AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544560 MtrunA17_Chr4g0024351 97.765 179 3 1 117 295 3 180 5.13e-123 368
Msa0544560 MtrunA17_Chr4g0024351 98.305 118 1 1 1 118 1 117 8.73e-76 245
Msa0544560 MtrunA17_Chr2g0322731 79.781 183 31 2 119 295 38 220 1.00e-96 301
Msa0544560 MtrunA17_Chr2g0322731 75.410 122 24 2 3 118 36 157 2.07e-53 186
Msa0544560 MtrunA17_Chr8g0350321 61.644 146 51 2 153 295 92 235 8.77e-53 184
Msa0544560 MtrunA17_Chr8g0350321 62.353 85 27 2 39 120 92 174 1.49e-25 106
Msa0544560 MtrunA17_Chr7g0246631 61.538 143 54 1 154 295 69 211 3.42e-51 179
Msa0544560 MtrunA17_Chr7g0246631 60.976 82 31 1 40 120 69 150 3.85e-24 102
Msa0544560 MtrunA17_Chr5g0410711 67.213 122 39 1 175 295 89 210 4.69e-51 179
Msa0544560 MtrunA17_Chr5g0410711 77.586 58 13 0 61 118 89 146 5.57e-25 104
Msa0544560 MtrunA17_Chr1g0203671 57.962 157 62 2 142 295 60 215 1.44e-49 175
Msa0544560 MtrunA17_Chr1g0203671 60.417 96 34 2 28 120 60 154 1.13e-25 107
Msa0544560 MtrunA17_Chr6g0481041 55.705 149 54 2 158 295 2 149 1.58e-49 174
Msa0544560 MtrunA17_Chr6g0481041 55.814 86 26 2 44 118 2 86 1.85e-23 100
Msa0544560 MtrunA17_Chr6g0472471 55.696 158 63 3 142 295 35 189 2.67e-47 169
Msa0544560 MtrunA17_Chr6g0472471 54.639 97 37 3 28 120 35 128 4.41e-23 99.4
Msa0544560 MtrunA17_Chr2g0331581 58.824 119 47 1 179 295 143 261 1.49e-39 147
Msa0544560 MtrunA17_Chr2g0331581 68.519 54 17 0 65 118 143 196 1.10e-19 89.4
Msa0544560 MtrunA17_Chr5g0394111 56.140 114 49 1 182 295 40 152 4.43e-36 136
Msa0544560 MtrunA17_Chr5g0394111 64.000 50 18 0 68 117 40 89 3.18e-17 82.0
Msa0544560 MtrunA17_Chr5g0419821 50.000 122 60 1 175 295 33 154 3.70e-35 125
Msa0544560 MtrunA17_Chr5g0419821 55.738 61 26 1 61 120 33 93 1.47e-15 73.2
Msa0544560 MtrunA17_Chr7g0224481 45.324 139 62 2 158 296 2 126 4.80e-34 126
Msa0544560 MtrunA17_Chr7g0224481 46.667 75 37 1 44 118 2 73 6.22e-17 79.7
Msa0544560 MtrunA17_Chr7g0224451 46.429 140 59 3 158 296 2 126 1.80e-33 127
Msa0544560 MtrunA17_Chr7g0224451 48.684 76 34 2 44 118 2 73 8.23e-17 80.1
Msa0544560 MtrunA17_Chr1g0205981 53.030 66 31 0 230 295 1 66 1.82e-16 76.3
Msa0544560 MtrunA17_Chr2g0326731 42.500 80 39 2 178 253 23 99 1.76e-11 64.7
Msa0544560 MtrunA17_Chr4g0028991 35.714 98 55 2 178 267 28 125 6.86e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544560 AT1G05230.12 79.355 155 28 2 143 295 32 184 9.10e-78 248
Msa0544560 AT1G05230.12 60.976 123 41 3 1 118 1 121 1.75e-35 135
Msa0544560 AT1G05230.8 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.8 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.4 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.4 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.9 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.9 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.10 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.10 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.7 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.7 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.11 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.11 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.2 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.2 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.6 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.6 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.5 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.5 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.1 79.355 155 28 2 143 295 32 184 3.40e-77 249
Msa0544560 AT1G05230.1 73.913 92 20 2 29 118 32 121 2.06e-35 135
Msa0544560 AT1G05230.3 79.355 155 28 2 143 295 32 184 3.61e-77 249
Msa0544560 AT1G05230.3 73.913 92 20 2 29 118 32 121 2.17e-35 135
Msa0544560 AT4G04890.2 68.862 167 46 4 133 295 18 182 2.79e-68 226
Msa0544560 AT4G04890.2 59.350 123 41 6 1 118 1 119 1.05e-32 127
Msa0544560 AT4G04890.1 68.862 167 46 4 133 295 18 182 2.79e-68 226
Msa0544560 AT4G04890.1 59.350 123 41 6 1 118 1 119 1.05e-32 127
Msa0544560 AT4G21750.2 68.208 173 49 4 127 295 12 182 1.88e-67 224
Msa0544560 AT4G21750.2 59.836 122 42 5 1 118 1 119 3.82e-31 123
Msa0544560 AT4G21750.1 68.208 173 49 4 127 295 12 182 1.88e-67 224
Msa0544560 AT4G21750.1 59.836 122 42 5 1 118 1 119 3.82e-31 123
Msa0544560 AT4G21750.3 68.208 173 49 4 127 295 12 182 1.88e-67 224
Msa0544560 AT4G21750.3 59.836 122 42 5 1 118 1 119 3.82e-31 123
Msa0544560 AT4G21750.4 68.208 173 49 4 127 295 12 182 1.88e-67 224
Msa0544560 AT4G21750.4 59.836 122 42 5 1 118 1 119 3.82e-31 123
Msa0544560 AT2G32370.1 63.333 150 52 2 146 295 42 188 6.24e-57 195
Msa0544560 AT2G32370.1 63.218 87 29 2 32 118 42 125 1.14e-28 115
Msa0544560 AT4G00730.2 63.014 146 49 2 153 295 111 254 8.97e-55 187
Msa0544560 AT4G00730.2 63.529 85 26 2 39 120 111 193 1.87e-25 106
Msa0544560 AT4G00730.1 63.014 146 49 2 153 295 111 254 5.69e-54 188
Msa0544560 AT4G00730.1 63.529 85 26 2 39 120 111 193 1.36e-25 107
Msa0544560 AT3G61150.1 60.000 145 56 1 153 295 86 230 1.31e-51 181
Msa0544560 AT3G61150.1 57.143 84 34 1 39 120 86 169 8.41e-24 101
Msa0544560 AT1G73360.1 66.116 121 41 0 175 295 32 152 3.09e-50 177
Msa0544560 AT1G73360.1 74.138 58 15 0 61 118 32 89 9.43e-24 101
Msa0544560 AT5G46880.3 62.500 128 46 1 168 295 104 229 4.34e-47 169
Msa0544560 AT5G46880.3 75.385 65 16 0 54 118 104 168 1.52e-25 107
