Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544670 | XP_003607493.1 | 94.637 | 317 | 9 | 2 | 1 | 309 | 1 | 317 | 0.0 | 615 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544670 | sp|Q9ZWA1|C3H2_ARATH | 56.838 | 234 | 58 | 8 | 49 | 250 | 75 | 297 | 1.16e-76 | 242 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544670 | G7JTW1 | 94.637 | 317 | 9 | 2 | 1 | 309 | 1 | 317 | 0.0 | 615 |
Gene ID | Type | Classification |
---|---|---|
Msa0544670 | TF | C3H |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544670 | MtrunA17_Chr4g0040391 | 94.637 | 317 | 9 | 2 | 1 | 309 | 1 | 317 | 0.0 | 615 |
Msa0544670 | MtrunA17_Chr2g0324781 | 51.408 | 284 | 71 | 9 | 14 | 238 | 21 | 296 | 1.09e-77 | 243 |
Msa0544670 | MtrunA17_Chr8g0389561 | 51.813 | 193 | 84 | 4 | 50 | 237 | 75 | 263 | 3.39e-63 | 204 |
Msa0544670 | MtrunA17_Chr6g0487481 | 60.417 | 144 | 57 | 0 | 16 | 159 | 63 | 206 | 3.91e-63 | 204 |
Msa0544670 | MtrunA17_Chr3g0135351 | 55.280 | 161 | 51 | 3 | 52 | 211 | 49 | 189 | 1.04e-56 | 184 |
Msa0544670 | MtrunA17_Chr7g0257831 | 63.333 | 120 | 44 | 0 | 52 | 171 | 260 | 379 | 3.40e-54 | 188 |
Msa0544670 | MtrunA17_Chr3g0088521 | 49.708 | 171 | 76 | 4 | 52 | 217 | 260 | 425 | 5.15e-52 | 182 |
Msa0544670 | MtrunA17_Chr5g0437251 | 50.299 | 167 | 77 | 1 | 52 | 218 | 213 | 373 | 4.59e-49 | 173 |
Msa0544670 | MtrunA17_Chr1g0171151 | 57.500 | 120 | 49 | 1 | 52 | 171 | 240 | 357 | 1.39e-47 | 168 |
Msa0544670 | MtrunA17_Chr5g0430211 | 55.000 | 120 | 54 | 0 | 52 | 171 | 226 | 345 | 5.96e-47 | 167 |
Msa0544670 | MtrunA17_Chr3g0092221 | 55.000 | 120 | 54 | 0 | 52 | 171 | 154 | 273 | 3.49e-46 | 160 |
Msa0544670 | MtrunA17_Chr1g0187591 | 54.167 | 120 | 55 | 0 | 52 | 171 | 225 | 344 | 4.65e-45 | 162 |
Msa0544670 | MtrunA17_Chr3g0113651 | 42.775 | 173 | 89 | 2 | 8 | 170 | 105 | 277 | 8.99e-45 | 159 |
Msa0544670 | MtrunA17_Chr3g0105141 | 54.464 | 112 | 50 | 1 | 50 | 160 | 30 | 141 | 2.25e-42 | 144 |
Msa0544670 | MtrunA17_Chr3g0092171 | 42.373 | 177 | 93 | 3 | 52 | 227 | 271 | 439 | 1.66e-41 | 150 |
Msa0544670 | MtrunA17_Chr3g0105121 | 40.719 | 167 | 87 | 3 | 49 | 212 | 2 | 159 | 6.01e-36 | 132 |
Msa0544670 | MtrunA17_Chr3g0105131 | 49.541 | 109 | 41 | 1 | 52 | 160 | 176 | 270 | 5.82e-31 | 121 |
Msa0544670 | MtrunA17_Chr3g0105101 | 49.474 | 95 | 48 | 0 | 87 | 181 | 195 | 289 | 3.38e-29 | 115 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0544670 | AT1G03790.1 | 56.838 | 234 | 58 | 8 | 49 | 250 | 75 | 297 | 1.18e-77 | 242 |
Msa0544670 | AT5G44260.1 | 57.789 | 199 | 48 | 5 | 25 | 195 | 17 | 207 | 1.10e-68 | 219 |
Msa0544670 | AT4G29190.1 | 48.148 | 216 | 90 | 5 | 29 | 240 | 49 | 246 | 9.76e-62 | 200 |
Msa0544670 | AT2G19810.1 | 72.973 | 111 | 30 | 0 | 50 | 160 | 72 | 182 | 1.70e-61 | 199 |
Msa0544670 | AT2G25900.2 | 74.775 | 111 | 28 | 0 | 50 | 160 | 84 | 194 | 1.89e-61 | 198 |
Msa0544670 | AT2G25900.1 | 74.775 | 111 | 28 | 0 | 50 | 160 | 84 | 194 | 1.89e-61 | 198 |
Msa0544670 | AT2G41900.1 | 60.833 | 120 | 47 | 0 | 52 | 171 | 257 | 376 | 2.33e-52 | 183 |
Msa0544670 | AT5G07500.1 | 40.278 | 216 | 107 | 3 | 48 | 258 | 44 | 242 | 4.82e-51 | 169 |
Msa0544670 | AT5G58620.1 | 59.167 | 120 | 49 | 0 | 52 | 171 | 205 | 324 | 4.44e-50 | 175 |
Msa0544670 | AT5G12850.1 | 47.879 | 165 | 80 | 2 | 52 | 215 | 253 | 412 | 2.44e-49 | 174 |
Msa0544670 | AT2G40140.2 | 42.077 | 183 | 97 | 2 | 30 | 212 | 190 | 363 | 2.74e-45 | 162 |
Msa0544670 | AT2G40140.1 | 42.077 | 183 | 97 | 2 | 30 | 212 | 190 | 363 | 2.74e-45 | 162 |
Msa0544670 | AT3G55980.1 | 40.526 | 190 | 85 | 4 | 32 | 215 | 189 | 356 | 5.82e-45 | 161 |
Msa0544670 | AT3G55980.2 | 40.526 | 190 | 85 | 4 | 32 | 215 | 256 | 423 | 1.75e-44 | 160 |
