AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544670 MtrunA17_Chr4g0040391 94.637 317 9 2 1 309 1 317 0.0 615
Msa0544670 MtrunA17_Chr2g0324781 51.408 284 71 9 14 238 21 296 1.09e-77 243
Msa0544670 MtrunA17_Chr8g0389561 51.813 193 84 4 50 237 75 263 3.39e-63 204
Msa0544670 MtrunA17_Chr6g0487481 60.417 144 57 0 16 159 63 206 3.91e-63 204
Msa0544670 MtrunA17_Chr3g0135351 55.280 161 51 3 52 211 49 189 1.04e-56 184
Msa0544670 MtrunA17_Chr7g0257831 63.333 120 44 0 52 171 260 379 3.40e-54 188
Msa0544670 MtrunA17_Chr3g0088521 49.708 171 76 4 52 217 260 425 5.15e-52 182
Msa0544670 MtrunA17_Chr5g0437251 50.299 167 77 1 52 218 213 373 4.59e-49 173
Msa0544670 MtrunA17_Chr1g0171151 57.500 120 49 1 52 171 240 357 1.39e-47 168
Msa0544670 MtrunA17_Chr5g0430211 55.000 120 54 0 52 171 226 345 5.96e-47 167
Msa0544670 MtrunA17_Chr3g0092221 55.000 120 54 0 52 171 154 273 3.49e-46 160
Msa0544670 MtrunA17_Chr1g0187591 54.167 120 55 0 52 171 225 344 4.65e-45 162
Msa0544670 MtrunA17_Chr3g0113651 42.775 173 89 2 8 170 105 277 8.99e-45 159
Msa0544670 MtrunA17_Chr3g0105141 54.464 112 50 1 50 160 30 141 2.25e-42 144
Msa0544670 MtrunA17_Chr3g0092171 42.373 177 93 3 52 227 271 439 1.66e-41 150
Msa0544670 MtrunA17_Chr3g0105121 40.719 167 87 3 49 212 2 159 6.01e-36 132
Msa0544670 MtrunA17_Chr3g0105131 49.541 109 41 1 52 160 176 270 5.82e-31 121
Msa0544670 MtrunA17_Chr3g0105101 49.474 95 48 0 87 181 195 289 3.38e-29 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544670 AT1G03790.1 56.838 234 58 8 49 250 75 297 1.18e-77 242
Msa0544670 AT5G44260.1 57.789 199 48 5 25 195 17 207 1.10e-68 219
Msa0544670 AT4G29190.1 48.148 216 90 5 29 240 49 246 9.76e-62 200
Msa0544670 AT2G19810.1 72.973 111 30 0 50 160 72 182 1.70e-61 199
Msa0544670 AT2G25900.2 74.775 111 28 0 50 160 84 194 1.89e-61 198
Msa0544670 AT2G25900.1 74.775 111 28 0 50 160 84 194 1.89e-61 198
Msa0544670 AT2G41900.1 60.833 120 47 0 52 171 257 376 2.33e-52 183
Msa0544670 AT5G07500.1 40.278 216 107 3 48 258 44 242 4.82e-51 169
Msa0544670 AT5G58620.1 59.167 120 49 0 52 171 205 324 4.44e-50 175
Msa0544670 AT5G12850.1 47.879 165 80 2 52 215 253 412 2.44e-49 174
Msa0544670 AT2G40140.2 42.077 183 97 2 30 212 190 363 2.74e-45 162
Msa0544670 AT2G40140.1 42.077 183 97 2 30 212 190 363 2.74e-45 162
Msa0544670 AT3G55980.1 40.526 190 85 4 32 215 189 356 5.82e-45 161
Msa0544670 AT3G55980.2 40.526 190 85 4 32 215 256 423 1.75e-44 160

Find 82 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGATGTCACACCAGATTT+TGG 0.197364 4_1:+33547901 Msa0544670:CDS
CCACAACCCAATGAAGAATT+AGG 0.197865 4_1:-33547805 None:intergenic
GAGAGATGAACAAAGGATTA+AGG 0.262097 4_1:+33547870 Msa0544670:CDS
TAATGAGCTTATTCGTTCTA+TGG 0.266931 4_1:+33547690 Msa0544670:CDS
CACATCTTTGGAATTTGAAT+TGG 0.278211 4_1:-33547659 None:intergenic
ATTAGTAATCCAATTCAATT+TGG 0.280023 4_1:-33547770 None:intergenic
CAATAATCCTAATTCTTCAT+TGG 0.296388 4_1:+33547798 Msa0544670:CDS
ATTAAGCACATGCACATCTT+TGG 0.304309 4_1:-33547671 None:intergenic
TTTCTGCTTCCAAATTGAAT+TGG 0.317850 4_1:+33547761 Msa0544670:CDS
CGGAAATGGTCGGAGGAATA+AGG 0.321371 4_1:-33547169 None:intergenic
AGGTGTAGGAGAAGGAGAAA+GGG 0.351736 4_1:-33547509 None:intergenic
GTCAGTGACGGCCGTGGAGG+TGG 0.351966 4_1:-33547128 None:intergenic
TCCAGTCGTGGCTCCGGCTA+CGG 0.353618 4_1:-33547222 None:intergenic