Msa0544560 AT5G46880.1 62.500 128 46 1 168 295 104 229 4.34e-47 169
Msa0544560 AT5G46880.1 75.385 65 16 0 54 118 104 168 1.52e-25 107
Msa0544560 AT5G46880.2 62.500 128 46 1 168 295 104 229 4.34e-47 169
Msa0544560 AT5G46880.2 75.385 65 16 0 54 118 104 168 1.52e-25 107
Msa0544560 AT5G52170.3 53.704 162 65 5 140 295 20 177 9.09e-44 158
Msa0544560 AT5G52170.3 55.446 101 35 5 26 120 20 116 6.62e-22 96.3
Msa0544560 AT5G52170.1 53.704 162 65 5 140 295 20 177 9.09e-44 158
Msa0544560 AT5G52170.1 55.446 101 35 5 26 120 20 116 6.62e-22 96.3
Msa0544560 AT5G52170.2 53.704 162 65 5 140 295 20 177 1.02e-43 158
Msa0544560 AT5G52170.2 55.446 101 35 5 26 120 20 116 6.83e-22 96.3
Msa0544560 AT1G17920.2 54.676 139 59 1 157 295 7 141 6.29e-42 153
Msa0544560 AT1G17920.2 60.526 76 26 1 43 118 7 78 1.45e-20 92.0
Msa0544560 AT1G17920.1 54.676 139 59 1 157 295 7 141 6.29e-42 153
Msa0544560 AT1G17920.1 60.526 76 26 1 43 118 7 78 1.45e-20 92.0
Msa0544560 AT1G79840.5 53.731 134 51 2 164 295 90 214 1.15e-37 140
Msa0544560 AT1G79840.5 60.870 69 27 0 50 118 90 158 3.16e-22 96.7
Msa0544560 AT1G79840.4 54.478 134 50 3 164 295 90 214 2.41e-37 140
Msa0544560 AT1G79840.4 60.870 69 27 0 50 118 90 158 2.49e-22 97.4
Msa0544560 AT1G79840.1 53.731 134 51 2 164 295 90 214 2.42e-37 140
Msa0544560 AT1G79840.1 60.870 69 27 0 50 118 90 158 1.88e-22 97.8
Msa0544560 AT1G79840.3 53.731 134 51 2 164 295 32 156 2.43e-37 140
Msa0544560 AT1G79840.3 60.870 69 27 0 50 118 32 100 1.97e-22 97.8
Msa0544560 AT1G79840.6 53.731 134 51 2 164 295 32 156 2.43e-37 140
Msa0544560 AT1G79840.6 60.870 69 27 0 50 118 32 100 1.97e-22 97.8
Msa0544560 AT3G03260.2 51.408 142 61 3 159 293 2 142 2.46e-37 139
Msa0544560 AT3G03260.2 42.857 119 54 3 45 152 2 117 1.39e-20 92.0
Msa0544560 AT1G79840.2 53.731 134 51 2 164 295 119 243 3.73e-37 140
Msa0544560 AT1G79840.2 60.870 69 27 0 50 118 119 187 2.44e-22 97.4
Msa0544560 AT3G03260.1 51.408 142 61 3 159 293 2 142 4.46e-37 140
Msa0544560 AT3G03260.1 42.857 119 54 3 45 152 2 117 1.26e-20 92.4
Msa0544560 AT4G17710.1 51.562 128 50 1 168 295 81 196 7.47e-36 136
Msa0544560 AT4G17710.1 64.615 65 23 0 54 118 81 145 2.39e-22 97.4
Msa0544560 AT5G17320.1 56.122 98 43 0 173 270 24 121 1.30e-31 124
Msa0544560 AT5G17320.1 63.333 60 22 0 59 118 24 83 9.98e-19 86.7
Msa0544560 AT1G34650.1 46.903 113 60 0 182 294 23 135 3.80e-28 114
Msa0544560 AT1G34650.1 60.000 50 20 0 68 117 23 72 6.00e-15 75.5
Msa0544560 AT4G25530.1 39.669 121 73 0 175 295 40 160 3.21e-20 91.3
Msa0544560 AT5G60690.1 35.714 98 55 2 178 267 25 122 7.60e-11 63.2

Find 70 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCCTTTGCTTGTCATC+TGG 0.193302 4_1:-33352441 None:intergenic
TCCTTCCTTTGCTTGTCATC+TGG 0.193302 4_1:-33357767 None:intergenic
ATTCTTACGATTCCATTTCT+TGG 0.235108 4_1:-33352262 None:intergenic
ATTCTTACGATTCCATTTCT+TGG 0.235108 4_1:-33357585 None:intergenic
AAGGAGTTAAGCAGAGAGTT+AGG 0.279953 4_1:+33352459 Msa0544560:CDS
AAGGAGTTAAGCAGAGAGTT+AGG 0.279953 4_1:+33357785 Msa0544560:CDS
CCTTCCTTTGCTTGTCATCT+GGG 0.284990 4_1:-33352440 None:intergenic
CCTTCCTTTGCTTGTCATCT+GGG 0.284990 4_1:-33357766 None:intergenic
CATGAAGGTGGTGCTGCTTC+TGG 0.302796 4_1:+33352179 Msa0544560:CDS
CATGAAGGTGGTGCTGCTTC+TGG 0.302796 4_1:+33357502 Msa0544560:CDS
TTTCGAAGCACTCGTCTTCT+CGG 0.304296 4_1:-33352130 None:intergenic
TTTCGAAGCACTCGTCTTCT+CGG 0.304296 4_1:-33357453 None:intergenic
ACGATTCCATTTCTTGGATC+TGG 0.342668 4_1:-33352256 None:intergenic
ACGATTCCATTTCTTGGATC+TGG 0.342668 4_1:-33357579 None:intergenic
AGCCTTTGCAAGTCAAGTTT+TGG 0.343226 4_1:+33352487 Msa0544560:CDS
AGCCTTTGCAAGTCAAGTTT+TGG 0.343226 4_1:+33357813 Msa0544560:CDS
GAGCTGATAACATGAGGTAT+AGG 0.357648 4_1:+33358004 Msa0544560:CDS
CAGAAGCAGCACCACCTTCA+TGG 0.382160 4_1:-33352178 None:intergenic
CAGAAGCAGCACCACCTTCA+TGG 0.382160 4_1:-33357501 None:intergenic
TGTGGTGGTCCAACAGCTAT+AGG 0.411505 4_1:+33358057 Msa0544560:CDS
CTTTGCTTGTCATCTGGGTG+TGG 0.428946 4_1:-33352435 None:intergenic
CTTTGCTTGTCATCTGGGTG+TGG 0.428946 4_1:-33357761 None:intergenic
AGCTGATAACATGAGGTATA+GGG 0.432619 4_1:+33358005 Msa0544560:CDS
GCTGTTGGACCACCACAATT+AGG 0.438343 4_1:-33358051 None:intergenic
CATTTGATGAACATCATTTG+AGG 0.446985 4_1:+33358088 Msa0544560:CDS
AATGTTTCAGTCAAACCTCT+TGG 0.448780 4_1:+33352043 None:intergenic
AATGTTTCAGTCAAACCTCT+TGG 0.448780 4_1:+33357366 Msa0544560:intron
CACTCGTCTTCTCGGATTCG+AGG 0.451326 4_1:-33352122 None:intergenic
CACTCGTCTTCTCGGATTCG+AGG 0.451326 4_1:-33357445 None:intergenic
TATTTGTTGCAGTTTCTTCA+AGG 0.453245 4_1:+33352407 Msa0544560:intron
TATTTGTTGCAGTTTCTTCA+AGG 0.453245 4_1:+33357733 Msa0544560:intron
CAGTCAAACCTCTTGGAAGC+TGG 0.469434 4_1:+33352050 Msa0544560:CDS
CAGTCAAACCTCTTGGAAGC+TGG 0.469434 4_1:+33357373 Msa0544560:intron
TCAGCACCAGATCCAAGAAA+TGG 0.471078 4_1:+33352250 Msa0544560:CDS
TCAGCACCAGATCCAAGAAA+TGG 0.471078 4_1:+33357573 Msa0544560:CDS
GACATTTCACCTATAGCTGT+TGG 0.486224 4_1:-33358066 None:intergenic
GCAGACACAACATGAACGTT+CGG 0.496911 4_1:+33357945 Msa0544560:intron
AGGAGTTAAGCAGAGAGTTA+GGG 0.515842 4_1:+33352460 Msa0544560:CDS
AGGAGTTAAGCAGAGAGTTA+GGG 0.515842 4_1:+33357786 Msa0544560:CDS
AACCAAAACTTGACTTGCAA+AGG 0.523378 4_1:-33352489 None:intergenic
AACCAAAACTTGACTTGCAA+AGG 0.523378 4_1:-33357815 None:intergenic
AAACAAAAGGACTCAGATGA+AGG 0.533633 4_1:+33352515 Msa0544560:CDS
