Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544560 | PNX72808.1 | 95.531 | 179 | 8 | 0 | 117 | 295 | 1 | 179 | 2.89e-121 | 361 |
Msa0544560 | PNX72808.1 | 95.690 | 116 | 5 | 0 | 3 | 118 | 1 | 116 | 1.43e-72 | 237 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544560 | sp|Q6ZAR0|ROC1_ORYSJ | 80.795 | 151 | 23 | 3 | 149 | 295 | 78 | 226 | 5.08e-79 | 258 |
Msa0544560 | sp|Q6ZAR0|ROC1_ORYSJ | 80.460 | 87 | 11 | 3 | 35 | 117 | 78 | 162 | 1.76e-37 | 144 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544560 | A0A2K3L2P4 | 95.531 | 179 | 8 | 0 | 117 | 295 | 1 | 179 | 1.38e-121 | 361 |
Msa0544560 | A0A2K3L2P4 | 95.690 | 116 | 5 | 0 | 3 | 118 | 1 | 116 | 6.83e-73 | 237 |
Gene ID | Type | Classification |
---|---|---|
Msa0544560 | TF | HB-other |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544560 | MtrunA17_Chr4g0024351 | 97.765 | 179 | 3 | 1 | 117 | 295 | 3 | 180 | 5.13e-123 | 368 |
Msa0544560 | MtrunA17_Chr4g0024351 | 98.305 | 118 | 1 | 1 | 1 | 118 | 1 | 117 | 8.73e-76 | 245 |
Msa0544560 | MtrunA17_Chr2g0322731 | 79.781 | 183 | 31 | 2 | 119 | 295 | 38 | 220 | 1.00e-96 | 301 |
Msa0544560 | MtrunA17_Chr2g0322731 | 75.410 | 122 | 24 | 2 | 3 | 118 | 36 | 157 | 2.07e-53 | 186 |
Msa0544560 | MtrunA17_Chr8g0350321 | 61.644 | 146 | 51 | 2 | 153 | 295 | 92 | 235 | 8.77e-53 | 184 |
Msa0544560 | MtrunA17_Chr8g0350321 | 62.353 | 85 | 27 | 2 | 39 | 120 | 92 | 174 | 1.49e-25 | 106 |
Msa0544560 | MtrunA17_Chr7g0246631 | 61.538 | 143 | 54 | 1 | 154 | 295 | 69 | 211 | 3.42e-51 | 179 |
Msa0544560 | MtrunA17_Chr7g0246631 | 60.976 | 82 | 31 | 1 | 40 | 120 | 69 | 150 | 3.85e-24 | 102 |
Msa0544560 | MtrunA17_Chr5g0410711 | 67.213 | 122 | 39 | 1 | 175 | 295 | 89 | 210 | 4.69e-51 | 179 |
Msa0544560 | MtrunA17_Chr5g0410711 | 77.586 | 58 | 13 | 0 | 61 | 118 | 89 | 146 | 5.57e-25 | 104 |
Msa0544560 | MtrunA17_Chr1g0203671 | 57.962 | 157 | 62 | 2 | 142 | 295 | 60 | 215 | 1.44e-49 | 175 |
Msa0544560 | MtrunA17_Chr1g0203671 | 60.417 | 96 | 34 | 2 | 28 | 120 | 60 | 154 | 1.13e-25 | 107 |
Msa0544560 | MtrunA17_Chr6g0481041 | 55.705 | 149 | 54 | 2 | 158 | 295 | 2 | 149 | 1.58e-49 | 174 |
Msa0544560 | MtrunA17_Chr6g0481041 | 55.814 | 86 | 26 | 2 | 44 | 118 | 2 | 86 | 1.85e-23 | 100 |
Msa0544560 | MtrunA17_Chr6g0472471 | 55.696 | 158 | 63 | 3 | 142 | 295 | 35 | 189 | 2.67e-47 | 169 |
Msa0544560 | MtrunA17_Chr6g0472471 | 54.639 | 97 | 37 | 3 | 28 | 120 | 35 | 128 | 4.41e-23 | 99.4 |
Msa0544560 | MtrunA17_Chr2g0331581 | 58.824 | 119 | 47 | 1 | 179 | 295 | 143 | 261 | 1.49e-39 | 147 |
Msa0544560 | MtrunA17_Chr2g0331581 | 68.519 | 54 | 17 | 0 | 65 | 118 | 143 | 196 | 1.10e-19 | 89.4 |
Msa0544560 | MtrunA17_Chr5g0394111 | 56.140 | 114 | 49 | 1 | 182 | 295 | 40 | 152 | 4.43e-36 | 136 |
Msa0544560 | MtrunA17_Chr5g0394111 | 64.000 | 50 | 18 | 0 | 68 | 117 | 40 | 89 | 3.18e-17 | 82.0 |
Msa0544560 | MtrunA17_Chr5g0419821 | 50.000 | 122 | 60 | 1 | 175 | 295 | 33 | 154 | 3.70e-35 | 125 |
Msa0544560 | MtrunA17_Chr5g0419821 | 55.738 | 61 | 26 | 1 | 61 | 120 | 33 | 93 | 1.47e-15 | 73.2 |
Msa0544560 | MtrunA17_Chr7g0224481 | 45.324 | 139 | 62 | 2 | 158 | 296 | 2 | 126 | 4.80e-34 | 126 |
Msa0544560 | MtrunA17_Chr7g0224481 | 46.667 | 75 | 37 | 1 | 44 | 118 | 2 | 73 | 6.22e-17 | 79.7 |
Msa0544560 | MtrunA17_Chr7g0224451 | 46.429 | 140 | 59 | 3 | 158 | 296 | 2 | 126 | 1.80e-33 | 127 |
Msa0544560 | MtrunA17_Chr7g0224451 | 48.684 | 76 | 34 | 2 | 44 | 118 | 2 | 73 | 8.23e-17 | 80.1 |
Msa0544560 | MtrunA17_Chr1g0205981 | 53.030 | 66 | 31 | 0 | 230 | 295 | 1 | 66 | 1.82e-16 | 76.3 |
Msa0544560 | MtrunA17_Chr2g0326731 | 42.500 | 80 | 39 | 2 | 178 | 253 | 23 | 99 | 1.76e-11 | 64.7 |
Msa0544560 | MtrunA17_Chr4g0028991 | 35.714 | 98 | 55 | 2 | 178 | 267 | 28 | 125 | 6.86e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544560 | AT1G05230.12 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 9.10e-78 | 248 |
Msa0544560 | AT1G05230.12 | 60.976 | 123 | 41 | 3 | 1 | 118 | 1 | 121 | 1.75e-35 | 135 |
Msa0544560 | AT1G05230.8 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.8 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.4 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.4 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.9 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.9 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.10 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.10 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.7 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.7 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.11 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.11 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.2 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.2 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.6 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.6 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.5 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.5 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.1 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.40e-77 | 249 |
Msa0544560 | AT1G05230.1 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.06e-35 | 135 |
Msa0544560 | AT1G05230.3 | 79.355 | 155 | 28 | 2 | 143 | 295 | 32 | 184 | 3.61e-77 | 249 |
Msa0544560 | AT1G05230.3 | 73.913 | 92 | 20 | 2 | 29 | 118 | 32 | 121 | 2.17e-35 | 135 |
Msa0544560 | AT4G04890.2 | 68.862 | 167 | 46 | 4 | 133 | 295 | 18 | 182 | 2.79e-68 | 226 |
Msa0544560 | AT4G04890.2 | 59.350 | 123 | 41 | 6 | 1 | 118 | 1 | 119 | 1.05e-32 | 127 |
Msa0544560 | AT4G04890.1 | 68.862 | 167 | 46 | 4 | 133 | 295 | 18 | 182 | 2.79e-68 | 226 |
Msa0544560 | AT4G04890.1 | 59.350 | 123 | 41 | 6 | 1 | 118 | 1 | 119 | 1.05e-32 | 127 |
Msa0544560 | AT4G21750.2 | 68.208 | 173 | 49 | 4 | 127 | 295 | 12 | 182 | 1.88e-67 | 224 |
Msa0544560 | AT4G21750.2 | 59.836 | 122 | 42 | 5 | 1 | 118 | 1 | 119 | 3.82e-31 | 123 |
Msa0544560 | AT4G21750.1 | 68.208 | 173 | 49 | 4 | 127 | 295 | 12 | 182 | 1.88e-67 | 224 |
Msa0544560 | AT4G21750.1 | 59.836 | 122 | 42 | 5 | 1 | 118 | 1 | 119 | 3.82e-31 | 123 |
Msa0544560 | AT4G21750.3 | 68.208 | 173 | 49 | 4 | 127 | 295 | 12 | 182 | 1.88e-67 | 224 |
