Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544920 | XP_013455733.1 | 89.787 | 235 | 23 | 1 | 1 | 235 | 1 | 234 | 1.15e-140 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544920 | sp|O64703|AGL29_ARATH | 35.659 | 129 | 75 | 4 | 9 | 130 | 2 | 129 | 4.06e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544920 | A0A072UJ33 | 89.787 | 235 | 23 | 1 | 1 | 235 | 1 | 234 | 5.51e-141 | 403 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0544920 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544920 | MtrunA17_Chr4g0025531 | 89.787 | 235 | 23 | 1 | 1 | 235 | 1 | 234 | 1.06e-144 | 403 |
| Msa0544920 | MtrunA17_Chr3g0135891 | 51.969 | 127 | 49 | 3 | 106 | 220 | 16 | 142 | 3.48e-31 | 112 |
| Msa0544920 | MtrunA17_Chr5g0422421 | 28.634 | 227 | 111 | 8 | 1 | 205 | 1 | 198 | 4.88e-17 | 77.4 |
| Msa0544920 | MtrunA17_Chr1g0206721 | 31.098 | 164 | 96 | 4 | 1 | 150 | 1 | 161 | 1.02e-16 | 76.6 |
| Msa0544920 | MtrunA17_Chr3g0119901 | 44.706 | 85 | 46 | 1 | 1 | 85 | 1 | 84 | 2.07e-16 | 75.1 |
| Msa0544920 | MtrunA17_Chr1g0208561 | 30.323 | 155 | 96 | 4 | 1 | 143 | 1 | 155 | 2.16e-16 | 75.5 |
| Msa0544920 | MtrunA17_Chr8g0379021 | 31.410 | 156 | 99 | 2 | 4 | 151 | 7 | 162 | 3.83e-16 | 73.6 |
| Msa0544920 | MtrunA17_Chr3g0089141 | 30.323 | 155 | 96 | 4 | 1 | 143 | 1 | 155 | 4.40e-16 | 74.7 |
| Msa0544920 | MtrunA17_Chr1g0149391 | 28.866 | 194 | 115 | 7 | 1 | 182 | 1 | 183 | 5.71e-16 | 74.3 |
| Msa0544920 | MtrunA17_Chr1g0206701 | 32.609 | 138 | 78 | 3 | 1 | 126 | 1 | 135 | 6.92e-16 | 74.3 |
| Msa0544920 | MtrunA17_Chr2g0292791 | 33.333 | 135 | 81 | 3 | 1 | 126 | 1 | 135 | 1.03e-15 | 73.9 |
| Msa0544920 | MtrunA17_Chr3g0085241 | 45.122 | 82 | 44 | 1 | 4 | 85 | 36 | 116 | 1.08e-15 | 73.9 |
| Msa0544920 | MtrunA17_Chr8g0355091 | 31.852 | 135 | 83 | 3 | 1 | 126 | 1 | 135 | 1.67e-15 | 73.2 |
| Msa0544920 | MtrunA17_Chr1g0206991 | 31.707 | 164 | 101 | 5 | 1 | 153 | 1 | 164 | 2.02e-15 | 72.0 |
| Msa0544920 | MtrunA17_Chr3g0099421 | 32.667 | 150 | 85 | 3 | 1 | 137 | 26 | 172 | 2.10e-15 | 73.2 |
| Msa0544920 | MtrunA17_Chr1g0188671 | 40.244 | 82 | 49 | 0 | 1 | 82 | 39 | 120 | 2.59e-15 | 73.2 |
| Msa0544920 | MtrunA17_Chr3g0099411 | 40.244 | 82 | 49 | 0 | 1 | 82 | 1 | 82 | 3.23e-15 | 72.0 |
| Msa0544920 | MtrunA17_Chr2g0317481 | 29.710 | 138 | 88 | 3 | 1 | 129 | 1 | 138 | 3.82e-15 | 72.0 |
| Msa0544920 | MtrunA17_Chr1g0208581 | 43.056 | 72 | 41 | 0 | 1 | 72 | 1 | 72 | 3.97e-15 | 72.0 |
| Msa0544920 | MtrunA17_Chr2g0317451 | 29.710 | 138 | 88 | 3 | 1 | 129 | 1 | 138 | 4.10e-15 | 72.0 |
| Msa0544920 | MtrunA17_Chr2g0333981 | 29.747 | 158 | 99 | 4 | 4 | 151 | 7 | 162 | 4.58e-15 | 70.9 |
| Msa0544920 | MtrunA17_Chr5g0422941 | 26.786 | 168 | 103 | 4 | 1 | 156 | 1 | 160 | 8.22e-15 | 71.2 |
| Msa0544920 | MtrunA17_Chr5g0419601 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 3.86e-14 | 69.3 |