AAACAAAAGGACTCAGATGA+AGG 0.533633 4_1:+33357841 Msa0544560:CDS
TTTGCATCATCTCTAATGGA+TGG 0.546858 4_1:-33352079 None:intergenic
TTTGCATCATCTCTAATGGA+TGG 0.546858 4_1:-33357402 None:intergenic
GAAGACGAGTGCTTCGAAAG+TGG 0.546911 4_1:+33352134 Msa0544560:CDS
GAAGACGAGTGCTTCGAAAG+TGG 0.546911 4_1:+33357457 Msa0544560:CDS
CTTGGATCTGGTGCTGAGTG+TGG 0.562215 4_1:-33352244 None:intergenic
CTTGGATCTGGTGCTGAGTG+TGG 0.562215 4_1:-33357567 None:intergenic
ATTTGAGGCTTGAAAATGCA+AGG 0.576070 4_1:+33358103 Msa0544560:CDS
ACTCGTCTTCTCGGATTCGA+GGG 0.584124 4_1:-33352121 None:intergenic
ACTCGTCTTCTCGGATTCGA+GGG 0.584124 4_1:-33357444 None:intergenic
CCCAGATGACAAGCAAAGGA+AGG 0.600252 4_1:+33352440 Msa0544560:CDS
CCCAGATGACAAGCAAAGGA+AGG 0.600252 4_1:+33357766 Msa0544560:CDS
AAATGCAAGGCTAAGAGAAG+AGG 0.619130 4_1:+33358116 Msa0544560:CDS
CACACCCAGATGACAAGCAA+AGG 0.622325 4_1:+33352436 Msa0544560:CDS
CACACCCAGATGACAAGCAA+AGG 0.622325 4_1:+33357762 Msa0544560:CDS
GCTGCTTCTGGTGAAGAACA+AGG 0.627125 4_1:+33352191 Msa0544560:CDS
GCTGCTTCTGGTGAAGAACA+AGG 0.627125 4_1:+33357514 Msa0544560:CDS
TCCTGCAGTGAAAACCATGA+AGG 0.632264 4_1:+33352164 Msa0544560:CDS
TCCTGCAGTGAAAACCATGA+AGG 0.632264 4_1:+33357487 Msa0544560:CDS
GCTTCATGTCCTAATTGTGG+TGG 0.643891 4_1:+33358042 Msa0544560:CDS
GGATCTGGTGCTGAGTGTGG+CGG 0.645442 4_1:-33352241 None:intergenic
GGATCTGGTGCTGAGTGTGG+CGG 0.645442 4_1:-33357564 None:intergenic
AGCTTAGAGCTGATAACATG+AGG 0.647699 4_1:+33357998 Msa0544560:CDS
AATGCTTCATGTCCTAATTG+TGG 0.661151 4_1:+33358039 Msa0544560:CDS
GGAACTGACCAGCTTCCAAG+AGG 0.667277 4_1:-33352058 None:intergenic
GGAACTGACCAGCTTCCAAG+AGG 0.667277 4_1:-33357381 None:intergenic
TGCAGTGAAAACCATGAAGG+TGG 0.700352 4_1:+33352167 Msa0544560:CDS
TGCAGTGAAAACCATGAAGG+TGG 0.700352 4_1:+33357490 Msa0544560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTTAAATATTAA+TGG - chr4_1:33353015-33353034 None:intergenic 0.0%
!! AAAAAATTTATAATATTATA+TGG - chr4_1:33357272-33357291 None:intergenic 0.0%
!!! TATATATGATACTATTTTTT+GGG + chr4_1:33352538-33352557 Msa0544560:intron 10.0%
!! TTCTTTATTAAAAACATTTA+CGG - chr4_1:33353879-33353898 None:intergenic 10.0%
!! TAAAGATAATAAATTTCTTA+AGG + chr4_1:33354050-33354069 Msa0544560:intron 10.0%
!!! ATTATGAAAATTTCTTTTAA+TGG + chr4_1:33354728-33354747 Msa0544560:intron 10.0%
!!! TTTTGAGTTTAAATTAAAAT+AGG - chr4_1:33354793-33354812 None:intergenic 10.0%
!! TTAAAAATAAGGAATATAAT+AGG - chr4_1:33355143-33355162 None:intergenic 10.0%
!!! TATTATATTCCTTATTTTTA+AGG + chr4_1:33355142-33355161 Msa0544560:intron 10.0%
!!! AATTTGTTTATATTTTTATG+GGG + chr4_1:33355942-33355961 Msa0544560:intron 10.0%
!! AAACATATTTACTTAAAAAT+AGG + chr4_1:33356075-33356094 Msa0544560:intron 10.0%
!!! GAAAATTTTGATAAAATAAT+TGG - chr4_1:33356996-33357015 None:intergenic 10.0%
!!! ATATATGATACTATTTTTTT+TGG + chr4_1:33357865-33357884 Msa0544560:intron 10.0%
!!! GTATATATGATACTATTTTT+TGG + chr4_1:33352537-33352556 Msa0544560:intron 15.0%
!! TTGTTAATAACAAAAAATCT+CGG + chr4_1:33353816-33353835 Msa0544560:intron 15.0%
!!! ATTTTCTTTAGTAATTATTG+AGG + chr4_1:33353913-33353932 Msa0544560:intron 15.0%
!!! TTTTCTTTAGTAATTATTGA+GGG + chr4_1:33353914-33353933 Msa0544560:intron 15.0%
!!! TTTTAGAATTTAAAATGAAG+AGG + chr4_1:33353956-33353975 Msa0544560:intron 15.0%
!! TATTATCTTTAAGCAATTTA+TGG - chr4_1:33354041-33354060 None:intergenic 15.0%
!! TAATAAATTTCTTAAGGTTA+TGG + chr4_1:33354056-33354075 Msa0544560:intron 15.0%
!!! ATTATGAAAGTTTCTTTTAA+TGG + chr4_1:33354197-33354216 Msa0544560:intron 15.0%
!!! GATAGATTTTTGATTAAATA+TGG - chr4_1:33354483-33354502 None:intergenic 15.0%
!!! GTTTAACTGATTTAAATTAA+GGG - chr4_1:33354831-33354850 None:intergenic 15.0%
!!! AGTTTAACTGATTTAAATTA+AGG - chr4_1:33354832-33354851 None:intergenic 15.0%
!!! AAGTTTACTAAATTTTATTC+CGG + chr4_1:33355024-33355043 Msa0544560:intron 15.0%
!!! GTTATTAATTAGTAAGATTT+TGG - chr4_1:33355329-33355348 None:intergenic 15.0%
!!! TTATTTTGTTCTGTAAAAAA+AGG + chr4_1:33356159-33356178 Msa0544560:intron 15.0%
!! ATATCTATGAATGAAATAAA+AGG - chr4_1:33356220-33356239 None:intergenic 15.0%
!! TTCAGTCAAAAATTAATAAA+GGG - chr4_1:33356593-33356612 None:intergenic 15.0%
!! TTTCAGTCAAAAATTAATAA+AGG - chr4_1:33356594-33356613 None:intergenic 15.0%
!!! TTTTTCTTTTTCCTTTTTTA+TGG - chr4_1:33356869-33356888 None:intergenic 15.0%
!! AGAGAAAAATTAAAAAAAGT+TGG + chr4_1:33357225-33357244 Msa0544560:intron 15.0%
!! AAAATGAAAAAAAAACTTGA+TGG - chr4_1:33357627-33357646 None:intergenic 15.0%
!! GAATGATAAAAAAAACTTGA+TGG - chr4_1:33352304-33352323 None:intergenic 20.0%
!! GAGAAAATACTAGTATAATA+TGG + chr4_1:33352334-33352353 Msa0544560:intron 20.0%
!! ATTAAAGAAGGAAAAATTGA+AGG + chr4_1:33352885-33352904 Msa0544560:intron 20.0%
!! GATTGAGTTTACTAAAATAT+AGG + chr4_1:33353534-33353553 Msa0544560:intron 20.0%
!!! TACTTTGTAATTTTGAGTTT+TGG + chr4_1:33353661-33353680 Msa0544560:intron 20.0%
!! TTTCTTTAGTAATTATTGAG+GGG + chr4_1:33353915-33353934 Msa0544560:intron 20.0%
!!! ATTTTGTTGAGAAATTTCTT+TGG - chr4_1:33354011-33354030 None:intergenic 20.0%
!! ATTGTGTGATTTGATTATTT+AGG - chr4_1:33354117-33354136 None:intergenic 20.0%
!!! TTTTGGTTAGTAATTTCATT+CGG - chr4_1:33354435-33354454 None:intergenic 20.0%
!!! GTTATTAATTGCTAAGATTT+TGG - chr4_1:33354452-33354471 None:intergenic 20.0%
!!! ATTTTTATGATTTTATTCCC+AGG - chr4_1:33354983-33355002 None:intergenic 20.0%
