Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544580 | XP_013455007.2 | 87.500 | 312 | 38 | 1 | 1 | 311 | 1 | 312 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544580 | sp|Q5N6V8|ORR26_ORYSJ | 39.918 | 243 | 118 | 4 | 6 | 220 | 2 | 244 | 4.83e-54 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544580 | A0A396I0H3 | 87.500 | 312 | 38 | 1 | 1 | 311 | 1 | 312 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0544580 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544580 | MtrunA17_Chr4g0009851 | 87.500 | 312 | 38 | 1 | 1 | 311 | 1 | 312 | 0.0 | 565 |
| Msa0544580 | MtrunA17_Chr4g0009981 | 84.170 | 259 | 41 | 0 | 53 | 311 | 1 | 259 | 5.55e-166 | 461 |
| Msa0544580 | MtrunA17_Chr4g0009901 | 71.250 | 240 | 69 | 0 | 1 | 240 | 1 | 240 | 4.65e-121 | 348 |
| Msa0544580 | MtrunA17_Chr4g0011071 | 78.102 | 137 | 30 | 0 | 55 | 191 | 35 | 171 | 1.78e-76 | 231 |
| Msa0544580 | MtrunA17_Chr6g0471041 | 46.711 | 304 | 141 | 8 | 1 | 294 | 1 | 293 | 8.49e-74 | 233 |
| Msa0544580 | MtrunA17_Chr1g0161431 | 36.944 | 360 | 162 | 8 | 13 | 307 | 14 | 373 | 3.64e-66 | 218 |
| Msa0544580 | MtrunA17_Chr3g0123131 | 40.678 | 236 | 112 | 3 | 13 | 220 | 16 | 251 | 6.77e-58 | 195 |
| Msa0544580 | MtrunA17_Chr4g0009991 | 76.068 | 117 | 27 | 1 | 101 | 217 | 1 | 116 | 1.57e-56 | 179 |
| Msa0544580 | MtrunA17_Chr4g0067981 | 41.026 | 234 | 112 | 2 | 13 | 220 | 34 | 267 | 1.97e-56 | 193 |
| Msa0544580 | MtrunA17_Chr2g0294911 | 38.433 | 268 | 139 | 3 | 13 | 254 | 32 | 299 | 2.94e-56 | 191 |
| Msa0544580 | MtrunA17_Chr8g0376881 | 40.171 | 234 | 114 | 3 | 13 | 220 | 28 | 261 | 1.05e-55 | 189 |
| Msa0544580 | MtrunA17_Chr7g0275401 | 37.705 | 244 | 123 | 3 | 13 | 227 | 8 | 251 | 6.55e-51 | 170 |
| Msa0544580 | MtrunA17_Chr1g0149841 | 39.831 | 236 | 114 | 3 | 13 | 220 | 8 | 243 | 9.48e-50 | 172 |
| Msa0544580 | MtrunA17_Chr8g0391911 | 40.435 | 230 | 111 | 3 | 14 | 217 | 13 | 242 | 9.69e-49 | 163 |
| Msa0544580 | MtrunA17_Chr3g0137101 | 39.583 | 240 | 113 | 4 | 13 | 220 | 11 | 250 | 5.42e-48 | 170 |
| Msa0544580 | MtrunA17_Chr8g0383961 | 42.481 | 266 | 115 | 8 | 1 | 254 | 1 | 240 | 1.49e-47 | 160 |
| Msa0544580 | MtrunA17_Chr7g0275891 | 34.007 | 297 | 151 | 7 | 13 | 266 | 8 | 302 | 4.77e-45 | 156 |
| Msa0544580 | MtrunA17_Chr1g0149851 | 33.444 | 302 | 157 | 6 | 13 | 270 | 8 | 309 | 4.37e-43 | 155 |
| Msa0544580 | MtrunA17_Chr5g0423031 | 71.910 | 89 | 25 | 0 | 1 | 89 | 1 | 89 | 9.52e-43 | 145 |
| Msa0544580 | MtrunA17_Chr4g0074401 | 32.794 | 247 | 138 | 4 | 13 | 231 | 20 | 266 | 1.99e-42 | 154 |
| Msa0544580 | MtrunA17_Chr4g0010001 | 71.910 | 89 | 25 | 0 | 1 | 89 | 1 | 89 | 2.16e-42 | 141 |
| Msa0544580 | MtrunA17_Chr2g0304841 | 34.524 | 252 | 128 | 4 | 13 | 227 | 21 | 272 | 3.05e-42 | 154 |
| Msa0544580 | MtrunA17_Chr4g0074411 | 33.607 | 244 | 137 | 4 | 13 | 231 | 21 | 264 | 5.80e-42 | 153 |
| Msa0544580 | MtrunA17_Chr3g0134461 | 39.614 | 207 | 98 | 4 | 13 | 217 | 11 | 192 | 1.60e-40 | 140 |
| Msa0544580 | MtrunA17_Chr3g0134481 | 34.842 | 221 | 106 | 3 | 4 | 223 | 4 | 187 | 2.71e-38 | 134 |
| Msa0544580 | MtrunA17_Chr6g0456631 | 43.919 | 148 | 81 | 1 | 14 | 159 | 13 | 160 | 9.30e-38 | 132 |
| Msa0544580 | MtrunA17_Chr4g0074421 | 36.464 | 181 | 93 | 3 | 59 | 217 | 2 | 182 | 1.75e-36 | 129 |
| Msa0544580 | MtrunA17_Chr1g0149831 | 38.333 | 180 | 81 | 3 | 68 | 220 | 1 | 177 | 9.98e-31 | 115 |
| Msa0544580 | MtrunA17_Chr6g0473731 | 30.220 | 182 | 109 | 3 | 89 | 257 | 10 | 186 | 9.22e-22 | 95.1 |
| Msa0544580 | MtrunA17_Chr8g0350761 | 23.481 | 362 | 203 | 9 | 13 | 307 | 20 | 374 | 2.17e-20 | 91.3 |
| Msa0544580 | MtrunA17_Chr7g0223971 | 28.169 | 213 | 97 | 5 | 91 | 254 | 1 | 206 | 1.65e-17 | 82.8 |
| Msa0544580 | MtrunA17_Chr2g0324891 | 39.560 | 91 | 53 | 2 | 136 | 224 | 127 | 217 | 5.14e-14 | 72.0 |
| Msa0544580 | MtrunA17_Chr5g0417521 | 47.826 | 69 | 31 | 2 | 168 | 231 | 15 | 83 | 1.01e-13 | 70.9 |
| Msa0544580 | MtrunA17_Chr7g0254981 | 39.796 | 98 | 56 | 2 | 159 | 255 | 41 | 136 | 1.76e-13 | 69.3 |
| Msa0544580 | MtrunA17_Chr7g0261911 | 43.011 | 93 | 48 | 3 | 159 | 249 | 253 | 342 | 2.74e-13 | 70.1 |
| Msa0544580 | MtrunA17_Chr6g0461641 | 55.556 | 54 | 23 | 1 | 168 | 220 | 42 | 95 | 5.45e-13 | 68.9 |
| Msa0544580 | MtrunA17_Chr4g0040481 | 46.552 | 58 | 31 | 0 | 167 | 224 | 157 | 214 | 6.57e-13 | 68.9 |