Msa0544560 | AT4G21750.3 | 59.836 | 122 | 42 | 5 | 1 | 118 | 1 | 119 | 3.82e-31 | 123 |
Msa0544560 | AT4G21750.4 | 68.208 | 173 | 49 | 4 | 127 | 295 | 12 | 182 | 1.88e-67 | 224 |
Msa0544560 | AT4G21750.4 | 59.836 | 122 | 42 | 5 | 1 | 118 | 1 | 119 | 3.82e-31 | 123 |
Msa0544560 | AT2G32370.1 | 63.333 | 150 | 52 | 2 | 146 | 295 | 42 | 188 | 6.24e-57 | 195 |
Msa0544560 | AT2G32370.1 | 63.218 | 87 | 29 | 2 | 32 | 118 | 42 | 125 | 1.14e-28 | 115 |
Msa0544560 | AT4G00730.2 | 63.014 | 146 | 49 | 2 | 153 | 295 | 111 | 254 | 8.97e-55 | 187 |
Msa0544560 | AT4G00730.2 | 63.529 | 85 | 26 | 2 | 39 | 120 | 111 | 193 | 1.87e-25 | 106 |
Msa0544560 | AT4G00730.1 | 63.014 | 146 | 49 | 2 | 153 | 295 | 111 | 254 | 5.69e-54 | 188 |
Msa0544560 | AT4G00730.1 | 63.529 | 85 | 26 | 2 | 39 | 120 | 111 | 193 | 1.36e-25 | 107 |
Msa0544560 | AT3G61150.1 | 60.000 | 145 | 56 | 1 | 153 | 295 | 86 | 230 | 1.31e-51 | 181 |
Msa0544560 | AT3G61150.1 | 57.143 | 84 | 34 | 1 | 39 | 120 | 86 | 169 | 8.41e-24 | 101 |
Msa0544560 | AT1G73360.1 | 66.116 | 121 | 41 | 0 | 175 | 295 | 32 | 152 | 3.09e-50 | 177 |
Msa0544560 | AT1G73360.1 | 74.138 | 58 | 15 | 0 | 61 | 118 | 32 | 89 | 9.43e-24 | 101 |
Msa0544560 | AT5G46880.3 | 62.500 | 128 | 46 | 1 | 168 | 295 | 104 | 229 | 4.34e-47 | 169 |
Msa0544560 | AT5G46880.3 | 75.385 | 65 | 16 | 0 | 54 | 118 | 104 | 168 | 1.52e-25 | 107 |
Msa0544560 | AT5G46880.1 | 62.500 | 128 | 46 | 1 | 168 | 295 | 104 | 229 | 4.34e-47 | 169 |
Msa0544560 | AT5G46880.1 | 75.385 | 65 | 16 | 0 | 54 | 118 | 104 | 168 | 1.52e-25 | 107 |
Msa0544560 | AT5G46880.2 | 62.500 | 128 | 46 | 1 | 168 | 295 | 104 | 229 | 4.34e-47 | 169 |
Msa0544560 | AT5G46880.2 | 75.385 | 65 | 16 | 0 | 54 | 118 | 104 | 168 | 1.52e-25 | 107 |
Msa0544560 | AT5G52170.3 | 53.704 | 162 | 65 | 5 | 140 | 295 | 20 | 177 | 9.09e-44 | 158 |
Msa0544560 | AT5G52170.3 | 55.446 | 101 | 35 | 5 | 26 | 120 | 20 | 116 | 6.62e-22 | 96.3 |
Msa0544560 | AT5G52170.1 | 53.704 | 162 | 65 | 5 | 140 | 295 | 20 | 177 | 9.09e-44 | 158 |
Msa0544560 | AT5G52170.1 | 55.446 | 101 | 35 | 5 | 26 | 120 | 20 | 116 | 6.62e-22 | 96.3 |
Msa0544560 | AT5G52170.2 | 53.704 | 162 | 65 | 5 | 140 | 295 | 20 | 177 | 1.02e-43 | 158 |
Msa0544560 | AT5G52170.2 | 55.446 | 101 | 35 | 5 | 26 | 120 | 20 | 116 | 6.83e-22 | 96.3 |
Msa0544560 | AT1G17920.2 | 54.676 | 139 | 59 | 1 | 157 | 295 | 7 | 141 | 6.29e-42 | 153 |
Msa0544560 | AT1G17920.2 | 60.526 | 76 | 26 | 1 | 43 | 118 | 7 | 78 | 1.45e-20 | 92.0 |
Msa0544560 | AT1G17920.1 | 54.676 | 139 | 59 | 1 | 157 | 295 | 7 | 141 | 6.29e-42 | 153 |
Msa0544560 | AT1G17920.1 | 60.526 | 76 | 26 | 1 | 43 | 118 | 7 | 78 | 1.45e-20 | 92.0 |
Msa0544560 | AT1G79840.5 | 53.731 | 134 | 51 | 2 | 164 | 295 | 90 | 214 | 1.15e-37 | 140 |
Msa0544560 | AT1G79840.5 | 60.870 | 69 | 27 | 0 | 50 | 118 | 90 | 158 | 3.16e-22 | 96.7 |
Msa0544560 | AT1G79840.4 | 54.478 | 134 | 50 | 3 | 164 | 295 | 90 | 214 | 2.41e-37 | 140 |
Msa0544560 | AT1G79840.4 | 60.870 | 69 | 27 | 0 | 50 | 118 | 90 | 158 | 2.49e-22 | 97.4 |
Msa0544560 | AT1G79840.1 | 53.731 | 134 | 51 | 2 | 164 | 295 | 90 | 214 | 2.42e-37 | 140 |
Msa0544560 | AT1G79840.1 | 60.870 | 69 | 27 | 0 | 50 | 118 | 90 | 158 | 1.88e-22 | 97.8 |
Msa0544560 | AT1G79840.3 | 53.731 | 134 | 51 | 2 | 164 | 295 | 32 | 156 | 2.43e-37 | 140 |
Msa0544560 | AT1G79840.3 | 60.870 | 69 | 27 | 0 | 50 | 118 | 32 | 100 | 1.97e-22 | 97.8 |
Msa0544560 | AT1G79840.6 | 53.731 | 134 | 51 | 2 | 164 | 295 | 32 | 156 | 2.43e-37 | 140 |
Msa0544560 | AT1G79840.6 | 60.870 | 69 | 27 | 0 | 50 | 118 | 32 | 100 | 1.97e-22 | 97.8 |
Msa0544560 | AT3G03260.2 | 51.408 | 142 | 61 | 3 | 159 | 293 | 2 | 142 | 2.46e-37 | 139 |
Msa0544560 | AT3G03260.2 | 42.857 | 119 | 54 | 3 | 45 | 152 | 2 | 117 | 1.39e-20 | 92.0 |
Msa0544560 | AT1G79840.2 | 53.731 | 134 | 51 | 2 | 164 | 295 | 119 | 243 | 3.73e-37 | 140 |
Msa0544560 | AT1G79840.2 | 60.870 | 69 | 27 | 0 | 50 | 118 | 119 | 187 | 2.44e-22 | 97.4 |
Msa0544560 | AT3G03260.1 | 51.408 | 142 | 61 | 3 | 159 | 293 | 2 | 142 | 4.46e-37 | 140 |
Msa0544560 | AT3G03260.1 | 42.857 | 119 | 54 | 3 | 45 | 152 | 2 | 117 | 1.26e-20 | 92.4 |
Msa0544560 | AT4G17710.1 | 51.562 | 128 | 50 | 1 | 168 | 295 | 81 | 196 | 7.47e-36 | 136 |
Msa0544560 | AT4G17710.1 | 64.615 | 65 | 23 | 0 | 54 | 118 | 81 | 145 | 2.39e-22 | 97.4 |
Msa0544560 | AT5G17320.1 | 56.122 | 98 | 43 | 0 | 173 | 270 | 24 | 121 | 1.30e-31 | 124 |
Msa0544560 | AT5G17320.1 | 63.333 | 60 | 22 | 0 | 59 | 118 | 24 | 83 | 9.98e-19 | 86.7 |
Msa0544560 | AT1G34650.1 | 46.903 | 113 | 60 | 0 | 182 | 294 | 23 | 135 | 3.80e-28 | 114 |
Msa0544560 | AT1G34650.1 | 60.000 | 50 | 20 | 0 | 68 | 117 | 23 | 72 | 6.00e-15 | 75.5 |
Msa0544560 | AT4G25530.1 | 39.669 | 121 | 73 | 0 | 175 | 295 | 40 | 160 | 3.21e-20 | 91.3 |
Msa0544560 | AT5G60690.1 | 35.714 | 98 | 55 | 2 | 178 | 267 | 25 | 122 | 7.60e-11 | 63.2 |
Find 70 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTCCTTTGCTTGTCATC+TGG | 0.193302 | 4_1:-33352441 | None:intergenic |
TCCTTCCTTTGCTTGTCATC+TGG | 0.193302 | 4_1:-33357767 | None:intergenic |
ATTCTTACGATTCCATTTCT+TGG | 0.235108 | 4_1:-33352262 | None:intergenic |
ATTCTTACGATTCCATTTCT+TGG | 0.235108 | 4_1:-33357585 | None:intergenic |
AAGGAGTTAAGCAGAGAGTT+AGG | 0.279953 | 4_1:+33352459 | Msa0544560:CDS |
AAGGAGTTAAGCAGAGAGTT+AGG | 0.279953 | 4_1:+33357785 | Msa0544560:CDS |
CCTTCCTTTGCTTGTCATCT+GGG | 0.284990 | 4_1:-33352440 | None:intergenic |
CCTTCCTTTGCTTGTCATCT+GGG | 0.284990 | 4_1:-33357766 | None:intergenic |
CATGAAGGTGGTGCTGCTTC+TGG | 0.302796 | 4_1:+33352179 | Msa0544560:CDS |
CATGAAGGTGGTGCTGCTTC+TGG | 0.302796 | 4_1:+33357502 | Msa0544560:CDS |
TTTCGAAGCACTCGTCTTCT+CGG | 0.304296 | 4_1:-33352130 | None:intergenic |
TTTCGAAGCACTCGTCTTCT+CGG | 0.304296 | 4_1:-33357453 | None:intergenic |
ACGATTCCATTTCTTGGATC+TGG | 0.342668 | 4_1:-33352256 | None:intergenic |
ACGATTCCATTTCTTGGATC+TGG | 0.342668 | 4_1:-33357579 | None:intergenic |
AGCCTTTGCAAGTCAAGTTT+TGG | 0.343226 | 4_1:+33352487 | Msa0544560:CDS |
AGCCTTTGCAAGTCAAGTTT+TGG | 0.343226 | 4_1:+33357813 | Msa0544560:CDS |
GAGCTGATAACATGAGGTAT+AGG | 0.357648 | 4_1:+33358004 | Msa0544560:CDS |
CAGAAGCAGCACCACCTTCA+TGG | 0.382160 | 4_1:-33352178 | None:intergenic |
CAGAAGCAGCACCACCTTCA+TGG | 0.382160 | 4_1:-33357501 | None:intergenic |