!! AGTAAACTTGTAACAAATAT+AGG - chr4_1:33355013-33355032 None:intergenic 20.0%
!!! AGTTTACTAAATTTTATTCC+GGG + chr4_1:33355025-33355044 Msa0544560:intron 20.0%
!! GTTAACGTTATAATATTTCA+AGG - chr4_1:33355170-33355189 None:intergenic 20.0%
!!! AAGATAGAAATTTTATTCCA+AGG - chr4_1:33355214-33355233 None:intergenic 20.0%
!! ATTTCTATCTTTATATTCCA+AGG + chr4_1:33355223-33355242 Msa0544560:intron 20.0%
!!! GATAGAATTTTGGTTAAATA+TGG - chr4_1:33355360-33355379 None:intergenic 20.0%
!! TATTACAAAGAATTATTTGC+CGG - chr4_1:33355447-33355466 None:intergenic 20.0%
!! ATGGGAATAAAAAAAGTAAA+AGG - chr4_1:33355705-33355724 None:intergenic 20.0%
!!! TGGTTTTTTGTTTTTTTCTA+GGG + chr4_1:33356009-33356028 Msa0544560:intron 20.0%
!! GGAAAGAAAATATATTGTTT+AGG - chr4_1:33356199-33356218 None:intergenic 20.0%
!! ATTTCATTCATAGATATACA+AGG + chr4_1:33356223-33356242 Msa0544560:intron 20.0%
!! ATAGATATACAAGGTATATA+CGG + chr4_1:33356232-33356251 Msa0544560:intron 20.0%
!!! GATGTATTTATTTTTCTTCT+AGG + chr4_1:33356284-33356303 Msa0544560:intron 20.0%
!! TCAGTCAAAAATTAATAAAG+GGG - chr4_1:33356592-33356611 None:intergenic 20.0%
!!! TTATTTTAATTGCAAAGTCA+AGG + chr4_1:33356723-33356742 Msa0544560:intron 20.0%
!!! TATTTTAATTGCAAAGTCAA+GGG + chr4_1:33356724-33356743 Msa0544560:intron 20.0%
!!! GTTTTCTTTTTCCATAAAAA+AGG + chr4_1:33356855-33356874 Msa0544560:intron 20.0%
!!! TTTTGATAAAATAATTGGAG+TGG - chr4_1:33356991-33357010 None:intergenic 20.0%
!!! AATAAGACTACTTTTTTTAG+AGG - chr4_1:33357098-33357117 None:intergenic 20.0%
!! ATATTATATGGTAAACAAAC+TGG - chr4_1:33357260-33357279 None:intergenic 20.0%
!! GAGAAAATACTAGTATAATA+TGG + chr4_1:33352334-33352353 Msa0544560:intron 20.0%
!! AAAAACTTGATGGTAACATA+GGG - chr4_1:33352294-33352313 None:intergenic 25.0%
!! AAAAAACTTGATGGTAACAT+AGG - chr4_1:33352295-33352314 None:intergenic 25.0%
!! TTATACTAGTATTTTCTCTC+TGG - chr4_1:33352332-33352351 None:intergenic 25.0%
!!! AGTTTTGGTTTCAAAACAAA+AGG + chr4_1:33352502-33352521 Msa0544560:CDS 25.0%
!!! GTTTTGTTTTGTTGTGTTTT+TGG + chr4_1:33352572-33352591 Msa0544560:intron 25.0%
!!! TTTTGTTGTGTTTTTGGTAA+AGG + chr4_1:33352578-33352597 Msa0544560:intron 25.0%
! ATTACCATAAATAAGTCACA+AGG + chr4_1:33352754-33352773 Msa0544560:intron 25.0%
! TTACCATAAATAAGTCACAA+GGG + chr4_1:33352755-33352774 Msa0544560:intron 25.0%
! ACAAAAGTTCTCATTAAAGA+AGG + chr4_1:33352873-33352892 Msa0544560:intron 25.0%
!! AAATAGTTGACTTAACTACA+TGG + chr4_1:33353358-33353377 Msa0544560:intron 25.0%
! AATCATAACCATCAAACAAA+AGG - chr4_1:33353466-33353485 None:intergenic 25.0%
!!! TTTTGTTTGATGGTTATGAT+TGG + chr4_1:33353465-33353484 Msa0544560:intron 25.0%
!! TAAACTCTTTTTCCTCTATT+TGG + chr4_1:33353585-33353604 Msa0544560:intron 25.0%
! ATCGTAATAAAACCAAATAG+AGG - chr4_1:33353600-33353619 None:intergenic 25.0%
!!! TCTATTTGGTTTTATTACGA+TGG + chr4_1:33353599-33353618 Msa0544560:intron 25.0%
! GTTTCATCAAAAAACTTACT+TGG - chr4_1:33353630-33353649 None:intergenic 25.0%
! AGATAAAAAGACAAACCTTT+GGG - chr4_1:33353695-33353714 None:intergenic 25.0%
! AAGATAAAAAGACAAACCTT+TGG - chr4_1:33353696-33353715 None:intergenic 25.0%
!! TTCATAGTTCTGCAAAATAT+TGG + chr4_1:33353726-33353745 Msa0544560:intron 25.0%
! TTCTGCAAAATATTGGTAAA+GGG + chr4_1:33353733-33353752 Msa0544560:intron 25.0%
!! GATGAAGTGTTAACATAATT+GGG + chr4_1:33353756-33353775 Msa0544560:intron 25.0%
!! GTTTAACTGGTTTAAGTTAT+GGG - chr4_1:33354301-33354320 None:intergenic 25.0%
!! AGTTTAACTGGTTTAAGTTA+TGG - chr4_1:33354302-33354321 None:intergenic 25.0%
! TTTGGTTAGTAATTTCATTC+GGG - chr4_1:33354434-33354453 None:intergenic 25.0%
!!! TTTAATTTTCGGTTCAAGTT+CGG + chr4_1:33354593-33354612 Msa0544560:intron 25.0%
! TCTGATATAAATAGATGAAG+AGG + chr4_1:33354879-33354898 Msa0544560:intron 25.0%
! AAGTTATATTTGTAGATTCC+TGG + chr4_1:33354962-33354981 Msa0544560:intron 25.0%
! AGTTATATTTGTAGATTCCT+GGG + chr4_1:33354963-33354982 Msa0544560:intron 25.0%
!! AAAAGTTTTCCCAAAGAAAA+TGG + chr4_1:33355070-33355089 Msa0544560:intron 25.0%
!! TTATTCACACCATTTTCTTT+GGG - chr4_1:33355082-33355101 None:intergenic 25.0%
! TTCAAGGAACCTTAAAAATA+AGG - chr4_1:33355154-33355173 None:intergenic 25.0%
!!! CATCTTTTTTCTAAATACCT+TGG + chr4_1:33355194-33355213 Msa0544560:intron 25.0%
! GTTATTCTTAGGAATACATT+TGG + chr4_1:33355249-33355268 Msa0544560:intron 25.0%
! TTTGGTTAGTAATTTCATTC+TGG - chr4_1:33354434-33354453 None:intergenic 25.0%
! AATCAAGAAGGAATTGAATT+TGG + chr4_1:33355395-33355414 Msa0544560:intron 25.0%
! AAAAGGTTAGAAGAAAGAAA+CGG - chr4_1:33355688-33355707 None:intergenic 25.0%
! ACTCTTTAATCATTCATTTC+TGG + chr4_1:33355818-33355837 Msa0544560:intron 25.0%
!!! TTGTTTATATTTTTATGGGG+TGG + chr4_1:33355945-33355964 Msa0544560:intron 25.0%
! TGGAAAATAAACTTATCACA+AGG - chr4_1:33355988-33356007 None:intergenic 25.0%
! AGAAAAAAACAAAAAACCAC+TGG - chr4_1:33356008-33356027 None:intergenic 25.0%
!!! GTGGTTTTTTGTTTTTTTCT+AGG + chr4_1:33356008-33356027 Msa0544560:intron 25.0%
!!! TTTTTGTTTTTTTCTAGGGT+TGG + chr4_1:33356013-33356032 Msa0544560:intron 25.0%
! TAGAAAAAGACTTGAAGAAA+AGG - chr4_1:33356525-33356544 None:intergenic 25.0%
! GGATGAAAAATTGAAGAAAA+GGG - chr4_1:33356557-33356576 None:intergenic 25.0%
!! AATAAAGGGGAATTTAAGAT+GGG - chr4_1:33356579-33356598 None:intergenic 25.0%
! TAATAAAGGGGAATTTAAGA+TGG - chr4_1:33356580-33356599 None:intergenic 25.0%
! TTCTATTTATTGTTCCAATG+AGG + chr4_1:33356771-33356790 Msa0544560:intron 25.0%