| Msa0544580 | MtrunA17_Chr5g0400241 | 34.940 | 83 | 54 | 0 | 167 | 249 | 310 | 392 | 1.37e-12 | 68.2 |
| Msa0544580 | MtrunA17_Chr4g0042451 | 51.852 | 54 | 25 | 1 | 168 | 220 | 17 | 70 | 1.58e-12 | 67.4 |
| Msa0544580 | MtrunA17_Chr2g0321461 | 53.704 | 54 | 24 | 1 | 168 | 220 | 45 | 98 | 2.14e-12 | 67.0 |
| Msa0544580 | MtrunA17_Chr2g0291021 | 57.407 | 54 | 22 | 1 | 168 | 220 | 49 | 102 | 5.92e-12 | 65.5 |
| Msa0544580 | MtrunA17_Chr7g0274471 | 47.222 | 72 | 36 | 2 | 168 | 237 | 218 | 289 | 9.66e-12 | 65.5 |
| Msa0544580 | MtrunA17_Chr8g0345901 | 28.226 | 124 | 85 | 2 | 12 | 131 | 34 | 157 | 1.04e-11 | 65.5 |
| Msa0544580 | MtrunA17_Chr7g0242521 | 54.286 | 70 | 23 | 4 | 155 | 220 | 5 | 69 | 1.13e-11 | 63.5 |
| Msa0544580 | MtrunA17_Chr4g0054981 | 50.000 | 54 | 27 | 0 | 167 | 220 | 309 | 362 | 1.16e-11 | 65.5 |
| Msa0544580 | MtrunA17_Chr7g0255711 | 48.276 | 58 | 30 | 0 | 167 | 224 | 90 | 147 | 2.41e-11 | 63.5 |
| Msa0544580 | MtrunA17_Chr1g0190301 | 51.724 | 58 | 27 | 1 | 164 | 220 | 171 | 228 | 2.65e-11 | 63.9 |
| Msa0544580 | MtrunA17_Chr1g0198601 | 46.575 | 73 | 31 | 2 | 149 | 220 | 199 | 264 | 3.04e-11 | 63.5 |
| Msa0544580 | MtrunA17_Chr4g0031961 | 46.552 | 58 | 31 | 0 | 167 | 224 | 130 | 187 | 3.54e-11 | 63.2 |
| Msa0544580 | MtrunA17_Chr7g0258551 | 50.000 | 56 | 27 | 1 | 166 | 220 | 210 | 265 | 5.82e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544580 | AT2G01760.1 | 38.039 | 255 | 119 | 5 | 13 | 230 | 10 | 262 | 4.22e-54 | 181 |
| Msa0544580 | AT1G67710.1 | 41.772 | 237 | 109 | 4 | 13 | 220 | 10 | 246 | 8.07e-54 | 184 |
| Msa0544580 | AT3G16857.1 | 38.976 | 254 | 109 | 6 | 13 | 220 | 36 | 289 | 1.54e-50 | 177 |
| Msa0544580 | AT3G16857.2 | 38.976 | 254 | 109 | 6 | 13 | 220 | 36 | 289 | 1.89e-50 | 177 |
| Msa0544580 | AT2G01760.2 | 34.276 | 283 | 119 | 6 | 13 | 230 | 10 | 290 | 4.02e-48 | 166 |
| Msa0544580 | AT4G31920.1 | 36.179 | 246 | 142 | 4 | 13 | 246 | 16 | 258 | 3.67e-47 | 166 |
| Msa0544580 | AT2G25180.1 | 36.638 | 232 | 123 | 3 | 13 | 220 | 16 | 247 | 5.81e-44 | 159 |
| Msa0544580 | AT5G58080.1 | 38.793 | 232 | 116 | 5 | 13 | 220 | 17 | 246 | 2.47e-40 | 149 |
| Msa0544580 | AT3G16857.3 | 37.615 | 218 | 90 | 6 | 49 | 220 | 2 | 219 | 5.49e-39 | 145 |
| Msa0544580 | AT2G01760.3 | 35.678 | 199 | 90 | 4 | 68 | 230 | 1 | 197 | 1.39e-36 | 133 |
| Msa0544580 | AT1G67710.2 | 41.436 | 181 | 78 | 3 | 68 | 220 | 1 | 181 | 9.09e-35 | 131 |
| Msa0544580 | AT5G49240.1 | 30.508 | 236 | 137 | 4 | 9 | 217 | 37 | 272 | 7.84e-31 | 117 |
| Msa0544580 | AT1G49190.1 | 26.074 | 326 | 194 | 9 | 16 | 303 | 36 | 352 | 1.89e-27 | 110 |
| Msa0544580 | AT3G62670.1 | 29.098 | 244 | 148 | 6 | 6 | 226 | 33 | 274 | 4.22e-27 | 110 |
| Msa0544580 | AT1G67710.3 | 39.752 | 161 | 69 | 3 | 88 | 220 | 12 | 172 | 4.14e-26 | 107 |
| Msa0544580 | AT5G07210.2 | 27.203 | 261 | 134 | 7 | 14 | 220 | 16 | 274 | 4.79e-24 | 102 |
| Msa0544580 | AT5G07210.1 | 26.394 | 269 | 134 | 8 | 14 | 220 | 16 | 282 | 1.66e-21 | 95.1 |
| Msa0544580 | AT2G27070.1 | 25.379 | 264 | 138 | 9 | 14 | 220 | 16 | 277 | 1.43e-18 | 86.7 |
| Msa0544580 | AT5G29000.1 | 34.161 | 161 | 90 | 5 | 103 | 254 | 123 | 276 | 2.09e-17 | 82.0 |
| Msa0544580 | AT5G29000.3 | 34.161 | 161 | 90 | 5 | 103 | 254 | 123 | 276 | 2.09e-17 | 82.0 |
| Msa0544580 | AT5G29000.2 | 34.161 | 161 | 90 | 5 | 103 | 254 | 166 | 319 | 2.58e-17 | 82.4 |
| Msa0544580 | AT5G29000.4 | 36.429 | 140 | 73 | 5 | 103 | 233 | 166 | 298 | 2.62e-17 | 81.3 |
| Msa0544580 | AT1G49190.2 | 31.933 | 119 | 80 | 1 | 16 | 133 | 36 | 154 | 7.81e-15 | 75.5 |
| Msa0544580 | AT2G01060.1 | 52.308 | 65 | 30 | 1 | 157 | 220 | 4 | 68 | 3.19e-14 | 72.0 |
| Msa0544580 | AT5G44190.1 | 51.724 | 58 | 28 | 0 | 167 | 224 | 146 | 203 | 1.17e-13 | 71.2 |
| Msa0544580 | AT5G44190.2 | 51.724 | 58 | 28 | 0 | 167 | 224 | 146 | 203 | 1.40e-13 | 70.9 |
| Msa0544580 | AT3G04030.1 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 4.23e-13 | 69.7 |
| Msa0544580 | AT3G04030.3 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 4.91e-13 | 69.3 |
| Msa0544580 | AT4G28610.1 | 46.067 | 89 | 44 | 3 | 168 | 254 | 225 | 311 | 5.97e-13 | 69.3 |
| Msa0544580 | AT5G18240.2 | 49.296 | 71 | 34 | 2 | 151 | 220 | 29 | 98 | 6.06e-13 | 69.3 |
