 40.0% | |
| GAGAAGAAATAGGGAAGACG+GGG | - | chr4_1:30811878-30811897 | None:intergenic | 45.0% | |
| TCAACCTTTGAACCTTGGTC+TGG | - | chr4_1:30812270-30812289 | None:intergenic | 45.0% | |
| CTCTAGATCGAAGGTTTGTC+TGG | - | chr4_1:30812538-30812557 | None:intergenic | 45.0% | |
| ! | CATAGGTGGTCATTGATTGC+TGG | + | chr4_1:30812628-30812647 | Msa0543770:intron | 45.0% |
| ATCTCTTCTGCTGTTCTTCC+AGG | - | chr4_1:30812661-30812680 | None:intergenic | 45.0% | |
| GAGAAGAAATAGGGAAGACG+GGG | - | chr4_1:30811878-30811897 | None:intergenic | 45.0% | |
| TCAACCTTTGAACCTTGGTC+TGG | - | chr4_1:30812270-30812289 | None:intergenic | 45.0% | |
| CTCTAGATCGAAGGTTTGTC+TGG | - | chr4_1:30812538-30812557 | None:intergenic | 45.0% | |
| ! | CATAGGTGGTCATTGATTGC+TGG | + | chr4_1:30812628-30812647 | Msa0543770:intron | 45.0% |
| ATCTCTTCTGCTGTTCTTCC+AGG | - | chr4_1:30812661-30812680 | None:intergenic | 45.0% | |
| ACAGATCAGCAACCAGACCA+AGG | + | chr4_1:30812255-30812274 | Msa0543770:intron | 50.0% | |
| GCAACCAGACCAAGGTTCAA+AGG | + | chr4_1:30812263-30812282 | Msa0543770:CDS | 50.0% | |
| ACACCGACACTCTAGATCGA+AGG | - | chr4_1:30812547-30812566 | None:intergenic | 50.0% | |
| ACAGATCAGCAACCAGACCA+AGG | + | chr4_1:30812255-30812274 | Msa0543770:intron | 50.0% | |
| GCAACCAGACCAAGGTTCAA+AGG | + | chr4_1:30812263-30812282 | Msa0543770:CDS | 50.0% | |
| ACACCGACACTCTAGATCGA+AGG | - | chr4_1:30812547-30812566 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 30811866 | 30812751 | 30811866 | ID=Msa0543770;Name=Msa0543770 |
| chr4_1 | mRNA | 30811866 | 30812751 | 30811866 | ID=Msa0543770-mRNA-1;Parent=Msa0543770;Name=Msa0543770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=221|1|1|1|1|1|3|31|74 |
| chr4_1 | exon | 30811866 | 30812135 | 30811866 | ID=Msa0543770-mRNA-1:exon:8071;Parent=Msa0543770-mRNA-1 |
| chr4_1 | exon | 30812259 | 30812346 | 30812259 | ID=Msa0543770-mRNA-1:exon:8072;Parent=Msa0543770-mRNA-1 |
| chr4_1 | exon | 30812633 | 30812751 | 30812633 | ID=Msa0543770-mRNA-1:exon:8073;Parent=Msa0543770-mRNA-1 |
| chr4_1 | five_prime_UTR | 30811866 | 30812086 | 30811866 | ID=Msa0543770-mRNA-1:five_prime_utr;Parent=Msa0543770-mRNA-1 |
| chr4_1 | CDS | 30812087 | 30812135 | 30812087 | ID=Msa0543770-mRNA-1:cds;Parent=Msa0543770-mRNA-1 |
| chr4_1 | CDS | 30812259 | 30812346 | 30812259 | ID=Msa0543770-mRNA-1:cds;Parent=Msa0543770-mRNA-1 |
| chr4_1 | CDS | 30812633 | 30812720 | 30812633 | ID=Msa0543770-mRNA-1:cds;Parent=Msa0543770-mRNA-1 |
| chr4_1 | three_prime_UTR | 30812721 | 30812751 | 30812721 | ID=Msa0543770-mRNA-1:three_prime_utr;Parent=Msa0543770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