Find 82 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGATGTCACACCAGATTT+TGG | 0.197364 | 4_1:+33547901 | Msa0544670:CDS |
CCACAACCCAATGAAGAATT+AGG | 0.197865 | 4_1:-33547805 | None:intergenic |
GAGAGATGAACAAAGGATTA+AGG | 0.262097 | 4_1:+33547870 | Msa0544670:CDS |
TAATGAGCTTATTCGTTCTA+TGG | 0.266931 | 4_1:+33547690 | Msa0544670:CDS |
CACATCTTTGGAATTTGAAT+TGG | 0.278211 | 4_1:-33547659 | None:intergenic |
ATTAGTAATCCAATTCAATT+TGG | 0.280023 | 4_1:-33547770 | None:intergenic |
CAATAATCCTAATTCTTCAT+TGG | 0.296388 | 4_1:+33547798 | Msa0544670:CDS |
ATTAAGCACATGCACATCTT+TGG | 0.304309 | 4_1:-33547671 | None:intergenic |
TTTCTGCTTCCAAATTGAAT+TGG | 0.317850 | 4_1:+33547761 | Msa0544670:CDS |
CGGAAATGGTCGGAGGAATA+AGG | 0.321371 | 4_1:-33547169 | None:intergenic |
AGGTGTAGGAGAAGGAGAAA+GGG | 0.351736 | 4_1:-33547509 | None:intergenic |
GTCAGTGACGGCCGTGGAGG+TGG | 0.351966 | 4_1:-33547128 | None:intergenic |
TCCAGTCGTGGCTCCGGCTA+CGG | 0.353618 | 4_1:-33547222 | None:intergenic |
CAGTTTCCGCGGCGGTAATC+AGG | 0.356290 | 4_1:-33547325 | None:intergenic |
TTCAATTTGGAAGCAGAAAC+AGG | 0.360306 | 4_1:-33547757 | None:intergenic |
AATAATCCTAATTCTTCATT+GGG | 0.373307 | 4_1:+33547799 | Msa0544670:CDS |
GAGGTGTAGGAGAAGGAGAA+AGG | 0.381509 | 4_1:-33547510 | None:intergenic |
AATGCTGGTTGCACCCTTCA+AGG | 0.396871 | 4_1:+33547389 | Msa0544670:CDS |
TGACTGCCCTTTCGCCCACC+CGG | 0.414504 | 4_1:+33547246 | Msa0544670:CDS |
TGAACTCGTACATTCGGAAA+TGG | 0.414832 | 4_1:-33547183 | None:intergenic |
CCAGTCGTGGCTCCGGCTAC+GGG | 0.415412 | 4_1:-33547221 | None:intergenic |
TCATTCACCCACCCAAAATC+TGG | 0.421911 | 4_1:-33547913 | None:intergenic |
CGTGGAGGTGGGTGAGCGGC+GGG | 0.431926 | 4_1:-33547116 | None:intergenic |
CCTAATTCTTCATTGGGTTG+TGG | 0.435345 | 4_1:+33547805 | Msa0544670:CDS |
CCCACTTCTACTTTGTTAAG+TGG | 0.437563 | 4_1:+33547592 | Msa0544670:CDS |
CGGCGGGTGAGTAGCTTCCT+TGG | 0.441619 | 4_1:-33547100 | None:intergenic |
GCTTCAGTTCTATACCTTGA+AGG | 0.441697 | 4_1:-33547403 | None:intergenic |
GACTGCCCTTTCGCCCACCC+GGG | 0.448196 | 4_1:+33547247 | Msa0544670:CDS |
TCCGGCTACGGGTGCATCGC+CGG | 0.451200 | 4_1:-33547210 | None:intergenic |
CCCGTAGCCGGAGCCACGAC+TGG | 0.463023 | 4_1:+33547221 | Msa0544670:CDS |
CGCCGCGTTCGCAGTTTCCG+CGG | 0.466468 | 4_1:-33547336 | None:intergenic |
CCGTGGAGGTGGGTGAGCGG+CGG | 0.479752 | 4_1:-33547117 | None:intergenic |
ACTGCCCTTTCGCCCACCCG+GGG | 0.491487 | 4_1:+33547248 | Msa0544670:CDS |
CCACTTCTACTTTGTTAAGT+GGG | 0.493579 | 4_1:+33547593 | Msa0544670:CDS |
AGTCAGTCCAGTCGTGGCTC+CGG | 0.493879 | 4_1:-33547228 | None:intergenic |
AGAACTGAAGCTTGTAAAGA+TGG | 0.494694 | 4_1:+33547415 | Msa0544670:CDS |
GGTGTAGGAGAAGGAGAAAG+GGG | 0.497014 | 4_1:-33547508 | None:intergenic |
AATTGGACAAAGGTGACAAA+GGG | 0.502505 | 4_1:-33547642 | None:intergenic |
TCCGGCGATGCACCCGTAGC+CGG | 0.506464 | 4_1:+33547209 | Msa0544670:CDS |
CGCCGCGGAAACTGCGAACG+CGG | 0.510281 | 4_1:+33547334 | Msa0544670:CDS |
TATTATAATTCAAGTGGTGG+TGG | 0.521610 | 4_1:+33547832 | Msa0544670:CDS |
TATAATTCAAGTGGTGGTGG+TGG | 0.522552 | 4_1:+33547835 | Msa0544670:CDS |
CTTCAGTTCTATACCTTGAA+GGG | 0.525702 | 4_1:-33547402 | None:intergenic |
GGGTGAGTAGCTTCCTTGGT+GGG | 0.529896 | 4_1:-33547096 | None:intergenic |
CGGGTGAGTAGCTTCCTTGG+TGG | 0.538038 | 4_1:-33547097 | None:intergenic |
TCAGTGACGGCCGTGGAGGT+GGG | 0.541805 | 4_1:-33547127 | None:intergenic |
AAGCCTGTGAATTCTCCCAC+GGG | 0.550657 | 4_1:+33547359 | Msa0544670:CDS |
AAACATGTCAGTGACGGCCG+TGG | 0.552764 | 4_1:-33547134 | None:intergenic |
GGAAAATATTATAATTCAAG+TGG | 0.553872 | 4_1:+33547826 | Msa0544670:CDS |
TTGGAATTTGAATTGGACAA+AGG | 0.558737 | 4_1:-33547652 | None:intergenic |
AACCCCGTGGGAGAATTCAC+AGG | 0.568943 | 4_1:-33547362 | None:intergenic |