| Msa0544580 | AT5G18240.3 | 49.296 | 71 | 34 | 2 | 151 | 220 | 29 | 98 | 6.06e-13 | 69.3 |
| Msa0544580 | AT5G18240.5 | 49.296 | 71 | 34 | 2 | 151 | 220 | 29 | 98 | 6.93e-13 | 68.9 |
| Msa0544580 | AT5G18240.1 | 49.296 | 71 | 34 | 2 | 151 | 220 | 29 | 98 | 6.97e-13 | 68.9 |
| Msa0544580 | AT5G18240.4 | 49.296 | 71 | 34 | 2 | 151 | 220 | 29 | 98 | 6.97e-13 | 68.9 |
| Msa0544580 | AT5G59570.2 | 43.056 | 72 | 38 | 1 | 149 | 220 | 125 | 193 | 2.33e-12 | 67.0 |
| Msa0544580 | AT5G59570.1 | 43.056 | 72 | 38 | 1 | 149 | 220 | 125 | 193 | 2.33e-12 | 67.0 |
| Msa0544580 | AT3G04450.1 | 44.737 | 76 | 35 | 2 | 168 | 242 | 238 | 307 | 2.48e-12 | 67.4 |
| Msa0544580 | AT3G04450.3 | 53.704 | 54 | 24 | 1 | 168 | 220 | 238 | 291 | 2.66e-12 | 66.6 |
| Msa0544580 | AT3G04030.2 | 52.830 | 53 | 25 | 0 | 168 | 220 | 45 | 97 | 2.78e-12 | 67.4 |
| Msa0544580 | AT5G60100.5 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.02e-12 | 67.4 |
| Msa0544580 | AT5G60100.3 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.02e-12 | 67.4 |
| Msa0544580 | AT5G60100.1 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.02e-12 | 67.4 |
| Msa0544580 | AT5G60100.2 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.04e-12 | 67.4 |
| Msa0544580 | AT5G60100.7 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.05e-12 | 67.0 |
| Msa0544580 | AT5G60100.6 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.05e-12 | 67.0 |
| Msa0544580 | AT5G60100.4 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.05e-12 | 67.0 |
| Msa0544580 | AT3G04450.4 | 44.737 | 76 | 35 | 2 | 168 | 242 | 198 | 267 | 3.34e-12 | 67.0 |
| Msa0544580 | AT3G04450.2 | 44.737 | 76 | 35 | 2 | 168 | 242 | 198 | 267 | 3.34e-12 | 67.0 |
| Msa0544580 | AT2G20570.1 | 48.276 | 58 | 30 | 0 | 167 | 224 | 152 | 209 | 4.32e-12 | 66.6 |
| Msa0544580 | AT1G69580.1 | 51.852 | 54 | 25 | 1 | 168 | 220 | 34 | 87 | 9.09e-12 | 65.5 |
| Msa0544580 | AT2G40970.1 | 50.000 | 54 | 27 | 0 | 167 | 220 | 104 | 157 | 9.13e-12 | 64.3 |
| Msa0544580 | AT1G69580.2 | 51.852 | 54 | 25 | 1 | 168 | 220 | 34 | 87 | 1.00e-11 | 65.5 |
| Msa0544580 | AT5G24470.1 | 27.778 | 126 | 81 | 3 | 13 | 131 | 49 | 171 | 1.09e-11 | 65.9 |
| Msa0544580 | AT5G05090.1 | 41.176 | 85 | 38 | 2 | 136 | 220 | 61 | 133 | 1.24e-11 | 64.3 |
| Msa0544580 | AT4G18020.8 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.45e-11 | 65.5 |
| Msa0544580 | AT4G18020.11 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.45e-11 | 65.5 |
| Msa0544580 | AT4G18020.4 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.45e-11 | 65.5 |
| Msa0544580 | AT4G18020.5 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.45e-11 | 65.5 |
| Msa0544580 | AT4G18020.10 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.45e-11 | 65.5 |
| Msa0544580 | AT4G18020.7 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.45e-11 | 65.5 |
| Msa0544580 | AT4G18020.3 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.70e-11 | 65.1 |
| Msa0544580 | AT4G18020.2 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.70e-11 | 65.1 |
| Msa0544580 | AT4G18020.1 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.70e-11 | 65.1 |
| Msa0544580 | AT4G18020.6 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.70e-11 | 65.1 |
| Msa0544580 | AT4G18020.9 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.70e-11 | 65.1 |
| Msa0544580 | AT3G10760.1 | 50.000 | 54 | 27 | 0 | 167 | 220 | 104 | 157 | 1.83e-11 | 64.3 |
| Msa0544580 | AT2G20570.2 | 49.091 | 55 | 28 | 0 | 170 | 224 | 171 | 225 | 3.03e-11 | 64.3 |
| Msa0544580 | AT3G46640.3 | 40.260 | 77 | 43 | 1 | 144 | 220 | 123 | 196 | 3.08e-11 | 63.9 |
| Msa0544580 | AT3G46640.2 | 48.148 | 54 | 28 | 0 | 167 | 220 | 143 | 196 | 3.33e-11 | 63.5 |
| Msa0544580 | AT3G46640.1 | 48.148 | 54 | 28 | 0 | 167 | 220 | 143 | 196 | 3.33e-11 | 63.5 |
| Msa0544580 | AT4G04605.1 | 37.624 | 101 | 51 | 3 | 166 | 264 | 12 | 102 | 4.66e-11 | 62.0 |
| Msa0544580 | AT5G06800.3 | 53.704 | 54 | 24 | 1 | 168 | 220 | 192 | 245 | 9.96e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGTTGCCAGCCATTTAC+AGG | 0.283862 | 4_1:-33414092 | Msa0544580:intron |
| GTGTAATCGATGCAATTATA+AGG | 0.312923 | 4_1:-33414914 | Msa0544580:CDS |
| ACATCTCCTCGACGAAATTA+AGG | 0.321564 | 4_1:+33414935 | None:intergenic |