| Msa0544920 | MtrunA17_Chr2g0325971 | 29.747 | 158 | 93 | 5 | 1 | 143 | 1 | 155 | 4.29e-14 | 69.3 |
| Msa0544920 | MtrunA17_Chr1g0187361 | 27.919 | 197 | 113 | 5 | 1 | 182 | 1 | 183 | 1.04e-13 | 68.2 |
| Msa0544920 | MtrunA17_Chr4g0052081 | 39.130 | 69 | 42 | 0 | 9 | 77 | 2 | 70 | 1.48e-13 | 66.6 |
| Msa0544920 | MtrunA17_Chr4g0052061 | 36.145 | 83 | 53 | 0 | 9 | 91 | 2 | 84 | 2.03e-13 | 65.9 |
| Msa0544920 | MtrunA17_Chr2g0300421 | 32.653 | 98 | 63 | 1 | 1 | 98 | 1 | 95 | 4.84e-13 | 65.1 |
| Msa0544920 | MtrunA17_Chr3g0089151 | 37.500 | 72 | 45 | 0 | 1 | 72 | 1 | 72 | 8.35e-13 | 63.5 |
| Msa0544920 | MtrunA17_Chr2g0300441 | 25.904 | 166 | 106 | 4 | 1 | 152 | 1 | 163 | 2.09e-12 | 64.7 |
| Msa0544920 | MtrunA17_Chr8g0356071 | 28.947 | 114 | 68 | 2 | 9 | 116 | 2 | 108 | 1.05e-11 | 61.2 |
| Msa0544920 | MtrunA17_Chr3g0111841 | 43.103 | 58 | 33 | 0 | 15 | 72 | 2 | 59 | 5.35e-11 | 57.0 |
| Msa0544920 | MtrunA17_Chr8g0376821 | 33.750 | 80 | 52 | 1 | 9 | 87 | 2 | 81 | 5.61e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544920 | AT4G36590.1 | 50.000 | 68 | 34 | 0 | 5 | 72 | 3 | 70 | 1.72e-17 | 79.3 |
| Msa0544920 | AT1G29962.1 | 46.250 | 80 | 42 | 1 | 1 | 80 | 1 | 79 | 1.54e-16 | 75.5 |
| Msa0544920 | AT2G34440.1 | 35.659 | 129 | 75 | 4 | 9 | 130 | 2 | 129 | 4.12e-16 | 73.9 |
| Msa0544920 | AT2G24840.1 | 43.750 | 80 | 45 | 0 | 7 | 86 | 61 | 140 | 1.05e-15 | 74.7 |
| Msa0544920 | AT5G60440.1 | 28.293 | 205 | 119 | 6 | 5 | 200 | 3 | 188 | 2.19e-14 | 71.2 |
| Msa0544920 | AT1G28460.1 | 45.455 | 77 | 41 | 1 | 1 | 77 | 1 | 76 | 5.07e-14 | 68.6 |
| Msa0544920 | AT3G04100.1 | 37.931 | 87 | 51 | 1 | 2 | 88 | 7 | 90 | 1.37e-12 | 65.1 |
| Msa0544920 | AT1G01530.1 | 32.710 | 107 | 68 | 1 | 5 | 107 | 3 | 109 | 1.79e-12 | 65.5 |
| Msa0544920 | AT1G28450.1 | 41.250 | 80 | 46 | 1 | 1 | 80 | 1 | 79 | 8.82e-12 | 62.4 |
| Msa0544920 | AT1G65360.1 | 43.333 | 60 | 34 | 0 | 9 | 68 | 7 | 66 | 9.75e-12 | 63.2 |
Find 43 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGAGTTAACAACACTTTC+AGG | 0.165743 | 4_1:-34201503 | Msa0544920:CDS |
| TTGAAGAAGTTGGAAAGTTC+TGG | 0.270990 | 4_1:-34201272 | Msa0544920:CDS |
| TGCACCAACTTCATGATCTT+TGG | 0.281401 | 4_1:+34200941 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.301989 | 4_1:-34200559 | Msa0544920:CDS |
| GATGGGTTTCCATAACAAAA+TGG | 0.311638 | 4_1:+34201440 | None:intergenic |
| ATAACCAATGTCTTGAAAAC+TGG | 0.328346 | 4_1:-34201170 | Msa0544920:CDS |
| ATCATTTCCTCTTCCATTGA+AGG | 0.330256 | 4_1:+34201377 | None:intergenic |
| CTTATTGGTGTAAGCGGAAT+AGG | 0.333563 | 4_1:-34200544 | Msa0544920:CDS |
| CTTCTACCATGTCATATATC+TGG | 0.335672 | 4_1:+34200493 | None:intergenic |
| CTATTCCGCTTACACCAATA+AGG | 0.352863 | 4_1:+34200545 | None:intergenic |