! ATTTATTTACAAAGCTGGAT+GGG - chr4_1:33356910-33356929 None:intergenic 25.0%
! AATTTATTTACAAAGCTGGA+TGG - chr4_1:33356911-33356930 None:intergenic 25.0%
! CAGAAATTTATTTACAAAGC+TGG - chr4_1:33356915-33356934 None:intergenic 25.0%
! TAGTTTGAAAAACTACAACA+AGG + chr4_1:33357299-33357318 Msa0544560:intron 25.0%
!! AAAAACTTGATGGTAACATA+GGG - chr4_1:33352294-33352313 None:intergenic 25.0%
!! AAAAAACTTGATGGTAACAT+AGG - chr4_1:33352295-33352314 None:intergenic 25.0%
!!! AGTTTTGGTTTCAAAACAAA+AGG + chr4_1:33352502-33352521 Msa0544560:CDS 25.0%
!!! GTTTTGTTTTGTTGTGTTTT+TGG + chr4_1:33352572-33352591 Msa0544560:intron 25.0%
!!! TTTTGTTGTGTTTTTGGTAA+AGG + chr4_1:33352578-33352597 Msa0544560:intron 25.0%
ATTCTTACGATTCCATTTCT+TGG - chr4_1:33352265-33352284 None:intergenic 30.0%
! TATTTGTTGCAGTTTCTTCA+AGG + chr4_1:33352407-33352426 Msa0544560:intron 30.0%
AATAGCAAAACTTAGTCCAA+CGG - chr4_1:33352737-33352756 None:intergenic 30.0%
AAGCTACATATAATTGACCA+TGG - chr4_1:33352827-33352846 None:intergenic 30.0%
TATCCTTACTAGCAAAAAGA+CGG - chr4_1:33353163-33353182 None:intergenic 30.0%
!! TTGCTTCAATTTTTAGAGGA+GGG - chr4_1:33353224-33353243 None:intergenic 30.0%
!! TTTGCTTCAATTTTTAGAGG+AGG - chr4_1:33353225-33353244 None:intergenic 30.0%
!! GTGTTTGCTTCAATTTTTAG+AGG - chr4_1:33353228-33353247 None:intergenic 30.0%
! TCTGTTTGATTCAAGAGTTT+TGG - chr4_1:33353282-33353301 None:intergenic 30.0%
CAATATTTCTCACATCTACA+TGG + chr4_1:33353403-33353422 Msa0544560:intron 30.0%
ATAAAAAGACAAACCTTTGG+GGG - chr4_1:33353693-33353712 None:intergenic 30.0%
GATAAAAAGACAAACCTTTG+GGG - chr4_1:33353694-33353713 None:intergenic 30.0%
GTTCTGCAAAATATTGGTAA+AGG + chr4_1:33353732-33353751 Msa0544560:intron 30.0%
TCTGCAAAATATTGGTAAAG+GGG + chr4_1:33353734-33353753 Msa0544560:intron 30.0%
! GGATGAAGTGTTAACATAAT+TGG + chr4_1:33353755-33353774 Msa0544560:intron 30.0%
AAGATATCGTTTGAATGGAA+TGG - chr4_1:33353785-33353804 None:intergenic 30.0%
TTCCATTCAAACGATATCTT+TGG + chr4_1:33353785-33353804 Msa0544560:intron 30.0%
TCCATTCAAACGATATCTTT+GGG + chr4_1:33353786-33353805 Msa0544560:intron 30.0%
TCAGCTACATAACATATGTT+GGG - chr4_1:33354333-33354352 None:intergenic 30.0%
ATCAGCTACATAACATATGT+TGG - chr4_1:33354334-33354353 None:intergenic 30.0%
AAAATCTATCAAATCACACG+CGG + chr4_1:33354493-33354512 Msa0544560:intron 30.0%
AAACTTTAGTCGAGTTAACT+CGG + chr4_1:33354667-33354686 Msa0544560:intron 30.0%
ATGCAACAATGAATAGACAT+GGG + chr4_1:33354927-33354946 Msa0544560:intron 30.0%
! CTTATTCACACCATTTTCTT+TGG - chr4_1:33355083-33355102 None:intergenic 30.0%
CAAAGAAAATGGTGTGAATA+AGG + chr4_1:33355081-33355100 Msa0544560:intron 30.0%
TTCCAAGGAATGTTATTCTT+AGG + chr4_1:33355238-33355257 Msa0544560:intron 30.0%
TTCCTAAGAATAACATTCCT+TGG - chr4_1:33355243-33355262 None:intergenic 30.0%
CTTAGGAATACATTTGGTAT+AGG + chr4_1:33355255-33355274 Msa0544560:intron 30.0%
! CGTGTGATTTGATAGAATTT+TGG - chr4_1:33355370-33355389 None:intergenic 30.0%
!!! GGTTTTGAGAAGGTTAATAT+GGG - chr4_1:33355723-33355742 None:intergenic 30.0%
!!! TGGTTTTGAGAAGGTTAATA+TGG - chr4_1:33355724-33355743 None:intergenic 30.0%
ATATTAACCTTCTCAAAACC+AGG + chr4_1:33355723-33355742 Msa0544560:intron 30.0%
!! GTGATAAGTTTATTTTCCAG+TGG + chr4_1:33355989-33356008 Msa0544560:intron 30.0%
TGAATGTGAAAGAAAACGTT+AGG + chr4_1:33356037-33356056 Msa0544560:intron 30.0%
TTTGATTCTAACTCTTTGAC+AGG + chr4_1:33356466-33356485 Msa0544560:intron 30.0%
GGGATGAAAAATTGAAGAAA+AGG - chr4_1:33356558-33356577 None:intergenic 30.0%
! ATAAAGGGGAATTTAAGATG+GGG - chr4_1:33356578-33356597 None:intergenic 30.0%
! TCTAATCTCATTTTCTCTCT+GGG + chr4_1:33356672-33356691 Msa0544560:intron 30.0%
AGAAGGATATTAAACCTCAT+TGG - chr4_1:33356788-33356807 None:intergenic 30.0%
TTTAGAGGAATTACAGTACT+TGG - chr4_1:33357083-33357102 None:intergenic 30.0%
ATTCTTACGATTCCATTTCT+TGG - chr4_1:33352265-33352284 None:intergenic 30.0%
! TATTTGTTGCAGTTTCTTCA+AGG + chr4_1:33352407-33352426 Msa0544560:intron 30.0%
CATTTGATGAACATCATTTG+AGG + chr4_1:33358088-33358107 Msa0544560:CDS 30.0%
TTTGCATCATCTCTAATGGA+TGG - chr4_1:33352082-33352101 None:intergenic 35.0%
! GTGTTTTGCATCATCTCTAA+TGG - chr4_1:33352086-33352105 None:intergenic 35.0%
!! CGGTGATAACGTTTTCTTTT+GGG - chr4_1:33352224-33352243 None:intergenic 35.0%
!! AACCAAAACTTGACTTGCAA+AGG - chr4_1:33352492-33352511 None:intergenic 35.0%
AAACAAAAGGACTCAGATGA+AGG + chr4_1:33352515-33352534 Msa0544560:CDS 35.0%
!!! TGTGTTTTTGGTAAAGGAGT+TGG + chr4_1:33352584-33352603 Msa0544560:intron 35.0%
AGCTGATAACATGAGGTATA+GGG + chr4_1:33352671-33352690 Msa0544560:intron 35.0%
! CTGTTTTCTTCTAAGCACAA+GGG - chr4_1:33352710-33352729 None:intergenic 35.0%
! ACTGTTTTCTTCTAAGCACA+AGG - chr4_1:33352711-33352730 None:intergenic 35.0%
! AGAAGAAAACAGTTTTCCGT+TGG + chr4_1:33352718-33352737 Msa0544560:intron 35.0%
TATCCTTACTAGCGAAAAGA+CGG - chr4_1:33353093-33353112 None:intergenic 35.0%
ATCCTTACTAGCAAAAAGAC+GGG - chr4_1:33353162-33353181 None:intergenic 35.0%
!! TGCTTCAATTTTTAGAGGAG+GGG - chr4_1:33353223-33353242 None:intergenic 35.0%
!!! TTGATTCAAGAGTTTTGGAG+TGG - chr4_1:33353277-33353296 None:intergenic 35.0%
GAATCAAACAGACCATTAGT+TGG + chr4_1:33353290-33353309 Msa0544560:intron 35.0%
AGACCATTAGTTGGTTACTT+TGG + chr4_1:33353299-33353318 Msa0544560:intron 35.0%
AAGCCAAAGTAACCAACTAA+TGG - chr4_1:33353305-33353324 None:intergenic 35.0%
!! GCTTTTAAGTCGCATTCTAT+AGG + chr4_1:33353321-33353340 Msa0544560:intron 35.0%