| CAACAACATTGGGTGGAAAT+TGG | 0.345706 | 4_1:-33413428 | Msa0544580:CDS |
| TGAGTTGTAGGGTAACATTT+TGG | 0.373812 | 4_1:+33414674 | None:intergenic |
| GATAAATCATCATCAACATA+TGG | 0.380393 | 4_1:+33413356 | None:intergenic |
| AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4_1:-33414498 | Msa0544580:CDS |
| CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4_1:-33414485 | Msa0544580:CDS |
| ATCAGAAGCCATGCTACATT+TGG | 0.418312 | 4_1:+33414783 | None:intergenic |
| GTTTCAAGAAAATAGAAAAC+GGG | 0.418887 | 4_1:-33414374 | Msa0544580:CDS |
| CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4_1:+33414759 | None:intergenic |
| TGGCAACATGTTATAAGAAA+AGG | 0.422808 | 4_1:-33414439 | Msa0544580:CDS |
| TGATGGTTTGTCGGTGAAAA+GGG | 0.427097 | 4_1:+33415005 | None:intergenic |
| AAAAGTGTTGCTCATAATGT+TGG | 0.434928 | 4_1:+33413400 | None:intergenic |
| CAGAATTATGAAGAAAACTT+TGG | 0.439068 | 4_1:+33413480 | None:intergenic |
| TCAACATATGGGAACAAGTT+GGG | 0.453000 | 4_1:+33413368 | None:intergenic |
| ATGATGGTTTGTCGGTGAAA+AGG | 0.455733 | 4_1:+33415004 | None:intergenic |
| CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4_1:-33414758 | Msa0544580:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_1:+33414646 | None:intergenic |
| TTCTCGCGACCAAGACAAAC+GGG | 0.470376 | 4_1:+33414306 | None:intergenic |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.473177 | 4_1:-33414315 | Msa0544580:CDS |
| TGTAATCGATGCAATTATAA+GGG | 0.476930 | 4_1:-33414913 | Msa0544580:intron |
| TTGCGATGCACAACAACATT+GGG | 0.477561 | 4_1:-33413438 | Msa0544580:CDS |
| AAAAGAAACACATGCAAAGA+AGG | 0.478150 | 4_1:-33414329 | Msa0544580:CDS |
| TTGAGACCTTCTGATAATGA+TGG | 0.479264 | 4_1:+33414988 | None:intergenic |
| TACTCACTCAATACCGGAGC+AGG | 0.481604 | 4_1:-33413504 | Msa0544580:CDS |
| AAGTCATAAACATCCATGTC+TGG | 0.491105 | 4_1:+33414700 | None:intergenic |
| TTCTGATAATGATGGTTTGT+CGG | 0.493949 | 4_1:+33414996 | None:intergenic |
| ATATGAAATTGTTGGAAGCT+CGG | 0.504899 | 4_1:-33414398 | Msa0544580:CDS |
| TGTTTCAAGAAAATAGAAAA+CGG | 0.506234 | 4_1:-33414375 | Msa0544580:CDS |
| AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4_1:+33414245 | None:intergenic |
| ATTATGAAGTCTATTGAATG+TGG | 0.513075 | 4_1:-33414514 | Msa0544580:CDS |
| AAGCTAAATTGTGTTTCAAG+AGG | 0.513615 | 4_1:+33413533 | None:intergenic |
| AGAAAACTTTGGTCCTGCTC+CGG | 0.527471 | 4_1:+33413491 | None:intergenic |
| TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4_1:-33414767 | Msa0544580:CDS |
| TTATGAAGTCTATTGAATGT+GGG | 0.532174 | 4_1:-33414513 | Msa0544580:CDS |
| AAAACGAACCTGTAAATGGC+TGG | 0.537566 | 4_1:+33414084 | None:intergenic |
| TTCAGTTACCAAATGTAGCA+TGG | 0.538628 | 4_1:-33414791 | Msa0544580:intron |
| AGCTCAACCGATGAGACAAA+AGG | 0.540383 | 4_1:-33413581 | Msa0544580:CDS |
| ATTCTCGCGACCAAGACAAA+CGG | 0.543227 | 4_1:+33414305 | None:intergenic |
| CTACGTGCAGTCAATCAACT+AGG | 0.547867 | 4_1:-33414268 | Msa0544580:CDS |
| ATTGCGATGCACAACAACAT+TGG | 0.547991 | 4_1:-33413439 | Msa0544580:CDS |
| ATAAATCATCATCAACATAT+GGG | 0.548211 | 4_1:+33413357 | None:intergenic |
| ATCAACATATGGGAACAAGT+TGG | 0.552596 | 4_1:+33413367 | None:intergenic |
| AGAAGCTACTCACTCAATAC+CGG | 0.567403 | 4_1:-33413510 | Msa0544580:CDS |
| ATCATTATCAGAAGGTCTCA+AGG | 0.582734 | 4_1:-33414986 | Msa0544580:CDS |
| CGATGCACAACAACATTGGG+TGG | 0.592869 | 4_1:-33413435 | Msa0544580:CDS |
| AGAACTTTCTGCAGAATCAA+CGG | 0.593830 | 4_1:+33414537 | None:intergenic |
| TCTTATAACATGTTGCCACA+TGG | 0.594344 | 4_1:+33414444 | None:intergenic |
| TATGAAGTCTATTGAATGTG+GGG | 0.598969 | 4_1:-33414512 | Msa0544580:CDS |
| CACTCTCCTTAATTTCGTCG+AGG | 0.625060 | 4_1:-33414941 | Msa0544580:CDS |
| TGATGCTCATATGCCAGACA+TGG | 0.629107 | 4_1:-33414713 | Msa0544580:CDS |
| GACAAACCATCATTATCAGA+AGG | 0.636966 | 4_1:-33414994 | Msa0544580:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.696325 | 4_1:-33413343 | Msa0544580:CDS |
| TTTCAAGAAAATAGAAAACG+GGG | 0.722642 | 4_1:-33414373 | Msa0544580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGTAAATTGAAATTTA+TGG | - | chr4_1:33414679-33414698 | Msa0544580:CDS | 10.0% |
| !! | TTATTGTAAATTGAAATTTA+TGG | - | chr4_1:33414679-33414698 | Msa0544580:CDS | 10.0% |