CAGTTTCCGCGGCGGTAATC+AGG 0.356290 4_1:-33547325 None:intergenic
TTCAATTTGGAAGCAGAAAC+AGG 0.360306 4_1:-33547757 None:intergenic
AATAATCCTAATTCTTCATT+GGG 0.373307 4_1:+33547799 Msa0544670:CDS
GAGGTGTAGGAGAAGGAGAA+AGG 0.381509 4_1:-33547510 None:intergenic
AATGCTGGTTGCACCCTTCA+AGG 0.396871 4_1:+33547389 Msa0544670:CDS
TGACTGCCCTTTCGCCCACC+CGG 0.414504 4_1:+33547246 Msa0544670:CDS
TGAACTCGTACATTCGGAAA+TGG 0.414832 4_1:-33547183 None:intergenic
CCAGTCGTGGCTCCGGCTAC+GGG 0.415412 4_1:-33547221 None:intergenic
TCATTCACCCACCCAAAATC+TGG 0.421911 4_1:-33547913 None:intergenic
CGTGGAGGTGGGTGAGCGGC+GGG 0.431926 4_1:-33547116 None:intergenic
CCTAATTCTTCATTGGGTTG+TGG 0.435345 4_1:+33547805 Msa0544670:CDS
CCCACTTCTACTTTGTTAAG+TGG 0.437563 4_1:+33547592 Msa0544670:CDS
CGGCGGGTGAGTAGCTTCCT+TGG 0.441619 4_1:-33547100 None:intergenic
GCTTCAGTTCTATACCTTGA+AGG 0.441697 4_1:-33547403 None:intergenic
GACTGCCCTTTCGCCCACCC+GGG 0.448196 4_1:+33547247 Msa0544670:CDS
TCCGGCTACGGGTGCATCGC+CGG 0.451200 4_1:-33547210 None:intergenic
CCCGTAGCCGGAGCCACGAC+TGG 0.463023 4_1:+33547221 Msa0544670:CDS
CGCCGCGTTCGCAGTTTCCG+CGG 0.466468 4_1:-33547336 None:intergenic
CCGTGGAGGTGGGTGAGCGG+CGG 0.479752 4_1:-33547117 None:intergenic
ACTGCCCTTTCGCCCACCCG+GGG 0.491487 4_1:+33547248 Msa0544670:CDS
CCACTTCTACTTTGTTAAGT+GGG 0.493579 4_1:+33547593 Msa0544670:CDS
AGTCAGTCCAGTCGTGGCTC+CGG 0.493879 4_1:-33547228 None:intergenic
AGAACTGAAGCTTGTAAAGA+TGG 0.494694 4_1:+33547415 Msa0544670:CDS
GGTGTAGGAGAAGGAGAAAG+GGG 0.497014 4_1:-33547508 None:intergenic
AATTGGACAAAGGTGACAAA+GGG 0.502505 4_1:-33547642 None:intergenic
TCCGGCGATGCACCCGTAGC+CGG 0.506464 4_1:+33547209 Msa0544670:CDS
CGCCGCGGAAACTGCGAACG+CGG 0.510281 4_1:+33547334 Msa0544670:CDS
TATTATAATTCAAGTGGTGG+TGG 0.521610 4_1:+33547832 Msa0544670:CDS
TATAATTCAAGTGGTGGTGG+TGG 0.522552 4_1:+33547835 Msa0544670:CDS
CTTCAGTTCTATACCTTGAA+GGG 0.525702 4_1:-33547402 None:intergenic
GGGTGAGTAGCTTCCTTGGT+GGG 0.529896 4_1:-33547096 None:intergenic
CGGGTGAGTAGCTTCCTTGG+TGG 0.538038 4_1:-33547097 None:intergenic
TCAGTGACGGCCGTGGAGGT+GGG 0.541805 4_1:-33547127 None:intergenic
AAGCCTGTGAATTCTCCCAC+GGG 0.550657 4_1:+33547359 Msa0544670:CDS
AAACATGTCAGTGACGGCCG+TGG 0.552764 4_1:-33547134 None:intergenic
GGAAAATATTATAATTCAAG+TGG 0.553872 4_1:+33547826 Msa0544670:CDS
TTGGAATTTGAATTGGACAA+AGG 0.558737 4_1:-33547652 None:intergenic
AACCCCGTGGGAGAATTCAC+AGG 0.568943 4_1:-33547362 None:intergenic
CGGCCGTGGAGGTGGGTGAG+CGG 0.570782 4_1:-33547120 None:intergenic
GAAGCCTGTGAATTCTCCCA+CGG 0.574666 4_1:+33547358 Msa0544670:CDS
GAATTGGACAAAGGTGACAA+AGG 0.576387 4_1:-33547643 None:intergenic
GAATGTACGAGTTCAAAATC+CGG 0.577680 4_1:+33547191 Msa0544670:CDS
ACCGGAGTACTGATATCTGA+GGG 0.579137 4_1:-33547293 None:intergenic
CCCACTTAACAAAGTAGAAG+TGG 0.579402 4_1:-33547593 None:intergenic
CCGCCGCTCACCCACCTCCA+CGG 0.583656 4_1:+33547117 Msa0544670:CDS
AAATATTATAATTCAAGTGG+TGG 0.584829 4_1:+33547829 Msa0544670:CDS
CTCGTACATTCGGAAATGGT+CGG 0.594163 4_1:-33547179 None:intergenic
CGCGTTCGCAGTTTCCGCGG+CGG 0.608889 4_1:-33547333 None:intergenic
CCCCTCAGATATCAGTACTC+CGG 0.612677 4_1:+33547292 Msa0544670:CDS
AAGGGCAGTCAGTCCAGTCG+TGG 0.612908 4_1:-33547234 None:intergenic
TGGTGATGATATTGTTCATG+AGG 0.613976 4_1:+33547726 Msa0544670:CDS