! TGTTTGATGGTTATGATTGG+AGG + chr4_1:33353468-33353487 Msa0544560:intron 35.0%
! GTTTGATGGTTATGATTGGA+GGG + chr4_1:33353469-33353488 Msa0544560:intron 35.0%
! TTTGAGTTCTAACTGAAACG+TGG - chr4_1:33354262-33354281 None:intergenic 35.0%
CTGATCTAAAAGAGATGAAG+CGG + chr4_1:33354349-33354368 Msa0544560:intron 35.0%
! TATACATAGTTCGACTCGAT+TGG - chr4_1:33354544-33354563 None:intergenic 35.0%
GATAATTAGCTCGTTGAACT+TGG - chr4_1:33354636-33354655 None:intergenic 35.0%
GAGTTAACTCGACTAAAGTT+TGG - chr4_1:33354668-33354687 None:intergenic 35.0%
AAACTATCCATTGTCGAACA+TGG + chr4_1:33354847-33354866 Msa0544560:intron 35.0%
TACATAACCATGTTCGACAA+TGG - chr4_1:33354857-33354876 None:intergenic 35.0%
CATGCAACAATGAATAGACA+TGG + chr4_1:33354926-33354945 Msa0544560:intron 35.0%
AATAAGGTTCTCATGGAGAT+GGG + chr4_1:33355097-33355116 Msa0544560:intron 35.0%
CATTCTGGATAGATGTCTAT+GGG - chr4_1:33355296-33355315 None:intergenic 35.0%
TCATTCTGGATAGATGTCTA+TGG - chr4_1:33355297-33355316 None:intergenic 35.0%
! TGATTTTGTGCAACCAATGA+CGG - chr4_1:33355424-33355443 None:intergenic 35.0%
! AATTGAAGAGCGTATTGAGA+GGG - chr4_1:33355574-33355593 None:intergenic 35.0%
! TAATTGAAGAGCGTATTGAG+AGG - chr4_1:33355575-33355594 None:intergenic 35.0%
! TTTGCAAAATGAGACTAGCT+AGG + chr4_1:33355903-33355922 Msa0544560:intron 35.0%
! TTGCAAAATGAGACTAGCTA+GGG + chr4_1:33355904-33355923 Msa0544560:intron 35.0%
GCTTAATCCTGAACTGAAAA+AGG + chr4_1:33356345-33356364 Msa0544560:intron 35.0%
TTCTTGCTTATATCCTGCAA+GGG - chr4_1:33356377-33356396 None:intergenic 35.0%
TTTCTTGCTTATATCCTGCA+AGG - chr4_1:33356378-33356397 None:intergenic 35.0%
ATTCTAACTCTTTGACAGGT+TGG + chr4_1:33356470-33356489 Msa0544560:intron 35.0%
GAGAAAATGAGATTAGAGAG+TGG - chr4_1:33356669-33356688 None:intergenic 35.0%
! CTCTAATCTCATTTTCTCTC+TGG + chr4_1:33356671-33356690 Msa0544560:intron 35.0%
!! GTGTATTTAGAGTATCGAGA+AGG - chr4_1:33356805-33356824 None:intergenic 35.0%
TGAAAAACTACAACAAGGCT+TGG + chr4_1:33357304-33357323 Msa0544560:intron 35.0%
GAAAAACTACAACAAGGCTT+GGG + chr4_1:33357305-33357324 Msa0544560:intron 35.0%
AATGTTTCAGTCAAACCTCT+TGG + chr4_1:33357366-33357385 Msa0544560:intron 35.0%
TTTGCATCATCTCTAATGGA+TGG - chr4_1:33352082-33352101 None:intergenic 35.0%
! GTGTTTTGCATCATCTCTAA+TGG - chr4_1:33352086-33352105 None:intergenic 35.0%
!! CGGTGATAACGTTTTCTTTT+GGG - chr4_1:33352224-33352243 None:intergenic 35.0%
!! AACCAAAACTTGACTTGCAA+AGG - chr4_1:33352492-33352511 None:intergenic 35.0%
AAACAAAAGGACTCAGATGA+AGG + chr4_1:33352515-33352534 Msa0544560:CDS 35.0%
!!! TGTGTTTTTGGTAAAGGAGT+TGG + chr4_1:33352584-33352603 Msa0544560:intron 35.0%
AGCTGATAACATGAGGTATA+GGG + chr4_1:33352671-33352690 Msa0544560:intron 35.0%
AATGCTTCATGTCCTAATTG+TGG + chr4_1:33358039-33358058 Msa0544560:CDS 35.0%
! ATTTGAGGCTTGAAAATGCA+AGG + chr4_1:33358103-33358122 Msa0544560:CDS 35.0%
! ATGGTTTTCACTGCAGGATT+TGG - chr4_1:33352162-33352181 None:intergenic 40.0%
!!! TAACGTTTTCTTTTGGGACG+TGG - chr4_1:33352218-33352237 None:intergenic 40.0%
!! GCGGTGATAACGTTTTCTTT+TGG - chr4_1:33352225-33352244 None:intergenic 40.0%
ACGATTCCATTTCTTGGATC+TGG - chr4_1:33352259-33352278 None:intergenic 40.0%
AAGGAGTTAAGCAGAGAGTT+AGG + chr4_1:33352459-33352478 Msa0544560:CDS 40.0%
AGGAGTTAAGCAGAGAGTTA+GGG + chr4_1:33352460-33352479 Msa0544560:CDS 40.0%
! AGCCTTTGCAAGTCAAGTTT+TGG + chr4_1:33352487-33352506 Msa0544560:CDS 40.0%
AGCTTAGAGCTGATAACATG+AGG + chr4_1:33352664-33352683 Msa0544560:intron 40.0%
GAGCTGATAACATGAGGTAT+AGG + chr4_1:33352670-33352689 Msa0544560:intron 40.0%
CTGCCCTTGTGACTTATTTA+TGG - chr4_1:33352761-33352780 None:intergenic 40.0%
GAAAGATAGATTCCGGCATT+GGG - chr4_1:33352790-33352809 None:intergenic 40.0%
TGAAAGATAGATTCCGGCAT+TGG - chr4_1:33352791-33352810 None:intergenic 40.0%
ATGCCGGAATCTATCTTTCA+CGG + chr4_1:33352791-33352810 Msa0544560:intron 40.0%
ATGCCGTGAAAGATAGATTC+CGG - chr4_1:33352797-33352816 None:intergenic 40.0%
ATCCTTACTAGCGAAAAGAC+GGG - chr4_1:33353092-33353111 None:intergenic 40.0%
!! CTTCAATTTTTAGAGGAGGG+GGG - chr4_1:33353221-33353240 None:intergenic 40.0%
!! GCTTCAATTTTTAGAGGAGG+GGG - chr4_1:33353222-33353241 None:intergenic 40.0%
!!! TTCAAGAGTTTTGGAGTGGA+GGG - chr4_1:33353273-33353292 None:intergenic 40.0%
!!! ATTCAAGAGTTTTGGAGTGG+AGG - chr4_1:33353274-33353293 None:intergenic 40.0%
! GTTGATATGCTTGCTAGTCT+TGG + chr4_1:33353440-33353459 Msa0544560:intron 40.0%
!! AGTCTTGGCCTTTTGTTTGA+TGG + chr4_1:33353455-33353474 Msa0544560:intron 40.0%
GCCCAAAGATATCGTTTGAA+TGG - chr4_1:33353790-33353809 None:intergenic 40.0%
GTTATGGGTAAAGAAGTCAG+AGG - chr4_1:33354286-33354305 None:intergenic 40.0%
ACATAACATATGTTGGGCGA+TGG - chr4_1:33354327-33354346 None:intergenic 40.0%
TTCCGGGTATAAAATGTTCC+TGG + chr4_1:33355041-33355060 Msa0544560:intron 40.0%
TCCGGGTATAAAATGTTCCT+GGG + chr4_1:33355042-33355061 Msa0544560:intron 40.0%
! TCCCAGGAACATTTTATACC+CGG - chr4_1:33355046-33355065 None:intergenic 40.0%
! GGGAAAACTTTTCTATTCCC+AGG - chr4_1:33355062-33355081 None:intergenic 40.0%
TGGTGTGAATAAGGTTCTCA+TGG + chr4_1:33355090-33355109 Msa0544560:intron 40.0%
GAATAAGGTTCTCATGGAGA+TGG + chr4_1:33355096-33355115 Msa0544560:intron 40.0%
TGTCTATGGGTGTGTTTGTT+TGG - chr4_1:33355283-33355302 None:intergenic 40.0%
! TTGAATTTGGTAGCCGTCAT+TGG + chr4_1:33355408-33355427 Msa0544560:intron 40.0%