TGTGGTGGTCCAACAGCTAT+AGG | 0.411505 | 4_1:+33358057 | Msa0544560:CDS |
CTTTGCTTGTCATCTGGGTG+TGG | 0.428946 | 4_1:-33352435 | None:intergenic |
CTTTGCTTGTCATCTGGGTG+TGG | 0.428946 | 4_1:-33357761 | None:intergenic |
AGCTGATAACATGAGGTATA+GGG | 0.432619 | 4_1:+33358005 | Msa0544560:CDS |
GCTGTTGGACCACCACAATT+AGG | 0.438343 | 4_1:-33358051 | None:intergenic |
CATTTGATGAACATCATTTG+AGG | 0.446985 | 4_1:+33358088 | Msa0544560:CDS |
AATGTTTCAGTCAAACCTCT+TGG | 0.448780 | 4_1:+33352043 | None:intergenic |
AATGTTTCAGTCAAACCTCT+TGG | 0.448780 | 4_1:+33357366 | Msa0544560:intron |
CACTCGTCTTCTCGGATTCG+AGG | 0.451326 | 4_1:-33352122 | None:intergenic |
CACTCGTCTTCTCGGATTCG+AGG | 0.451326 | 4_1:-33357445 | None:intergenic |
TATTTGTTGCAGTTTCTTCA+AGG | 0.453245 | 4_1:+33352407 | Msa0544560:intron |
TATTTGTTGCAGTTTCTTCA+AGG | 0.453245 | 4_1:+33357733 | Msa0544560:intron |
CAGTCAAACCTCTTGGAAGC+TGG | 0.469434 | 4_1:+33352050 | Msa0544560:CDS |
CAGTCAAACCTCTTGGAAGC+TGG | 0.469434 | 4_1:+33357373 | Msa0544560:intron |
TCAGCACCAGATCCAAGAAA+TGG | 0.471078 | 4_1:+33352250 | Msa0544560:CDS |
TCAGCACCAGATCCAAGAAA+TGG | 0.471078 | 4_1:+33357573 | Msa0544560:CDS |
GACATTTCACCTATAGCTGT+TGG | 0.486224 | 4_1:-33358066 | None:intergenic |
GCAGACACAACATGAACGTT+CGG | 0.496911 | 4_1:+33357945 | Msa0544560:intron |
AGGAGTTAAGCAGAGAGTTA+GGG | 0.515842 | 4_1:+33352460 | Msa0544560:CDS |
AGGAGTTAAGCAGAGAGTTA+GGG | 0.515842 | 4_1:+33357786 | Msa0544560:CDS |
AACCAAAACTTGACTTGCAA+AGG | 0.523378 | 4_1:-33352489 | None:intergenic |
AACCAAAACTTGACTTGCAA+AGG | 0.523378 | 4_1:-33357815 | None:intergenic |
AAACAAAAGGACTCAGATGA+AGG | 0.533633 | 4_1:+33352515 | Msa0544560:CDS |
AAACAAAAGGACTCAGATGA+AGG | 0.533633 | 4_1:+33357841 | Msa0544560:CDS |
TTTGCATCATCTCTAATGGA+TGG | 0.546858 | 4_1:-33352079 | None:intergenic |
TTTGCATCATCTCTAATGGA+TGG | 0.546858 | 4_1:-33357402 | None:intergenic |
GAAGACGAGTGCTTCGAAAG+TGG | 0.546911 | 4_1:+33352134 | Msa0544560:CDS |
GAAGACGAGTGCTTCGAAAG+TGG | 0.546911 | 4_1:+33357457 | Msa0544560:CDS |
CTTGGATCTGGTGCTGAGTG+TGG | 0.562215 | 4_1:-33352244 | None:intergenic |
CTTGGATCTGGTGCTGAGTG+TGG | 0.562215 | 4_1:-33357567 | None:intergenic |
ATTTGAGGCTTGAAAATGCA+AGG | 0.576070 | 4_1:+33358103 | Msa0544560:CDS |
ACTCGTCTTCTCGGATTCGA+GGG | 0.584124 | 4_1:-33352121 | None:intergenic |
ACTCGTCTTCTCGGATTCGA+GGG | 0.584124 | 4_1:-33357444 | None:intergenic |
CCCAGATGACAAGCAAAGGA+AGG | 0.600252 | 4_1:+33352440 | Msa0544560:CDS |
CCCAGATGACAAGCAAAGGA+AGG | 0.600252 | 4_1:+33357766 | Msa0544560:CDS |
AAATGCAAGGCTAAGAGAAG+AGG | 0.619130 | 4_1:+33358116 | Msa0544560:CDS |
CACACCCAGATGACAAGCAA+AGG | 0.622325 | 4_1:+33352436 | Msa0544560:CDS |
CACACCCAGATGACAAGCAA+AGG | 0.622325 | 4_1:+33357762 | Msa0544560:CDS |
GCTGCTTCTGGTGAAGAACA+AGG | 0.627125 | 4_1:+33352191 | Msa0544560:CDS |
GCTGCTTCTGGTGAAGAACA+AGG | 0.627125 | 4_1:+33357514 | Msa0544560:CDS |
TCCTGCAGTGAAAACCATGA+AGG | 0.632264 | 4_1:+33352164 | Msa0544560:CDS |
TCCTGCAGTGAAAACCATGA+AGG | 0.632264 | 4_1:+33357487 | Msa0544560:CDS |
GCTTCATGTCCTAATTGTGG+TGG | 0.643891 | 4_1:+33358042 | Msa0544560:CDS |
GGATCTGGTGCTGAGTGTGG+CGG | 0.645442 | 4_1:-33352241 | None:intergenic |
GGATCTGGTGCTGAGTGTGG+CGG | 0.645442 | 4_1:-33357564 | None:intergenic |
AGCTTAGAGCTGATAACATG+AGG | 0.647699 | 4_1:+33357998 | Msa0544560:CDS |
AATGCTTCATGTCCTAATTG+TGG | 0.661151 | 4_1:+33358039 | Msa0544560:CDS |
GGAACTGACCAGCTTCCAAG+AGG | 0.667277 | 4_1:-33352058 | None:intergenic |
GGAACTGACCAGCTTCCAAG+AGG | 0.667277 | 4_1:-33357381 | None:intergenic |
TGCAGTGAAAACCATGAAGG+TGG | 0.700352 | 4_1:+33352167 | Msa0544560:CDS |
TGCAGTGAAAACCATGAAGG+TGG | 0.700352 | 4_1:+33357490 | Msa0544560:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAATTTTTAAATATTAA+TGG | - | chr4_1:33353015-33353034 | None:intergenic | 0.0% |
!! | AAAAAATTTATAATATTATA+TGG | - | chr4_1:33357272-33357291 | None:intergenic | 0.0% |
!!! | TATATATGATACTATTTTTT+GGG | + | chr4_1:33352538-33352557 | Msa0544560:intron | 10.0% |
!! | TTCTTTATTAAAAACATTTA+CGG | - | chr4_1:33353879-33353898 | None:intergenic | 10.0% |
!! | TAAAGATAATAAATTTCTTA+AGG | + | chr4_1:33354050-33354069 | Msa0544560:intron | 10.0% |
!!! | ATTATGAAAATTTCTTTTAA+TGG | + | chr4_1:33354728-33354747 | Msa0544560:intron | 10.0% |
!!! | TTTTGAGTTTAAATTAAAAT+AGG | - | chr4_1:33354793-33354812 | None:intergenic | 10.0% |
!! | TTAAAAATAAGGAATATAAT+AGG | - | chr4_1:33355143-33355162 | None:intergenic | 10.0% |
!!! | TATTATATTCCTTATTTTTA+AGG | + | chr4_1:33355142-33355161 | Msa0544560:intron | 10.0% |
!!! | AATTTGTTTATATTTTTATG+GGG | + | chr4_1:33355942-33355961 | Msa0544560:intron | 10.0% |
!! | AAACATATTTACTTAAAAAT+AGG | + | chr4_1:33356075-33356094 | Msa0544560:intron | 10.0% |
!!! | GAAAATTTTGATAAAATAAT+TGG | - | chr4_1:33356996-33357015 | None:intergenic | 10.0% |
!!! | ATATATGATACTATTTTTTT+TGG | + | chr4_1:33357865-33357884 | Msa0544560:intron | 10.0% |
!!! | GTATATATGATACTATTTTT+TGG | + | chr4_1:33352537-33352556 | Msa0544560:intron | 15.0% |
!! | TTGTTAATAACAAAAAATCT+CGG | + | chr4_1:33353816-33353835 | Msa0544560:intron | 15.0% |
!!! | ATTTTCTTTAGTAATTATTG+AGG | + | chr4_1:33353913-33353932 | Msa0544560:intron | 15.0% |
!!! | TTTTCTTTAGTAATTATTGA+GGG | + | chr4_1:33353914-33353933 | Msa0544560:intron | 15.0% |
!!! | TTTTAGAATTTAAAATGAAG+AGG | + | chr4_1:33353956-33353975 | Msa0544560:intron | 15.0% |
!! | TATTATCTTTAAGCAATTTA+TGG | - | chr4_1:33354041-33354060 | None:intergenic | 15.0% |
!! | TAATAAATTTCTTAAGGTTA+TGG | + | chr4_1:33354056-33354075 | Msa0544560:intron | 15.0% |
!!! | ATTATGAAAGTTTCTTTTAA+TGG | + | chr4_1:33354197-33354216 | Msa0544560:intron | 15.0% |
!!! | GATAGATTTTTGATTAAATA+TGG | - | chr4_1:33354483-33354502 | None:intergenic | 15.0% |
!!! | GTTTAACTGATTTAAATTAA+GGG | - | chr4_1:33354831-33354850 | None:intergenic | 15.0% |
!!! | AGTTTAACTGATTTAAATTA+AGG | - | chr4_1:33354832-33354851 | None:intergenic | 15.0% |
!!! | AAGTTTACTAAATTTTATTC+CGG | + | chr4_1:33355024-33355043 | Msa0544560:intron | 15.0% |
!!! | GTTATTAATTAGTAAGATTT+TGG | - | chr4_1:33355329-33355348 | None:intergenic | 15.0% |
!!! | TTATTTTGTTCTGTAAAAAA+AGG | + | chr4_1:33356159-33356178 | Msa0544560:intron | 15.0% |