CATGTCAGTGACGGCCGTGG+AGG 0.615263 4_1:-33547131 None:intergenic
ATCGGAAAACATGTCAGTGA+CGG 0.625042 4_1:-33547140 None:intergenic
GTAGGAGAAGGAGAAAGGGG+TGG 0.626978 4_1:-33547505 None:intergenic
GTAATCAGGACACACCTCAC+CGG 0.640259 4_1:-33547311 None:intergenic
CTGCCCTTTCGCCCACCCGG+GGG 0.643177 4_1:+33547249 Msa0544670:CDS
CACCGGAGTACTGATATCTG+AGG 0.653509 4_1:-33547294 None:intergenic
CCACTTAACAAAGTAGAAGT+GGG 0.659131 4_1:-33547592 None:intergenic
AGCAAAACTCTAAGTTGACG+AGG 0.664102 4_1:-33547478 None:intergenic
GGAGGAATAAGGATCCTCAT+CGG 0.669248 4_1:-33547158 None:intergenic
GTACATTCGGAAATGGTCGG+AGG 0.686456 4_1:-33547176 None:intergenic
CGGAGTACTGATATCTGAGG+GGG 0.692681 4_1:-33547291 None:intergenic
GTGTGTCCTGATTACCGCCG+CGG 0.700292 4_1:+33547319 Msa0544670:CDS
TTGGACAAAGGTGACAAAGG+GGG 0.709302 4_1:-33547640 None:intergenic
CAGATATCAGTACTCCGGTG+AGG 0.711287 4_1:+33547297 Msa0544670:CDS
CCGGAGTACTGATATCTGAG+GGG 0.714208 4_1:-33547292 None:intergenic
ATTGGACAAAGGTGACAAAG+GGG 0.724475 4_1:-33547641 None:intergenic
TCATGGACAACATCCCACCA+AGG 0.735832 4_1:+33547083 Msa0544670:CDS
AGCCTGTGAATTCTCCCACG+GGG 0.745486 4_1:+33547360 Msa0544670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTTGTTGTTTTTTTG+AGG - chr4_1:33547535-33547554 None:intergenic 20.0%
!! TGAATTTGAAGAAGAAAAAT+GGG - chr4_1:33547620-33547639 None:intergenic 20.0%
!! ATTAGTAATCCAATTCAATT+TGG - chr4_1:33547773-33547792 None:intergenic 20.0%
!! AATAATCCTAATTCTTCATT+GGG + chr4_1:33547799-33547818 Msa0544670:CDS 20.0%
!! GGAAAATATTATAATTCAAG+TGG + chr4_1:33547826-33547845 Msa0544670:CDS 20.0%
!! AAATATTATAATTCAAGTGG+TGG + chr4_1:33547829-33547848 Msa0544670:CDS 20.0%
!!! CATTTTTTGTTGTTTTTTTG+AGG - chr4_1:33547535-33547554 None:intergenic 20.0%
!! TGAATTTGAAGAAGAAAAAT+GGG - chr4_1:33547620-33547639 None:intergenic 20.0%
!! ATTAGTAATCCAATTCAATT+TGG - chr4_1:33547773-33547792 None:intergenic 20.0%
!! AATAATCCTAATTCTTCATT+GGG + chr4_1:33547799-33547818 Msa0544670:CDS 20.0%
!! GGAAAATATTATAATTCAAG+TGG + chr4_1:33547826-33547845 Msa0544670:CDS 20.0%
!! AAATATTATAATTCAAGTGG+TGG + chr4_1:33547829-33547848 Msa0544670:CDS 20.0%
!!! TTTTTGTTGTTTTTTTGAGG+AGG - chr4_1:33547532-33547551 None:intergenic 25.0%
! GAATTTGAAGAAGAAAAATG+GGG - chr4_1:33547619-33547638 None:intergenic 25.0%
! GTGAATTTGAAGAAGAAAAA+TGG - chr4_1:33547621-33547640 None:intergenic 25.0%
! CAATAATCCTAATTCTTCAT+TGG + chr4_1:33547798-33547817 Msa0544670:CDS 25.0%
!!! TTTTTGTTGTTTTTTTGAGG+AGG - chr4_1:33547532-33547551 None:intergenic 25.0%
! GAATTTGAAGAAGAAAAATG+GGG - chr4_1:33547619-33547638 None:intergenic 25.0%
! GTGAATTTGAAGAAGAAAAA+TGG - chr4_1:33547621-33547640 None:intergenic 25.0%
! CAATAATCCTAATTCTTCAT+TGG + chr4_1:33547798-33547817 Msa0544670:CDS 25.0%
TTGGAATTTGAATTGGACAA+AGG - chr4_1:33547655-33547674 None:intergenic 30.0%
!! CACATCTTTGGAATTTGAAT+TGG - chr4_1:33547662-33547681 None:intergenic 30.0%
TAATGAGCTTATTCGTTCTA+TGG + chr4_1:33547690-33547709 Msa0544670:CDS 30.0%
!!! TCTATGGAGAGTTTTAACTT+TGG + chr4_1:33547706-33547725 Msa0544670:CDS 30.0%
TTTCTGCTTCCAAATTGAAT+TGG + chr4_1:33547761-33547780 Msa0544670:CDS 30.0%
TATTATAATTCAAGTGGTGG+TGG + chr4_1:33547832-33547851 Msa0544670:CDS 30.0%
!! TGTTTTTGAGAGATGAACAA+AGG + chr4_1:33547863-33547882 Msa0544670:CDS 30.0%