CGGCCGTGGAGGTGGGTGAG+CGG | 0.570782 | 4_1:-33547120 | None:intergenic |
GAAGCCTGTGAATTCTCCCA+CGG | 0.574666 | 4_1:+33547358 | Msa0544670:CDS |
GAATTGGACAAAGGTGACAA+AGG | 0.576387 | 4_1:-33547643 | None:intergenic |
GAATGTACGAGTTCAAAATC+CGG | 0.577680 | 4_1:+33547191 | Msa0544670:CDS |
ACCGGAGTACTGATATCTGA+GGG | 0.579137 | 4_1:-33547293 | None:intergenic |
CCCACTTAACAAAGTAGAAG+TGG | 0.579402 | 4_1:-33547593 | None:intergenic |
CCGCCGCTCACCCACCTCCA+CGG | 0.583656 | 4_1:+33547117 | Msa0544670:CDS |
AAATATTATAATTCAAGTGG+TGG | 0.584829 | 4_1:+33547829 | Msa0544670:CDS |
CTCGTACATTCGGAAATGGT+CGG | 0.594163 | 4_1:-33547179 | None:intergenic |
CGCGTTCGCAGTTTCCGCGG+CGG | 0.608889 | 4_1:-33547333 | None:intergenic |
CCCCTCAGATATCAGTACTC+CGG | 0.612677 | 4_1:+33547292 | Msa0544670:CDS |
AAGGGCAGTCAGTCCAGTCG+TGG | 0.612908 | 4_1:-33547234 | None:intergenic |
TGGTGATGATATTGTTCATG+AGG | 0.613976 | 4_1:+33547726 | Msa0544670:CDS |
CATGTCAGTGACGGCCGTGG+AGG | 0.615263 | 4_1:-33547131 | None:intergenic |
ATCGGAAAACATGTCAGTGA+CGG | 0.625042 | 4_1:-33547140 | None:intergenic |
GTAGGAGAAGGAGAAAGGGG+TGG | 0.626978 | 4_1:-33547505 | None:intergenic |
GTAATCAGGACACACCTCAC+CGG | 0.640259 | 4_1:-33547311 | None:intergenic |
CTGCCCTTTCGCCCACCCGG+GGG | 0.643177 | 4_1:+33547249 | Msa0544670:CDS |
CACCGGAGTACTGATATCTG+AGG | 0.653509 | 4_1:-33547294 | None:intergenic |
CCACTTAACAAAGTAGAAGT+GGG | 0.659131 | 4_1:-33547592 | None:intergenic |
AGCAAAACTCTAAGTTGACG+AGG | 0.664102 | 4_1:-33547478 | None:intergenic |
GGAGGAATAAGGATCCTCAT+CGG | 0.669248 | 4_1:-33547158 | None:intergenic |
GTACATTCGGAAATGGTCGG+AGG | 0.686456 | 4_1:-33547176 | None:intergenic |
CGGAGTACTGATATCTGAGG+GGG | 0.692681 | 4_1:-33547291 | None:intergenic |
GTGTGTCCTGATTACCGCCG+CGG | 0.700292 | 4_1:+33547319 | Msa0544670:CDS |
TTGGACAAAGGTGACAAAGG+GGG | 0.709302 | 4_1:-33547640 | None:intergenic |
CAGATATCAGTACTCCGGTG+AGG | 0.711287 | 4_1:+33547297 | Msa0544670:CDS |
CCGGAGTACTGATATCTGAG+GGG | 0.714208 | 4_1:-33547292 | None:intergenic |
ATTGGACAAAGGTGACAAAG+GGG | 0.724475 | 4_1:-33547641 | None:intergenic |
TCATGGACAACATCCCACCA+AGG | 0.735832 | 4_1:+33547083 | Msa0544670:CDS |
AGCCTGTGAATTCTCCCACG+GGG | 0.745486 | 4_1:+33547360 | Msa0544670:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATTTTTTGTTGTTTTTTTG+AGG | - | chr4_1:33547535-33547554 | None:intergenic | 20.0% |
!! | TGAATTTGAAGAAGAAAAAT+GGG | - | chr4_1:33547620-33547639 | None:intergenic | 20.0% |
!! | ATTAGTAATCCAATTCAATT+TGG | - | chr4_1:33547773-33547792 | None:intergenic | 20.0% |
!! | AATAATCCTAATTCTTCATT+GGG | + | chr4_1:33547799-33547818 | Msa0544670:CDS | 20.0% |
!! | GGAAAATATTATAATTCAAG+TGG | + | chr4_1:33547826-33547845 | Msa0544670:CDS | 20.0% |
!! | AAATATTATAATTCAAGTGG+TGG | + | chr4_1:33547829-33547848 | Msa0544670:CDS | 20.0% |
!!! | CATTTTTTGTTGTTTTTTTG+AGG | - | chr4_1:33547535-33547554 | None:intergenic | 20.0% |
!! | TGAATTTGAAGAAGAAAAAT+GGG | - | chr4_1:33547620-33547639 | None:intergenic | 20.0% |
!! | ATTAGTAATCCAATTCAATT+TGG | - | chr4_1:33547773-33547792 | None:intergenic | 20.0% |
!! | AATAATCCTAATTCTTCATT+GGG | + | chr4_1:33547799-33547818 | Msa0544670:CDS | 20.0% |
!! | GGAAAATATTATAATTCAAG+TGG | + | chr4_1:33547826-33547845 | Msa0544670:CDS | 20.0% |
!! | AAATATTATAATTCAAGTGG+TGG | + | chr4_1:33547829-33547848 | Msa0544670:CDS | 20.0% |
!!! | TTTTTGTTGTTTTTTTGAGG+AGG | - | chr4_1:33547532-33547551 | None:intergenic | 25.0% |
! | GAATTTGAAGAAGAAAAATG+GGG | - | chr4_1:33547619-33547638 | None:intergenic | 25.0% |
! | GTGAATTTGAAGAAGAAAAA+TGG | - | chr4_1:33547621-33547640 | None:intergenic | 25.0% |
! | CAATAATCCTAATTCTTCAT+TGG | + | chr4_1:33547798-33547817 | Msa0544670:CDS | 25.0% |
!!! | TTTTTGTTGTTTTTTTGAGG+AGG | - | chr4_1:33547532-33547551 | None:intergenic | 25.0% |
! | GAATTTGAAGAAGAAAAATG+GGG | - | chr4_1:33547619-33547638 | None:intergenic | 25.0% |
! | GTGAATTTGAAGAAGAAAAA+TGG | - | chr4_1:33547621-33547640 | None:intergenic | 25.0% |
! | CAATAATCCTAATTCTTCAT+TGG | + | chr4_1:33547798-33547817 | Msa0544670:CDS | 25.0% |
TTGGAATTTGAATTGGACAA+AGG | - | chr4_1:33547655-33547674 | None:intergenic | 30.0% | |
!! | CACATCTTTGGAATTTGAAT+TGG | - | chr4_1:33547662-33547681 | None:intergenic | 30.0% |
TAATGAGCTTATTCGTTCTA+TGG | + | chr4_1:33547690-33547709 | Msa0544670:CDS | 30.0% | |
!!! | TCTATGGAGAGTTTTAACTT+TGG | + | chr4_1:33547706-33547725 | Msa0544670:CDS | 30.0% |
TTTCTGCTTCCAAATTGAAT+TGG | + | chr4_1:33547761-33547780 | Msa0544670:CDS | 30.0% | |
TATTATAATTCAAGTGGTGG+TGG | + | chr4_1:33547832-33547851 | Msa0544670:CDS | 30.0% | |
!! | TGTTTTTGAGAGATGAACAA+AGG | + | chr4_1:33547863-33547882 | Msa0544670:CDS | 30.0% |
TTGGAATTTGAATTGGACAA+AGG | - | chr4_1:33547655-33547674 | None:intergenic | 30.0% | |
!! | CACATCTTTGGAATTTGAAT+TGG | - | chr4_1:33547662-33547681 | None:intergenic | 30.0% |
TAATGAGCTTATTCGTTCTA+TGG | + | chr4_1:33547690-33547709 | Msa0544670:CDS | 30.0% | |
!!! | TCTATGGAGAGTTTTAACTT+TGG | + | chr4_1:33547706-33547725 | Msa0544670:CDS | 30.0% |
TTTCTGCTTCCAAATTGAAT+TGG | + | chr4_1:33547761-33547780 | Msa0544670:CDS | 30.0% | |
TATTATAATTCAAGTGGTGG+TGG | + | chr4_1:33547832-33547851 | Msa0544670:CDS | 30.0% | |
!! | TGTTTTTGAGAGATGAACAA+AGG | + | chr4_1:33547863-33547882 | Msa0544670:CDS | 30.0% |
! | GGATTTTGAACTCGTACATT+CGG | - | chr4_1:33547192-33547211 | None:intergenic | 35.0% |
GAATGTACGAGTTCAAAATC+CGG | + | chr4_1:33547191-33547210 | Msa0544670:CDS | 35.0% | |
CTTCAGTTCTATACCTTGAA+GGG | - | chr4_1:33547405-33547424 | None:intergenic | 35.0% | |
AGAACTGAAGCTTGTAAAGA+TGG | + | chr4_1:33547415-33547434 | Msa0544670:CDS | 35.0% | |
!!! | TTGTTTTTTTGAGGAGGTGT+AGG | - | chr4_1:33547526-33547545 | None:intergenic | 35.0% |
CCACTTAACAAAGTAGAAGT+GGG | - | chr4_1:33547595-33547614 | None:intergenic | 35.0% | |
CCACTTCTACTTTGTTAAGT+GGG | + | chr4_1:33547593-33547612 | Msa0544670:CDS | 35.0% | |
AATTGGACAAAGGTGACAAA+GGG | - | chr4_1:33547645-33547664 | None:intergenic | 35.0% | |
ATTAAGCACATGCACATCTT+TGG | - | chr4_1:33547674-33547693 | None:intergenic | 35.0% | |
! | TGGTGATGATATTGTTCATG+AGG | + | chr4_1:33547726-33547745 | Msa0544670:CDS | 35.0% |
TTCAATTTGGAAGCAGAAAC+AGG | - | chr4_1:33547760-33547779 | None:intergenic | 35.0% | |
GAGAGATGAACAAAGGATTA+AGG | + | chr4_1:33547870-33547889 | Msa0544670:CDS | 35.0% | |
! | AATGATGTCACACCAGATTT+TGG | + | chr4_1:33547901-33547920 | Msa0544670:CDS | 35.0% |
! | ATGATGTCACACCAGATTTT+GGG | + | chr4_1:33547902-33547921 | Msa0544670:CDS | 35.0% |
! | GGATTTTGAACTCGTACATT+CGG | - | chr4_1:33547192-33547211 | None:intergenic | 35.0% |
GAATGTACGAGTTCAAAATC+CGG | + | chr4_1:33547191-33547210 | Msa0544670:CDS | 35.0% | |
CTTCAGTTCTATACCTTGAA+GGG | - | chr4_1:33547405-33547424 | None:intergenic | 35.0% | |
AGAACTGAAGCTTGTAAAGA+TGG | + | chr4_1:33547415-33547434 | Msa0544670:CDS | 35.0% | |
!!! | TTGTTTTTTTGAGGAGGTGT+AGG | - | chr4_1:33547526-33547545 | None:intergenic | 35.0% |
CCACTTAACAAAGTAGAAGT+GGG | - | chr4_1:33547595-33547614 | None:intergenic | 35.0% | |
CCACTTCTACTTTGTTAAGT+GGG | + | chr4_1:33547593-33547612 | Msa0544670:CDS | 35.0% | |
AATTGGACAAAGGTGACAAA+GGG | - | chr4_1:33547645-33547664 | None:intergenic | 35.0% | |
ATTAAGCACATGCACATCTT+TGG | - | chr4_1:33547674-33547693 | None:intergenic | 35.0% | |
! | TGGTGATGATATTGTTCATG+AGG | + | chr4_1:33547726-33547745 | Msa0544670:CDS | 35.0% |
TTCAATTTGGAAGCAGAAAC+AGG | - | chr4_1:33547760-33547779 | None:intergenic | 35.0% | |
GAGAGATGAACAAAGGATTA+AGG | + | chr4_1:33547870-33547889 | Msa0544670:CDS | 35.0% | |
! | AATGATGTCACACCAGATTT+TGG | + | chr4_1:33547901-33547920 | Msa0544670:CDS | 35.0% |
! | ATGATGTCACACCAGATTTT+GGG | + | chr4_1:33547902-33547921 | Msa0544670:CDS | 35.0% |
!!! | TGAGAGACTTTTTCAGGGAA+AGG | - | chr4_1:33547060-33547079 | None:intergenic | 40.0% |
!!! | GAGAGTGAGAGACTTTTTCA+GGG | - | chr4_1:33547065-33547084 | None:intergenic | 40.0% |
!! | TGAGAGTGAGAGACTTTTTC+AGG | - | chr4_1:33547066-33547085 | None:intergenic | 40.0% |
GAAAAAGTCTCTCACTCTCA+TGG | + | chr4_1:33547066-33547085 | Msa0544670:CDS | 40.0% | |
ATCGGAAAACATGTCAGTGA+CGG | - | chr4_1:33547143-33547162 | None:intergenic | 40.0% | |
TGAACTCGTACATTCGGAAA+TGG | - | chr4_1:33547186-33547205 | None:intergenic | 40.0% | |
GCTTCAGTTCTATACCTTGA+AGG | - | chr4_1:33547406-33547425 | None:intergenic | 40.0% | |
! | AGCAAAACTCTAAGTTGACG+AGG | - | chr4_1:33547481-33547500 | None:intergenic | 40.0% |
CCCACTTCTACTTTGTTAAG+TGG | + | chr4_1:33547592-33547611 | Msa0544670:CDS | 40.0% | |
CCCACTTAACAAAGTAGAAG+TGG | - | chr4_1:33547596-33547615 | None:intergenic | 40.0% | |
ATTGGACAAAGGTGACAAAG+GGG | - | chr4_1:33547644-33547663 | None:intergenic | 40.0% | |
GAATTGGACAAAGGTGACAA+AGG | - | chr4_1:33547646-33547665 | None:intergenic | 40.0% | |
CCACAACCCAATGAAGAATT+AGG | - | chr4_1:33547808-33547827 | None:intergenic | 40.0% | |
! | CCTAATTCTTCATTGGGTTG+TGG | + | chr4_1:33547805-33547824 | Msa0544670:CDS | 40.0% |
!! | TATAATTCAAGTGGTGGTGG+TGG | + | chr4_1:33547835-33547854 | Msa0544670:CDS | 40.0% |
!!! | TGAGAGACTTTTTCAGGGAA+AGG | - | chr4_1:33547060-33547079 | None:intergenic | 40.0% |
!!! | GAGAGTGAGAGACTTTTTCA+GGG | - | chr4_1:33547065-33547084 | None:intergenic | 40.0% |
!! | TGAGAGTGAGAGACTTTTTC+AGG | - | chr4_1:33547066-33547085 | None:intergenic | 40.0% |
GAAAAAGTCTCTCACTCTCA+TGG | + | chr4_1:33547066-33547085 | Msa0544670:CDS | 40.0% | |
ATCGGAAAACATGTCAGTGA+CGG | - | chr4_1:33547143-33547162 | None:intergenic | 40.0% | |
TGAACTCGTACATTCGGAAA+TGG | - | chr4_1:33547186-33547205 | None:intergenic | 40.0% | |
GCTTCAGTTCTATACCTTGA+AGG | - | chr4_1:33547406-33547425 | None:intergenic | 40.0% | |
! | AGCAAAACTCTAAGTTGACG+AGG | - | chr4_1:33547481-33547500 | None:intergenic | 40.0% |
CCCACTTCTACTTTGTTAAG+TGG | + | chr4_1:33547592-33547611 | Msa0544670:CDS | 40.0% | |
CCCACTTAACAAAGTAGAAG+TGG | - | chr4_1:33547596-33547615 | None:intergenic | 40.0% | |
ATTGGACAAAGGTGACAAAG+GGG | - | chr4_1:33547644-33547663 | None:intergenic | 40.0% | |
GAATTGGACAAAGGTGACAA+AGG | - | chr4_1:33547646-33547665 | None:intergenic | 40.0% | |
CCACAACCCAATGAAGAATT+AGG | - | chr4_1:33547808-33547827 | None:intergenic | 40.0% | |
! | CCTAATTCTTCATTGGGTTG+TGG | + | chr4_1:33547805-33547824 | Msa0544670:CDS | 40.0% |
!! | TATAATTCAAGTGGTGGTGG+TGG | + | chr4_1:33547835-33547854 | Msa0544670:CDS | 40.0% |
! | CACTGACATGTTTTCCGATG+AGG | + | chr4_1:33547144-33547163 | Msa0544670:CDS | 45.0% |
GGAGGAATAAGGATCCTCAT+CGG | - | chr4_1:33547161-33547180 | None:intergenic | 45.0% | |
CTCGTACATTCGGAAATGGT+CGG | - | chr4_1:33547182-33547201 | None:intergenic | 45.0% | |
!! | ACCGGAGTACTGATATCTGA+GGG | - | chr4_1:33547296-33547315 | None:intergenic | 45.0% |
AGGTGTAGGAGAAGGAGAAA+GGG | - | chr4_1:33547512-33547531 | None:intergenic | 45.0% | |
!! | TTTTGAGGAGGTGTAGGAGA+AGG | - | chr4_1:33547520-33547539 | None:intergenic | 45.0% |
TTGGACAAAGGTGACAAAGG+GGG | - | chr4_1:33547643-33547662 | None:intergenic | 45.0% | |
! | ATGTCACACCAGATTTTGGG+TGG | + | chr4_1:33547905-33547924 | Msa0544670:CDS | 45.0% |
!! | TGTCACACCAGATTTTGGGT+GGG | + | chr4_1:33547906-33547925 | Msa0544670:CDS | 45.0% |
TCATTCACCCACCCAAAATC+TGG | - | chr4_1:33547916-33547935 | None:intergenic | 45.0% | |
! | CACTGACATGTTTTCCGATG+AGG | + | chr4_1:33547144-33547163 | Msa0544670:CDS | 45.0% |
GGAGGAATAAGGATCCTCAT+CGG | - | chr4_1:33547161-33547180 | None:intergenic | 45.0% | |
CTCGTACATTCGGAAATGGT+CGG | - | chr4_1:33547182-33547201 | None:intergenic | 45.0% | |
!! | ACCGGAGTACTGATATCTGA+GGG | - | chr4_1:33547296-33547315 | None:intergenic | 45.0% |
AGGTGTAGGAGAAGGAGAAA+GGG | - | chr4_1:33547512-33547531 | None:intergenic | 45.0% | |
!! | TTTTGAGGAGGTGTAGGAGA+AGG | - | chr4_1:33547520-33547539 | None:intergenic | 45.0% |
TTGGACAAAGGTGACAAAGG+GGG | - | chr4_1:33547643-33547662 | None:intergenic | 45.0% | |
! | ATGTCACACCAGATTTTGGG+TGG | + | chr4_1:33547905-33547924 | Msa0544670:CDS | 45.0% |
!! | TGTCACACCAGATTTTGGGT+GGG | + | chr4_1:33547906-33547925 | Msa0544670:CDS | 45.0% |
TCATTCACCCACCCAAAATC+TGG | - | chr4_1:33547916-33547935 | None:intergenic | 45.0% | |
TCATGGACAACATCCCACCA+AGG | + | chr4_1:33547083-33547102 | Msa0544670:CDS | 50.0% | |
CGGAAATGGTCGGAGGAATA+AGG | - | chr4_1:33547172-33547191 | None:intergenic | 50.0% | |
GTACATTCGGAAATGGTCGG+AGG | - | chr4_1:33547179-33547198 | None:intergenic | 50.0% | |
!! | CGGAGTACTGATATCTGAGG+GGG | - | chr4_1:33547294-33547313 | None:intergenic | 50.0% |
!! | CCGGAGTACTGATATCTGAG+GGG | - | chr4_1:33547295-33547314 | None:intergenic | 50.0% |
CCCCTCAGATATCAGTACTC+CGG | + | chr4_1:33547292-33547311 | Msa0544670:CDS | 50.0% | |
!! | CACCGGAGTACTGATATCTG+AGG | - | chr4_1:33547297-33547316 | None:intergenic | 50.0% |
CAGATATCAGTACTCCGGTG+AGG | + | chr4_1:33547297-33547316 | Msa0544670:CDS | 50.0% | |
GTAATCAGGACACACCTCAC+CGG | - | chr4_1:33547314-33547333 | None:intergenic | 50.0% | |
GAAGCCTGTGAATTCTCCCA+CGG | + | chr4_1:33547358-33547377 | Msa0544670:CDS | 50.0% | |
AAGCCTGTGAATTCTCCCAC+GGG | + | chr4_1:33547359-33547378 | Msa0544670:CDS | 50.0% | |
CCAGCATTCAAAAACCCCGT+GGG | - | chr4_1:33547377-33547396 | None:intergenic | 50.0% | |
ACCAGCATTCAAAAACCCCG+TGG | - | chr4_1:33547378-33547397 | None:intergenic | 50.0% | |
! | AATGCTGGTTGCACCCTTCA+AGG | + | chr4_1:33547389-33547408 | Msa0544670:CDS | 50.0% |
GGTGTAGGAGAAGGAGAAAG+GGG | - | chr4_1:33547511-33547530 | None:intergenic | 50.0% | |
GAGGTGTAGGAGAAGGAGAA+AGG | - | chr4_1:33547513-33547532 | None:intergenic | 50.0% | |
TCATGGACAACATCCCACCA+AGG | + | chr4_1:33547083-33547102 | Msa0544670:CDS | 50.0% | |
CGGAAATGGTCGGAGGAATA+AGG | - | chr4_1:33547172-33547191 | None:intergenic | 50.0% | |
GTACATTCGGAAATGGTCGG+AGG | - | chr4_1:33547179-33547198 | None:intergenic | 50.0% | |
!! | CGGAGTACTGATATCTGAGG+GGG | - | chr4_1:33547294-33547313 | None:intergenic | 50.0% |
!! | CCGGAGTACTGATATCTGAG+GGG | - | chr4_1:33547295-33547314 | None:intergenic | 50.0% |
CCCCTCAGATATCAGTACTC+CGG | + | chr4_1:33547292-33547311 | Msa0544670:CDS | 50.0% | |
!! | CACCGGAGTACTGATATCTG+AGG | - | chr4_1:33547297-33547316 | None:intergenic | 50.0% |
CAGATATCAGTACTCCGGTG+AGG | + | chr4_1:33547297-33547316 | Msa0544670:CDS | 50.0% | |
GTAATCAGGACACACCTCAC+CGG | - | chr4_1:33547314-33547333 | None:intergenic | 50.0% | |
GAAGCCTGTGAATTCTCCCA+CGG | + | chr4_1:33547358-33547377 | Msa0544670:CDS | 50.0% | |
AAGCCTGTGAATTCTCCCAC+GGG | + | chr4_1:33547359-33547378 | Msa0544670:CDS | 50.0% | |
CCAGCATTCAAAAACCCCGT+GGG | - | chr4_1:33547377-33547396 | None:intergenic | 50.0% | |
ACCAGCATTCAAAAACCCCG+TGG | - | chr4_1:33547378-33547397 | None:intergenic | 50.0% | |
! | AATGCTGGTTGCACCCTTCA+AGG | + | chr4_1:33547389-33547408 | Msa0544670:CDS | 50.0% |
GGTGTAGGAGAAGGAGAAAG+GGG | - | chr4_1:33547511-33547530 | None:intergenic | 50.0% | |