!! | ATATCTATGAATGAAATAAA+AGG | - | chr4_1:33356220-33356239 | None:intergenic | 15.0% |
!! | TTCAGTCAAAAATTAATAAA+GGG | - | chr4_1:33356593-33356612 | None:intergenic | 15.0% |
!! | TTTCAGTCAAAAATTAATAA+AGG | - | chr4_1:33356594-33356613 | None:intergenic | 15.0% |
!!! | TTTTTCTTTTTCCTTTTTTA+TGG | - | chr4_1:33356869-33356888 | None:intergenic | 15.0% |
!! | AGAGAAAAATTAAAAAAAGT+TGG | + | chr4_1:33357225-33357244 | Msa0544560:intron | 15.0% |
!! | AAAATGAAAAAAAAACTTGA+TGG | - | chr4_1:33357627-33357646 | None:intergenic | 15.0% |
!! | GAATGATAAAAAAAACTTGA+TGG | - | chr4_1:33352304-33352323 | None:intergenic | 20.0% |
!! | GAGAAAATACTAGTATAATA+TGG | + | chr4_1:33352334-33352353 | Msa0544560:intron | 20.0% |
!! | ATTAAAGAAGGAAAAATTGA+AGG | + | chr4_1:33352885-33352904 | Msa0544560:intron | 20.0% |
!! | GATTGAGTTTACTAAAATAT+AGG | + | chr4_1:33353534-33353553 | Msa0544560:intron | 20.0% |
!!! | TACTTTGTAATTTTGAGTTT+TGG | + | chr4_1:33353661-33353680 | Msa0544560:intron | 20.0% |
!! | TTTCTTTAGTAATTATTGAG+GGG | + | chr4_1:33353915-33353934 | Msa0544560:intron | 20.0% |
!!! | ATTTTGTTGAGAAATTTCTT+TGG | - | chr4_1:33354011-33354030 | None:intergenic | 20.0% |
!! | ATTGTGTGATTTGATTATTT+AGG | - | chr4_1:33354117-33354136 | None:intergenic | 20.0% |
!!! | TTTTGGTTAGTAATTTCATT+CGG | - | chr4_1:33354435-33354454 | None:intergenic | 20.0% |
!!! | GTTATTAATTGCTAAGATTT+TGG | - | chr4_1:33354452-33354471 | None:intergenic | 20.0% |
!!! | ATTTTTATGATTTTATTCCC+AGG | - | chr4_1:33354983-33355002 | None:intergenic | 20.0% |
!! | AGTAAACTTGTAACAAATAT+AGG | - | chr4_1:33355013-33355032 | None:intergenic | 20.0% |
!!! | AGTTTACTAAATTTTATTCC+GGG | + | chr4_1:33355025-33355044 | Msa0544560:intron | 20.0% |
!! | GTTAACGTTATAATATTTCA+AGG | - | chr4_1:33355170-33355189 | None:intergenic | 20.0% |
!!! | AAGATAGAAATTTTATTCCA+AGG | - | chr4_1:33355214-33355233 | None:intergenic | 20.0% |
!! | ATTTCTATCTTTATATTCCA+AGG | + | chr4_1:33355223-33355242 | Msa0544560:intron | 20.0% |
!!! | GATAGAATTTTGGTTAAATA+TGG | - | chr4_1:33355360-33355379 | None:intergenic | 20.0% |
!! | TATTACAAAGAATTATTTGC+CGG | - | chr4_1:33355447-33355466 | None:intergenic | 20.0% |
!! | ATGGGAATAAAAAAAGTAAA+AGG | - | chr4_1:33355705-33355724 | None:intergenic | 20.0% |
!!! | TGGTTTTTTGTTTTTTTCTA+GGG | + | chr4_1:33356009-33356028 | Msa0544560:intron | 20.0% |
!! | GGAAAGAAAATATATTGTTT+AGG | - | chr4_1:33356199-33356218 | None:intergenic | 20.0% |
!! | ATTTCATTCATAGATATACA+AGG | + | chr4_1:33356223-33356242 | Msa0544560:intron | 20.0% |
!! | ATAGATATACAAGGTATATA+CGG | + | chr4_1:33356232-33356251 | Msa0544560:intron | 20.0% |
!!! | GATGTATTTATTTTTCTTCT+AGG | + | chr4_1:33356284-33356303 | Msa0544560:intron | 20.0% |
!! | TCAGTCAAAAATTAATAAAG+GGG | - | chr4_1:33356592-33356611 | None:intergenic | 20.0% |
!!! | TTATTTTAATTGCAAAGTCA+AGG | + | chr4_1:33356723-33356742 | Msa0544560:intron | 20.0% |
!!! | TATTTTAATTGCAAAGTCAA+GGG | + | chr4_1:33356724-33356743 | Msa0544560:intron | 20.0% |
!!! | GTTTTCTTTTTCCATAAAAA+AGG | + | chr4_1:33356855-33356874 | Msa0544560:intron | 20.0% |
!!! | TTTTGATAAAATAATTGGAG+TGG | - | chr4_1:33356991-33357010 | None:intergenic | 20.0% |
!!! | AATAAGACTACTTTTTTTAG+AGG | - | chr4_1:33357098-33357117 | None:intergenic | 20.0% |
!! | ATATTATATGGTAAACAAAC+TGG | - | chr4_1:33357260-33357279 | None:intergenic | 20.0% |
!! | GAGAAAATACTAGTATAATA+TGG | + | chr4_1:33352334-33352353 | Msa0544560:intron | 20.0% |
!! | AAAAACTTGATGGTAACATA+GGG | - | chr4_1:33352294-33352313 | None:intergenic | 25.0% |
!! | AAAAAACTTGATGGTAACAT+AGG | - | chr4_1:33352295-33352314 | None:intergenic | 25.0% |
!! | TTATACTAGTATTTTCTCTC+TGG | - | chr4_1:33352332-33352351 | None:intergenic | 25.0% |
!!! | AGTTTTGGTTTCAAAACAAA+AGG | + | chr4_1:33352502-33352521 | Msa0544560:CDS | 25.0% |
!!! | GTTTTGTTTTGTTGTGTTTT+TGG | + | chr4_1:33352572-33352591 | Msa0544560:intron | 25.0% |
!!! | TTTTGTTGTGTTTTTGGTAA+AGG | + | chr4_1:33352578-33352597 | Msa0544560:intron | 25.0% |
! | ATTACCATAAATAAGTCACA+AGG | + | chr4_1:33352754-33352773 | Msa0544560:intron | 25.0% |
! | TTACCATAAATAAGTCACAA+GGG | + | chr4_1:33352755-33352774 | Msa0544560:intron | 25.0% |
! | ACAAAAGTTCTCATTAAAGA+AGG | + | chr4_1:33352873-33352892 | Msa0544560:intron | 25.0% |
!! | AAATAGTTGACTTAACTACA+TGG | + | chr4_1:33353358-33353377 | Msa0544560:intron | 25.0% |
! | AATCATAACCATCAAACAAA+AGG | - | chr4_1:33353466-33353485 | None:intergenic | 25.0% |
!!! | TTTTGTTTGATGGTTATGAT+TGG | + | chr4_1:33353465-33353484 | Msa0544560:intron | 25.0% |
!! | TAAACTCTTTTTCCTCTATT+TGG | + | chr4_1:33353585-33353604 | Msa0544560:intron | 25.0% |
! | ATCGTAATAAAACCAAATAG+AGG | - | chr4_1:33353600-33353619 | None:intergenic | 25.0% |
!!! | TCTATTTGGTTTTATTACGA+TGG | + | chr4_1:33353599-33353618 | Msa0544560:intron | 25.0% |
! | GTTTCATCAAAAAACTTACT+TGG | - | chr4_1:33353630-33353649 | None:intergenic | 25.0% |
! | AGATAAAAAGACAAACCTTT+GGG | - | chr4_1:33353695-33353714 | None:intergenic | 25.0% |
! | AAGATAAAAAGACAAACCTT+TGG | - | chr4_1:33353696-33353715 | None:intergenic | 25.0% |
!! | TTCATAGTTCTGCAAAATAT+TGG | + | chr4_1:33353726-33353745 | Msa0544560:intron | 25.0% |
! | TTCTGCAAAATATTGGTAAA+GGG | + | chr4_1:33353733-33353752 | Msa0544560:intron | 25.0% |
!! | GATGAAGTGTTAACATAATT+GGG | + | chr4_1:33353756-33353775 | Msa0544560:intron | 25.0% |
!! | GTTTAACTGGTTTAAGTTAT+GGG | - | chr4_1:33354301-33354320 | None:intergenic | 25.0% |
!! | AGTTTAACTGGTTTAAGTTA+TGG | - | chr4_1:33354302-33354321 | None:intergenic | 25.0% |
! | TTTGGTTAGTAATTTCATTC+GGG | - | chr4_1:33354434-33354453 | None:intergenic | 25.0% |
!!! | TTTAATTTTCGGTTCAAGTT+CGG | + | chr4_1:33354593-33354612 | Msa0544560:intron | 25.0% |
! | TCTGATATAAATAGATGAAG+AGG | + | chr4_1:33354879-33354898 | Msa0544560:intron | 25.0% |
! | AAGTTATATTTGTAGATTCC+TGG | + | chr4_1:33354962-33354981 | Msa0544560:intron | 25.0% |
! | AGTTATATTTGTAGATTCCT+GGG | + | chr4_1:33354963-33354982 | Msa0544560:intron | 25.0% |
!! | AAAAGTTTTCCCAAAGAAAA+TGG | + | chr4_1:33355070-33355089 | Msa0544560:intron | 25.0% |
!! | TTATTCACACCATTTTCTTT+GGG | - | chr4_1:33355082-33355101 | None:intergenic | 25.0% |