| !! | AACAAAAAATATGAAATTGT+TGG | - | chr4_1:33413943-33413962 | Msa0544580:intron | 15.0% |
| !!! | ATAATTTTCAGAATCTTTTT+TGG | + | chr4_1:33414213-33414232 | None:intergenic | 15.0% |
| !!! | AAAAAAGATTCTGAAAATTA+TGG | - | chr4_1:33414212-33414231 | Msa0544580:intron | 15.0% |
| !! | AACAAAAAATATGAAATTGT+TGG | - | chr4_1:33413943-33413962 | Msa0544580:intron | 15.0% |
| !!! | ATAATTTTCAGAATCTTTTT+TGG | + | chr4_1:33414213-33414232 | None:intergenic | 15.0% |
| !!! | AAAAAAGATTCTGAAAATTA+TGG | - | chr4_1:33414212-33414231 | Msa0544580:intron | 15.0% |
| !! | AAAGATGAAAACTTTGAATA+AGG | + | chr4_1:33413479-33413498 | None:intergenic | 20.0% |
| !!! | TTCAAAGTTTTCATCTTTTT+TGG | - | chr4_1:33413481-33413500 | Msa0544580:CDS | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | chr4_1:33413706-33413725 | None:intergenic | 20.0% |
| !!! | TTATTTCTTTTTTGTAGTGA+TGG | - | chr4_1:33413789-33413808 | Msa0544580:intron | 20.0% |
| !! | TGTTTCAAGAAAATAGAAAA+CGG | - | chr4_1:33413974-33413993 | Msa0544580:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4_1:33414127-33414146 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTATTTTTC+AGG | - | chr4_1:33414180-33414199 | Msa0544580:intron | 20.0% |
| !!! | TGTTTTTCTCTTATTTTTCA+GGG | - | chr4_1:33414181-33414200 | Msa0544580:intron | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | + | chr4_1:33414244-33414263 | None:intergenic | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | + | chr4_1:33414995-33415014 | None:intergenic | 20.0% |
| !! | AAAGATGAAAACTTTGAATA+AGG | + | chr4_1:33413479-33413498 | None:intergenic | 20.0% |
| !!! | TTCAAAGTTTTCATCTTTTT+TGG | - | chr4_1:33413481-33413500 | Msa0544580:CDS | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | chr4_1:33413706-33413725 | None:intergenic | 20.0% |
| !!! | TTATTTCTTTTTTGTAGTGA+TGG | - | chr4_1:33413789-33413808 | Msa0544580:intron | 20.0% |
| !! | TGTTTCAAGAAAATAGAAAA+CGG | - | chr4_1:33413974-33413993 | Msa0544580:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4_1:33414127-33414146 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTATTTTTC+AGG | - | chr4_1:33414180-33414199 | Msa0544580:intron | 20.0% |
| !!! | TGTTTTTCTCTTATTTTTCA+GGG | - | chr4_1:33414181-33414200 | Msa0544580:intron | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | + | chr4_1:33414244-33414263 | None:intergenic | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | + | chr4_1:33414995-33415014 | None:intergenic | 20.0% |
| ! | TGTAATCGATGCAATTATAA+GGG | - | chr4_1:33413436-33413455 | Msa0544580:CDS | 25.0% |
| ! | ATTATGAAGTCTATTGAATG+TGG | - | chr4_1:33413835-33413854 | Msa0544580:intron | 25.0% |
| ! | TTATGAAGTCTATTGAATGT+GGG | - | chr4_1:33413836-33413855 | Msa0544580:intron | 25.0% |
| ! | GTTTCAAGAAAATAGAAAAC+GGG | - | chr4_1:33413975-33413994 | Msa0544580:intron | 25.0% |
| ! | TTTCAAGAAAATAGAAAACG+GGG | - | chr4_1:33413976-33413995 | Msa0544580:intron | 25.0% |
| !!! | GTTTTTCTCTTATTTTTCAG+GGG | - | chr4_1:33414182-33414201 | Msa0544580:intron | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | + | chr4_1:33414243-33414262 | None:intergenic | 25.0% |
| ! | ATGCATAAGCTATTAAATTC+AGG | + | chr4_1:33414500-33414519 | None:intergenic | 25.0% |
| ! | TAACAGCTAGAAAAAGAATT+TGG | + | chr4_1:33414534-33414553 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | + | chr4_1:33414643-33414662 | None:intergenic | 25.0% |
| ! | CAGAATTATGAAGAAAACTT+TGG | + | chr4_1:33414872-33414891 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | + | chr4_1:33414996-33415015 | None:intergenic | 25.0% |
| ! | TGTAATCGATGCAATTATAA+GGG | - | chr4_1:33413436-33413455 | Msa0544580:CDS | 25.0% |
| ! | ATTATGAAGTCTATTGAATG+TGG | - | chr4_1:33413835-33413854 | Msa0544580:intron | 25.0% |
| ! | TTATGAAGTCTATTGAATGT+GGG | - | chr4_1:33413836-33413855 | Msa0544580:intron | 25.0% |
| ! | GTTTCAAGAAAATAGAAAAC+GGG | - | chr4_1:33413975-33413994 | Msa0544580:intron | 25.0% |
| ! | TTTCAAGAAAATAGAAAACG+GGG | - | chr4_1:33413976-33413995 | Msa0544580:intron | 25.0% |
| !!! | GTTTTTCTCTTATTTTTCAG+GGG | - | chr4_1:33414182-33414201 | Msa0544580:intron | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | + | chr4_1:33414243-33414262 | None:intergenic | 25.0% |
| ! | ATGCATAAGCTATTAAATTC+AGG | + | chr4_1:33414500-33414519 | None:intergenic | 25.0% |
