AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544570 MtrunA17_Chr4g0009901 69.708 274 32 2 1 223 1 274 5.39e-131 370
Msa0544570 MtrunA17_Chr4g0009851 57.676 241 50 3 1 189 1 241 4.90e-85 254
Msa0544570 MtrunA17_Chr4g0009981 73.510 151 39 1 40 189 38 188 9.55e-72 219
Msa0544570 MtrunA17_Chr4g0009991 81.197 117 20 2 51 166 1 116 3.58e-60 185
Msa0544570 MtrunA17_Chr4g0011071 73.529 102 26 1 40 140 70 171 9.13e-49 157
Msa0544570 MtrunA17_Chr1g0161431 35.600 250 73 5 10 174 11 257 9.15e-38 138
Msa0544570 MtrunA17_Chr5g0423031 42.180 211 71 5 1 211 1 160 4.90e-35 122
Msa0544570 MtrunA17_Chr4g0067981 31.727 249 93 4 10 181 31 279 4.34e-30 117
Msa0544570 MtrunA17_Chr8g0376881 33.333 243 85 6 9 174 24 266 2.77e-29 114
Msa0544570 MtrunA17_Chr6g0471041 40.113 177 97 4 16 185 66 240 8.24e-29 111
Msa0544570 MtrunA17_Chr2g0294911 32.510 243 83 5 10 174 29 268 1.42e-27 109
Msa0544570 MtrunA17_Chr3g0123131 32.377 244 86 6 10 174 13 256 1.52e-27 109
Msa0544570 MtrunA17_Chr1g0149841 31.128 257 95 7 7 181 2 258 2.34e-24 100
Msa0544570 MtrunA17_Chr7g0275401 37.736 159 64 4 50 176 96 251 2.50e-24 97.8
Msa0544570 MtrunA17_Chr3g0137101 31.474 251 83 8 10 174 8 255 3.54e-23 97.1
Msa0544570 MtrunA17_Chr4g0010001 78.723 47 10 0 1 47 1 47 4.07e-21 84.0
Msa0544570 MtrunA17_Chr4g0074411 29.150 247 99 6 10 180 18 264 4.46e-21 91.3
Msa0544570 MtrunA17_Chr4g0074421 36.184 152 74 4 38 166 31 182 5.36e-21 86.7
Msa0544570 MtrunA17_Chr2g0304841 27.559 254 96 6 10 175 18 271 1.17e-20 90.1
Msa0544570 MtrunA17_Chr4g0074401 35.220 159 75 4 50 180 108 266 1.42e-20 89.7
Msa0544570 MtrunA17_Chr8g0391911 29.555 247 97 5 10 179 9 255 6.16e-20 85.1
Msa0544570 MtrunA17_Chr7g0275891 27.027 259 97 5 7 173 2 260 7.34e-20 86.7
Msa0544570 MtrunA17_Chr1g0149831 37.423 163 68 5 50 181 33 192 1.11e-19 84.0
Msa0544570 MtrunA17_Chr1g0149851 27.547 265 98 6 7 177 2 266 5.31e-19 85.1
Msa0544570 MtrunA17_Chr6g0473731 35.484 155 83 3 40 182 11 160 6.58e-19 84.3
Msa0544570 MtrunA17_Chr5g0417521 51.429 70 33 1 117 185 15 84 9.34e-18 80.5
Msa0544570 MtrunA17_Chr6g0461641 63.636 55 19 1 117 170 42 96 2.70e-17 79.7
Msa0544570 MtrunA17_Chr2g0321461 60.000 55 21 1 117 170 45 99 4.27e-16 76.3
Msa0544570 MtrunA17_Chr7g0261911 48.052 77 39 1 110 185 255 331 4.42e-15 73.6
Msa0544570 MtrunA17_Chr7g0255711 55.932 59 26 0 116 174 90 148 8.14e-15 72.0
Msa0544570 MtrunA17_Chr4g0031961 54.237 59 27 0 116 174 130 188 8.79e-15 72.0
Msa0544570 MtrunA17_Chr2g0324891 45.055 91 48 2 85 173 127 217 1.46e-14 72.0
Msa0544570 MtrunA17_Chr4g0042451 56.364 55 23 1 117 170 17 71 2.19e-14 70.9
Msa0544570 MtrunA17_Chr7g0274471 50.000 70 34 1 117 185 218 287 4.09e-14 70.5
Msa0544570 MtrunA17_Chr1g0190301 56.897 58 24 1 113 169 171 228 5.86e-14 70.1
Msa0544570 MtrunA17_Chr3g0134461 25.714 210 78 4 10 166 8 192 8.45e-14 67.4
Msa0544570 MtrunA17_Chr2g0283951 36.667 120 66 4 102 215 69 184 1.03e-13 69.3
Msa0544570 MtrunA17_Chr7g0254981 46.835 79 39 2 117 192 50 128 1.08e-13 68.6
Msa0544570 MtrunA17_Chr1g0198601 47.500 80 34 2 98 176 199 271 1.16e-13 68.9
Msa0544570 MtrunA17_Chr4g0040481 55.172 58 26 0 116 173 157 214 1.27e-13 69.3
Msa0544570 MtrunA17_Chr4g0054981 55.357 56 25 0 116 171 309 364 2.53e-13 68.6
Msa0544570 MtrunA17_Chr7g0243081 51.786 56 26 1 115 169 69 124 5.02e-13 67.0
Msa0544570 MtrunA17_Chr1g0162931 53.571 56 25 1 115 169 16 71 5.98e-13 66.6
Msa0544570 MtrunA17_Chr1g0175091 52.632 57 26 1 115 170 256 312 6.56e-13 67.0
Msa0544570 MtrunA17_Chr5g0400241 52.542 59 28 0 116 174 310 368 6.70e-13 67.0
Msa0544570 MtrunA17_Chr4g0062921 47.368 76 38 2 108 182 227 301 7.56e-13 67.0
Msa0544570 MtrunA17_Chr7g0258551 53.571 56 25 1 115 169 210 265 8.36e-13 66.6
Msa0544570 MtrunA17_Chr3g0095611 53.571 56 25 1 115 169 17 72 1.63e-12 64.3
Msa0544570 MtrunA17_Chr2g0291021 58.182 55 22 1 117 170 49 103 2.08e-12 65.1
Msa0544570 MtrunA17_Chr8g0356501 54.237 59 26 1 113 170 33 91 2.85e-12 65.1
Msa0544570 MtrunA17_Chr2g0310011 54.237 59 26 1 113 170 31 89 3.39e-12 64.7
Msa0544570 MtrunA17_Chr8g0379121 50.000 56 27 1 115 169 109 164 4.39e-12 64.7
Msa0544570 MtrunA17_Chr1g0175071 53.968 63 28 1 111 172 171 233 4.86e-12 64.3
Msa0544570 MtrunA17_Chr1g0197171 54.237 59 26 1 113 170 40 98 6.70e-12 63.5