| TTTCTTTCACTTGATCATAT+TGG | 0.353442 | 4_1:+34201228 | None:intergenic |
| AGTTGGAAAGTTCTGGATAT+TGG | 0.382288 | 4_1:-34201265 | Msa0544920:CDS |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.403336 | 4_1:-34201467 | Msa0544920:CDS |
| TTTATTTACGACAGCAACTA+AGG | 0.422183 | 4_1:+34201196 | None:intergenic |
| TTTGTTATAGATTCAGAAGA+TGG | 0.427015 | 4_1:+34201422 | None:intergenic |
| GGAAGAGGAAATGATGAAAC+CGG | 0.442189 | 4_1:-34201369 | Msa0544920:CDS |
| CCGAGTTAACAACACTTTCA+GGG | 0.450892 | 4_1:-34201502 | Msa0544920:CDS |
| CCCTGAAAGTGTTGTTAACT+CGG | 0.457016 | 4_1:+34201502 | None:intergenic |
| CGTAGCAATTTCTACCATTG+AGG | 0.467584 | 4_1:-34201012 | Msa0544920:intron |
| GAAGGATGAAAATCCTTCAA+TGG | 0.468568 | 4_1:-34201390 | Msa0544920:CDS |
| GACTCCATTCAGTTCCTCAA+TGG | 0.472764 | 4_1:+34200998 | None:intergenic |
| GGTGTAAGCGGAATAGGATA+TGG | 0.475102 | 4_1:-34200538 | Msa0544920:CDS |
| TGTTGCATTTACAACGAGAA+AGG | 0.475609 | 4_1:-34201546 | Msa0544920:CDS |
| TATTCTCATGCTTTCTCCAA+CGG | 0.502164 | 4_1:-34201468 | Msa0544920:CDS |
| TGAAAATCCTTCAATGGAAG+AGG | 0.510231 | 4_1:-34201384 | Msa0544920:CDS |
| TTGTTATAGATTCAGAAGAT+GGG | 0.510327 | 4_1:+34201423 | None:intergenic |
| TCTACCATTGAGGAACTGAA+TGG | 0.512244 | 4_1:-34201002 | Msa0544920:CDS |
| TTGTCCTCAAAGACAAAAGA+AGG | 0.512656 | 4_1:+34200966 | None:intergenic |
| GCATTTACAACGAGAAAGGC+TGG | 0.523590 | 4_1:-34201542 | Msa0544920:CDS |
| TTATCCAAAAGGTAAAGGTA+TGG | 0.531949 | 4_1:-34200617 | Msa0544920:intron |
| GCGCCGAAGAGGTCATCAAA+AGG | 0.555723 | 4_1:-34201617 | Msa0544920:CDS |
| AACACCAAAGATCATGAAGT+TGG | 0.566706 | 4_1:-34200945 | Msa0544920:CDS |
| TGGATATTGGTCGATAAAAG+AGG | 0.572226 | 4_1:-34201252 | Msa0544920:CDS |
| GTCAACCTTATTGGTGTAAG+CGG | 0.584588 | 4_1:-34200550 | Msa0544920:CDS |
| CGAGTTAACAACACTTTCAG+GGG | 0.590811 | 4_1:-34201501 | Msa0544920:CDS |
| ACCAATGTCTTGAAAACTGG+AGG | 0.591573 | 4_1:-34201167 | Msa0544920:CDS |
| AGCGGAATAGGATATGGAAG+TGG | 0.601533 | 4_1:-34200532 | Msa0544920:CDS |
| GAGTAAGAATGGCGCCGAAG+AGG | 0.609055 | 4_1:-34201628 | None:intergenic |
| GGAGGAGAGATTGACCCTCA+TGG | 0.634950 | 4_1:-34201149 | Msa0544920:intron |
| AAGATGTACACATACCATGA+GGG | 0.689701 | 4_1:+34201135 | None:intergenic |
| TGAAAGTGTTGTTAACTCGG+AGG | 0.701093 | 4_1:+34201505 | None:intergenic |
| AAGCATGAGAATATCAACTG+AGG | 0.718686 | 4_1:+34201478 | None:intergenic |
| AAAGGCTGGAATTTACAACA+AGG | 0.729615 | 4_1:-34201528 | Msa0544920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAAATAATTAGGTAAAA+AGG | + | chr4_1:34201072-34201091 | None:intergenic | 15.0% |
| !! | CAATACATAATATATATGTT+AGG | + | chr4_1:34201460-34201479 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAATCAATGAA+AGG | + | chr4_1:34201488-34201507 | None:intergenic | 15.0% |
| !!! | TTCAATTTTTTTTATCCAAA+AGG | - | chr4_1:34201496-34201515 | Msa0544920:CDS | 15.0% |