| ! | TAACAGCTAGAAAAAGAATT+TGG | + | chr4_1:33414534-33414553 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | + | chr4_1:33414643-33414662 | None:intergenic | 25.0% |
| ! | CAGAATTATGAAGAAAACTT+TGG | + | chr4_1:33414872-33414891 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | + | chr4_1:33414996-33415015 | None:intergenic | 25.0% |
| ! | TTCTGATAATGATGGTTTGT+CGG | + | chr4_1:33413356-33413375 | None:intergenic | 30.0% |
| GTGTAATCGATGCAATTATA+AGG | - | chr4_1:33413435-33413454 | Msa0544580:CDS | 30.0% | |
| TATGAAGTCTATTGAATGTG+GGG | - | chr4_1:33413837-33413856 | Msa0544580:intron | 30.0% | |
| !! | TTGAACTGTTTTTCAACCAA+AGG | + | chr4_1:33413883-33413902 | None:intergenic | 30.0% |
| TGGCAACATGTTATAAGAAA+AGG | - | chr4_1:33413910-33413929 | Msa0544580:intron | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | - | chr4_1:33413951-33413970 | Msa0544580:intron | 30.0% | |
| AAAAGAAACACATGCAAAGA+AGG | - | chr4_1:33414020-33414039 | Msa0544580:intron | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | chr4_1:33414107-33414126 | None:intergenic | 30.0% | |
| TACAAAAACGAACCTGTAAA+TGG | + | chr4_1:33414272-33414291 | None:intergenic | 30.0% | |
| AGAATTACAACAACAGACTT+AGG | + | chr4_1:33414369-33414388 | None:intergenic | 30.0% | |
| TTGTATAACATGCAAGACTA+AGG | + | chr4_1:33414415-33414434 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+CGG | + | chr4_1:33414625-33414644 | None:intergenic | 30.0% | |
| AAGCTAAATTGTGTTTCAAG+AGG | + | chr4_1:33414819-33414838 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | + | chr4_1:33414952-33414971 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | - | chr4_1:33415006-33415025 | Msa0544580:CDS | 30.0% | |
| ! | TTCTGATAATGATGGTTTGT+CGG | + | chr4_1:33413356-33413375 | None:intergenic | 30.0% |
| GTGTAATCGATGCAATTATA+AGG | - | chr4_1:33413435-33413454 | Msa0544580:CDS | 30.0% | |
| TATGAAGTCTATTGAATGTG+GGG | - | chr4_1:33413837-33413856 | Msa0544580:intron | 30.0% | |
| !! | TTGAACTGTTTTTCAACCAA+AGG | + | chr4_1:33413883-33413902 | None:intergenic | 30.0% |
| TGGCAACATGTTATAAGAAA+AGG | - | chr4_1:33413910-33413929 | Msa0544580:intron | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | - | chr4_1:33413951-33413970 | Msa0544580:intron | 30.0% | |
| AAAAGAAACACATGCAAAGA+AGG | - | chr4_1:33414020-33414039 | Msa0544580:intron | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | chr4_1:33414107-33414126 | None:intergenic | 30.0% | |
| TACAAAAACGAACCTGTAAA+TGG | + | chr4_1:33414272-33414291 | None:intergenic | 30.0% | |
| AGAATTACAACAACAGACTT+AGG | + | chr4_1:33414369-33414388 | None:intergenic | 30.0% | |
| TTGTATAACATGCAAGACTA+AGG | + | chr4_1:33414415-33414434 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+CGG | + | chr4_1:33414625-33414644 | None:intergenic | 30.0% | |
| AAGCTAAATTGTGTTTCAAG+AGG | + | chr4_1:33414819-33414838 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | + | chr4_1:33414952-33414971 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | - | chr4_1:33415006-33415025 | Msa0544580:CDS | 30.0% | |
| GACAAACCATCATTATCAGA+AGG | - | chr4_1:33413355-33413374 | Msa0544580:CDS | 35.0% | |
| ! | TTGAGACCTTCTGATAATGA+TGG | + | chr4_1:33413364-33413383 | None:intergenic | 35.0% |
| ATCATTATCAGAAGGTCTCA+AGG | - | chr4_1:33413363-33413382 | Msa0544580:CDS | 35.0% | |
| TTCAGTTACCAAATGTAGCA+TGG | - | chr4_1:33413558-33413577 | Msa0544580:CDS | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | + | chr4_1:33413593-33413612 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | - | chr4_1:33413591-33413610 | Msa0544580:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | + | chr4_1:33413652-33413671 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_1:33413678-33413697 | None:intergenic | 35.0% |
| !!! | GACAGGAATTTTGAGTTGTA+GGG | + | chr4_1:33413689-33413708 | None:intergenic | 35.0% |
| !!! | TGACAGGAATTTTGAGTTGT+AGG | + | chr4_1:33413690-33413709 | None:intergenic | 35.0% |
| AGAACTTTCTGCAGAATCAA+CGG | + | chr4_1:33413815-33413834 | None:intergenic | 35.0% | |
| AAAAACAGTTCAAGACCATG+TGG | - | chr4_1:33413890-33413909 | Msa0544580:intron | 35.0% | |
| TCTTATAACATGTTGCCACA+TGG | + | chr4_1:33413908-33413927 | None:intergenic | 35.0% | |