TTGGAATTTGAATTGGACAA+AGG - chr4_1:33547655-33547674 None:intergenic 30.0%
!! CACATCTTTGGAATTTGAAT+TGG - chr4_1:33547662-33547681 None:intergenic 30.0%
TAATGAGCTTATTCGTTCTA+TGG + chr4_1:33547690-33547709 Msa0544670:CDS 30.0%
!!! TCTATGGAGAGTTTTAACTT+TGG + chr4_1:33547706-33547725 Msa0544670:CDS 30.0%
TTTCTGCTTCCAAATTGAAT+TGG + chr4_1:33547761-33547780 Msa0544670:CDS 30.0%
TATTATAATTCAAGTGGTGG+TGG + chr4_1:33547832-33547851 Msa0544670:CDS 30.0%
!! TGTTTTTGAGAGATGAACAA+AGG + chr4_1:33547863-33547882 Msa0544670:CDS 30.0%
! GGATTTTGAACTCGTACATT+CGG - chr4_1:33547192-33547211 None:intergenic 35.0%
GAATGTACGAGTTCAAAATC+CGG + chr4_1:33547191-33547210 Msa0544670:CDS 35.0%
CTTCAGTTCTATACCTTGAA+GGG - chr4_1:33547405-33547424 None:intergenic 35.0%
AGAACTGAAGCTTGTAAAGA+TGG + chr4_1:33547415-33547434 Msa0544670:CDS 35.0%
!!! TTGTTTTTTTGAGGAGGTGT+AGG - chr4_1:33547526-33547545 None:intergenic 35.0%
CCACTTAACAAAGTAGAAGT+GGG - chr4_1:33547595-33547614 None:intergenic 35.0%
CCACTTCTACTTTGTTAAGT+GGG + chr4_1:33547593-33547612 Msa0544670:CDS 35.0%
AATTGGACAAAGGTGACAAA+GGG - chr4_1:33547645-33547664 None:intergenic 35.0%
ATTAAGCACATGCACATCTT+TGG - chr4_1:33547674-33547693 None:intergenic 35.0%
! TGGTGATGATATTGTTCATG+AGG + chr4_1:33547726-33547745 Msa0544670:CDS 35.0%
TTCAATTTGGAAGCAGAAAC+AGG - chr4_1:33547760-33547779 None:intergenic 35.0%
GAGAGATGAACAAAGGATTA+AGG + chr4_1:33547870-33547889 Msa0544670:CDS 35.0%
! AATGATGTCACACCAGATTT+TGG + chr4_1:33547901-33547920 Msa0544670:CDS 35.0%
! ATGATGTCACACCAGATTTT+GGG + chr4_1:33547902-33547921 Msa0544670:CDS 35.0%
! GGATTTTGAACTCGTACATT+CGG - chr4_1:33547192-33547211 None:intergenic 35.0%
GAATGTACGAGTTCAAAATC+CGG + chr4_1:33547191-33547210 Msa0544670:CDS 35.0%
CTTCAGTTCTATACCTTGAA+GGG - chr4_1:33547405-33547424 None:intergenic 35.0%
AGAACTGAAGCTTGTAAAGA+TGG + chr4_1:33547415-33547434 Msa0544670:CDS 35.0%
!!! TTGTTTTTTTGAGGAGGTGT+AGG - chr4_1:33547526-33547545 None:intergenic 35.0%
CCACTTAACAAAGTAGAAGT+GGG - chr4_1:33547595-33547614 None:intergenic 35.0%
CCACTTCTACTTTGTTAAGT+GGG + chr4_1:33547593-33547612 Msa0544670:CDS 35.0%
AATTGGACAAAGGTGACAAA+GGG - chr4_1:33547645-33547664 None:intergenic 35.0%
ATTAAGCACATGCACATCTT+TGG - chr4_1:33547674-33547693 None:intergenic 35.0%
! TGGTGATGATATTGTTCATG+AGG + chr4_1:33547726-33547745 Msa0544670:CDS 35.0%
TTCAATTTGGAAGCAGAAAC+AGG - chr4_1:33547760-33547779 None:intergenic 35.0%
GAGAGATGAACAAAGGATTA+AGG + chr4_1:33547870-33547889 Msa0544670:CDS 35.0%
! AATGATGTCACACCAGATTT+TGG + chr4_1:33547901-33547920 Msa0544670:CDS 35.0%
! ATGATGTCACACCAGATTTT+GGG + chr4_1:33547902-33547921 Msa0544670:CDS 35.0%
!!! TGAGAGACTTTTTCAGGGAA+AGG - chr4_1:33547060-33547079 None:intergenic 40.0%
!!! GAGAGTGAGAGACTTTTTCA+GGG - chr4_1:33547065-33547084 None:intergenic 40.0%
!! TGAGAGTGAGAGACTTTTTC+AGG - chr4_1:33547066-33547085 None:intergenic 40.0%
GAAAAAGTCTCTCACTCTCA+TGG + chr4_1:33547066-33547085 Msa0544670:CDS 40.0%
ATCGGAAAACATGTCAGTGA+CGG - chr4_1:33547143-33547162 None:intergenic 40.0%
TGAACTCGTACATTCGGAAA+TGG - chr4_1:33547186-33547205 None:intergenic 40.0%
GCTTCAGTTCTATACCTTGA+AGG - chr4_1:33547406-33547425 None:intergenic 40.0%
! AGCAAAACTCTAAGTTGACG+AGG - chr4_1:33547481-33547500 None:intergenic 40.0%