| !! | CTTAAAATAATTAGGTAAAA+AGG | + | chr4_1:34201072-34201091 | None:intergenic | 15.0% |
| !! | CAATACATAATATATATGTT+AGG | + | chr4_1:34201460-34201479 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAATCAATGAA+AGG | + | chr4_1:34201488-34201507 | None:intergenic | 15.0% |
| !!! | TTCAATTTTTTTTATCCAAA+AGG | - | chr4_1:34201496-34201515 | Msa0544920:CDS | 15.0% |
| !! | GTTGAAAAAAATTGAGAAAA+AGG | - | chr4_1:34200545-34200564 | Msa0544920:CDS | 20.0% |
| !!! | TATAACAAAAACTAGTTTGA+AGG | - | chr4_1:34200716-34200735 | Msa0544920:intron | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | - | chr4_1:34200794-34200813 | Msa0544920:intron | 20.0% |
| !! | CAGATTCACTTAAAATAATT+AGG | + | chr4_1:34201080-34201099 | None:intergenic | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | - | chr4_1:34201078-34201097 | Msa0544920:intron | 20.0% |
| !!! | TTTTTTTATCCAAAAGGTAA+AGG | - | chr4_1:34201502-34201521 | Msa0544920:CDS | 20.0% |
| !! | GTTGAAAAAAATTGAGAAAA+AGG | - | chr4_1:34200545-34200564 | Msa0544920:CDS | 20.0% |
| !!! | TATAACAAAAACTAGTTTGA+AGG | - | chr4_1:34200716-34200735 | Msa0544920:intron | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | - | chr4_1:34200794-34200813 | Msa0544920:intron | 20.0% |
| !! | CAGATTCACTTAAAATAATT+AGG | + | chr4_1:34201080-34201099 | None:intergenic | 20.0% |
| !!! | CTAATTATTTTAAGTGAATC+TGG | - | chr4_1:34201078-34201097 | Msa0544920:intron | 20.0% |
| !!! | TTTTTTTATCCAAAAGGTAA+AGG | - | chr4_1:34201502-34201521 | Msa0544920:CDS | 20.0% |
| ! | TTGTTATAGATTCAGAAGAT+GGG | + | chr4_1:34200704-34200723 | None:intergenic | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr4_1:34200705-34200724 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGAAGT+TGG | - | chr4_1:34200842-34200861 | Msa0544920:intron | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | + | chr4_1:34200899-34200918 | None:intergenic | 25.0% |
| !! | TTTTTCATGAAATATCCTAG+CGG | - | chr4_1:34201244-34201263 | Msa0544920:CDS | 25.0% |
| ! | TCTTCTTAATTTCCATTACT+AGG | - | chr4_1:34201397-34201416 | Msa0544920:CDS | 25.0% |
| ! | ATAGCTACAAAAAAAACACA+AGG | - | chr4_1:34201550-34201569 | Msa0544920:CDS | 25.0% |
| ! | TTGTTATAGATTCAGAAGAT+GGG | + | chr4_1:34200704-34200723 | None:intergenic | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | + | chr4_1:34200705-34200724 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGAAGT+TGG | - | chr4_1:34200842-34200861 | Msa0544920:intron | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | + | chr4_1:34200899-34200918 | None:intergenic | 25.0% |
| !! | TTTTTCATGAAATATCCTAG+CGG | - | chr4_1:34201244-34201263 | Msa0544920:CDS | 25.0% |
| ! | TCTTCTTAATTTCCATTACT+AGG | - | chr4_1:34201397-34201416 | Msa0544920:CDS | 25.0% |