Msa0544570 MtrunA17_Chr1g0175081 45.614 57 30 1 115 170 20 76 8.47e-12 59.7
Msa0544570 MtrunA17_Chr1g0210911 51.786 56 26 1 115 169 20 75 8.76e-12 63.5
Msa0544570 MtrunA17_Chr5g0422621 50.769 65 31 1 112 175 193 257 1.17e-11 63.2
Msa0544570 MtrunA17_Chr2g0290991 48.485 66 33 1 113 177 35 100 2.12e-11 62.4
Msa0544570 MtrunA17_Chr4g0045361 50.820 61 29 1 115 174 272 332 2.42e-11 62.4
Msa0544570 MtrunA17_Chr2g0320231 50.000 56 27 1 115 169 95 150 2.48e-11 62.4
Msa0544570 MtrunA17_Chr5g0409731 50.847 59 28 1 113 170 21 79 3.03e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544570 AT2G01760.1 29.856 278 103 6 7 194 4 279 9.52e-29 111
Msa0544570 AT2G01760.3 37.427 171 69 4 40 174 24 192 6.98e-26 102
Msa0544570 AT2G01760.2 35.233 193 85 5 40 194 117 307 8.45e-26 103
Msa0544570 AT3G16857.2 30.855 269 89 6 10 181 33 301 9.06e-25 102
Msa0544570 AT3G16857.1 30.855 269 89 7 10 181 33 301 9.38e-25 102
Msa0544570 AT4G31920.1 29.487 234 96 5 10 177 13 243 3.18e-24 100
Msa0544570 AT2G25180.1 27.208 283 127 5 10 217 13 291 1.41e-23 98.6
Msa0544570 AT3G16857.3 36.170 188 74 5 40 181 44 231 4.61e-23 97.4
Msa0544570 AT1G67710.1 30.738 244 89 5 11 174 8 251 1.28e-22 95.9
Msa0544570 AT1G67710.3 38.415 164 72 4 40 174 14 177 2.86e-22 94.4
Msa0544570 AT1G67710.2 37.805 164 73 4 40 174 23 186 7.24e-22 93.2
Msa0544570 AT5G58080.1 40.523 153 60 5 49 174 103 251 1.51e-21 92.8
Msa0544570 AT3G62670.1 35.849 159 79 6 40 175 116 274 1.01e-19 87.0
Msa0544570 AT5G07210.1 50.588 85 38 1 98 178 207 291 4.70e-17 79.7
Msa0544570 AT5G07210.2 50.588 85 38 1 98 178 199 283 4.91e-17 79.7
Msa0544570 AT3G04030.1 61.818 55 20 1 117 170 45 99 9.01e-17 78.6
Msa0544570 AT3G04030.3 61.818 55 20 1 117 170 45 99 9.91e-17 78.6
Msa0544570 AT5G18240.5 41.000 100 50 3 117 213 45 138 1.12e-16 78.2
Msa0544570 AT5G18240.2 41.000 100 50 3 117 213 45 138 1.13e-16 78.2
Msa0544570 AT5G18240.3 41.000 100 50 3 117 213 45 138 1.13e-16 78.2
Msa0544570 AT5G18240.1 41.000 100 50 3 117 213 45 138 1.17e-16 78.2
Msa0544570 AT5G18240.4 41.000 100 50 3 117 213 45 138 1.17e-16 78.2
Msa0544570 AT5G29000.4 41.176 102 52 3 69 169 190 284 3.71e-16 76.3
Msa0544570 AT5G29000.1 41.176 102 52 3 69 169 147 241 3.84e-16 76.6
Msa0544570 AT5G29000.3 41.176 102 52 3 69 169 147 241 3.84e-16 76.6
Msa0544570 AT5G29000.2 41.176 102 52 3 69 169 190 284 4.12e-16 76.6
Msa0544570 AT5G59570.2 46.835 79 39 1 96 174 123 198 1.15e-15 74.7
Msa0544570 AT5G59570.1 46.835 79 39 1 96 174 123 198 1.15e-15 74.7
Msa0544570 AT3G04030.2 57.407 54 23 0 117 170 45 98 1.18e-15 75.5
Msa0544570 AT3G46640.3 42.553 94 51 1 93 186 123 213 1.18e-15 74.7
Msa0544570 AT3G46640.2 42.553 94 51 1 93 186 123 213 1.53e-15 74.7
Msa0544570 AT3G46640.1 42.553 94 51 1 93 186 123 213 1.53e-15 74.7
Msa0544570 AT2G01060.1 44.681 94 50 2 106 198 4 96 1.56e-15 73.9
Msa0544570 AT5G05090.1 44.444 90 38 2 85 174 61 138 1.86e-15 73.6
Msa0544570 AT3G10760.1 50.000 72 34 1 103 174 93 162 3.48e-15 73.6
Msa0544570 AT3G04450.1 50.794 63 30 1 108 169 229 291 7.46e-15 73.2
Msa0544570 AT3G04450.3 50.794 63 30 1 108 169 229 291 7.79e-15 72.4
Msa0544570 AT3G04450.4 50.794 63 30 1 108 169 189 251 7.84e-15 73.2
Msa0544570 AT3G04450.2 50.794 63 30 1 108 169 189 251 7.84e-15 73.2
Msa0544570 AT2G40970.1 54.237 59 27 0 116 174 104 162 1.06e-14 71.2
Msa0544570 AT4G13640.1 41.584 101 40 3 117 216 37 119 3.56e-14 70.5
Msa0544570 AT4G13640.2 41.584 101 40 3 117 216 37 119 3.66e-14 70.5
Msa0544570 AT5G44190.1 58.621 58 24 0 116 173 146 203 4.03e-14 70.9
Msa0544570 AT5G44190.2 58.621 58 24 0 116 173 146 203 4.49e-14 70.5
Msa0544570 AT4G28610.1 60.000 55 21 1 117 170 225 279 9.04e-14 70.1
Msa0544570 AT5G49240.1 27.236 246 99 8 1 166 27 272 1.11e-13 68.9
Msa0544570 AT1G69580.1 40.230 87 46 2 117 202 34 115 1.56e-13 68.9
Msa0544570 AT1G69580.2 40.230 87 46 2 117 202 34 115 1.70e-13 68.9
Msa0544570 AT2G27070.1 44.318 88 45 1 91 174 195 282 3.46e-13 68.6
Msa0544570 AT3G24120.2 48.529 68 34 1 117 183 41 108 3.88e-13 67.4
Msa0544570 AT3G24120.1 48.529 68 34 1 117 183 41 108 3.90e-13 67.4
Msa0544570 AT2G20570.1 56.897 58 25 0 116 173 152 209 6.01e-13 67.4
Msa0544570 AT1G25550.1 46.914 81 42 1 97 176 189 269 6.96e-13 67.0
Msa0544570 AT1G14600.1 61.538 52 19 1 119 169 25 76 8.19e-13 66.2