| ! | CTTTGCATGTGTTTCTTTTG+AGG | + | chr4_1:33414019-33414038 | None:intergenic | 35.0% |
| AAAAGATCACTGACAAACCT+AGG | + | chr4_1:33414345-33414364 | None:intergenic | 35.0% | |
| ! | CATCTTACCTTTTGTCTCAT+CGG | + | chr4_1:33414778-33414797 | None:intergenic | 35.0% |
| TCAACATATGGGAACAAGTT+GGG | + | chr4_1:33414984-33415003 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | + | chr4_1:33414985-33415004 | None:intergenic | 35.0% | |
| GACAAACCATCATTATCAGA+AGG | - | chr4_1:33413355-33413374 | Msa0544580:CDS | 35.0% | |
| ! | TTGAGACCTTCTGATAATGA+TGG | + | chr4_1:33413364-33413383 | None:intergenic | 35.0% |
| ATCATTATCAGAAGGTCTCA+AGG | - | chr4_1:33413363-33413382 | Msa0544580:CDS | 35.0% | |
| TTCAGTTACCAAATGTAGCA+TGG | - | chr4_1:33413558-33413577 | Msa0544580:CDS | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | + | chr4_1:33413593-33413612 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | - | chr4_1:33413591-33413610 | Msa0544580:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | + | chr4_1:33413652-33413671 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_1:33413678-33413697 | None:intergenic | 35.0% |
| !!! | GACAGGAATTTTGAGTTGTA+GGG | + | chr4_1:33413689-33413708 | None:intergenic | 35.0% |
| !!! | TGACAGGAATTTTGAGTTGT+AGG | + | chr4_1:33413690-33413709 | None:intergenic | 35.0% |
| AGAACTTTCTGCAGAATCAA+CGG | + | chr4_1:33413815-33413834 | None:intergenic | 35.0% | |
| AAAAACAGTTCAAGACCATG+TGG | - | chr4_1:33413890-33413909 | Msa0544580:intron | 35.0% | |
| TCTTATAACATGTTGCCACA+TGG | + | chr4_1:33413908-33413927 | None:intergenic | 35.0% | |
| ! | CTTTGCATGTGTTTCTTTTG+AGG | + | chr4_1:33414019-33414038 | None:intergenic | 35.0% |
| AAAAGATCACTGACAAACCT+AGG | + | chr4_1:33414345-33414364 | None:intergenic | 35.0% | |
| ! | CATCTTACCTTTTGTCTCAT+CGG | + | chr4_1:33414778-33414797 | None:intergenic | 35.0% |
| TCAACATATGGGAACAAGTT+GGG | + | chr4_1:33414984-33415003 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | + | chr4_1:33414985-33415004 | None:intergenic | 35.0% | |
| ! | TGATGGTTTGTCGGTGAAAA+GGG | + | chr4_1:33413347-33413366 | None:intergenic | 40.0% |
| ! | ATGATGGTTTGTCGGTGAAA+AGG | + | chr4_1:33413348-33413367 | None:intergenic | 40.0% |
| ACATCTCCTCGACGAAATTA+AGG | + | chr4_1:33413417-33413436 | None:intergenic | 40.0% | |
| ATCAGAAGCCATGCTACATT+TGG | + | chr4_1:33413569-33413588 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | - | chr4_1:33413582-33413601 | Msa0544580:CDS | 40.0% | |
| CGAATATTGGACTAAGCCTT+TGG | - | chr4_1:33413864-33413883 | Msa0544580:intron | 40.0% | |
| AAAACGAACCTGTAAATGGC+TGG | + | chr4_1:33414268-33414287 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | + | chr4_1:33414331-33414350 | None:intergenic | 40.0% | |
| GAGTAGCTTCAGCTACTTAT+AGG | - | chr4_1:33414455-33414474 | Msa0544580:CDS | 40.0% | |
| CAGGTTCGTTTCATTTACAC+CGG | + | chr4_1:33414481-33414500 | None:intergenic | 40.0% | |
| AGAAGCTACTCACTCAATAC+CGG | - | chr4_1:33414839-33414858 | Msa0544580:intron | 40.0% | |
| ATTGCGATGCACAACAACAT+TGG | - | chr4_1:33414910-33414929 | Msa0544580:intron | 40.0% | |
| TTGCGATGCACAACAACATT+GGG | - | chr4_1:33414911-33414930 | Msa0544580:intron | 40.0% | |
| CAACAACATTGGGTGGAAAT+TGG | - | chr4_1:33414921-33414940 | Msa0544580:CDS | 40.0% | |
| ! | TGATGGTTTGTCGGTGAAAA+GGG | + | chr4_1:33413347-33413366 | None:intergenic | 40.0% |
| ! | ATGATGGTTTGTCGGTGAAA+AGG | + | chr4_1:33413348-33413367 | None:intergenic | 40.0% |
| ACATCTCCTCGACGAAATTA+AGG | + | chr4_1:33413417-33413436 | None:intergenic | 40.0% | |
| ATCAGAAGCCATGCTACATT+TGG | + | chr4_1:33413569-33413588 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | - | chr4_1:33413582-33413601 | Msa0544580:CDS | 40.0% | |
| CGAATATTGGACTAAGCCTT+TGG | - | chr4_1:33413864-33413883 | Msa0544580:intron | 40.0% | |
| AAAACGAACCTGTAAATGGC+TGG | + | chr4_1:33414268-33414287 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | + | chr4_1:33414331-33414350 | None:intergenic | 40.0% | |
| GAGTAGCTTCAGCTACTTAT+AGG | - | chr4_1:33414455-33414474 | Msa0544580:CDS | 40.0% | |
| CAGGTTCGTTTCATTTACAC+CGG | + | chr4_1:33414481-33414500 | None:intergenic | 40.0% | |
| AGAAGCTACTCACTCAATAC+CGG | - | chr4_1:33414839-33414858 | Msa0544580:intron | 40.0% | |