| ! | ATAGCTACAAAAAAAACACA+AGG | - | chr4_1:34201550-34201569 | Msa0544920:CDS | 25.0% |
| ! | TCATTTTGCTCTATAATCTC+CGG | + | chr4_1:34200777-34200796 | None:intergenic | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | - | chr4_1:34200812-34200831 | Msa0544920:intron | 30.0% |
| TTTATTTACGACAGCAACTA+AGG | + | chr4_1:34200931-34200950 | None:intergenic | 30.0% | |
| ATAACCAATGTCTTGAAAAC+TGG | - | chr4_1:34200954-34200973 | Msa0544920:CDS | 30.0% | |
| AATGACGTCAAATGATTTCA+TGG | - | chr4_1:34201043-34201062 | Msa0544920:intron | 30.0% | |
| ! | AAATCCTTCTTTTGTCTTTG+AGG | - | chr4_1:34201154-34201173 | Msa0544920:CDS | 30.0% |
| CTAGAGATATTTGATGTGTT+GGG | + | chr4_1:34201325-34201344 | None:intergenic | 30.0% | |
| TCTAGAGATATTTGATGTGT+TGG | + | chr4_1:34201326-34201345 | None:intergenic | 30.0% | |
| !! | TACCATTTAAGTTGCACTTA+TGG | - | chr4_1:34201355-34201374 | Msa0544920:CDS | 30.0% |
| !! | ACCATTTAAGTTGCACTTAT+GGG | - | chr4_1:34201356-34201375 | Msa0544920:CDS | 30.0% |
| TTATCCAAAAGGTAAAGGTA+TGG | - | chr4_1:34201507-34201526 | Msa0544920:CDS | 30.0% | |
| ! | TTTTGTAGCTATATCTTGAG+AGG | + | chr4_1:34201542-34201561 | None:intergenic | 30.0% |
| ! | TCATTTTGCTCTATAATCTC+CGG | + | chr4_1:34200777-34200796 | None:intergenic | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | - | chr4_1:34200812-34200831 | Msa0544920:intron | 30.0% |
| TTTATTTACGACAGCAACTA+AGG | + | chr4_1:34200931-34200950 | None:intergenic | 30.0% | |
| ATAACCAATGTCTTGAAAAC+TGG | - | chr4_1:34200954-34200973 | Msa0544920:CDS | 30.0% | |
| AATGACGTCAAATGATTTCA+TGG | - | chr4_1:34201043-34201062 | Msa0544920:intron | 30.0% | |
| ! | AAATCCTTCTTTTGTCTTTG+AGG | - | chr4_1:34201154-34201173 | Msa0544920:CDS | 30.0% |
| CTAGAGATATTTGATGTGTT+GGG | + | chr4_1:34201325-34201344 | None:intergenic | 30.0% | |
| TCTAGAGATATTTGATGTGT+TGG | + | chr4_1:34201326-34201345 | None:intergenic | 30.0% | |
| !! | TACCATTTAAGTTGCACTTA+TGG | - | chr4_1:34201355-34201374 | Msa0544920:CDS | 30.0% |
| !! | ACCATTTAAGTTGCACTTAT+GGG | - | chr4_1:34201356-34201375 | Msa0544920:CDS | 30.0% |
| TTATCCAAAAGGTAAAGGTA+TGG | - | chr4_1:34201507-34201526 | Msa0544920:CDS | 30.0% | |
| ! | TTTTGTAGCTATATCTTGAG+AGG | + | chr4_1:34201542-34201561 | None:intergenic | 30.0% |
| !! | TTTCCTTTTGATGACCTCTT+CGG | + | chr4_1:34200513-34200532 | None:intergenic | 35.0% |
| TGTTGCATTTACAACGAGAA+AGG | - | chr4_1:34200578-34200597 | Msa0544920:CDS | 35.0% | |
| AAAGGCTGGAATTTACAACA+AGG | - | chr4_1:34200596-34200615 | Msa0544920:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr4_1:34200649-34200668 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr4_1:34200656-34200675 | Msa0544920:intron | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | + | chr4_1:34200675-34200694 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | - | chr4_1:34200675-34200694 | Msa0544920:intron | 35.0% |