! | TTCAAGGAACCTTAAAAATA+AGG | - | chr4_1:33355154-33355173 | None:intergenic | 25.0% |
!!! | CATCTTTTTTCTAAATACCT+TGG | + | chr4_1:33355194-33355213 | Msa0544560:intron | 25.0% |
! | GTTATTCTTAGGAATACATT+TGG | + | chr4_1:33355249-33355268 | Msa0544560:intron | 25.0% |
! | TTTGGTTAGTAATTTCATTC+TGG | - | chr4_1:33354434-33354453 | None:intergenic | 25.0% |
! | AATCAAGAAGGAATTGAATT+TGG | + | chr4_1:33355395-33355414 | Msa0544560:intron | 25.0% |
! | AAAAGGTTAGAAGAAAGAAA+CGG | - | chr4_1:33355688-33355707 | None:intergenic | 25.0% |
! | ACTCTTTAATCATTCATTTC+TGG | + | chr4_1:33355818-33355837 | Msa0544560:intron | 25.0% |
!!! | TTGTTTATATTTTTATGGGG+TGG | + | chr4_1:33355945-33355964 | Msa0544560:intron | 25.0% |
! | TGGAAAATAAACTTATCACA+AGG | - | chr4_1:33355988-33356007 | None:intergenic | 25.0% |
! | AGAAAAAAACAAAAAACCAC+TGG | - | chr4_1:33356008-33356027 | None:intergenic | 25.0% |
!!! | GTGGTTTTTTGTTTTTTTCT+AGG | + | chr4_1:33356008-33356027 | Msa0544560:intron | 25.0% |
!!! | TTTTTGTTTTTTTCTAGGGT+TGG | + | chr4_1:33356013-33356032 | Msa0544560:intron | 25.0% |
! | TAGAAAAAGACTTGAAGAAA+AGG | - | chr4_1:33356525-33356544 | None:intergenic | 25.0% |
! | GGATGAAAAATTGAAGAAAA+GGG | - | chr4_1:33356557-33356576 | None:intergenic | 25.0% |
!! | AATAAAGGGGAATTTAAGAT+GGG | - | chr4_1:33356579-33356598 | None:intergenic | 25.0% |
! | TAATAAAGGGGAATTTAAGA+TGG | - | chr4_1:33356580-33356599 | None:intergenic | 25.0% |
! | TTCTATTTATTGTTCCAATG+AGG | + | chr4_1:33356771-33356790 | Msa0544560:intron | 25.0% |
! | ATTTATTTACAAAGCTGGAT+GGG | - | chr4_1:33356910-33356929 | None:intergenic | 25.0% |
! | AATTTATTTACAAAGCTGGA+TGG | - | chr4_1:33356911-33356930 | None:intergenic | 25.0% |
! | CAGAAATTTATTTACAAAGC+TGG | - | chr4_1:33356915-33356934 | None:intergenic | 25.0% |
! | TAGTTTGAAAAACTACAACA+AGG | + | chr4_1:33357299-33357318 | Msa0544560:intron | 25.0% |
!! | AAAAACTTGATGGTAACATA+GGG | - | chr4_1:33352294-33352313 | None:intergenic | 25.0% |
!! | AAAAAACTTGATGGTAACAT+AGG | - | chr4_1:33352295-33352314 | None:intergenic | 25.0% |
!!! | AGTTTTGGTTTCAAAACAAA+AGG | + | chr4_1:33352502-33352521 | Msa0544560:CDS | 25.0% |
!!! | GTTTTGTTTTGTTGTGTTTT+TGG | + | chr4_1:33352572-33352591 | Msa0544560:intron | 25.0% |
!!! | TTTTGTTGTGTTTTTGGTAA+AGG | + | chr4_1:33352578-33352597 | Msa0544560:intron | 25.0% |
ATTCTTACGATTCCATTTCT+TGG | - | chr4_1:33352265-33352284 | None:intergenic | 30.0% | |
! | TATTTGTTGCAGTTTCTTCA+AGG | + | chr4_1:33352407-33352426 | Msa0544560:intron | 30.0% |
AATAGCAAAACTTAGTCCAA+CGG | - | chr4_1:33352737-33352756 | None:intergenic | 30.0% | |
AAGCTACATATAATTGACCA+TGG | - | chr4_1:33352827-33352846 | None:intergenic | 30.0% | |
TATCCTTACTAGCAAAAAGA+CGG | - | chr4_1:33353163-33353182 | None:intergenic | 30.0% | |
!! | TTGCTTCAATTTTTAGAGGA+GGG | - | chr4_1:33353224-33353243 | None:intergenic | 30.0% |
!! | TTTGCTTCAATTTTTAGAGG+AGG | - | chr4_1:33353225-33353244 | None:intergenic | 30.0% |
!! | GTGTTTGCTTCAATTTTTAG+AGG | - | chr4_1:33353228-33353247 | None:intergenic | 30.0% |
! | TCTGTTTGATTCAAGAGTTT+TGG | - | chr4_1:33353282-33353301 | None:intergenic | 30.0% |
CAATATTTCTCACATCTACA+TGG | + | chr4_1:33353403-33353422 | Msa0544560:intron | 30.0% | |
ATAAAAAGACAAACCTTTGG+GGG | - | chr4_1:33353693-33353712 | None:intergenic | 30.0% | |
GATAAAAAGACAAACCTTTG+GGG | - | chr4_1:33353694-33353713 | None:intergenic | 30.0% | |
GTTCTGCAAAATATTGGTAA+AGG | + | chr4_1:33353732-33353751 | Msa0544560:intron | 30.0% | |
TCTGCAAAATATTGGTAAAG+GGG | + | chr4_1:33353734-33353753 | Msa0544560:intron | 30.0% | |
! | GGATGAAGTGTTAACATAAT+TGG | + | chr4_1:33353755-33353774 | Msa0544560:intron | 30.0% |
AAGATATCGTTTGAATGGAA+TGG | - | chr4_1:33353785-33353804 | None:intergenic | 30.0% | |
TTCCATTCAAACGATATCTT+TGG | + | chr4_1:33353785-33353804 | Msa0544560:intron | 30.0% | |
TCCATTCAAACGATATCTTT+GGG | + | chr4_1:33353786-33353805 | Msa0544560:intron | 30.0% | |
TCAGCTACATAACATATGTT+GGG | - | chr4_1:33354333-33354352 | None:intergenic | 30.0% | |
ATCAGCTACATAACATATGT+TGG | - | chr4_1:33354334-33354353 | None:intergenic | 30.0% | |
AAAATCTATCAAATCACACG+CGG | + | chr4_1:33354493-33354512 | Msa0544560:intron | 30.0% | |
AAACTTTAGTCGAGTTAACT+CGG | + | chr4_1:33354667-33354686 | Msa0544560:intron | 30.0% | |
ATGCAACAATGAATAGACAT+GGG | + | chr4_1:33354927-33354946 | Msa0544560:intron | 30.0% | |
! | CTTATTCACACCATTTTCTT+TGG | - | chr4_1:33355083-33355102 | None:intergenic | 30.0% |
CAAAGAAAATGGTGTGAATA+AGG | + | chr4_1:33355081-33355100 | Msa0544560:intron | 30.0% | |
TTCCAAGGAATGTTATTCTT+AGG | + | chr4_1:33355238-33355257 | Msa0544560:intron | 30.0% | |
TTCCTAAGAATAACATTCCT+TGG | - | chr4_1:33355243-33355262 | None:intergenic | 30.0% | |
CTTAGGAATACATTTGGTAT+AGG | + | chr4_1:33355255-33355274 | Msa0544560:intron | 30.0% | |
! | CGTGTGATTTGATAGAATTT+TGG | - | chr4_1:33355370-33355389 | None:intergenic | 30.0% |
!!! | GGTTTTGAGAAGGTTAATAT+GGG | - | chr4_1:33355723-33355742 | None:intergenic | 30.0% |
!!! | TGGTTTTGAGAAGGTTAATA+TGG | - | chr4_1:33355724-33355743 | None:intergenic | 30.0% |
ATATTAACCTTCTCAAAACC+AGG | + | chr4_1:33355723-33355742 | Msa0544560:intron | 30.0% | |
!! | GTGATAAGTTTATTTTCCAG+TGG | + | chr4_1:33355989-33356008 | Msa0544560:intron | 30.0% |
TGAATGTGAAAGAAAACGTT+AGG | + | chr4_1:33356037-33356056 | Msa0544560:intron | 30.0% | |
TTTGATTCTAACTCTTTGAC+AGG | + | chr4_1:33356466-33356485 | Msa0544560:intron | 30.0% | |
GGGATGAAAAATTGAAGAAA+AGG | - | chr4_1:33356558-33356577 | None:intergenic | 30.0% | |
! | ATAAAGGGGAATTTAAGATG+GGG | - | chr4_1:33356578-33356597 | None:intergenic | 30.0% |
! | TCTAATCTCATTTTCTCTCT+GGG | + | chr4_1:33356672-33356691 | Msa0544560:intron | 30.0% |
AGAAGGATATTAAACCTCAT+TGG | - | chr4_1:33356788-33356807 | None:intergenic | 30.0% | |
TTTAGAGGAATTACAGTACT+TGG | - | chr4_1:33357083-33357102 | None:intergenic | 30.0% | |
ATTCTTACGATTCCATTTCT+TGG | - | chr4_1:33352265-33352284 | None:intergenic | 30.0% | |
! | TATTTGTTGCAGTTTCTTCA+AGG | + | chr4_1:33352407-33352426 | Msa0544560:intron | 30.0% |
CATTTGATGAACATCATTTG+AGG | + | chr4_1:33358088-33358107 | Msa0544560:CDS | 30.0% | |
TTTGCATCATCTCTAATGGA+TGG | - | chr4_1:33352082-33352101 | None:intergenic | 35.0% | |