CCCACTTCTACTTTGTTAAG+TGG + chr4_1:33547592-33547611 Msa0544670:CDS 40.0%
CCCACTTAACAAAGTAGAAG+TGG - chr4_1:33547596-33547615 None:intergenic 40.0%
ATTGGACAAAGGTGACAAAG+GGG - chr4_1:33547644-33547663 None:intergenic 40.0%
GAATTGGACAAAGGTGACAA+AGG - chr4_1:33547646-33547665 None:intergenic 40.0%
CCACAACCCAATGAAGAATT+AGG - chr4_1:33547808-33547827 None:intergenic 40.0%
! CCTAATTCTTCATTGGGTTG+TGG + chr4_1:33547805-33547824 Msa0544670:CDS 40.0%
!! TATAATTCAAGTGGTGGTGG+TGG + chr4_1:33547835-33547854 Msa0544670:CDS 40.0%
!!! TGAGAGACTTTTTCAGGGAA+AGG - chr4_1:33547060-33547079 None:intergenic 40.0%
!!! GAGAGTGAGAGACTTTTTCA+GGG - chr4_1:33547065-33547084 None:intergenic 40.0%
!! TGAGAGTGAGAGACTTTTTC+AGG - chr4_1:33547066-33547085 None:intergenic 40.0%
GAAAAAGTCTCTCACTCTCA+TGG + chr4_1:33547066-33547085 Msa0544670:CDS 40.0%
ATCGGAAAACATGTCAGTGA+CGG - chr4_1:33547143-33547162 None:intergenic 40.0%
TGAACTCGTACATTCGGAAA+TGG - chr4_1:33547186-33547205 None:intergenic 40.0%
GCTTCAGTTCTATACCTTGA+AGG - chr4_1:33547406-33547425 None:intergenic 40.0%
! AGCAAAACTCTAAGTTGACG+AGG - chr4_1:33547481-33547500 None:intergenic 40.0%
CCCACTTCTACTTTGTTAAG+TGG + chr4_1:33547592-33547611 Msa0544670:CDS 40.0%
CCCACTTAACAAAGTAGAAG+TGG - chr4_1:33547596-33547615 None:intergenic 40.0%
ATTGGACAAAGGTGACAAAG+GGG - chr4_1:33547644-33547663 None:intergenic 40.0%
GAATTGGACAAAGGTGACAA+AGG - chr4_1:33547646-33547665 None:intergenic 40.0%
CCACAACCCAATGAAGAATT+AGG - chr4_1:33547808-33547827 None:intergenic 40.0%
! CCTAATTCTTCATTGGGTTG+TGG + chr4_1:33547805-33547824 Msa0544670:CDS 40.0%
!! TATAATTCAAGTGGTGGTGG+TGG + chr4_1:33547835-33547854 Msa0544670:CDS 40.0%
! CACTGACATGTTTTCCGATG+AGG + chr4_1:33547144-33547163 Msa0544670:CDS 45.0%
GGAGGAATAAGGATCCTCAT+CGG - chr4_1:33547161-33547180 None:intergenic 45.0%
CTCGTACATTCGGAAATGGT+CGG - chr4_1:33547182-33547201 None:intergenic 45.0%
!! ACCGGAGTACTGATATCTGA+GGG - chr4_1:33547296-33547315 None:intergenic 45.0%
AGGTGTAGGAGAAGGAGAAA+GGG - chr4_1:33547512-33547531 None:intergenic 45.0%
!! TTTTGAGGAGGTGTAGGAGA+AGG - chr4_1:33547520-33547539 None:intergenic 45.0%
TTGGACAAAGGTGACAAAGG+GGG - chr4_1:33547643-33547662 None:intergenic 45.0%
! ATGTCACACCAGATTTTGGG+TGG + chr4_1:33547905-33547924 Msa0544670:CDS 45.0%
!! TGTCACACCAGATTTTGGGT+GGG + chr4_1:33547906-33547925 Msa0544670:CDS 45.0%
TCATTCACCCACCCAAAATC+TGG - chr4_1:33547916-33547935 None:intergenic 45.0%
! CACTGACATGTTTTCCGATG+AGG + chr4_1:33547144-33547163 Msa0544670:CDS 45.0%
GGAGGAATAAGGATCCTCAT+CGG - chr4_1:33547161-33547180 None:intergenic 45.0%
CTCGTACATTCGGAAATGGT+CGG - chr4_1:33547182-33547201 None:intergenic 45.0%
!! ACCGGAGTACTGATATCTGA+GGG - chr4_1:33547296-33547315 None:intergenic 45.0%
AGGTGTAGGAGAAGGAGAAA+GGG - chr4_1:33547512-33547531 None:intergenic 45.0%
!! TTTTGAGGAGGTGTAGGAGA+AGG - chr4_1:33547520-33547539 None:intergenic 45.0%
TTGGACAAAGGTGACAAAGG+GGG - chr4_1:33547643-33547662 None:intergenic 45.0%
! ATGTCACACCAGATTTTGGG+TGG + chr4_1:33547905-33547924 Msa0544670:CDS 45.0%
!! TGTCACACCAGATTTTGGGT+GGG + chr4_1:33547906-33547925 Msa0544670:CDS 45.0%
TCATTCACCCACCCAAAATC+TGG - chr4_1:33547916-33547935 None:intergenic 45.0%
TCATGGACAACATCCCACCA+AGG + chr4_1:33547083-33547102 Msa0544670:CDS 50.0%
CGGAAATGGTCGGAGGAATA+AGG - chr4_1:33547172-33547191 None:intergenic 50.0%
GTACATTCGGAAATGGTCGG+AGG - chr4_1:33547179-33547198 None:intergenic 50.0%
!! CGGAGTACTGATATCTGAGG+GGG - chr4_1:33547294-33547313 None:intergenic 50.0%
!! CCGGAGTACTGATATCTGAG+GGG - chr4_1:33547295-33547314 None:intergenic 50.0%
CCCCTCAGATATCAGTACTC+CGG + chr4_1:33547292-33547311 Msa0544670:CDS 50.0%
!! CACCGGAGTACTGATATCTG+AGG - chr4_1:33547297-33547316 None:intergenic 50.0%
CAGATATCAGTACTCCGGTG+AGG + chr4_1:33547297-33547316 Msa0544670:CDS 50.0%
GTAATCAGGACACACCTCAC+CGG - chr4_1:33547314-33547333 None:intergenic 50.0%
GAAGCCTGTGAATTCTCCCA+CGG + chr4_1:33547358-33547377 Msa0544670:CDS 50.0%
AAGCCTGTGAATTCTCCCAC+GGG + chr4_1:33547359-33547378 Msa0544670:CDS 50.0%
CCAGCATTCAAAAACCCCGT+GGG - chr4_1:33547377-33547396 None:intergenic 50.0%
ACCAGCATTCAAAAACCCCG+TGG - chr4_1:33547378-33547397 None:intergenic 50.0%
! AATGCTGGTTGCACCCTTCA+AGG + chr4_1:33547389-33547408 Msa0544670:CDS 50.0%
GGTGTAGGAGAAGGAGAAAG+GGG - chr4_1:33547511-33547530 None:intergenic 50.0%
GAGGTGTAGGAGAAGGAGAA+AGG - chr4_1:33547513-33547532 None:intergenic 50.0%
TCATGGACAACATCCCACCA+AGG + chr4_1:33547083-33547102 Msa0544670:CDS 50.0%
CGGAAATGGTCGGAGGAATA+AGG - chr4_1:33547172-33547191 None:intergenic 50.0%
GTACATTCGGAAATGGTCGG+AGG - chr4_1:33547179-33547198 None:intergenic 50.0%
!! CGGAGTACTGATATCTGAGG+GGG - chr4_1:33547294-33547313 None:intergenic 50.0%
!! CCGGAGTACTGATATCTGAG+GGG - chr4_1:33547295-33547314 None:intergenic 50.0%
CCCCTCAGATATCAGTACTC+CGG + chr4_1:33547292-33547311 Msa0544670:CDS 50.0%
!! CACCGGAGTACTGATATCTG+AGG - chr4_1:33547297-33547316 None:intergenic 50.0%
CAGATATCAGTACTCCGGTG+AGG + chr4_1:33547297-33547316 Msa0544670:CDS 50.0%
GTAATCAGGACACACCTCAC+CGG - chr4_1:33547314-33547333 None:intergenic 50.0%
GAAGCCTGTGAATTCTCCCA+CGG + chr4_1:33547358-33547377 Msa0544670:CDS 50.0%
AAGCCTGTGAATTCTCCCAC+GGG + chr4_1:33547359-33547378 Msa0544670:CDS 50.0%
CCAGCATTCAAAAACCCCGT+GGG - chr4_1:33547377-33547396 None:intergenic 50.0%
ACCAGCATTCAAAAACCCCG+TGG - chr4_1:33547378-33547397 None:intergenic 50.0%
! AATGCTGGTTGCACCCTTCA+AGG + chr4_1:33547389-33547408 Msa0544670:CDS 50.0%
GGTGTAGGAGAAGGAGAAAG+GGG - chr4_1:33547511-33547530 None:intergenic 50.0%
GAGGTGTAGGAGAAGGAGAA+AGG - chr4_1:33547513-33547532 None:intergenic 50.0%
GGGTGAGTAGCTTCCTTGGT+GGG - chr4_1:33547099-33547118 None:intergenic 55.0%
AAACATGTCAGTGACGGCCG+TGG - chr4_1:33547137-33547156 None:intergenic 55.0%
GATATCTGAGGGGGTCACGA+CGG - chr4_1:33547285-33547304 None:intergenic 55.0%
AGCCTGTGAATTCTCCCACG+GGG + chr4_1:33547360-33547379 Msa0544670:CDS 55.0%
AACCCCGTGGGAGAATTCAC+AGG - chr4_1:33547365-33547384 None:intergenic 55.0%
! CCCACGGGGTTTTTGAATGC+TGG + chr4_1:33547374-33547393 Msa0544670:CDS 55.0%
GTAGGAGAAGGAGAAAGGGG+TGG - chr4_1:33547508-33547527 None:intergenic 55.0%
GGGTGAGTAGCTTCCTTGGT+GGG - chr4_1:33547099-33547118 None:intergenic 55.0%
AAACATGTCAGTGACGGCCG+TGG - chr4_1:33547137-33547156 None:intergenic 55.0%
GATATCTGAGGGGGTCACGA+CGG - chr4_1:33547285-33547304 None:intergenic 55.0%
AGCCTGTGAATTCTCCCACG+GGG + chr4_1:33547360-33547379 Msa0544670:CDS 55.0%
AACCCCGTGGGAGAATTCAC+AGG - chr4_1:33547365-33547384 None:intergenic 55.0%
! CCCACGGGGTTTTTGAATGC+TGG + chr4_1:33547374-33547393 Msa0544670:CDS 55.0%
GTAGGAGAAGGAGAAAGGGG+TGG - chr4_1:33547508-33547527 None:intergenic 55.0%