! CATTGGTTGCACAAAATCAC+CGG + chr4_1:33355425-33355444 Msa0544560:intron 40.0%
! AATGCATTGCTTGCTACTCA+GGG - chr4_1:33355526-33355545 None:intergenic 40.0%
! AAATGCATTGCTTGCTACTC+AGG - chr4_1:33355527-33355546 None:intergenic 40.0%
GGTGCAATTGCATTAAATGG+AGG - chr4_1:33355553-33355572 None:intergenic 40.0%
! GAGGGTGCAATTGCATTAAA+TGG - chr4_1:33355556-33355575 None:intergenic 40.0%
GGAACAGATAGAGGAAGAAA+GGG - chr4_1:33355606-33355625 None:intergenic 40.0%
AAGGAAGAAAGAGAGAGAGT+GGG - chr4_1:33355628-33355647 None:intergenic 40.0%
TGAGAAAAGAAGAGAGATCC+TGG - chr4_1:33355744-33355763 None:intergenic 40.0%
!!! GTTTGCTCCTTTTTCAGTTC+AGG - chr4_1:33356355-33356374 None:intergenic 40.0%
GTGAGAAATAGTAGCAACGT+TGG + chr4_1:33356422-33356441 Msa0544560:intron 40.0%
!! TAACTCTTTGACAGGTTGGT+AGG + chr4_1:33356474-33356493 Msa0544560:intron 40.0%
! ATGGTTTTCACTGCAGGATT+TGG - chr4_1:33352162-33352181 None:intergenic 40.0%
!!! TAACGTTTTCTTTTGGGACG+TGG - chr4_1:33352218-33352237 None:intergenic 40.0%
!! GCGGTGATAACGTTTTCTTT+TGG - chr4_1:33352225-33352244 None:intergenic 40.0%
ACGATTCCATTTCTTGGATC+TGG - chr4_1:33352259-33352278 None:intergenic 40.0%
AAGGAGTTAAGCAGAGAGTT+AGG + chr4_1:33352459-33352478 Msa0544560:CDS 40.0%
AGGAGTTAAGCAGAGAGTTA+GGG + chr4_1:33352460-33352479 Msa0544560:CDS 40.0%
! AGCCTTTGCAAGTCAAGTTT+TGG + chr4_1:33352487-33352506 Msa0544560:CDS 40.0%
AGCTTAGAGCTGATAACATG+AGG + chr4_1:33352664-33352683 Msa0544560:intron 40.0%
GAGCTGATAACATGAGGTAT+AGG + chr4_1:33352670-33352689 Msa0544560:intron 40.0%
GACATTTCACCTATAGCTGT+TGG - chr4_1:33358069-33358088 None:intergenic 40.0%
AAATGCAAGGCTAAGAGAAG+AGG + chr4_1:33358116-33358135 Msa0544560:CDS 40.0%
! TTTCGAAGCACTCGTCTTCT+CGG - chr4_1:33352133-33352152 None:intergenic 45.0%
TCCTGCAGTGAAAACCATGA+AGG + chr4_1:33352164-33352183 Msa0544560:CDS 45.0%
! ACCTTCATGGTTTTCACTGC+AGG - chr4_1:33352168-33352187 None:intergenic 45.0%
TGCAGTGAAAACCATGAAGG+TGG + chr4_1:33352167-33352186 Msa0544560:CDS 45.0%
TCAGCACCAGATCCAAGAAA+TGG + chr4_1:33352250-33352269 Msa0544560:CDS 45.0%
CCTTCCTTTGCTTGTCATCT+GGG - chr4_1:33352443-33352462 None:intergenic 45.0%
TCCTTCCTTTGCTTGTCATC+TGG - chr4_1:33352444-33352463 None:intergenic 45.0%
GCAGACACAACATGAACGTT+CGG + chr4_1:33352617-33352636 Msa0544560:intron 45.0%
! ATAGATTCCGGCATTGGGAA+TGG - chr4_1:33352785-33352804 None:intergenic 45.0%
!! TTCACGGCATGTTTTTGCCA+TGG + chr4_1:33352807-33352826 Msa0544560:intron 45.0%
! TGCCCGTCTTTTTGCTAGTA+AGG + chr4_1:33353157-33353176 Msa0544560:intron 45.0%
!! AATTTTTAGAGGAGGGGGGA+GGG - chr4_1:33353217-33353236 None:intergenic 45.0%
!!! TCAAGAGTTTTGGAGTGGAG+GGG - chr4_1:33353272-33353291 None:intergenic 45.0%
!!! GTTTTGGTTTAGTCCCCCAA+AGG + chr4_1:33353677-33353696 Msa0544560:intron 45.0%
TGGGCGATGGATAGTTTAAC+TGG - chr4_1:33354314-33354333 None:intergenic 45.0%
GTTAAGCACGACGCTCTATA+GGG - chr4_1:33354704-33354723 None:intergenic 45.0%
TGTTAAGCACGACGCTCTAT+AGG - chr4_1:33354705-33354724 None:intergenic 45.0%
TCACACGCGCAAAATCAAGA+AGG + chr4_1:33355383-33355402 Msa0544560:intron 45.0%
! ATGCATTGCTTGCTACTCAG+GGG - chr4_1:33355525-33355544 None:intergenic 45.0%
GATAGAGGAAGAAAGGGAAG+AGG - chr4_1:33355600-33355619 None:intergenic 45.0%
GGGAACAGATAGAGGAAGAA+AGG - chr4_1:33355607-33355626 None:intergenic 45.0%
AGGAAGAAAGAGAGAGAGTG+GGG - chr4_1:33355627-33355646 None:intergenic 45.0%
GAAGGAAGAAAGAGAGAGAG+TGG - chr4_1:33355629-33355648 None:intergenic 45.0%
!! AGAGAGAGAGAGAGCATTGA+AGG - chr4_1:33355647-33355666 None:intergenic 45.0%
!!! GAGAGATCCTGGTTTTGAGA+AGG - chr4_1:33355733-33355752 None:intergenic 45.0%
AAAAAGGAGCAAACCCTTGC+AGG + chr4_1:33356361-33356380 Msa0544560:intron 45.0%
! TTTCGAAGCACTCGTCTTCT+CGG - chr4_1:33352133-33352152 None:intergenic 45.0%
TCCTGCAGTGAAAACCATGA+AGG + chr4_1:33352164-33352183 Msa0544560:CDS 45.0%
! ACCTTCATGGTTTTCACTGC+AGG - chr4_1:33352168-33352187 None:intergenic 45.0%
TGCAGTGAAAACCATGAAGG+TGG + chr4_1:33352167-33352186 Msa0544560:CDS 45.0%
TCAGCACCAGATCCAAGAAA+TGG + chr4_1:33352250-33352269 Msa0544560:CDS 45.0%
CCTTCCTTTGCTTGTCATCT+GGG - chr4_1:33352443-33352462 None:intergenic 45.0%
TCCTTCCTTTGCTTGTCATC+TGG - chr4_1:33352444-33352463 None:intergenic 45.0%
GCAGACACAACATGAACGTT+CGG + chr4_1:33352617-33352636 Msa0544560:intron 45.0%
GCTTCATGTCCTAATTGTGG+TGG + chr4_1:33358042-33358061 Msa0544560:CDS 45.0%
!!! TATTTAAGAAATTTAATTTT+CGG + chr4_1:33354582-33354601 Msa0544560:intron 5.0%
!! AAATGAAAATAAAATAAAAA+TGG + chr4_1:33355482-33355501 Msa0544560:intron 5.0%
!!! TAAATTTGTTTATATTTTTA+TGG + chr4_1:33355940-33355959 Msa0544560:intron 5.0%
!!! AAATTTGTTTATATTTTTAT+GGG + chr4_1:33355941-33355960 Msa0544560:intron 5.0%
!!! AACTTTTTATAATTATTATT+TGG - chr4_1:33357147-33357166 None:intergenic 5.0%
CAGTCAAACCTCTTGGAAGC+TGG + chr4_1:33352050-33352069 Msa0544560:CDS 50.0%
ACTCGTCTTCTCGGATTCGA+GGG - chr4_1:33352124-33352143 None:intergenic 50.0%
GAAGACGAGTGCTTCGAAAG+TGG + chr4_1:33352134-33352153 Msa0544560:CDS 50.0%
GCTGCTTCTGGTGAAGAACA+AGG + chr4_1:33352191-33352210 Msa0544560:CDS 50.0%
CTTTGCTTGTCATCTGGGTG+TGG - chr4_1:33352438-33352457 None:intergenic 50.0%
CACACCCAGATGACAAGCAA+AGG + chr4_1:33352436-33352455 Msa0544560:CDS 50.0%
CCCAGATGACAAGCAAAGGA+AGG + chr4_1:33352440-33352459 Msa0544560:CDS 50.0%
CATGAGGTATAGGGAAGCTC+AGG + chr4_1:33352680-33352699 Msa0544560:intron 50.0%