| ! | GATGGGTTTCCATAACAAAA+TGG | + | chr4_1:34200687-34200706 | None:intergenic | 35.0% |
| GAAGGATGAAAATCCTTCAA+TGG | - | chr4_1:34200734-34200753 | Msa0544920:intron | 35.0% | |
| TGAAAATCCTTCAATGGAAG+AGG | - | chr4_1:34200740-34200759 | Msa0544920:intron | 35.0% | |
| ATCATTTCCTCTTCCATTGA+AGG | + | chr4_1:34200750-34200769 | None:intergenic | 35.0% | |
| TTGAAGAAGTTGGAAAGTTC+TGG | - | chr4_1:34200852-34200871 | Msa0544920:intron | 35.0% | |
| !! | AGTTGGAAAGTTCTGGATAT+TGG | - | chr4_1:34200859-34200878 | Msa0544920:intron | 35.0% |
| TGGATATTGGTCGATAAAAG+AGG | - | chr4_1:34200872-34200891 | Msa0544920:intron | 35.0% | |
| AAGATGTACACATACCATGA+GGG | + | chr4_1:34200992-34201011 | None:intergenic | 35.0% | |
| TTGTCCTCAAAGACAAAAGA+AGG | + | chr4_1:34201161-34201180 | None:intergenic | 35.0% | |
| AACACCAAAGATCATGAAGT+TGG | - | chr4_1:34201179-34201198 | Msa0544920:CDS | 35.0% | |
| TAGACAAGATCAGATGTTGT+TGG | - | chr4_1:34201289-34201308 | Msa0544920:CDS | 35.0% | |
| TCCCATAAGTGCAACTTAAA+TGG | + | chr4_1:34201360-34201379 | None:intergenic | 35.0% | |
| AATGTTTGCATGCCTAGTAA+TGG | + | chr4_1:34201412-34201431 | None:intergenic | 35.0% | |
| !! | TTTCCTTTTGATGACCTCTT+CGG | + | chr4_1:34200513-34200532 | None:intergenic | 35.0% |
| TGTTGCATTTACAACGAGAA+AGG | - | chr4_1:34200578-34200597 | Msa0544920:CDS | 35.0% | |
| AAAGGCTGGAATTTACAACA+AGG | - | chr4_1:34200596-34200615 | Msa0544920:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | + | chr4_1:34200649-34200668 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr4_1:34200656-34200675 | Msa0544920:intron | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | + | chr4_1:34200675-34200694 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | - | chr4_1:34200675-34200694 | Msa0544920:intron | 35.0% |
| ! | GATGGGTTTCCATAACAAAA+TGG | + | chr4_1:34200687-34200706 | None:intergenic | 35.0% |
| GAAGGATGAAAATCCTTCAA+TGG | - | chr4_1:34200734-34200753 | Msa0544920:intron | 35.0% | |
| TGAAAATCCTTCAATGGAAG+AGG | - | chr4_1:34200740-34200759 | Msa0544920:intron | 35.0% | |
| ATCATTTCCTCTTCCATTGA+AGG | + | chr4_1:34200750-34200769 | None:intergenic | 35.0% | |
| TTGAAGAAGTTGGAAAGTTC+TGG | - | chr4_1:34200852-34200871 | Msa0544920:intron | 35.0% | |
| !! | AGTTGGAAAGTTCTGGATAT+TGG | - | chr4_1:34200859-34200878 | Msa0544920:intron | 35.0% |
| TGGATATTGGTCGATAAAAG+AGG | - | chr4_1:34200872-34200891 | Msa0544920:intron | 35.0% | |
| AAGATGTACACATACCATGA+GGG | + | chr4_1:34200992-34201011 | None:intergenic | 35.0% | |
| TTGTCCTCAAAGACAAAAGA+AGG | + | chr4_1:34201161-34201180 | None:intergenic | 35.0% | |
| AACACCAAAGATCATGAAGT+TGG | - | chr4_1:34201179-34201198 | Msa0544920:CDS | 35.0% | |