| ATTGCGATGCACAACAACAT+TGG | - | chr4_1:33414910-33414929 | Msa0544580:intron | 40.0% | |
| TTGCGATGCACAACAACATT+GGG | - | chr4_1:33414911-33414930 | Msa0544580:intron | 40.0% | |
| CAACAACATTGGGTGGAAAT+TGG | - | chr4_1:33414921-33414940 | Msa0544580:CDS | 40.0% | |
| CACTCTCCTTAATTTCGTCG+AGG | - | chr4_1:33413408-33413427 | Msa0544580:CDS | 45.0% | |
| TGATGCTCATATGCCAGACA+TGG | - | chr4_1:33413636-33413655 | Msa0544580:intron | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | - | chr4_1:33413851-33413870 | Msa0544580:intron | 45.0% | |
| ATTCTCGCGACCAAGACAAA+CGG | + | chr4_1:33414047-33414066 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | - | chr4_1:33414081-33414100 | Msa0544580:intron | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | - | chr4_1:33414257-33414276 | Msa0544580:intron | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | - | chr4_1:33414325-33414344 | Msa0544580:CDS | 45.0% | |
| AGCTTCAGCTACTTATAGGC+CGG | - | chr4_1:33414459-33414478 | Msa0544580:CDS | 45.0% | |
| AGCTCAACCGATGAGACAAA+AGG | - | chr4_1:33414768-33414787 | Msa0544580:CDS | 45.0% | |
| AGAAAACTTTGGTCCTGCTC+CGG | + | chr4_1:33414861-33414880 | None:intergenic | 45.0% | |
| CACTCTCCTTAATTTCGTCG+AGG | - | chr4_1:33413408-33413427 | Msa0544580:CDS | 45.0% | |
| TGATGCTCATATGCCAGACA+TGG | - | chr4_1:33413636-33413655 | Msa0544580:intron | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | - | chr4_1:33413851-33413870 | Msa0544580:intron | 45.0% | |
| ATTCTCGCGACCAAGACAAA+CGG | + | chr4_1:33414047-33414066 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | - | chr4_1:33414081-33414100 | Msa0544580:intron | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | - | chr4_1:33414257-33414276 | Msa0544580:intron | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | - | chr4_1:33414325-33414344 | Msa0544580:CDS | 45.0% | |
| AGCTTCAGCTACTTATAGGC+CGG | - | chr4_1:33414459-33414478 | Msa0544580:CDS | 45.0% | |
| AGCTCAACCGATGAGACAAA+AGG | - | chr4_1:33414768-33414787 | Msa0544580:CDS | 45.0% | |
| AGAAAACTTTGGTCCTGCTC+CGG | + | chr4_1:33414861-33414880 | None:intergenic | 45.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_1:33414034-33414053 | Msa0544580:intron | 50.0% | |
| TTCTCGCGACCAAGACAAAC+GGG | + | chr4_1:33414046-33414065 | None:intergenic | 50.0% | |
| TACTCACTCAATACCGGAGC+AGG | - | chr4_1:33414845-33414864 | Msa0544580:intron | 50.0% | |
| CGATGCACAACAACATTGGG+TGG | - | chr4_1:33414914-33414933 | Msa0544580:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_1:33414034-33414053 | Msa0544580:intron | 50.0% | |
| TTCTCGCGACCAAGACAAAC+GGG | + | chr4_1:33414046-33414065 | None:intergenic | 50.0% | |
| TACTCACTCAATACCGGAGC+AGG | - | chr4_1:33414845-33414864 | Msa0544580:intron | 50.0% | |
| CGATGCACAACAACATTGGG+TGG | - | chr4_1:33414914-33414933 | Msa0544580:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 33413340 | 33415031 | 33413340 | ID=Msa0544580;Name=Msa0544580 |
| chr4_1 | mRNA | 33413340 | 33415031 | 33413340 | ID=Msa0544580-mRNA-1;Parent=Msa0544580;Name=Msa0544580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|311 |
| chr4_1 | exon | 33414914 | 33415031 | 33414914 | ID=Msa0544580-mRNA-1:exon:8553;Parent=Msa0544580-mRNA-1 |
| chr4_1 | exon | 33414659 | 33414808 | 33414659 | ID=Msa0544580-mRNA-1:exon:8552;Parent=Msa0544580-mRNA-1 |
| chr4_1 | exon | 33414260 | 33414565 | 33414260 | ID=Msa0544580-mRNA-1:exon:8551;Parent=Msa0544580-mRNA-1 |
| chr4_1 | exon | 33414093 | 33414169 | 33414093 | ID=Msa0544580-mRNA-1:exon:8550;Parent=Msa0544580-mRNA-1 |
| chr4_1 | exon | 33413340 | 33413624 | 33413340 | ID=Msa0544580-mRNA-1:exon:8549;Parent=Msa0544580-mRNA-1 |
| chr4_1 | CDS | 33414914 | 33415031 | 33414914 | ID=Msa0544580-mRNA-1:cds;Parent=Msa0544580-mRNA-1 |
| chr4_1 | CDS | 33414659 | 33414808 | 33414659 | ID=Msa0544580-mRNA-1:cds;Parent=Msa0544580-mRNA-1 |
| chr4_1 | CDS | 33414260 | 33414565 | 33414260 | ID=Msa0544580-mRNA-1:cds;Parent=Msa0544580-mRNA-1 |
| chr4_1 | CDS | 33414093 | 33414169 | 33414093 | ID=Msa0544580-mRNA-1:cds;Parent=Msa0544580-mRNA-1 |
| chr4_1 | CDS | 33413340 | 33413624 | 33413340 | ID=Msa0544580-mRNA-1:cds;Parent=Msa0544580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