! | GTGTTTTGCATCATCTCTAA+TGG | - | chr4_1:33352086-33352105 | None:intergenic | 35.0% |
!! | CGGTGATAACGTTTTCTTTT+GGG | - | chr4_1:33352224-33352243 | None:intergenic | 35.0% |
!! | AACCAAAACTTGACTTGCAA+AGG | - | chr4_1:33352492-33352511 | None:intergenic | 35.0% |
AAACAAAAGGACTCAGATGA+AGG | + | chr4_1:33352515-33352534 | Msa0544560:CDS | 35.0% | |
!!! | TGTGTTTTTGGTAAAGGAGT+TGG | + | chr4_1:33352584-33352603 | Msa0544560:intron | 35.0% |
AGCTGATAACATGAGGTATA+GGG | + | chr4_1:33352671-33352690 | Msa0544560:intron | 35.0% | |
! | CTGTTTTCTTCTAAGCACAA+GGG | - | chr4_1:33352710-33352729 | None:intergenic | 35.0% |
! | ACTGTTTTCTTCTAAGCACA+AGG | - | chr4_1:33352711-33352730 | None:intergenic | 35.0% |
! | AGAAGAAAACAGTTTTCCGT+TGG | + | chr4_1:33352718-33352737 | Msa0544560:intron | 35.0% |
TATCCTTACTAGCGAAAAGA+CGG | - | chr4_1:33353093-33353112 | None:intergenic | 35.0% | |
ATCCTTACTAGCAAAAAGAC+GGG | - | chr4_1:33353162-33353181 | None:intergenic | 35.0% | |
!! | TGCTTCAATTTTTAGAGGAG+GGG | - | chr4_1:33353223-33353242 | None:intergenic | 35.0% |
!!! | TTGATTCAAGAGTTTTGGAG+TGG | - | chr4_1:33353277-33353296 | None:intergenic | 35.0% |
GAATCAAACAGACCATTAGT+TGG | + | chr4_1:33353290-33353309 | Msa0544560:intron | 35.0% | |
AGACCATTAGTTGGTTACTT+TGG | + | chr4_1:33353299-33353318 | Msa0544560:intron | 35.0% | |
AAGCCAAAGTAACCAACTAA+TGG | - | chr4_1:33353305-33353324 | None:intergenic | 35.0% | |
!! | GCTTTTAAGTCGCATTCTAT+AGG | + | chr4_1:33353321-33353340 | Msa0544560:intron | 35.0% |
! | TGTTTGATGGTTATGATTGG+AGG | + | chr4_1:33353468-33353487 | Msa0544560:intron | 35.0% |
! | GTTTGATGGTTATGATTGGA+GGG | + | chr4_1:33353469-33353488 | Msa0544560:intron | 35.0% |
! | TTTGAGTTCTAACTGAAACG+TGG | - | chr4_1:33354262-33354281 | None:intergenic | 35.0% |
CTGATCTAAAAGAGATGAAG+CGG | + | chr4_1:33354349-33354368 | Msa0544560:intron | 35.0% | |
! | TATACATAGTTCGACTCGAT+TGG | - | chr4_1:33354544-33354563 | None:intergenic | 35.0% |
GATAATTAGCTCGTTGAACT+TGG | - | chr4_1:33354636-33354655 | None:intergenic | 35.0% | |
GAGTTAACTCGACTAAAGTT+TGG | - | chr4_1:33354668-33354687 | None:intergenic | 35.0% | |
AAACTATCCATTGTCGAACA+TGG | + | chr4_1:33354847-33354866 | Msa0544560:intron | 35.0% | |
TACATAACCATGTTCGACAA+TGG | - | chr4_1:33354857-33354876 | None:intergenic | 35.0% | |
CATGCAACAATGAATAGACA+TGG | + | chr4_1:33354926-33354945 | Msa0544560:intron | 35.0% | |
AATAAGGTTCTCATGGAGAT+GGG | + | chr4_1:33355097-33355116 | Msa0544560:intron | 35.0% | |
CATTCTGGATAGATGTCTAT+GGG | - | chr4_1:33355296-33355315 | None:intergenic | 35.0% | |
TCATTCTGGATAGATGTCTA+TGG | - | chr4_1:33355297-33355316 | None:intergenic | 35.0% | |
! | TGATTTTGTGCAACCAATGA+CGG | - | chr4_1:33355424-33355443 | None:intergenic | 35.0% |
! | AATTGAAGAGCGTATTGAGA+GGG | - | chr4_1:33355574-33355593 | None:intergenic | 35.0% |
! | TAATTGAAGAGCGTATTGAG+AGG | - | chr4_1:33355575-33355594 | None:intergenic | 35.0% |
! | TTTGCAAAATGAGACTAGCT+AGG | + | chr4_1:33355903-33355922 | Msa0544560:intron | 35.0% |
! | TTGCAAAATGAGACTAGCTA+GGG | + | chr4_1:33355904-33355923 | Msa0544560:intron | 35.0% |
GCTTAATCCTGAACTGAAAA+AGG | + | chr4_1:33356345-33356364 | Msa0544560:intron | 35.0% | |
TTCTTGCTTATATCCTGCAA+GGG | - | chr4_1:33356377-33356396 | None:intergenic | 35.0% | |
TTTCTTGCTTATATCCTGCA+AGG | - | chr4_1:33356378-33356397 | None:intergenic | 35.0% | |
ATTCTAACTCTTTGACAGGT+TGG | + | chr4_1:33356470-33356489 | Msa0544560:intron | 35.0% | |
GAGAAAATGAGATTAGAGAG+TGG | - | chr4_1:33356669-33356688 | None:intergenic | 35.0% | |
! | CTCTAATCTCATTTTCTCTC+TGG | + | chr4_1:33356671-33356690 | Msa0544560:intron | 35.0% |
!! | GTGTATTTAGAGTATCGAGA+AGG | - | chr4_1:33356805-33356824 | None:intergenic | 35.0% |
TGAAAAACTACAACAAGGCT+TGG | + | chr4_1:33357304-33357323 | Msa0544560:intron | 35.0% | |
GAAAAACTACAACAAGGCTT+GGG | + | chr4_1:33357305-33357324 | Msa0544560:intron | 35.0% | |
AATGTTTCAGTCAAACCTCT+TGG | + | chr4_1:33357366-33357385 | Msa0544560:intron | 35.0% | |
TTTGCATCATCTCTAATGGA+TGG | - | chr4_1:33352082-33352101 | None:intergenic | 35.0% | |
! | GTGTTTTGCATCATCTCTAA+TGG | - | chr4_1:33352086-33352105 | None:intergenic | 35.0% |
!! | CGGTGATAACGTTTTCTTTT+GGG | - | chr4_1:33352224-33352243 | None:intergenic | 35.0% |
!! | AACCAAAACTTGACTTGCAA+AGG | - | chr4_1:33352492-33352511 | None:intergenic | 35.0% |
AAACAAAAGGACTCAGATGA+AGG | + | chr4_1:33352515-33352534 | Msa0544560:CDS | 35.0% | |
!!! | TGTGTTTTTGGTAAAGGAGT+TGG | + | chr4_1:33352584-33352603 | Msa0544560:intron | 35.0% |
AGCTGATAACATGAGGTATA+GGG | + | chr4_1:33352671-33352690 | Msa0544560:intron | 35.0% | |
AATGCTTCATGTCCTAATTG+TGG | + | chr4_1:33358039-33358058 | Msa0544560:CDS | 35.0% | |
! | ATTTGAGGCTTGAAAATGCA+AGG | + | chr4_1:33358103-33358122 | Msa0544560:CDS | 35.0% |
! | ATGGTTTTCACTGCAGGATT+TGG | - | chr4_1:33352162-33352181 | None:intergenic | 40.0% |
!!! | TAACGTTTTCTTTTGGGACG+TGG | - | chr4_1:33352218-33352237 | None:intergenic | 40.0% |
!! | GCGGTGATAACGTTTTCTTT+TGG | - | chr4_1:33352225-33352244 | None:intergenic | 40.0% |
ACGATTCCATTTCTTGGATC+TGG | - | chr4_1:33352259-33352278 | None:intergenic | 40.0% | |
AAGGAGTTAAGCAGAGAGTT+AGG | + | chr4_1:33352459-33352478 | Msa0544560:CDS | 40.0% | |
AGGAGTTAAGCAGAGAGTTA+GGG | + | chr4_1:33352460-33352479 | Msa0544560:CDS | 40.0% | |
! | AGCCTTTGCAAGTCAAGTTT+TGG | + | chr4_1:33352487-33352506 | Msa0544560:CDS | 40.0% |
AGCTTAGAGCTGATAACATG+AGG | + | chr4_1:33352664-33352683 | Msa0544560:intron | 40.0% | |
GAGCTGATAACATGAGGTAT+AGG | + | chr4_1:33352670-33352689 | Msa0544560:intron | 40.0% | |
CTGCCCTTGTGACTTATTTA+TGG | - | chr4_1:33352761-33352780 | None:intergenic | 40.0% | |
GAAAGATAGATTCCGGCATT+GGG | - | chr4_1:33352790-33352809 | None:intergenic | 40.0% | |
TGAAAGATAGATTCCGGCAT+TGG | - | chr4_1:33352791-33352810 | None:intergenic | 40.0% | |
ATGCCGGAATCTATCTTTCA+CGG | + | chr4_1:33352791-33352810 | Msa0544560:intron | 40.0% | |
ATGCCGTGAAAGATAGATTC+CGG | - | chr4_1:33352797-33352816 | None:intergenic | 40.0% | |
ATCCTTACTAGCGAAAAGAC+GGG | - | chr4_1:33353092-33353111 | None:intergenic | 40.0% | |
!! | CTTCAATTTTTAGAGGAGGG+GGG | - | chr4_1:33353221-33353240 | None:intergenic | 40.0% |