CGGGTGAGTAGCTTCCTTGG+TGG - chr4_1:33547100-33547119 None:intergenic 60.0%
AGTCAGTCCAGTCGTGGCTC+CGG - chr4_1:33547231-33547250 None:intergenic 60.0%
AAGGGCAGTCAGTCCAGTCG+TGG - chr4_1:33547237-33547256 None:intergenic 60.0%
GTGTGTCCTGATTACCGCCG+CGG + chr4_1:33547319-33547338 Msa0544670:CDS 60.0%
CAGTTTCCGCGGCGGTAATC+AGG - chr4_1:33547328-33547347 None:intergenic 60.0%
CGGGTGAGTAGCTTCCTTGG+TGG - chr4_1:33547100-33547119 None:intergenic 60.0%
AGTCAGTCCAGTCGTGGCTC+CGG - chr4_1:33547231-33547250 None:intergenic 60.0%
AAGGGCAGTCAGTCCAGTCG+TGG - chr4_1:33547237-33547256 None:intergenic 60.0%
GTGTGTCCTGATTACCGCCG+CGG + chr4_1:33547319-33547338 Msa0544670:CDS 60.0%
CAGTTTCCGCGGCGGTAATC+AGG - chr4_1:33547328-33547347 None:intergenic 60.0%
CGGCGGGTGAGTAGCTTCCT+TGG - chr4_1:33547103-33547122 None:intergenic 65.0%
TCAGTGACGGCCGTGGAGGT+GGG - chr4_1:33547130-33547149 None:intergenic 65.0%
CATGTCAGTGACGGCCGTGG+AGG - chr4_1:33547134-33547153 None:intergenic 65.0%
TCCAGTCGTGGCTCCGGCTA+CGG - chr4_1:33547225-33547244 None:intergenic 65.0%
TGACTGCCCTTTCGCCCACC+CGG + chr4_1:33547246-33547265 Msa0544670:CDS 65.0%
TTTCCCCCGGGTGGGCGAAA+GGG - chr4_1:33547255-33547274 None:intergenic 65.0%
! TTTTCCCCCGGGTGGGCGAA+AGG - chr4_1:33547256-33547275 None:intergenic 65.0%
TTTCGCCCACCCGGGGGAAA+AGG + chr4_1:33547255-33547274 Msa0544670:CDS 65.0%
CGGCGGGTGAGTAGCTTCCT+TGG - chr4_1:33547103-33547122 None:intergenic 65.0%
TCAGTGACGGCCGTGGAGGT+GGG - chr4_1:33547130-33547149 None:intergenic 65.0%
CATGTCAGTGACGGCCGTGG+AGG - chr4_1:33547134-33547153 None:intergenic 65.0%
TCCAGTCGTGGCTCCGGCTA+CGG - chr4_1:33547225-33547244 None:intergenic 65.0%
TGACTGCCCTTTCGCCCACC+CGG + chr4_1:33547246-33547265 Msa0544670:CDS 65.0%
TTTCCCCCGGGTGGGCGAAA+GGG - chr4_1:33547255-33547274 None:intergenic 65.0%
! TTTTCCCCCGGGTGGGCGAA+AGG - chr4_1:33547256-33547275 None:intergenic 65.0%
TTTCGCCCACCCGGGGGAAA+AGG + chr4_1:33547255-33547274 Msa0544670:CDS 65.0%
GTCAGTGACGGCCGTGGAGG+TGG - chr4_1:33547131-33547150 None:intergenic 70.0%
TCCGGCGATGCACCCGTAGC+CGG + chr4_1:33547209-33547228 Msa0544670:CDS 70.0%
TCCGGCTACGGGTGCATCGC+CGG - chr4_1:33547213-33547232 None:intergenic 70.0%
CCAGTCGTGGCTCCGGCTAC+GGG - chr4_1:33547224-33547243 None:intergenic 70.0%
GACTGCCCTTTCGCCCACCC+GGG + chr4_1:33547247-33547266 Msa0544670:CDS 70.0%
ACTGCCCTTTCGCCCACCCG+GGG + chr4_1:33547248-33547267 Msa0544670:CDS 70.0%
! GCGTGCCTTTTCCCCCGGGT+GGG - chr4_1:33547263-33547282 None:intergenic 70.0%
! GACGGCGTGCCTTTTCCCCC+GGG - chr4_1:33547267-33547286 None:intergenic 70.0%
! CGACGGCGTGCCTTTTCCCC+CGG - chr4_1:33547268-33547287 None:intergenic 70.0%
CGCGTTCGCAGTTTCCGCGG+CGG - chr4_1:33547336-33547355 None:intergenic 70.0%
CGCCGCGGAAACTGCGAACG+CGG + chr4_1:33547334-33547353 Msa0544670:CDS 70.0%
CGCCGCGTTCGCAGTTTCCG+CGG - chr4_1:33547339-33547358 None:intergenic 70.0%
GTCAGTGACGGCCGTGGAGG+TGG - chr4_1:33547131-33547150 None:intergenic 70.0%
TCCGGCGATGCACCCGTAGC+CGG + chr4_1:33547209-33547228 Msa0544670:CDS 70.0%
TCCGGCTACGGGTGCATCGC+CGG - chr4_1:33547213-33547232 None:intergenic 70.0%
CCAGTCGTGGCTCCGGCTAC+GGG - chr4_1:33547224-33547243 None:intergenic 70.0%
GACTGCCCTTTCGCCCACCC+GGG + chr4_1:33547247-33547266 Msa0544670:CDS 70.0%
ACTGCCCTTTCGCCCACCCG+GGG + chr4_1:33547248-33547267 Msa0544670:CDS 70.0%