| TAGACAAGATCAGATGTTGT+TGG | - | chr4_1:34201289-34201308 | Msa0544920:CDS | 35.0% | |
| TCCCATAAGTGCAACTTAAA+TGG | + | chr4_1:34201360-34201379 | None:intergenic | 35.0% | |
| AATGTTTGCATGCCTAGTAA+TGG | + | chr4_1:34201412-34201431 | None:intergenic | 35.0% | |
| !! | TGAAAGTGTTGTTAACTCGG+AGG | + | chr4_1:34200622-34200641 | None:intergenic | 40.0% |
| TCCGAGTTAACAACACTTTC+AGG | - | chr4_1:34200621-34200640 | Msa0544920:intron | 40.0% | |
| !! | CCCTGAAAGTGTTGTTAACT+CGG | + | chr4_1:34200625-34200644 | None:intergenic | 40.0% |
| CCGAGTTAACAACACTTTCA+GGG | - | chr4_1:34200622-34200641 | Msa0544920:intron | 40.0% | |
| CGAGTTAACAACACTTTCAG+GGG | - | chr4_1:34200623-34200642 | Msa0544920:intron | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr4_1:34200657-34200676 | Msa0544920:intron | 40.0% | |
| GGAAGAGGAAATGATGAAAC+CGG | - | chr4_1:34200755-34200774 | Msa0544920:intron | 40.0% | |
| ACCAATGTCTTGAAAACTGG+AGG | - | chr4_1:34200957-34200976 | Msa0544920:CDS | 40.0% | |
| !! | TCCTCCAGTTTTCAAGACAT+TGG | + | chr4_1:34200961-34200980 | None:intergenic | 40.0% |
| CAAGATGTACACATACCATG+AGG | + | chr4_1:34200993-34201012 | None:intergenic | 40.0% | |
| CGTAGCAATTTCTACCATTG+AGG | - | chr4_1:34201112-34201131 | Msa0544920:intron | 40.0% | |
| TCTACCATTGAGGAACTGAA+TGG | - | chr4_1:34201122-34201141 | Msa0544920:intron | 40.0% | |
| TGCACCAACTTCATGATCTT+TGG | + | chr4_1:34201186-34201205 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | + | chr4_1:34201514-34201533 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr4_1:34201565-34201584 | Msa0544920:CDS | 40.0% | |
| GTCAACCTTATTGGTGTAAG+CGG | - | chr4_1:34201574-34201593 | Msa0544920:CDS | 40.0% | |
| CTATTCCGCTTACACCAATA+AGG | + | chr4_1:34201582-34201601 | None:intergenic | 40.0% | |
| CTTATTGGTGTAAGCGGAAT+AGG | - | chr4_1:34201580-34201599 | Msa0544920:CDS | 40.0% | |
| !! | TGAAAGTGTTGTTAACTCGG+AGG | + | chr4_1:34200622-34200641 | None:intergenic | 40.0% |
| TCCGAGTTAACAACACTTTC+AGG | - | chr4_1:34200621-34200640 | Msa0544920:intron | 40.0% | |
| !! | CCCTGAAAGTGTTGTTAACT+CGG | + | chr4_1:34200625-34200644 | None:intergenic | 40.0% |
| CCGAGTTAACAACACTTTCA+GGG | - | chr4_1:34200622-34200641 | Msa0544920:intron | 40.0% | |
| CGAGTTAACAACACTTTCAG+GGG | - | chr4_1:34200623-34200642 | Msa0544920:intron | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr4_1:34200657-34200676 | Msa0544920:intron | 40.0% | |
| GGAAGAGGAAATGATGAAAC+CGG | - | chr4_1:34200755-34200774 | Msa0544920:intron | 40.0% | |
| ACCAATGTCTTGAAAACTGG+AGG | - | chr4_1:34200957-34200976 | Msa0544920:CDS | 40.0% | |
| !! | TCCTCCAGTTTTCAAGACAT+TGG | + | chr4_1:34200961-34200980 | None:intergenic | 40.0% |
| CAAGATGTACACATACCATG+AGG | + | chr4_1:34200993-34201012 | None:intergenic | 40.0% | |
| CGTAGCAATTTCTACCATTG+AGG | - | chr4_1:34201112-34201131 | Msa0544920:intron | 40.0% | |