!! | GCTTCAATTTTTAGAGGAGG+GGG | - | chr4_1:33353222-33353241 | None:intergenic | 40.0% |
!!! | TTCAAGAGTTTTGGAGTGGA+GGG | - | chr4_1:33353273-33353292 | None:intergenic | 40.0% |
!!! | ATTCAAGAGTTTTGGAGTGG+AGG | - | chr4_1:33353274-33353293 | None:intergenic | 40.0% |
! | GTTGATATGCTTGCTAGTCT+TGG | + | chr4_1:33353440-33353459 | Msa0544560:intron | 40.0% |
!! | AGTCTTGGCCTTTTGTTTGA+TGG | + | chr4_1:33353455-33353474 | Msa0544560:intron | 40.0% |
GCCCAAAGATATCGTTTGAA+TGG | - | chr4_1:33353790-33353809 | None:intergenic | 40.0% | |
GTTATGGGTAAAGAAGTCAG+AGG | - | chr4_1:33354286-33354305 | None:intergenic | 40.0% | |
ACATAACATATGTTGGGCGA+TGG | - | chr4_1:33354327-33354346 | None:intergenic | 40.0% | |
TTCCGGGTATAAAATGTTCC+TGG | + | chr4_1:33355041-33355060 | Msa0544560:intron | 40.0% | |
TCCGGGTATAAAATGTTCCT+GGG | + | chr4_1:33355042-33355061 | Msa0544560:intron | 40.0% | |
! | TCCCAGGAACATTTTATACC+CGG | - | chr4_1:33355046-33355065 | None:intergenic | 40.0% |
! | GGGAAAACTTTTCTATTCCC+AGG | - | chr4_1:33355062-33355081 | None:intergenic | 40.0% |
TGGTGTGAATAAGGTTCTCA+TGG | + | chr4_1:33355090-33355109 | Msa0544560:intron | 40.0% | |
GAATAAGGTTCTCATGGAGA+TGG | + | chr4_1:33355096-33355115 | Msa0544560:intron | 40.0% | |
TGTCTATGGGTGTGTTTGTT+TGG | - | chr4_1:33355283-33355302 | None:intergenic | 40.0% | |
! | TTGAATTTGGTAGCCGTCAT+TGG | + | chr4_1:33355408-33355427 | Msa0544560:intron | 40.0% |
! | CATTGGTTGCACAAAATCAC+CGG | + | chr4_1:33355425-33355444 | Msa0544560:intron | 40.0% |
! | AATGCATTGCTTGCTACTCA+GGG | - | chr4_1:33355526-33355545 | None:intergenic | 40.0% |
! | AAATGCATTGCTTGCTACTC+AGG | - | chr4_1:33355527-33355546 | None:intergenic | 40.0% |
GGTGCAATTGCATTAAATGG+AGG | - | chr4_1:33355553-33355572 | None:intergenic | 40.0% | |
! | GAGGGTGCAATTGCATTAAA+TGG | - | chr4_1:33355556-33355575 | None:intergenic | 40.0% |
GGAACAGATAGAGGAAGAAA+GGG | - | chr4_1:33355606-33355625 | None:intergenic | 40.0% | |
AAGGAAGAAAGAGAGAGAGT+GGG | - | chr4_1:33355628-33355647 | None:intergenic | 40.0% | |
TGAGAAAAGAAGAGAGATCC+TGG | - | chr4_1:33355744-33355763 | None:intergenic | 40.0% | |
!!! | GTTTGCTCCTTTTTCAGTTC+AGG | - | chr4_1:33356355-33356374 | None:intergenic | 40.0% |
GTGAGAAATAGTAGCAACGT+TGG | + | chr4_1:33356422-33356441 | Msa0544560:intron | 40.0% | |
!! | TAACTCTTTGACAGGTTGGT+AGG | + | chr4_1:33356474-33356493 | Msa0544560:intron | 40.0% |
! | ATGGTTTTCACTGCAGGATT+TGG | - | chr4_1:33352162-33352181 | None:intergenic | 40.0% |
!!! | TAACGTTTTCTTTTGGGACG+TGG | - | chr4_1:33352218-33352237 | None:intergenic | 40.0% |
!! | GCGGTGATAACGTTTTCTTT+TGG | - | chr4_1:33352225-33352244 | None:intergenic | 40.0% |
ACGATTCCATTTCTTGGATC+TGG | - | chr4_1:33352259-33352278 | None:intergenic | 40.0% | |
AAGGAGTTAAGCAGAGAGTT+AGG | + | chr4_1:33352459-33352478 | Msa0544560:CDS | 40.0% | |
AGGAGTTAAGCAGAGAGTTA+GGG | + | chr4_1:33352460-33352479 | Msa0544560:CDS | 40.0% | |
! | AGCCTTTGCAAGTCAAGTTT+TGG | + | chr4_1:33352487-33352506 | Msa0544560:CDS | 40.0% |
AGCTTAGAGCTGATAACATG+AGG | + | chr4_1:33352664-33352683 | Msa0544560:intron | 40.0% | |
GAGCTGATAACATGAGGTAT+AGG | + | chr4_1:33352670-33352689 | Msa0544560:intron | 40.0% | |
GACATTTCACCTATAGCTGT+TGG | - | chr4_1:33358069-33358088 | None:intergenic | 40.0% | |
AAATGCAAGGCTAAGAGAAG+AGG | + | chr4_1:33358116-33358135 | Msa0544560:CDS | 40.0% | |
! | TTTCGAAGCACTCGTCTTCT+CGG | - | chr4_1:33352133-33352152 | None:intergenic | 45.0% |
TCCTGCAGTGAAAACCATGA+AGG | + | chr4_1:33352164-33352183 | Msa0544560:CDS | 45.0% | |
! | ACCTTCATGGTTTTCACTGC+AGG | - | chr4_1:33352168-33352187 | None:intergenic | 45.0% |
TGCAGTGAAAACCATGAAGG+TGG | + | chr4_1:33352167-33352186 | Msa0544560:CDS | 45.0% | |
TCAGCACCAGATCCAAGAAA+TGG | + | chr4_1:33352250-33352269 | Msa0544560:CDS | 45.0% | |
CCTTCCTTTGCTTGTCATCT+GGG | - | chr4_1:33352443-33352462 | None:intergenic | 45.0% | |
TCCTTCCTTTGCTTGTCATC+TGG | - | chr4_1:33352444-33352463 | None:intergenic | 45.0% | |
GCAGACACAACATGAACGTT+CGG | + | chr4_1:33352617-33352636 | Msa0544560:intron | 45.0% | |
! | ATAGATTCCGGCATTGGGAA+TGG | - | chr4_1:33352785-33352804 | None:intergenic | 45.0% |
!! | TTCACGGCATGTTTTTGCCA+TGG | + | chr4_1:33352807-33352826 | Msa0544560:intron | 45.0% |
! | TGCCCGTCTTTTTGCTAGTA+AGG | + | chr4_1:33353157-33353176 | Msa0544560:intron | 45.0% |
!! | AATTTTTAGAGGAGGGGGGA+GGG | - | chr4_1:33353217-33353236 | None:intergenic | 45.0% |
!!! | TCAAGAGTTTTGGAGTGGAG+GGG | - | chr4_1:33353272-33353291 | None:intergenic | 45.0% |
!!! | GTTTTGGTTTAGTCCCCCAA+AGG | + | chr4_1:33353677-33353696 | Msa0544560:intron | 45.0% |
TGGGCGATGGATAGTTTAAC+TGG | - | chr4_1:33354314-33354333 | None:intergenic | 45.0% | |
GTTAAGCACGACGCTCTATA+GGG | - | chr4_1:33354704-33354723 | None:intergenic | 45.0% | |
TGTTAAGCACGACGCTCTAT+AGG | - | chr4_1:33354705-33354724 | None:intergenic | 45.0% | |
TCACACGCGCAAAATCAAGA+AGG | + | chr4_1:33355383-33355402 | Msa0544560:intron | 45.0% | |
! | ATGCATTGCTTGCTACTCAG+GGG | - | chr4_1:33355525-33355544 | None:intergenic | 45.0% |
GATAGAGGAAGAAAGGGAAG+AGG | - | chr4_1:33355600-33355619 | None:intergenic | 45.0% | |
GGGAACAGATAGAGGAAGAA+AGG | - | chr4_1:33355607-33355626 | None:intergenic | 45.0% | |
AGGAAGAAAGAGAGAGAGTG+GGG | - | chr4_1:33355627-33355646 | None:intergenic | 45.0% | |
GAAGGAAGAAAGAGAGAGAG+TGG | - | chr4_1:33355629-33355648 | None:intergenic | 45.0% | |
!! | AGAGAGAGAGAGAGCATTGA+AGG | - | chr4_1:33355647-33355666 | None:intergenic | 45.0% |
!!! | GAGAGATCCTGGTTTTGAGA+AGG | - | chr4_1:33355733-33355752 | None:intergenic | 45.0% |
AAAAAGGAGCAAACCCTTGC+AGG | + | chr4_1:33356361-33356380 | Msa0544560:intron | 45.0% | |
! | TTTCGAAGCACTCGTCTTCT+CGG | - | chr4_1:33352133-33352152 | None:intergenic | 45.0% |
TCCTGCAGTGAAAACCATGA+AGG | + | chr4_1:33352164-33352183 | Msa0544560:CDS | 45.0% | |
! | ACCTTCATGGTTTTCACTGC+AGG | - | chr4_1:33352168-33352187 | None:intergenic | 45.0% |
TGCAGTGAAAACCATGAAGG+TGG | + | chr4_1:33352167-33352186 | Msa0544560:CDS | 45.0% | |
TCAGCACCAGATCCAAGAAA+TGG | + | chr4_1:33352250-33352269 | Msa0544560:CDS | 45.0% | |
CCTTCCTTTGCTTGTCATCT+GGG | - | chr4_1:33352443-33352462 | None:intergenic | 45.0% | |