! GCGTGCCTTTTCCCCCGGGT+GGG - chr4_1:33547263-33547282 None:intergenic 70.0%
! GACGGCGTGCCTTTTCCCCC+GGG - chr4_1:33547267-33547286 None:intergenic 70.0%
! CGACGGCGTGCCTTTTCCCC+CGG - chr4_1:33547268-33547287 None:intergenic 70.0%
CGCGTTCGCAGTTTCCGCGG+CGG - chr4_1:33547336-33547355 None:intergenic 70.0%
CGCCGCGGAAACTGCGAACG+CGG + chr4_1:33547334-33547353 Msa0544670:CDS 70.0%
CGCCGCGTTCGCAGTTTCCG+CGG - chr4_1:33547339-33547358 None:intergenic 70.0%
CGTGGAGGTGGGTGAGCGGC+GGG - chr4_1:33547119-33547138 None:intergenic 75.0%
CCGTGGAGGTGGGTGAGCGG+CGG - chr4_1:33547120-33547139 None:intergenic 75.0%
CCGCCGCTCACCCACCTCCA+CGG + chr4_1:33547117-33547136 Msa0544670:CDS 75.0%
CGGCCGTGGAGGTGGGTGAG+CGG - chr4_1:33547123-33547142 None:intergenic 75.0%
CCCGTAGCCGGAGCCACGAC+TGG + chr4_1:33547221-33547240 Msa0544670:CDS 75.0%
CTGCCCTTTCGCCCACCCGG+GGG + chr4_1:33547249-33547268 Msa0544670:CDS 75.0%
! GGCGTGCCTTTTCCCCCGGG+TGG - chr4_1:33547264-33547283 None:intergenic 75.0%
CGTGGAGGTGGGTGAGCGGC+GGG - chr4_1:33547119-33547138 None:intergenic 75.0%
CCGTGGAGGTGGGTGAGCGG+CGG - chr4_1:33547120-33547139 None:intergenic 75.0%
CCGCCGCTCACCCACCTCCA+CGG + chr4_1:33547117-33547136 Msa0544670:CDS 75.0%
CGGCCGTGGAGGTGGGTGAG+CGG - chr4_1:33547123-33547142 None:intergenic 75.0%
CCCGTAGCCGGAGCCACGAC+TGG + chr4_1:33547221-33547240 Msa0544670:CDS 75.0%
CTGCCCTTTCGCCCACCCGG+GGG + chr4_1:33547249-33547268 Msa0544670:CDS 75.0%
! GGCGTGCCTTTTCCCCCGGG+TGG - chr4_1:33547264-33547283 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33547019 33547948 33547019 ID=Msa0544670;Name=Msa0544670
chr4_1 mRNA 33547019 33547948 33547019 ID=Msa0544670-mRNA-1;Parent=Msa0544670;Name=Msa0544670-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|309
chr4_1 exon 33547019 33547948 33547019 ID=Msa0544670-mRNA-1:exon:8562;Parent=Msa0544670-mRNA-1
chr4_1 CDS 33547019 33547948 33547019 ID=Msa0544670-mRNA-1:cds;Parent=Msa0544670-mRNA-1
Gene Sequence

>Msa0544670

ATGAGTGGTGTACTTTGTGAAGAGCAACAAAAACTTCTCCTTTCCCTGAAAAAGTCTCTCACTCTCATGGACAACATCCCACCAAGGAAGCTACTCACCCGCCGCTCACCCACCTCCACGGCCGTCACTGACATGTTTTCCGATGAGGATCCTTATTCCTCCGACCATTTCCGAATGTACGAGTTCAAAATCCGGCGATGCACCCGTAGCCGGAGCCACGACTGGACTGACTGCCCTTTCGCCCACCCGGGGGAAAAGGCACGCCGTCGTGACCCCCTCAGATATCAGTACTCCGGTGAGGTGTGTCCTGATTACCGCCGCGGAAACTGCGAACGCGGCGAAGCCTGTGAATTCTCCCACGGGGTTTTTGAATGCTGGTTGCACCCTTCAAGGTATAGAACTGAAGCTTGTAAAGATGGTAAAAATTGTAAGCGCAAAATTTGTTTTTTTGCTCATACACCTCGTCAACTTAGAGTTTTGCTTTTACCACCCCTTTCTCCTTCTCCTACACCTCCTCAAAAAAACAACAAAAAATGTTGTTCTTTCTGTCATTGCTGTTCAAATTCTTCTTCACCCACTTCTACTTTGTTAAGTGGGCCCCATTTTTCTTCTTCAAATTCACCCCCTTTGTCACCTTTGTCCAATTCAAATTCCAAAGATGTGCATGTGCTTAATGAGCTTATTCGTTCTATGGAGAGTTTTAACTTTGGTGATGATATTGTTCATGAGGCTAATTCACCTGTTTCTGCTTCCAAATTGAATTGGATTACTAATAATAACAATAATCCTAATTCTTCATTGGGTTGTGGAAAATATTATAATTCAAGTGGTGGTGGTGGTAGCATGTTTTTGAGAGATGAACAAAGGATTAAGGTTGTTGATAATGATGTCACACCAGATTTTGGGTGGGTGAATGAGCTGCTGATGTAG

Protein sequence

>Msa0544670

MSGVLCEEQQKLLLSLKKSLTLMDNIPPRKLLTRRSPTSTAVTDMFSDEDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRYQYSGEVCPDYRRGNCERGEACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPLSPSPTPPQKNNKKCCSFCHCCSNSSSPTSTLLSGPHFSSSNSPPLSPLSNSNSKDVHVLNELIRSMESFNFGDDIVHEANSPVSASKLNWITNNNNNPNSSLGCGKYYNSSGGGGSMFLRDEQRIKVVDNDVTPDFGWVNELLM*