! TGCCCGTCTTTTCGCTAGTA+AGG + chr4_1:33353087-33353106 Msa0544560:intron 50.0%
TAGCAAAAAGACGGGCACGA+GGG - chr4_1:33353154-33353173 None:intergenic 50.0%
!! ATTTTTAGAGGAGGGGGGAG+GGG - chr4_1:33353216-33353235 None:intergenic 50.0%
!! CAATTTTTAGAGGAGGGGGG+AGG - chr4_1:33353218-33353237 None:intergenic 50.0%
CAAGCACGACGCTGTAAGAA+TGG - chr4_1:33354168-33354187 None:intergenic 50.0%
! CGGTTCAAGTTCGGCTCATT+AGG + chr4_1:33354602-33354621 Msa0544560:intron 50.0%
AGAGAGTGGGGAACAGATAG+AGG - chr4_1:33355615-33355634 None:intergenic 50.0%
CAGTCAAACCTCTTGGAAGC+TGG + chr4_1:33352050-33352069 Msa0544560:CDS 50.0%
ACTCGTCTTCTCGGATTCGA+GGG - chr4_1:33352124-33352143 None:intergenic 50.0%
GAAGACGAGTGCTTCGAAAG+TGG + chr4_1:33352134-33352153 Msa0544560:CDS 50.0%
GCTGCTTCTGGTGAAGAACA+AGG + chr4_1:33352191-33352210 Msa0544560:CDS 50.0%
CTTTGCTTGTCATCTGGGTG+TGG - chr4_1:33352438-33352457 None:intergenic 50.0%
CACACCCAGATGACAAGCAA+AGG + chr4_1:33352436-33352455 Msa0544560:CDS 50.0%
CCCAGATGACAAGCAAAGGA+AGG + chr4_1:33352440-33352459 Msa0544560:CDS 50.0%
GCTGTTGGACCACCACAATT+AGG - chr4_1:33358054-33358073 None:intergenic 50.0%
TGTGGTGGTCCAACAGCTAT+AGG + chr4_1:33358057-33358076 Msa0544560:CDS 50.0%
GGAACTGACCAGCTTCCAAG+AGG - chr4_1:33352061-33352080 None:intergenic 55.0%
CACTCGTCTTCTCGGATTCG+AGG - chr4_1:33352125-33352144 None:intergenic 55.0%
CAGAAGCAGCACCACCTTCA+TGG - chr4_1:33352181-33352200 None:intergenic 55.0%
!! CATGAAGGTGGTGCTGCTTC+TGG + chr4_1:33352179-33352198 Msa0544560:CDS 55.0%
! CTTGGATCTGGTGCTGAGTG+TGG - chr4_1:33352247-33352266 None:intergenic 55.0%
AGCAAAAAGACGGGCACGAG+GGG - chr4_1:33353153-33353172 None:intergenic 55.0%
CTAGCAAAAAGACGGGCACG+AGG - chr4_1:33353155-33353174 None:intergenic 55.0%
!!! GAGTTTTGGAGTGGAGGGGA+GGG - chr4_1:33353268-33353287 None:intergenic 55.0%
!!! AGAGTTTTGGAGTGGAGGGG+AGG - chr4_1:33353269-33353288 None:intergenic 55.0%
AGCACGACGCTCTATAGGGT+TGG - chr4_1:33354700-33354719 None:intergenic 55.0%
GGAACTGACCAGCTTCCAAG+AGG - chr4_1:33352061-33352080 None:intergenic 55.0%
CACTCGTCTTCTCGGATTCG+AGG - chr4_1:33352125-33352144 None:intergenic 55.0%
CAGAAGCAGCACCACCTTCA+TGG - chr4_1:33352181-33352200 None:intergenic 55.0%
!! CATGAAGGTGGTGCTGCTTC+TGG + chr4_1:33352179-33352198 Msa0544560:CDS 55.0%
! CTTGGATCTGGTGCTGAGTG+TGG - chr4_1:33352247-33352266 None:intergenic 55.0%
! GGATCTGGTGCTGAGTGTGG+CGG - chr4_1:33352244-33352263 None:intergenic 60.0%
GGGCAGACCATTCCCAATGC+CGG + chr4_1:33352775-33352794 Msa0544560:intron 60.0%
CAAAAAGACGGGCACGAGGG+GGG - chr4_1:33353151-33353170 None:intergenic 60.0%
GCAAAAAGACGGGCACGAGG+GGG - chr4_1:33353152-33353171 None:intergenic 60.0%
! GGATCTGGTGCTGAGTGTGG+CGG - chr4_1:33352244-33352263 None:intergenic 60.0%
AAGACGGGCACGAGGGGGGA+GGG - chr4_1:33353147-33353166 None:intergenic 70.0%
AAAGACGGGCACGAGGGGGG+AGG - chr4_1:33353148-33353167 None:intergenic 70.0%
AGACGGGCACGAGGGGGGAG+GGG - chr4_1:33353146-33353165 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33352044 33358146 33352044 ID=Msa0544560;Name=Msa0544560
chr4_1 mRNA 33352044 33358146 33352044 ID=Msa0544560-mRNA-1;Parent=Msa0544560;Name=Msa0544560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.4|1|0.75|0.8|5|0|296
chr4_1 exon 33352044 33352276 33352044 ID=Msa0544560-mRNA-1:exon:8515;Parent=Msa0544560-mRNA-1
chr4_1 exon 33352419 33352536 33352419 ID=Msa0544560-mRNA-1:exon:8516;Parent=Msa0544560-mRNA-1
chr4_1 exon 33357376 33357599 33357376 ID=Msa0544560-mRNA-1:exon:8517;Parent=Msa0544560-mRNA-1
chr4_1 exon 33357745 33357862 33357745 ID=Msa0544560-mRNA-1:exon:8518;Parent=Msa0544560-mRNA-1
chr4_1 exon 33357949 33358146 33357949 ID=Msa0544560-mRNA-1:exon:8519;Parent=Msa0544560-mRNA-1
chr4_1 CDS 33352044 33352276 33352044 ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1
chr4_1 CDS 33352419 33352536 33352419 ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1
chr4_1 CDS 33357376 33357599 33357376 ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1
chr4_1 CDS 33357745 33357862 33357745 ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1
chr4_1 CDS 33357949 33358146 33357949 ID=Msa0544560-mRNA-1:cds;Parent=Msa0544560-mRNA-1
Gene Sequence

>Msa0544560

ATGTTTCAGTCAAACCTCTTGGAAGCTGGTCAGTTCCATCCATTAGAGATGATGCAAAACACTTCTGAAAGCGATGTCCCTCGAATCCGAGAAGACGAGTGCTTCGAAAGTGGCACCAAATCCTGCAGTGAAAACCATGAAGGTGGTGCTGCTTCTGGTGAAGAACAAGGACCACGTCCCAAAAGAAAACGTTATCACCGCCACACTCAGCACCAGATCCAAGAAATGGAATCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGTTAAGCAGAGAGTTAGGGCTAGAGCCTTTGCAAGTCAAGTTTTGGTTTCAAAACAAAAGGACTCAGATGAAGTCAAACCTCTTGGAAGCTGGTCAGTTCCATCCATTAGAGATGATGCAAAACACTTCTGAAAGCGATGTCCCTCGAATCCGAGAAGACGAGTGCTTCGAAAGTGGCACCAAATCCTGCAGTGAAAACCATGAAGGTGGTGCTGCTTCTGGTGAAGAACAAGGACCACGTCCCAAAAGAAAACGTTATCACCGCCACACTCAGCACCAGATCCAAGAAATGGAATCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGTTAAGCAGAGAGTTAGGGCTAGAGCCTTTGCAAGTCAAGTTTTGGTTTCAAAACAAAAGGACTCAGATGAAGACACAACATGAACGTTCGGAGAATTCTCAACTAAGAGCTGAAAATGAAAAGCTTAGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGTCCAACAGCTATAGGTGAAATGTCATTTGATGAACATCATTTGAGGCTTGAAAATGCAAGGCTAAGAGAAGAGGTACTTTAG

Protein sequence

>Msa0544560

MFQSNLLEAGQFHPLEMMQNTSESDVPRIREDECFESGTKSCSENHEGGAASGEEQGPRPKRKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKSNLLEAGQFHPLEMMQNTSESDVPRIREDECFESGTKSCSENHEGGAASGEEQGPRPKRKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEVL*