AlfalfaGEDB | Msa0544920

M. sativa cultivar zhongmu-4 / Msa0544920

KEGG: K12412
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0544920	XP_013455733.1	89.787	235	23	1	1	235	1	234	1.15e-140	403

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0544920	sp\|O64703\|AGL29_ARATH	35.659	129	75	4	9	130	2	129	4.06e-15	73.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0544920	A0A072UJ33	89.787	235	23	1	1	235	1	234	5.51e-141	403

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0544920	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0544920	MtrunA17_Chr4g0025531	89.787	235	23	1	1	235	1	234	1.06e-144	403
Msa0544920	MtrunA17_Chr3g0135891	51.969	127	49	3	106	220	16	142	3.48e-31	112
Msa0544920	MtrunA17_Chr5g0422421	28.634	227	111	8	1	205	1	198	4.88e-17	77.4
Msa0544920	MtrunA17_Chr1g0206721	31.098	164	96	4	1	150	1	161	1.02e-16	76.6
Msa0544920	MtrunA17_Chr3g0119901	44.706	85	46	1	1	85	1	84	2.07e-16	75.1
Msa0544920	MtrunA17_Chr1g0208561	30.323	155	96	4	1	143	1	155	2.16e-16	75.5
Msa0544920	MtrunA17_Chr8g0379021	31.410	156	99	2	4	151	7	162	3.83e-16	73.6
Msa0544920	MtrunA17_Chr3g0089141	30.323	155	96	4	1	143	1	155	4.40e-16	74.7
Msa0544920	MtrunA17_Chr1g0149391	28.866	194	115	7	1	182	1	183	5.71e-16	74.3
Msa0544920	MtrunA17_Chr1g0206701	32.609	138	78	3	1	126	1	135	6.92e-16	74.3

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0544920	AT4G36590.1	50.000	68	34	0	5	72	3	70	1.72e-17	79.3
Msa0544920	AT1G29962.1	46.250	80	42	1	1	80	1	79	1.54e-16	75.5
Msa0544920	AT2G34440.1	35.659	129	75	4	9	130	2	129	4.12e-16	73.9
Msa0544920	AT2G24840.1	43.750	80	45	0	7	86	61	140	1.05e-15	74.7
Msa0544920	AT5G60440.1	28.293	205	119	6	5	200	3	188	2.19e-14	71.2
Msa0544920	AT1G28460.1	45.455	77	41	1	1	77	1	76	5.07e-14	68.6
Msa0544920	AT3G04100.1	37.931	87	51	1	2	88	7	90	1.37e-12	65.1
Msa0544920	AT1G01530.1	32.710	107	68	1	5	107	3	109	1.79e-12	65.5
Msa0544920	AT1G28450.1	41.250	80	46	1	1	80	1	79	8.82e-12	62.4
Msa0544920	AT1G65360.1	43.333	60	34	0	9	68	7	66	9.75e-12	63.2

Showing 1 to 10 of 10 entries

Previous1Next

Find 43 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTGGAATTTACAACA+AGG	0.729615	4_1:-34201528	Msa0544920:CDS
AACACCAAAGATCATGAAGT+TGG	0.566706	4_1:-34200945	Msa0544920:CDS
AAGATGTACACATACCATGA+GGG	0.689701	4_1:+34201135	None:intergenic
AAGCATGAGAATATCAACTG+AGG	0.718686	4_1:+34201478	None:intergenic
ACACAAGGAGTCAACCTTAT+TGG	0.301989	4_1:-34200559	Msa0544920:CDS
ACCAATGTCTTGAAAACTGG+AGG	0.591573	4_1:-34201167	Msa0544920:CDS
AGCGGAATAGGATATGGAAG+TGG	0.601533	4_1:-34200532	Msa0544920:CDS
AGTTGGAAAGTTCTGGATAT+TGG	0.382288	4_1:-34201265	Msa0544920:CDS
ATAACCAATGTCTTGAAAAC+TGG	0.328346	4_1:-34201170	Msa0544920:CDS
ATCATTTCCTCTTCCATTGA+AGG	0.330256	4_1:+34201377	None:intergenic

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTATTTACGACAGCAACTA+AGG	+	chr4_1:34200931-34200950	None:intergenic	30.0%
ATAACCAATGTCTTGAAAAC+TGG	-	chr4_1:34200954-34200973	Msa0544920:CDS	30.0%
AATGACGTCAAATGATTTCA+TGG	-	chr4_1:34201043-34201062	Msa0544920:intron	30.0%
CTAGAGATATTTGATGTGTT+GGG	+	chr4_1:34201325-34201344	None:intergenic	30.0%
TCTAGAGATATTTGATGTGT+TGG	+	chr4_1:34201326-34201345	None:intergenic	30.0%
TTATCCAAAAGGTAAAGGTA+TGG	-	chr4_1:34201507-34201526	Msa0544920:CDS	30.0%
TTTATTTACGACAGCAACTA+AGG	+	chr4_1:34200931-34200950	None:intergenic	30.0%
ATAACCAATGTCTTGAAAAC+TGG	-	chr4_1:34200954-34200973	Msa0544920:CDS	30.0%
AATGACGTCAAATGATTTCA+TGG	-	chr4_1:34201043-34201062	Msa0544920:intron	30.0%
CTAGAGATATTTGATGTGTT+GGG	+	chr4_1:34201325-34201344	None:intergenic	30.0%

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	34200504	34201642	34200504	ID=Msa0544920;Name=Msa0544920
chr4_1	mRNA	34200504	34201642	34200504	ID=Msa0544920-mRNA-1;Parent=Msa0544920;Name=Msa0544920-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|3\|0\|235
chr4_1	exon	34201150	34201642	34201150	ID=Msa0544920-mRNA-1:exon:8723;Parent=Msa0544920-mRNA-1
chr4_1	exon	34200940	34201029	34200940	ID=Msa0544920-mRNA-1:exon:8722;Parent=Msa0544920-mRNA-1
chr4_1	exon	34200504	34200628	34200504	ID=Msa0544920-mRNA-1:exon:8721;Parent=Msa0544920-mRNA-1
chr4_1	CDS	34201150	34201642	34201150	ID=Msa0544920-mRNA-1:cds;Parent=Msa0544920-mRNA-1
chr4_1	CDS	34200940	34201029	34200940	ID=Msa0544920-mRNA-1:cds;Parent=Msa0544920-mRNA-1
chr4_1	CDS	34200504	34200628	34200504	ID=Msa0544920-mRNA-1:cds;Parent=Msa0544920-mRNA-1

Gene Sequence

>Msa0544920

ATGGCGCCGAAGAGGTCATCAAAAGGAAAACAAAAAATTGAGTTGAAAAAAATTGAGAAAAAGGATGATCTCTTTGTTGCATTTACAACGAGAAAGGCTGGAATTTACAACAAGGCCTCCGAGTTAACAACACTTTCAGGGGCCTCAGTTGATATTCTCATGCTTTCTCCAACGGGAAAACCATTTTGTTATGGAAACCCATCTTCTGAATCTATAACAAAAACTAGTTTGAAGGATGAAAATCCTTCAATGGAAGAGGAAATGATGAAACCGGAGATTATAGAGCAAAATGAAAAAAATGATGATCTTTTGGATAAAAAGCATGTTGCGGAAGCACAACGTAAAAATTTGAAGAAGTTGGAAAGTTCTGGATATTGGTCGATAAAAGAGGACCAATATGATCAAGTGAAAGAAATTGACAAATCCTTAGTTGCTGTCGTAAATAAATTGATAACCAATGTCTTGAAAACTGGAGGAGAGATTGACCCTCATGCAATTTCTACCATTGAGGAACTGAATGGAGTCAAAACAAATCCTTCTTTTGTCTTTGAGGACAACACCAAAGATCATGAAGTTGGTGCAAGTAAAGGTATGGTTGCTAAAGCCTCTCAAGATATAGCTACAAAAAAAACACAAGGAGTCAACCTTATTGGTGTAAGCGGAATAGGATATGGAAGTGGTGTTGATCATGCTTCTCCAGATATATGA

Protein sequence

>Msa0544920

MAPKRSSKGKQKIELKKIEKKDDLFVAFTTRKAGIYNKASELTTLSGASVDILMLSPTGKPFCYGNPSSESITKTSLKDENPSMEEEMMKPEIIEQNEKNDDLLDKKHVAEAQRKNLKKLESSGYWSIKEDQYDQVKEIDKSLVAVVNKLITNVLKTGGEIDPHAISTIEELNGVKTNPSFVFEDNTKDHEVGASKGMVAKASQDIATKKTQGVNLIGVSGIGYGSGVDHASPDI*