Msa0544570 AT5G06800.3 58.182 55 22 1 117 170 192 246 8.20e-13 66.2
Msa0544570 AT3G13040.3 42.857 91 44 3 109 197 232 316 9.51e-13 67.0
Msa0544570 AT3G13040.1 42.857 91 44 3 109 197 232 316 9.51e-13 67.0
Msa0544570 AT3G13040.2 42.857 91 44 3 109 197 232 316 9.51e-13 67.0
Msa0544570 AT2G40260.1 55.357 56 24 1 115 169 80 135 1.32e-12 66.6
Msa0544570 AT5G06800.2 58.182 55 22 1 117 170 192 246 1.33e-12 66.6
Msa0544570 AT5G06800.1 58.182 55 22 1 117 170 192 246 1.42e-12 66.2
Msa0544570 AT3G12730.1 37.755 98 58 2 117 213 23 118 2.13e-12 64.7
Msa0544570 AT1G79430.2 39.623 106 58 2 98 202 15 115 3.92e-12 65.1
Msa0544570 AT2G20570.2 58.182 55 23 0 119 173 171 225 4.16e-12 65.1
Msa0544570 AT4G18020.8 47.692 65 34 0 117 181 296 360 4.39e-12 65.1
Msa0544570 AT4G18020.11 47.692 65 34 0 117 181 296 360 4.39e-12 65.1
Msa0544570 AT4G18020.4 47.692 65 34 0 117 181 296 360 4.39e-12 65.1
Msa0544570 AT4G18020.5 47.692 65 34 0 117 181 296 360 4.39e-12 65.1
Msa0544570 AT4G18020.10 47.692 65 34 0 117 181 296 360 4.39e-12 65.1
Msa0544570 AT4G18020.7 47.692 65 34 0 117 181 296 360 4.39e-12 65.1
Msa0544570 AT4G18020.3 47.692 65 34 0 117 181 296 360 4.52e-12 65.1
Msa0544570 AT4G18020.2 47.692 65 34 0 117 181 296 360 4.52e-12 65.1
Msa0544570 AT4G18020.1 47.692 65 34 0 117 181 296 360 4.52e-12 65.1
Msa0544570 AT4G18020.6 47.692 65 34 0 117 181 296 360 4.52e-12 65.1
Msa0544570 AT4G18020.9 47.692 65 34 0 117 181 296 360 4.52e-12 65.1
Msa0544570 AT2G20400.1 59.259 54 21 1 117 169 231 284 4.99e-12 64.7
Msa0544570 AT2G20400.2 59.259 54 21 1 117 169 231 284 5.15e-12 64.7
Msa0544570 AT4G04605.1 51.786 56 26 1 115 169 12 67 9.09e-12 62.8
Msa0544570 AT1G68670.1 46.988 83 42 2 95 176 194 275 1.53e-11 63.2
Msa0544570 AT5G45580.1 52.542 59 27 1 113 170 3 61 1.87e-11 62.4
Msa0544570 AT5G45580.2 41.250 80 46 1 113 191 19 98 2.00e-11 62.4
Msa0544570 AT2G03500.1 50.000 62 30 1 116 176 232 293 2.02e-11 63.2
Msa0544570 AT2G38300.1 48.214 56 28 1 115 169 52 107 3.27e-11 62.4
Msa0544570 AT2G42660.1 50.943 53 25 1 118 169 51 103 5.22e-11 61.2
Msa0544570 AT2G02060.2 50.820 61 29 1 119 178 31 91 7.34e-11 60.5
Msa0544570 AT2G02060.1 50.820 61 29 1 119 178 31 91 7.34e-11 60.5

Find 62 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATTCCCTGCTGGTCTA+AGG 0.235965 4_1:-33374134 Msa0544570:CDS
CAAAGTGATTCTCAAAATTA+TGG 0.246433 4_1:-33370677 Msa0544570:CDS
ACATGTTGCTAGTCATTTAC+AGG 0.286115 4_1:-33370632 Msa0544570:intron
AACTGCATCAACGATTTCTA+TGG 0.292867 4_1:-33370824 Msa0544570:CDS
ATCCTACCTTTACAACCTTA+TGG 0.307805 4_1:-33370343 Msa0544570:CDS
CTCAAAATTATGGATGTTCC+TGG 0.317981 4_1:-33370667 Msa0544570:CDS
CTAAGAATTCTTTAATTAAA+CGG 0.349796 4_1:+33370312 None:intergenic
AGAAATCGTTGATGCAGTTC+TGG 0.372917 4_1:+33370828 None:intergenic
CACATATTGGACTAAGCCTT+TGG 0.377509 4_1:-33371021 Msa0544570:CDS
AATTATGGATGTTCCTGGTT+TGG 0.386251 4_1:-33370662 Msa0544570:CDS
ATTATGGATGTTCCTGGTTT+GGG 0.388266 4_1:-33370661 Msa0544570:CDS
TCTTTAATTAAACGGCATCT+AGG 0.403700 4_1:+33370320 None:intergenic
CTGAATGGATTGATCAGAAT+CGG 0.412574 4_1:-33370407 Msa0544570:CDS
ATGATGGGTTGTCAATGAAA+TGG 0.416234 4_1:+33374151 None:intergenic
AATAAAGAATATGAAATTGT+TGG 0.416766 4_1:-33370945 Msa0544570:CDS
AATGTCGTTTGCAGAAATAT+AGG 0.426550 4_1:-33370503 Msa0544570:intron
AATGTGGGGCTTGCACATAT+TGG 0.439955 4_1:-33371034 Msa0544570:CDS
TTCTGGCGACCAAGACAAAC+GGG 0.460294 4_1:+33370845 None:intergenic
CTTAGACCAGCAGGGAATGA+TGG 0.461231 4_1:+33374135 None:intergenic
AAAAGATACACATGCAAAGA+AGG 0.470493 4_1:-33370868 Msa0544570:CDS
CAAAGAAGGCCCGTTTGTCT+TGG 0.473177 4_1:-33370854 Msa0544570:CDS
TACTGTTCTTAACACTATTG+AGG 0.477508 4_1:-33374088 Msa0544570:CDS
AACAGTAATGTCATGATCAA+TGG 0.479830 4_1:+33374104 None:intergenic
ACGATGACTTTCTAGCTGAA+TGG 0.481545 4_1:-33370383 Msa0544570:CDS
GATGTTCCTGGTTTGGGTGT+AGG 0.487511 4_1:-33370655 Msa0544570:CDS
GAATGGATTGACTGTGGGGC+GGG 0.487587 4_1:-33370366 Msa0544570:CDS
TAGCTGAATGGATTGACTGT+GGG 0.492334 4_1:-33370371 Msa0544570:CDS
GTTCTGGCGACCAAGACAAA+CGG 0.493157 4_1:+33370844 None:intergenic
GCAATAACCCTTAGACCAGC+AGG 0.494502 4_1:+33374126 None:intergenic
TAAACGGCATCTAGGCCATA+AGG 0.496018 4_1:+33370328 None:intergenic
TTATGACGTCTATTCAATGT+GGG 0.503265 4_1:-33371049 Msa0544570:CDS
AGACGTCATAACAGAACATT+CGG 0.504101 4_1:+33371061 None:intergenic
AGGAAAGAATCATACTATCA+AGG 0.510494 4_1:+33370784 None:intergenic
TAGGATTCATTTGAAGAGAT+CGG 0.515087 4_1:-33370484 Msa0544570:CDS
ATCATTCCCTGCTGGTCTAA+GGG 0.515223 4_1:-33374133 Msa0544570:CDS
ATATGAAATTGTTGGAAGCT+CGG 0.515274 4_1:-33370937 Msa0544570:CDS
TGTAATCGATATCATTATCA+AGG 0.517908 4_1:-33374060 Msa0544570:intron
CTATGGGCTGTCAATCAACT+AGG 0.518108 4_1:-33370807 Msa0544570:CDS
GTGATAGCTCTCAAGCTGAA+TGG 0.519299 4_1:-33370422 Msa0544570:CDS
GACAACCCATCATTCCCTGC+TGG 0.534739 4_1:-33374141 Msa0544570:CDS
TGATGGGTTGTCAATGAAAT+GGG 0.537362 4_1:+33374152 None:intergenic
TGAATGGATTGATCAGAATC+GGG 0.540922 4_1:-33370406 Msa0544570:CDS
GTTATGACGTCTATTCAATG+TGG 0.541555 4_1:-33371050 Msa0544570:CDS
TTAGACCAGCAGGGAATGAT+GGG 0.555312 4_1:+33374136 None:intergenic
TCTAGGCCATAAGGTTGTAA+AGG 0.556671 4_1:+33370337 None:intergenic
ATCTTGACATCTTCAACCAA+AGG 0.557717 4_1:+33371005 None:intergenic
TGGCGACATGTTGTCAGAAA+CGG 0.580385 4_1:-33370978 Msa0544570:CDS
CTAGCTGAATGGATTGACTG+TGG 0.582882 4_1:-33370372 Msa0544570:CDS
ACTGCATCAACGATTTCTAT+GGG 0.587946 4_1:-33370823 Msa0544570:CDS
GGCCATAAGGTTGTAAAGGT+AGG 0.602949 4_1:+33370341 None:intergenic
ACATGTCCTACACCCAAACC+AGG 0.611300 4_1:+33370649 None:intergenic
AGCTGAATGGATTGACTGTG+GGG 0.620097 4_1:-33370370 Msa0544570:CDS
CGTCATAACAGAACATTCGG+TGG 0.637182 4_1:+33371064 None:intergenic
TCGGCTGACAAAACAAAACA+CGG 0.641210 4_1:-33370465 Msa0544570:CDS
TATGACGTCTATTCAATGTG+GGG 0.656901 4_1:-33371048 Msa0544570:CDS
TGAATGGATTGACTGTGGGG+CGG 0.657142 4_1:-33370367 Msa0544570:CDS
CGGCTGACAAAACAAAACAC+GGG 0.658379 4_1:-33370464 Msa0544570:CDS
CAATAACCCTTAGACCAGCA+GGG 0.674733 4_1:+33374127 None:intergenic
GACATGTTGTCAGAAACGGT+TGG 0.696935 4_1:-33370974 Msa0544570:CDS
TTGAAGATGTCAAGATCATG+TGG 0.717280 4_1:-33370998 Msa0544570:CDS
TGAAATTGTTGGAAGCTCGG+TGG 0.733305 4_1:-33370934 Msa0544570:CDS
GTTGCAGAAAATAGAAAACG+AGG 0.747338 4_1:-33370912 Msa0544570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGAATATGAAATTGT+TGG - chr4_1:33373532-33373551 Msa0544570:intron 15.0%
!!! ATACATTTGAAGTATTATTG+AGG + chr4_1:33370998-33371017 None:intergenic 20.0%
!! AAAGAAAGGAAAAGAAAAAA+AGG - chr4_1:33372804-33372823 Msa0544570:intron 20.0%
!!! TTATTTCTGTTTTTTAGTGA+TGG - chr4_1:33373381-33373400 Msa0544570:intron 20.0%
!!! ATAATTTTGAGAATCACTTT+GGG + chr4_1:33373801-33373820 None:intergenic 20.0%
! TGTAATCGATATCATTATCA+AGG - chr4_1:33370417-33370436 Msa0544570:CDS 25.0%
!!! ACACACTTTAGAATTGAATA+AGG + chr4_1:33370464-33370483 None:intergenic 25.0%
!! TACAATAAAAGAGTACATCA+AGG - chr4_1:33370639-33370658 Msa0544570:CDS 25.0%
!!! GCATTTTAATTTCCTCTTTT+TGG + chr4_1:33370802-33370821 None:intergenic 25.0%
! TTATTGAAGACAATTTGGTT+TGG + chr4_1:33371876-33371895 None:intergenic 25.0%
! TTTGGTTATTGAAGACAATT+TGG + chr4_1:33371881-33371900 None:intergenic 25.0%
! AATAACCAAATCTCAAGTTA+CGG - chr4_1:33371913-33371932 Msa0544570:intron 25.0%
!!! ATCATTTTTCCCAAATCTTA+GGG + chr4_1:33372527-33372546 None:intergenic 25.0%
! ATTCAATTTCATCTTCGATT+CGG + chr4_1:33372712-33372731 None:intergenic 25.0%
! ATCGAAGATGAAATTGAATT+AGG - chr4_1:33372713-33372732 Msa0544570:intron 25.0%
!! TACAATAAAAGAGTACATCA+AGG - chr4_1:33370639-33370658 Msa0544570:CDS 25.0%
! AATGAATTCTTACTAATGAC+AGG + chr4_1:33373287-33373306 None:intergenic 25.0%
! ACAAAGCAAAGAAAAGAATT+AGG + chr4_1:33373716-33373735 None:intergenic 25.0%
!!! CATAATTTTGAGAATCACTT+TGG + chr4_1:33373802-33373821 None:intergenic 25.0%
! CAAAGTGATTCTCAAAATTA+TGG - chr4_1:33373800-33373819 Msa0544570:intron 25.0%
AACAGTAATGTCATGATCAA+TGG + chr4_1:33370376-33370395 None:intergenic 30.0%
TACTGTTCTTAACACTATTG+AGG - chr4_1:33370389-33370408 Msa0544570:CDS 30.0%
GAGTATTAGTTACTAGTTAG+TGG + chr4_1:33370680-33370699 None:intergenic 30.0%
GTTAGTTAGAGCTAGTAATA+AGG + chr4_1:33370702-33370721 None:intergenic 30.0%
ACAAAGTTAACACCAAAAAG+AGG - chr4_1:33370787-33370806 Msa0544570:intron 30.0%
! CACATCAACTACTATCTTTT+TGG + chr4_1:33370840-33370859 None:intergenic 30.0%
!! ATTTTGCAAGATGTTTCTGT+TGG + chr4_1:33370929-33370948 None:intergenic 30.0%
TGCTTACATATCTACTTTGT+TGG + chr4_1:33371138-33371157 None:intergenic 30.0%
! AATATTGGTTGGATTTGGTT+TGG + chr4_1:33371174-33371193 None:intergenic 30.0%
! GATCAAATATTGGTTGGATT+TGG + chr4_1:33371179-33371198 None:intergenic 30.0%
TACTGCTTGAGATCAAATAT+TGG + chr4_1:33371189-33371208 None:intergenic 30.0%
CAAGAATCAAATCCATAACT+CGG - chr4_1:33371805-33371824 Msa0544570:intron 30.0%
! ACTTGAGATTTGGTTATTAC+TGG + chr4_1:33371911-33371930 None:intergenic 30.0%
TTCGATTAGAATCTGATTTC+TGG + chr4_1:33372250-33372269 None:intergenic 30.0%
TCAAAGAAAGAACAGAACAA+AGG - chr4_1:33372396-33372415 Msa0544570:intron 30.0%
ATCATTCTTTGGTCAATTTC+TGG + chr4_1:33372447-33372466 None:intergenic 30.0%
!! CATCATTTTTCCCAAATCTT+AGG + chr4_1:33372528-33372547 None:intergenic 30.0%
AGATTTGGGAAAAATGATGA+CGG - chr4_1:33372529-33372548 Msa0544570:intron 30.0%
! GTAACTGATTCAGAAAAGAA+AGG - chr4_1:33372790-33372809 Msa0544570:intron 30.0%
TGATACCATGTTAGTAAACA+TGG - chr4_1:33372968-33372987 Msa0544570:intron 30.0%
GAGTATTAGTTACTAGTTAG+TGG + chr4_1:33370680-33370699 None:intergenic 30.0%
GTTAGTTAGAGCTAGTAATA+AGG + chr4_1:33370702-33370721 None:intergenic 30.0%
AAGTCATAAACATCCATGTT+TGG + chr4_1:33373233-33373252 None:intergenic 30.0%
TTATGACGTCTATTCAATGT+GGG - chr4_1:33373428-33373447 Msa0544570:intron 30.0%
ATATGAAATTGTTGGAAGCT+CGG - chr4_1:33373540-33373559 Msa0544570:intron 30.0%
! TTTGCATGTGTATCTTTTGA+GGG + chr4_1:33373607-33373626 None:intergenic 30.0%
AAAAGATACACATGCAAAGA+AGG - chr4_1:33373609-33373628 Msa0544570:intron 30.0%
AGGAAAGAATCATACTATCA+AGG + chr4_1:33373696-33373715 None:intergenic 30.0%
!! GTCATTTACAGGTTTGTTTT+CGG - chr4_1:33373856-33373875 Msa0544570:intron 30.0%
! AATGTCGTTTGCAGAAATAT+AGG - chr4_1:33373974-33373993 Msa0544570:intron 30.0%
TAGGATTCATTTGAAGAGAT+CGG - chr4_1:33373993-33374012 Msa0544570:intron 30.0%
!! TGATGGGTTGTCAATGAAAT+GGG + chr4_1:33370328-33370347 None:intergenic 35.0%
!! ATGATGGGTTGTCAATGAAA+TGG + chr4_1:33370329-33370348 None:intergenic 35.0%
ATCAGAAGCTGTATTGCATT+TGG + chr4_1:33370530-33370549 None:intergenic 35.0%
TCTGATGCTGTTAGTAAACA+TGG - chr4_1:33370544-33370563 Msa0544570:intron 35.0%
GTACATCAAGGCCTATTTAT+AGG - chr4_1:33370651-33370670 Msa0544570:CDS 35.0%
! GTTAGTGGATGCCTATAAAT+AGG + chr4_1:33370665-33370684 None:intergenic 35.0%
TTCTCTTACCTTGAGTTTGA+GGG + chr4_1:33370746-33370765 None:intergenic 35.0%
TGATTGGAAGTCTTCTCTTA+TGG + chr4_1:33370891-33370910 None:intergenic 35.0%
TATTGAGGTTATACATCTGC+TGG + chr4_1:33370983-33371002 None:intergenic 35.0%
! GATTGGTTATTCATACTTGC+TGG + chr4_1:33371038-33371057 None:intergenic 35.0%
ATGAATAACCAATCCAGAAC+CGG - chr4_1:33371044-33371063 Msa0544570:CDS 35.0%
GCTTGAGATCAAATATTGGT+TGG + chr4_1:33371185-33371204 None:intergenic 35.0%
AGTAACTAACCAAAGCCATA+AGG - chr4_1:33371205-33371224 Msa0544570:intron 35.0%
! TTGTTAAGCGTTTTGCCTTA+TGG + chr4_1:33371223-33371242 None:intergenic 35.0%
ACCATCAACAAAGTCAACAA+AGG - chr4_1:33371288-33371307 Msa0544570:intron 35.0%
CCATCAACAAAGTCAACAAA+GGG - chr4_1:33371289-33371308 Msa0544570:intron 35.0%
CTTTGAGTATAGTTTCTGCT+TGG + chr4_1:33371380-33371399 None:intergenic 35.0%
TATCAACGCTTAACCATCAA+TGG - chr4_1:33371474-33371493 Msa0544570:intron 35.0%
CTTCTTGTAGCTTCTGTTAA+TGG + chr4_1:33371521-33371540 None:intergenic 35.0%
TGATAAGCTTCTGTCATGAA+TGG + chr4_1:33371590-33371609 None:intergenic 35.0%
AACTGTGTTCTATTGGAGTT+TGG + chr4_1:33371668-33371687 None:intergenic 35.0%
ACTGATGAACTGTGTTCTAT+TGG + chr4_1:33371675-33371694 None:intergenic 35.0%
ATAGAACACAGTTCATCAGT+AGG - chr4_1:33371675-33371694 Msa0544570:intron 35.0%
AAAAACTTCATGAACGATCC+AGG - chr4_1:33371702-33371721 Msa0544570:intron 35.0%
GTTATGGATTTGATTCTTGG+CGG + chr4_1:33371804-33371823 None:intergenic 35.0%
CGAGTTATGGATTTGATTCT+TGG + chr4_1:33371807-33371826 None:intergenic 35.0%
! TTTGTGGTTGTGATTGATTC+CGG + chr4_1:33371847-33371866 None:intergenic 35.0%
!! TTTGGTTTGGATGTTCTTTG+TGG + chr4_1:33371863-33371882 None:intergenic 35.0%
!! GTTATTACTGGCTTCTGATT+TGG + chr4_1:33371899-33371918 None:intergenic 35.0%
! AGATTCTGAACAACAGCTTT+TGG - chr4_1:33372214-33372233 Msa0544570:intron 35.0%
ATCCAAGATGAAACGAAATC+AGG - chr4_1:33372365-33372384 Msa0544570:intron 35.0%
TTCCTGATTTCGTTTCATCT+TGG + chr4_1:33372370-33372389 None:intergenic 35.0%
CGATTGAATCGATCATTCTT+TGG + chr4_1:33372458-33372477 None:intergenic 35.0%
AATCGCAAACCCTAAGATTT+GGG - chr4_1:33372515-33372534 Msa0544570:intron 35.0%
ATAAGACAAGCTCAACAGAA+TGG - chr4_1:33372588-33372607 Msa0544570:intron 35.0%
TTCGGTTTCGATATCTCAAT+CGG + chr4_1:33372748-33372767 None:intergenic 35.0%
! TATTTCTCTAGAAAGTGCAG+CGG - chr4_1:33372911-33372930 Msa0544570:intron 35.0%
GTACATCAAGGCCTATTTAT+AGG - chr4_1:33370651-33370670 Msa0544570:CDS 35.0%
! GTTAGTGGATGCCTATAAAT+AGG + chr4_1:33370665-33370684 None:intergenic 35.0%
AATAGATGCCTTGTACTTGT+TGG - chr4_1:33373163-33373182 Msa0544570:intron 35.0%
ATAGATGCCTTGTACTTGTT+GGG - chr4_1:33373164-33373183 Msa0544570:intron 35.0%
! TGAGTTGTAGGGTAACATTT+TGG + chr4_1:33373259-33373278 None:intergenic 35.0%
!!! GACAGGAATTTTGAGTTGTA+GGG + chr4_1:33373270-33373289 None:intergenic 35.0%
!!! TGACAGGAATTTTGAGTTGT+AGG + chr4_1:33373271-33373290 None:intergenic 35.0%
AGACGTCATAACAGAACATT+CGG + chr4_1:33373419-33373438 None:intergenic 35.0%
GTTATGACGTCTATTCAATG+TGG - chr4_1:33373427-33373446 Msa0544570:intron 35.0%
TATGACGTCTATTCAATGTG+GGG - chr4_1:33373429-33373448 Msa0544570:intron 35.0%
ATCTTGACATCTTCAACCAA+AGG + chr4_1:33373475-33373494 None:intergenic 35.0%
TTGAAGATGTCAAGATCATG+TGG - chr4_1:33373479-33373498 Msa0544570:intron 35.0%
GTTGCAGAAAATAGAAAACG+AGG - chr4_1:33373565-33373584 Msa0544570:intron 35.0%
! TTGCATGTGTATCTTTTGAG+GGG + chr4_1:33373606-33373625 None:intergenic 35.0%
! CTTTGCATGTGTATCTTTTG+AGG + chr4_1:33373608-33373627 None:intergenic 35.0%
AACTGCATCAACGATTTCTA+TGG - chr4_1:33373653-33373672 Msa0544570:intron 35.0%
ACTGCATCAACGATTTCTAT+GGG - chr4_1:33373654-33373673 Msa0544570:intron 35.0%
CTCAAAATTATGGATGTTCC+TGG - chr4_1:33373810-33373829 Msa0544570:intron 35.0%
AATTATGGATGTTCCTGGTT+TGG - chr4_1:33373815-33373834 Msa0544570:intron 35.0%
ATTATGGATGTTCCTGGTTT+GGG - chr4_1:33373816-33373835 Msa0544570:intron 35.0%
ACATGTTGCTAGTCATTTAC+AGG - chr4_1:33373845-33373864 Msa0544570:intron 35.0%
!! TTTACAGGTTTGTTTTCGGA+AGG - chr4_1:33373860-33373879 Msa0544570:intron 35.0%
ACGGGAAGAAAAAAACTAAG+TGG - chr4_1:33374031-33374050 Msa0544570:intron 35.0%
!! CTGAATGGATTGATCAGAAT+CGG - chr4_1:33374070-33374089 Msa0544570:CDS 35.0%
!! TGAATGGATTGATCAGAATC+GGG - chr4_1:33374071-33374090 Msa0544570:CDS 35.0%
ATCCTACCTTTACAACCTTA+TGG - chr4_1:33374134-33374153 Msa0544570:CDS 35.0%
GTTAGTAAACATGGCATCCA+AGG - chr4_1:33370553-33370572 Msa0544570:intron 40.0%
TTAAGCTTCTCTCTCTACCT+TGG + chr4_1:33370573-33370592 None:intergenic 40.0%
GTTCTCTTACCTTGAGTTTG+AGG + chr4_1:33370747-33370766 None:intergenic 40.0%
! GAGAACTCTTAGCTTGAGTT+TGG - chr4_1:33370761-33370780 Msa0544570:intron 40.0%
GAGGAAACAAGTGGTTTGAT+TGG + chr4_1:33370907-33370926 None:intergenic 40.0%
TTTCTGTTGGAGGAAACAAG+TGG + chr4_1:33370916-33370935 None:intergenic 40.0%
! TTGCAAGATGTTTCTGTTGG+AGG + chr4_1:33370926-33370945 None:intergenic 40.0%
!!! GAGCTGTTTTGGTTAGTAGT+TGG + chr4_1:33370959-33370978 None:intergenic 40.0%
TGAATAACCAATCCAGAACC+GGG - chr4_1:33371045-33371064 Msa0544570:CDS 40.0%
!! TGGTTGGATTTGGTTTGGTT+TGG + chr4_1:33371169-33371188 None:intergenic 40.0%
AGTGGTTAAGCCTAGAGTTA+TGG + chr4_1:33371257-33371276 None:intergenic 40.0%
TGATGGTAGCTTCTGTTAAG+TGG + chr4_1:33371275-33371294 None:intergenic 40.0%
!! CCCTTTGTTGACTTTGTTGA+TGG + chr4_1:33371292-33371311 None:intergenic 40.0%
CAACATGCTTAACCACCATA+GGG - chr4_1:33371312-33371331 Msa0544570:intron 40.0%
GCTATGATCATCAAGCCATA+AGG - chr4_1:33371340-33371359 Msa0544570:intron 40.0%
! GTGGTTAAGCTTTTGCCTTA+TGG + chr4_1:33371358-33371377 None:intergenic 40.0%
TGAGTATAGTTTCTGCTTGG+TGG + chr4_1:33371377-33371396 None:intergenic 40.0%
! GTTGTTGTGCTTTTGTCAAG+TGG + chr4_1:33371408-33371427 None:intergenic 40.0%
CAAGCTTAACCACCTATCAA+AGG - chr4_1:33371427-33371446 Msa0544570:intron 40.0%
TGATTGCTTCTGCCTTTGAT+AGG + chr4_1:33371442-33371461 None:intergenic 40.0%
GTTTGTGCTTCTGTTCATGA+TGG + chr4_1:33371624-33371643 None:intergenic 40.0%
! TATTGGAGTTTGGTTGATGC+TGG + chr4_1:33371658-33371677 None:intergenic 40.0%
ATCCAGGAAGAACAAAACAG+AGG - chr4_1:33371718-33371737 Msa0544570:intron 40.0%
CATATCAACAGAACCACTTG+AGG - chr4_1:33371748-33371767 Msa0544570:intron 40.0%
GAATCAAATCCATAACTCGG+TGG - chr4_1:33371808-33371827 Msa0544570:intron 40.0%
GATGACCGTAACTTGAGATT+TGG + chr4_1:33371921-33371940 None:intergenic 40.0%
!! TTGGTTCAGAAGCTGTTTTG+TGG + chr4_1:33371998-33372017 None:intergenic 40.0%
! TTGTGCTTCAGAAGCTGTTT+TGG + chr4_1:33372017-33372036 None:intergenic 40.0%
GAATCGCAAACCCTAAGATT+TGG - chr4_1:33372514-33372533 Msa0544570:intron 40.0%
AATCGTGAACAGAATCGCAA+AGG - chr4_1:33372565-33372584 Msa0544570:intron 40.0%
AAACTTGGTATCCACCTTGA+AGG + chr4_1:33372944-33372963 None:intergenic 40.0%
ACATGGTATCAGAGCAAACT+TGG + chr4_1:33372959-33372978 None:intergenic 40.0%
GGATGCCATGTTTACTAACA+TGG + chr4_1:33370552-33370571 None:intergenic 40.0%
GTTAGTAAACATGGCATCCA+TGG - chr4_1:33370553-33370572 Msa0544570:intron 40.0%
! GTTTTTCTCTCTACCTTCCA+TGG + chr4_1:33372997-33373016 None:intergenic 40.0%
CTTTCTTCCCAACAAGTACA+AGG + chr4_1:33373174-33373193 None:intergenic 40.0%
! CTTGTACTTGTTGGGAAGAA+AGG - chr4_1:33373172-33373191 Msa0544570:intron 40.0%
TGATGCTCATATGCCAAACA+TGG - chr4_1:33373217-33373236 Msa0544570:intron 40.0%
CACATATTGGACTAAGCCTT+TGG - chr4_1:33373456-33373475 Msa0544570:intron 40.0%
AGAAATCGTTGATGCAGTTC+TGG + chr4_1:33373652-33373671 None:intergenic 40.0%
TCGGCTGACAAAACAAAACA+CGG - chr4_1:33374012-33374031 Msa0544570:intron 40.0%
!! ACGATGACTTTCTAGCTGAA+TGG - chr4_1:33374094-33374113 Msa0544570:CDS 40.0%
!! TAGCTGAATGGATTGACTGT+GGG - chr4_1:33374106-33374125 Msa0544570:CDS 40.0%
TCTAGGCCATAAGGTTGTAA+AGG + chr4_1:33374143-33374162 None:intergenic 40.0%
TTAGACCAGCAGGGAATGAT+GGG + chr4_1:33370344-33370363 None:intergenic 45.0%
! ATCATTCCCTGCTGGTCTAA+GGG - chr4_1:33370344-33370363 Msa0544570:CDS 45.0%
CAATAACCCTTAGACCAGCA+GGG + chr4_1:33370353-33370372 None:intergenic 45.0%
AATAGCCTCCCTCAAACTCA+AGG - chr4_1:33370735-33370754 Msa0544570:intron 45.0%
TCTTACCTTGAGTTTGAGGG+AGG + chr4_1:33370743-33370762 None:intergenic 45.0%
! GTTTTCCTTGCCTACACCTT+TGG + chr4_1:33371076-33371095 None:intergenic 45.0%
!! GTTGGTTCTGCTAGTGATGT+TGG + chr4_1:33371120-33371139 None:intergenic 45.0%
! AGCGTTTTGCCTTATGGCTT+TGG + chr4_1:33371217-33371236 None:intergenic 45.0%
TGAGCAGAAGCCATAACTCT+AGG - chr4_1:33371244-33371263 Msa0544570:intron 45.0%
GCAACATGCTTAACCACCAT+AGG - chr4_1:33371311-33371330 Msa0544570:intron 45.0%
TGATCATAGCTTCTGCCCTA+TGG + chr4_1:33371330-33371349 None:intergenic 45.0%
TTGCTTCTGCCTTTGATAGG+TGG + chr4_1:33371439-33371458 None:intergenic 45.0%
CGTGACACTTCTTCCATTGA+TGG + chr4_1:33371490-33371509 None:intergenic 45.0%
AAACGACGCTTAACCATCCT+TGG - chr4_1:33371545-33371564 Msa0544570:intron 45.0%
!! AGCCTCTGTTTTGTTCTTCC+TGG + chr4_1:33371723-33371742 None:intergenic 45.0%
AGGAAGAACAAAACAGAGGC+TGG - chr4_1:33371722-33371741 Msa0544570:intron 45.0%
GATCTAATGCCACCGAGTTA+TGG + chr4_1:33371820-33371839 None:intergenic 45.0%
! GGTTGTGATTGATTCCGGTT+TGG + chr4_1:33371842-33371861 None:intergenic 45.0%
!! CAGCTTCTGAAACATGCTTC+TGG - chr4_1:33372059-33372078 Msa0544570:intron 45.0%
!! CAGCTTCTGAAACATGCTTC+TGG - chr4_1:33372059-33372078 Msa0544570:intron 45.0%
AGCTCAACAGAATGGAGACA+CGG - chr4_1:33372596-33372615 Msa0544570:intron 45.0%
ATCGAAACCGAATCCGAGAA+CGG - chr4_1:33372756-33372775 Msa0544570:intron 45.0%
ACGATTCTTCCTTCCGTTCT+CGG + chr4_1:33372772-33372791 None:intergenic 45.0%
GCAGCGGAAAATATCCTTCA+AGG - chr4_1:33372927-33372946 Msa0544570:intron 45.0%
GCGGAAAATATCCTTCAAGG+TGG - chr4_1:33372930-33372949 Msa0544570:intron 45.0%
GTAAACATGGCATCCATGGA+AGG - chr4_1:33372981-33373000 Msa0544570:intron 45.0%
CGTCATAACAGAACATTCGG+TGG + chr4_1:33373416-33373435 None:intergenic 45.0%
AATGTGGGGCTTGCACATAT+TGG - chr4_1:33373443-33373462 Msa0544570:intron 45.0%
TGGCGACATGTTGTCAGAAA+CGG - chr4_1:33373499-33373518 Msa0544570:intron 45.0%
GACATGTTGTCAGAAACGGT+TGG - chr4_1:33373503-33373522 Msa0544570:intron 45.0%
TGAAATTGTTGGAAGCTCGG+TGG - chr4_1:33373543-33373562 Msa0544570:intron 45.0%
! CTATGGGCTGTCAATCAACT+AGG - chr4_1:33373670-33373689 Msa0544570:intron 45.0%
CGGCTGACAAAACAAAACAC+GGG - chr4_1:33374013-33374032 Msa0544570:intron 45.0%
GTGATAGCTCTCAAGCTGAA+TGG - chr4_1:33374055-33374074 Msa0544570:intron 45.0%
!! CTAGCTGAATGGATTGACTG+TGG - chr4_1:33374105-33374124 Msa0544570:CDS 45.0%
!! AGCTGAATGGATTGACTGTG+GGG - chr4_1:33374107-33374126 Msa0544570:CDS 45.0%
GGCCATAAGGTTGTAAAGGT+AGG + chr4_1:33374139-33374158 None:intergenic 45.0%
TAAACGGCATCTAGGCCATA+AGG + chr4_1:33374152-33374171 None:intergenic 45.0%
CTTAGACCAGCAGGGAATGA+TGG + chr4_1:33370345-33370364 None:intergenic 50.0%
! CATCATTCCCTGCTGGTCTA+AGG - chr4_1:33370343-33370362 Msa0544570:CDS 50.0%
GCAATAACCCTTAGACCAGC+AGG + chr4_1:33370354-33370373 None:intergenic 50.0%
! CATCTGCTGGAGAGCTGTTT+TGG + chr4_1:33370970-33370989 None:intergenic 50.0%
ATAACCAATCCAGAACCGGG+AGG - chr4_1:33371048-33371067 Msa0544570:CDS 50.0%
! AGGTACCAAAGGTGTAGGCA+AGG - chr4_1:33371068-33371087 Msa0544570:CDS 50.0%
TCATAGCTTCTGCCCTATGG+TGG + chr4_1:33371327-33371346 None:intergenic 50.0%
GTTGTGCTTCTGTCCAAGGA+TGG + chr4_1:33371561-33371580 None:intergenic 50.0%
! AAGCGTTGTGCTTCTGTCCA+AGG + chr4_1:33371565-33371584 None:intergenic 50.0%
TCAAGCTCTTGCACCTCAAG+TGG + chr4_1:33371764-33371783 None:intergenic 50.0%
CGGTGGCATTAGATCCAAAC+CGG - chr4_1:33371825-33371844 Msa0544570:intron 50.0%
! AGCTGTACTTCAGAAGTGCG+TGG + chr4_1:33372139-33372158 None:intergenic 50.0%
ATGGAGACACGGATCGTAGA+CGG - chr4_1:33372607-33372626 Msa0544570:intron 50.0%
AAACCGAATCCGAGAACGGA+AGG - chr4_1:33372760-33372779 Msa0544570:intron 50.0%
CTTCCTTCCGTTCTCGGATT+CGG + chr4_1:33372766-33372785 None:intergenic 50.0%
CAAAGAAGGCCCGTTTGTCT+TGG - chr4_1:33373623-33373642 Msa0544570:intron 50.0%
TTCTGGCGACCAAGACAAAC+GGG + chr4_1:33373635-33373654 None:intergenic 50.0%
GTTCTGGCGACCAAGACAAA+CGG + chr4_1:33373636-33373655 None:intergenic 50.0%
!! GATGTTCCTGGTTTGGGTGT+AGG - chr4_1:33373822-33373841 Msa0544570:intron 50.0%
ACATGTCCTACACCCAAACC+AGG + chr4_1:33373831-33373850 None:intergenic 50.0%
!! TGAATGGATTGACTGTGGGG+CGG - chr4_1:33374110-33374129 Msa0544570:CDS 50.0%
GACAACCCATCATTCCCTGC+TGG - chr4_1:33370336-33370355 Msa0544570:exon 55.0%
CCTACACCTTTGGTACCTCC+CGG + chr4_1:33371066-33371085 None:intergenic 55.0%
!! GAATGGATTGACTGTGGGGC+GGG - chr4_1:33374111-33374130 Msa0544570:CDS 55.0%
!! GGTACCTCCCGGTTCTGGAT+TGG + chr4_1:33371055-33371074 None:intergenic 60.0%
CCTTTGGTACCTCCCGGTTC+TGG + chr4_1:33371060-33371079 None:intergenic 60.0%
!! CCAGAACCGGGAGGTACCAA+AGG - chr4_1:33371057-33371076 Msa0544570:CDS 60.0%
!! CCGGGAGGTACCAAAGGTGT+AGG - chr4_1:33371063-33371082 Msa0544570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33370321 33374178 33370321 ID=Msa0544570;Name=Msa0544570
chr4_1 mRNA 33370321 33374178 33370321 ID=Msa0544570-mRNA-1;Parent=Msa0544570;Name=Msa0544570-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.33|0.25|1|1|1|4|17|223
chr4_1 exon 33370321 33370511 33370321 ID=Msa0544570-mRNA-1:exon:8523;Parent=Msa0544570-mRNA-1
chr4_1 exon 33370633 33370709 33370633 ID=Msa0544570-mRNA-1:exon:8522;Parent=Msa0544570-mRNA-1
chr4_1 exon 33370799 33371101 33370799 ID=Msa0544570-mRNA-1:exon:8521;Parent=Msa0544570-mRNA-1
chr4_1 exon 33374061 33374178 33374061 ID=Msa0544570-mRNA-1:exon:8520;Parent=Msa0544570-mRNA-1
chr4_1 CDS 33374061 33374178 33374061 ID=Msa0544570-mRNA-1:cds;Parent=Msa0544570-mRNA-1
chr4_1 CDS 33370799 33371101 33370799 ID=Msa0544570-mRNA-1:cds;Parent=Msa0544570-mRNA-1
chr4_1 CDS 33370633 33370709 33370633 ID=Msa0544570-mRNA-1:cds;Parent=Msa0544570-mRNA-1
chr4_1 CDS 33370338 33370511 33370338 ID=Msa0544570-mRNA-1:cds;Parent=Msa0544570-mRNA-1
chr4_1 three_prime_UTR 33370321 33370337 33370321 ID=Msa0544570-mRNA-1:three_prime_utr;Parent=Msa0544570-mRNA-1
Gene Sequence

>Msa0544570

ATGGCCCATTTCATTGACAACCCATCATTCCCTGCTGGTCTAAGGGTTATTGCCATTGATCATGACATTACTGTTCTTAACACTATTGAGGAGATGTGTAATCGATATCATTATCAAGTGATGGCTGTTGATTCCACCGAATGTTCTGTTATGACGTCTATTCAATGTGGGGCTTGCACATATTGGACTAAGCCTTTGGTTGAAGATGTCAAGATCATGTGGCGACATGTTGTCAGAAACGGTTGGACTGAAAATAAAGAATATGAAATTGTTGGAAGCTCGGTGGTTGCAGAAAATAGAAAACGAGGTAGAGAAGATGATAACCCCTCAAAAGATACACATGCAAAGAAGGCCCGTTTGTCTTGGTCGCCAGAACTGCATCAACGATTTCTATGGGCTGTCAATCAACTAGGCCTTGATAAAGCAAGACCCAAAGTGATTCTCAAAATTATGGATGTTCCTGGTTTGGGTGTAGGACATGTTGCTAGTCATTTACAGAAATATAGGATTCATTTGAAGAGATCGGCTGACAAAACAAAACACGGGAAGAAAAAAACTAAGTGGAGTGATAGCTCTCAAGCTGAATGGATTGATCAGAATCGGGACGATGACTTTCTAGCTGAATGGATTGACTGTGGGGCGGGATCCTACCTTTACAACCTTATGGCCTAG
Protein sequence

>Msa0544570

MAHFIDNPSFPAGLRVIAIDHDITVLNTIEEMCNRYHYQVMAVDSTECSVMTSIQCGACTYWTKPLVEDVKIMWRHVVRNGWTENKEYEIVGSSVVAENRKRGREDDNPSKDTHAKKARLSWSPELHQRFLWAVNQLGLDKARPKVILKIMDVPGLGVGHVASHLQKYRIHLKRSADKTKHGKKKTKWSDSSQAEWIDQNRDDDFLAEWIDCGAGSYLYNLMA*