GAGGTGTAGGAGAAGGAGAA+AGG | - | chr4_1:33547513-33547532 | None:intergenic | 50.0% | |
GGGTGAGTAGCTTCCTTGGT+GGG | - | chr4_1:33547099-33547118 | None:intergenic | 55.0% | |
AAACATGTCAGTGACGGCCG+TGG | - | chr4_1:33547137-33547156 | None:intergenic | 55.0% | |
GATATCTGAGGGGGTCACGA+CGG | - | chr4_1:33547285-33547304 | None:intergenic | 55.0% | |
AGCCTGTGAATTCTCCCACG+GGG | + | chr4_1:33547360-33547379 | Msa0544670:CDS | 55.0% | |
AACCCCGTGGGAGAATTCAC+AGG | - | chr4_1:33547365-33547384 | None:intergenic | 55.0% | |
! | CCCACGGGGTTTTTGAATGC+TGG | + | chr4_1:33547374-33547393 | Msa0544670:CDS | 55.0% |
GTAGGAGAAGGAGAAAGGGG+TGG | - | chr4_1:33547508-33547527 | None:intergenic | 55.0% | |
GGGTGAGTAGCTTCCTTGGT+GGG | - | chr4_1:33547099-33547118 | None:intergenic | 55.0% | |
AAACATGTCAGTGACGGCCG+TGG | - | chr4_1:33547137-33547156 | None:intergenic | 55.0% | |
GATATCTGAGGGGGTCACGA+CGG | - | chr4_1:33547285-33547304 | None:intergenic | 55.0% | |
AGCCTGTGAATTCTCCCACG+GGG | + | chr4_1:33547360-33547379 | Msa0544670:CDS | 55.0% | |
AACCCCGTGGGAGAATTCAC+AGG | - | chr4_1:33547365-33547384 | None:intergenic | 55.0% | |
! | CCCACGGGGTTTTTGAATGC+TGG | + | chr4_1:33547374-33547393 | Msa0544670:CDS | 55.0% |
GTAGGAGAAGGAGAAAGGGG+TGG | - | chr4_1:33547508-33547527 | None:intergenic | 55.0% | |
CGGGTGAGTAGCTTCCTTGG+TGG | - | chr4_1:33547100-33547119 | None:intergenic | 60.0% | |
AGTCAGTCCAGTCGTGGCTC+CGG | - | chr4_1:33547231-33547250 | None:intergenic | 60.0% | |
AAGGGCAGTCAGTCCAGTCG+TGG | - | chr4_1:33547237-33547256 | None:intergenic | 60.0% | |
GTGTGTCCTGATTACCGCCG+CGG | + | chr4_1:33547319-33547338 | Msa0544670:CDS | 60.0% | |
CAGTTTCCGCGGCGGTAATC+AGG | - | chr4_1:33547328-33547347 | None:intergenic | 60.0% | |
CGGGTGAGTAGCTTCCTTGG+TGG | - | chr4_1:33547100-33547119 | None:intergenic | 60.0% | |
AGTCAGTCCAGTCGTGGCTC+CGG | - | chr4_1:33547231-33547250 | None:intergenic | 60.0% | |
AAGGGCAGTCAGTCCAGTCG+TGG | - | chr4_1:33547237-33547256 | None:intergenic | 60.0% | |
GTGTGTCCTGATTACCGCCG+CGG | + | chr4_1:33547319-33547338 | Msa0544670:CDS | 60.0% | |
CAGTTTCCGCGGCGGTAATC+AGG | - | chr4_1:33547328-33547347 | None:intergenic | 60.0% | |
CGGCGGGTGAGTAGCTTCCT+TGG | - | chr4_1:33547103-33547122 | None:intergenic | 65.0% | |
TCAGTGACGGCCGTGGAGGT+GGG | - | chr4_1:33547130-33547149 | None:intergenic | 65.0% | |
CATGTCAGTGACGGCCGTGG+AGG | - | chr4_1:33547134-33547153 | None:intergenic | 65.0% | |
TCCAGTCGTGGCTCCGGCTA+CGG | - | chr4_1:33547225-33547244 | None:intergenic | 65.0% | |
TGACTGCCCTTTCGCCCACC+CGG | + | chr4_1:33547246-33547265 | Msa0544670:CDS | 65.0% | |
TTTCCCCCGGGTGGGCGAAA+GGG | - | chr4_1:33547255-33547274 | None:intergenic | 65.0% | |
! | TTTTCCCCCGGGTGGGCGAA+AGG | - | chr4_1:33547256-33547275 | None:intergenic | 65.0% |
TTTCGCCCACCCGGGGGAAA+AGG | + | chr4_1:33547255-33547274 | Msa0544670:CDS | 65.0% | |
CGGCGGGTGAGTAGCTTCCT+TGG | - | chr4_1:33547103-33547122 | None:intergenic | 65.0% | |
TCAGTGACGGCCGTGGAGGT+GGG | - | chr4_1:33547130-33547149 | None:intergenic | 65.0% | |
CATGTCAGTGACGGCCGTGG+AGG | - | chr4_1:33547134-33547153 | None:intergenic | 65.0% | |
TCCAGTCGTGGCTCCGGCTA+CGG | - | chr4_1:33547225-33547244 | None:intergenic | 65.0% | |
TGACTGCCCTTTCGCCCACC+CGG | + | chr4_1:33547246-33547265 | Msa0544670:CDS | 65.0% | |
TTTCCCCCGGGTGGGCGAAA+GGG | - | chr4_1:33547255-33547274 | None:intergenic | 65.0% | |
! | TTTTCCCCCGGGTGGGCGAA+AGG | - | chr4_1:33547256-33547275 | None:intergenic | 65.0% |
TTTCGCCCACCCGGGGGAAA+AGG | + | chr4_1:33547255-33547274 | Msa0544670:CDS | 65.0% | |
GTCAGTGACGGCCGTGGAGG+TGG | - | chr4_1:33547131-33547150 | None:intergenic | 70.0% | |