TCCTTCCTTTGCTTGTCATC+TGG | - | chr4_1:33352444-33352463 | None:intergenic | 45.0% | |
GCAGACACAACATGAACGTT+CGG | + | chr4_1:33352617-33352636 | Msa0544560:intron | 45.0% | |
GCTTCATGTCCTAATTGTGG+TGG | + | chr4_1:33358042-33358061 | Msa0544560:CDS | 45.0% | |
!!! | TATTTAAGAAATTTAATTTT+CGG | + | chr4_1:33354582-33354601 | Msa0544560:intron | 5.0% |
!! | AAATGAAAATAAAATAAAAA+TGG | + | chr4_1:33355482-33355501 | Msa0544560:intron | 5.0% |
!!! | TAAATTTGTTTATATTTTTA+TGG | + | chr4_1:33355940-33355959 | Msa0544560:intron | 5.0% |
!!! | AAATTTGTTTATATTTTTAT+GGG | + | chr4_1:33355941-33355960 | Msa0544560:intron | 5.0% |
!!! | AACTTTTTATAATTATTATT+TGG | - | chr4_1:33357147-33357166 | None:intergenic | 5.0% |
CAGTCAAACCTCTTGGAAGC+TGG | + | chr4_1:33352050-33352069 | Msa0544560:CDS | 50.0% | |
ACTCGTCTTCTCGGATTCGA+GGG | - | chr4_1:33352124-33352143 | None:intergenic | 50.0% | |
GAAGACGAGTGCTTCGAAAG+TGG | + | chr4_1:33352134-33352153 | Msa0544560:CDS | 50.0% | |
GCTGCTTCTGGTGAAGAACA+AGG | + | chr4_1:33352191-33352210 | Msa0544560:CDS | 50.0% | |
CTTTGCTTGTCATCTGGGTG+TGG | - | chr4_1:33352438-33352457 | None:intergenic | 50.0% | |
CACACCCAGATGACAAGCAA+AGG | + | chr4_1:33352436-33352455 | Msa0544560:CDS | 50.0% | |
CCCAGATGACAAGCAAAGGA+AGG | + | chr4_1:33352440-33352459 | Msa0544560:CDS | 50.0% | |
CATGAGGTATAGGGAAGCTC+AGG | + | chr4_1:33352680-33352699 | Msa0544560:intron | 50.0% | |
! | TGCCCGTCTTTTCGCTAGTA+AGG | + | chr4_1:33353087-33353106 | Msa0544560:intron | 50.0% |
TAGCAAAAAGACGGGCACGA+GGG | - | chr4_1:33353154-33353173 | None:intergenic | 50.0% | |
!! | ATTTTTAGAGGAGGGGGGAG+GGG | - | chr4_1:33353216-33353235 | None:intergenic | 50.0% |
!! | CAATTTTTAGAGGAGGGGGG+AGG | - | chr4_1:33353218-33353237 | None:intergenic | 50.0% |
CAAGCACGACGCTGTAAGAA+TGG | - | chr4_1:33354168-33354187 | None:intergenic | 50.0% | |
! | CGGTTCAAGTTCGGCTCATT+AGG | + | chr4_1:33354602-33354621 | Msa0544560:intron | 50.0% |
AGAGAGTGGGGAACAGATAG+AGG | - | chr4_1:33355615-33355634 | None:intergenic | 50.0% | |
CAGTCAAACCTCTTGGAAGC+TGG | + | chr4_1:33352050-33352069 | Msa0544560:CDS | 50.0% | |
ACTCGTCTTCTCGGATTCGA+GGG | - | chr4_1:33352124-33352143 | None:intergenic | 50.0% | |
GAAGACGAGTGCTTCGAAAG+TGG | + | chr4_1:33352134-33352153 | Msa0544560:CDS | 50.0% | |
GCTGCTTCTGGTGAAGAACA+AGG | + | chr4_1:33352191-33352210 | Msa0544560:CDS | 50.0% | |
CTTTGCTTGTCATCTGGGTG+TGG | - | chr4_1:33352438-33352457 | None:intergenic | 50.0% | |
CACACCCAGATGACAAGCAA+AGG | + | chr4_1:33352436-33352455 | Msa0544560:CDS | 50.0% | |
CCCAGATGACAAGCAAAGGA+AGG | + | chr4_1:33352440-33352459 | Msa0544560:CDS | 50.0% | |
GCTGTTGGACCACCACAATT+AGG | - | chr4_1:33358054-33358073 | None:intergenic | 50.0% | |
TGTGGTGGTCCAACAGCTAT+AGG | + | chr4_1:33358057-33358076 | Msa0544560:CDS | 50.0% | |
GGAACTGACCAGCTTCCAAG+AGG | - | chr4_1:33352061-33352080 | None:intergenic | 55.0% | |
CACTCGTCTTCTCGGATTCG+AGG | - | chr4_1:33352125-33352144 | None:intergenic | 55.0% | |
CAGAAGCAGCACCACCTTCA+TGG | - | chr4_1:33352181-33352200 | None:intergenic | 55.0% | |
!! | CATGAAGGTGGTGCTGCTTC+TGG | + | chr4_1:33352179-33352198 | Msa0544560:CDS | 55.0% |
! | CTTGGATCTGGTGCTGAGTG+TGG | - | chr4_1:33352247-33352266 | None:intergenic | 55.0% |
AGCAAAAAGACGGGCACGAG+GGG | - | chr4_1:33353153-33353172 | None:intergenic | 55.0% | |
CTAGCAAAAAGACGGGCACG+AGG | - | chr4_1:33353155-33353174 | None:intergenic | 55.0% | |
!!! | GAGTTTTGGAGTGGAGGGGA+GGG | - | chr4_1:33353268-33353287 | None:intergenic | 55.0% |
!!! | AGAGTTTTGGAGTGGAGGGG+AGG | - | chr4_1:33353269-33353288 | None:intergenic | 55.0% |
AGCACGACGCTCTATAGGGT+TGG | - | chr4_1:33354700-33354719 | None:intergenic | 55.0% | |
GGAACTGACCAGCTTCCAAG+AGG | - | chr4_1:33352061-33352080 | None:intergenic | 55.0% | |
CACTCGTCTTCTCGGATTCG+AGG | - | chr4_1:33352125-33352144 | None:intergenic | 55.0% | |
CAGAAGCAGCACCACCTTCA+TGG | - | chr4_1:33352181-33352200 | None:intergenic | 55.0% | |
!! | CATGAAGGTGGTGCTGCTTC+TGG | + | chr4_1:33352179-33352198 | Msa0544560:CDS | 55.0% |
! | CTTGGATCTGGTGCTGAGTG+TGG | - | chr4_1:33352247-33352266 | None:intergenic | 55.0% |
! | GGATCTGGTGCTGAGTGTGG+CGG | - | chr4_1:33352244-33352263 | None:intergenic | 60.0% |
GGGCAGACCATTCCCAATGC+CGG | + | chr4_1:33352775-33352794 | Msa0544560:intron | 60.0% | |
CAAAAAGACGGGCACGAGGG+GGG | - | chr4_1:33353151-33353170 | None:intergenic | 60.0% | |
GCAAAAAGACGGGCACGAGG+GGG | - | chr4_1:33353152-33353171 | None:intergenic | 60.0% | |
! | GGATCTGGTGCTGAGTGTGG+CGG | - | chr4_1:33352244-33352263 | None:intergenic | 60.0% |
AAGACGGGCACGAGGGGGGA+GGG | - | chr4_1:33353147-33353166 | None:intergenic | 70.0% | |
AAAGACGGGCACGAGGGGGG+AGG | - | chr4_1:33353148-33353167 | None:intergenic | 70.0% | |
AGACGGGCACGAGGGGGGAG+GGG | - | chr4_1:33353146-33353165 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 33352044 | 33358146 | 33352044 | ID=Msa0544560;Name=Msa0544560 |
chr4_1 | mRNA | 33352044 | 33358146 | 33352044 | ID=Msa0544560-mRNA-1;Parent=Msa0544560;Name=Msa0544560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.4|1|0.75|0.8|5|0|296 |
chr4_1 | exon | 33352044 | 33352276 | 33352044 | ID=Msa0544560-mRNA-1:exon:8515;Parent=Msa0544560-mRNA-1 |
chr4_1 | exon | 33352419 | 33352536 | 33352419 | ID=Msa0544560-mRNA-1:exon:8516;Parent=Msa0544560-mRNA-1 |
chr4_1 | exon | 33357376 | 33357599 | 33357376 | ID=Msa0544560-mRNA-1:exon:8517;Parent=Msa0544560-mRNA-1 |
chr4_1 | exon | 33357745 | 33357862 | 33357745 | ID=Msa0544560-mRNA-1:exon:8518;Parent=Msa0544560-mRNA-1 |
chr4_1 | exon | 33357949 | 33358146 | 33357949 | ID=Msa0544560-mRNA-1:exon:8519;Parent=Msa0544560-mRNA-1 |
chr4_1 | CDS | 33352044 | 33352276 | 33352044 | ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1 |
chr4_1 | CDS | 33352419 | 33352536 | 33352419 | ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1 |
chr4_1 | CDS | 33357376 | 33357599 | 33357376 | ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1 |
chr4_1 | CDS | 33357745 | 33357862 | 33357745 | ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1 |
chr4_1 | CDS | 33357949 | 33358146 | 33357949 | ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1 |
Gene Sequence |
Protein sequence |