| TCTACCATTGAGGAACTGAA+TGG | - | chr4_1:34201122-34201141 | Msa0544920:intron | 40.0% | |
| TGCACCAACTTCATGATCTT+TGG | + | chr4_1:34201186-34201205 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | + | chr4_1:34201514-34201533 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr4_1:34201565-34201584 | Msa0544920:CDS | 40.0% | |
| GTCAACCTTATTGGTGTAAG+CGG | - | chr4_1:34201574-34201593 | Msa0544920:CDS | 40.0% | |
| CTATTCCGCTTACACCAATA+AGG | + | chr4_1:34201582-34201601 | None:intergenic | 40.0% | |
| CTTATTGGTGTAAGCGGAAT+AGG | - | chr4_1:34201580-34201599 | Msa0544920:CDS | 40.0% | |
| GCATTTACAACGAGAAAGGC+TGG | - | chr4_1:34200582-34200601 | Msa0544920:CDS | 45.0% | |
| GACTCCATTCAGTTCCTCAA+TGG | + | chr4_1:34201129-34201148 | None:intergenic | 45.0% | |
| GGTGTAAGCGGAATAGGATA+TGG | - | chr4_1:34201586-34201605 | Msa0544920:CDS | 45.0% | |
| AGCGGAATAGGATATGGAAG+TGG | - | chr4_1:34201592-34201611 | Msa0544920:CDS | 45.0% | |
| GCATTTACAACGAGAAAGGC+TGG | - | chr4_1:34200582-34200601 | Msa0544920:CDS | 45.0% | |
| GACTCCATTCAGTTCCTCAA+TGG | + | chr4_1:34201129-34201148 | None:intergenic | 45.0% | |
| GGTGTAAGCGGAATAGGATA+TGG | - | chr4_1:34201586-34201605 | Msa0544920:CDS | 45.0% | |
| AGCGGAATAGGATATGGAAG+TGG | - | chr4_1:34201592-34201611 | Msa0544920:CDS | 45.0% | |
| ! | AATGTGTGAGTGTTGCCGCT+AGG | + | chr4_1:34201262-34201281 | None:intergenic | 50.0% |
| ! | AATGTGTGAGTGTTGCCGCT+AGG | + | chr4_1:34201262-34201281 | None:intergenic | 50.0% |
| GCGCCGAAGAGGTCATCAAA+AGG | - | chr4_1:34200507-34200526 | Msa0544920:CDS | 55.0% | |
| GGAGGAGAGATTGACCCTCA+TGG | - | chr4_1:34200975-34200994 | Msa0544920:CDS | 55.0% | |
| GCGCCGAAGAGGTCATCAAA+AGG | - | chr4_1:34200507-34200526 | Msa0544920:CDS | 55.0% | |
| GGAGGAGAGATTGACCCTCA+TGG | - | chr4_1:34200975-34200994 | Msa0544920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 34200504 | 34201642 | 34200504 | ID=Msa0544920;Name=Msa0544920 |
| chr4_1 | mRNA | 34200504 | 34201642 | 34200504 | ID=Msa0544920-mRNA-1;Parent=Msa0544920;Name=Msa0544920-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|235 |
| chr4_1 | exon | 34201150 | 34201642 | 34201150 | ID=Msa0544920-mRNA-1:exon:8723;Parent=Msa0544920-mRNA-1 |
| chr4_1 | exon | 34200940 | 34201029 | 34200940 | ID=Msa0544920-mRNA-1:exon:8722;Parent=Msa0544920-mRNA-1 |
| chr4_1 | exon | 34200504 | 34200628 | 34200504 | ID=Msa0544920-mRNA-1:exon:8721;Parent=Msa0544920-mRNA-1 |
| chr4_1 | CDS | 34201150 | 34201642 | 34201150 | ID=Msa0544920-mRNA-1:cds;Parent=Msa0544920-mRNA-1 |
| chr4_1 | CDS | 34200940 | 34201029 | 34200940 | ID=Msa0544920-mRNA-1:cds;Parent=Msa0544920-mRNA-1 |
| chr4_1 | CDS | 34200504 | 34200628 | 34200504 | ID=Msa0544920-mRNA-1:cds;Parent=Msa0544920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