TCCGGCGATGCACCCGTAGC+CGG | + | chr4_1:33547209-33547228 | Msa0544670:CDS | 70.0% | |
TCCGGCTACGGGTGCATCGC+CGG | - | chr4_1:33547213-33547232 | None:intergenic | 70.0% | |
CCAGTCGTGGCTCCGGCTAC+GGG | - | chr4_1:33547224-33547243 | None:intergenic | 70.0% | |
GACTGCCCTTTCGCCCACCC+GGG | + | chr4_1:33547247-33547266 | Msa0544670:CDS | 70.0% | |
ACTGCCCTTTCGCCCACCCG+GGG | + | chr4_1:33547248-33547267 | Msa0544670:CDS | 70.0% | |
! | GCGTGCCTTTTCCCCCGGGT+GGG | - | chr4_1:33547263-33547282 | None:intergenic | 70.0% |
! | GACGGCGTGCCTTTTCCCCC+GGG | - | chr4_1:33547267-33547286 | None:intergenic | 70.0% |
! | CGACGGCGTGCCTTTTCCCC+CGG | - | chr4_1:33547268-33547287 | None:intergenic | 70.0% |
CGCGTTCGCAGTTTCCGCGG+CGG | - | chr4_1:33547336-33547355 | None:intergenic | 70.0% | |
CGCCGCGGAAACTGCGAACG+CGG | + | chr4_1:33547334-33547353 | Msa0544670:CDS | 70.0% | |
CGCCGCGTTCGCAGTTTCCG+CGG | - | chr4_1:33547339-33547358 | None:intergenic | 70.0% | |
GTCAGTGACGGCCGTGGAGG+TGG | - | chr4_1:33547131-33547150 | None:intergenic | 70.0% | |
TCCGGCGATGCACCCGTAGC+CGG | + | chr4_1:33547209-33547228 | Msa0544670:CDS | 70.0% | |
TCCGGCTACGGGTGCATCGC+CGG | - | chr4_1:33547213-33547232 | None:intergenic | 70.0% | |
CCAGTCGTGGCTCCGGCTAC+GGG | - | chr4_1:33547224-33547243 | None:intergenic | 70.0% | |
GACTGCCCTTTCGCCCACCC+GGG | + | chr4_1:33547247-33547266 | Msa0544670:CDS | 70.0% | |
ACTGCCCTTTCGCCCACCCG+GGG | + | chr4_1:33547248-33547267 | Msa0544670:CDS | 70.0% | |
! | GCGTGCCTTTTCCCCCGGGT+GGG | - | chr4_1:33547263-33547282 | None:intergenic | 70.0% |
! | GACGGCGTGCCTTTTCCCCC+GGG | - | chr4_1:33547267-33547286 | None:intergenic | 70.0% |
! | CGACGGCGTGCCTTTTCCCC+CGG | - | chr4_1:33547268-33547287 | None:intergenic | 70.0% |
CGCGTTCGCAGTTTCCGCGG+CGG | - | chr4_1:33547336-33547355 | None:intergenic | 70.0% | |
CGCCGCGGAAACTGCGAACG+CGG | + | chr4_1:33547334-33547353 | Msa0544670:CDS | 70.0% | |
CGCCGCGTTCGCAGTTTCCG+CGG | - | chr4_1:33547339-33547358 | None:intergenic | 70.0% | |
CGTGGAGGTGGGTGAGCGGC+GGG | - | chr4_1:33547119-33547138 | None:intergenic | 75.0% | |
CCGTGGAGGTGGGTGAGCGG+CGG | - | chr4_1:33547120-33547139 | None:intergenic | 75.0% | |
CCGCCGCTCACCCACCTCCA+CGG | + | chr4_1:33547117-33547136 | Msa0544670:CDS | 75.0% | |
CGGCCGTGGAGGTGGGTGAG+CGG | - | chr4_1:33547123-33547142 | None:intergenic | 75.0% | |
CCCGTAGCCGGAGCCACGAC+TGG | + | chr4_1:33547221-33547240 | Msa0544670:CDS | 75.0% | |
CTGCCCTTTCGCCCACCCGG+GGG | + | chr4_1:33547249-33547268 | Msa0544670:CDS | 75.0% | |
! | GGCGTGCCTTTTCCCCCGGG+TGG | - | chr4_1:33547264-33547283 | None:intergenic | 75.0% |
CGTGGAGGTGGGTGAGCGGC+GGG | - | chr4_1:33547119-33547138 | None:intergenic | 75.0% | |
CCGTGGAGGTGGGTGAGCGG+CGG | - | chr4_1:33547120-33547139 | None:intergenic | 75.0% | |
CCGCCGCTCACCCACCTCCA+CGG | + | chr4_1:33547117-33547136 | Msa0544670:CDS | 75.0% | |
CGGCCGTGGAGGTGGGTGAG+CGG | - | chr4_1:33547123-33547142 | None:intergenic | 75.0% | |
CCCGTAGCCGGAGCCACGAC+TGG | + | chr4_1:33547221-33547240 | Msa0544670:CDS | 75.0% | |
CTGCCCTTTCGCCCACCCGG+GGG | + | chr4_1:33547249-33547268 | Msa0544670:CDS | 75.0% | |
! | GGCGTGCCTTTTCCCCCGGG+TGG | - | chr4_1:33547264-33547283 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 33547019 | 33547948 | 33547019 | ID=Msa0544670;Name=Msa0544670 |
chr4_1 | mRNA | 33547019 | 33547948 | 33547019 | ID=Msa0544670-mRNA-1;Parent=Msa0544670;Name=Msa0544670-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|309 |
chr4_1 | exon | 33547019 | 33547948 | 33547019 | ID=Msa0544670-mRNA-1:exon:8562;Parent=Msa0544670-mRNA-1 |
chr4_1 | CDS | 33547019 | 33547948 | 33547019 | ID=Msa0544670-mRNA-1:cds;Parent=Msa0544670-mRNA-1 |
Gene Sequence |
Protein sequence |