AlfalfaGEDB | Msa0545220

M. sativa cultivar zhongmu-4 / Msa0545220

KEGG: K06620|K12590
GO: GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032989 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045893 GO:0045935 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051302 GO:0051445 GO:0051446 GO:0051726 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF02319.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545220	XP_003606095.2	96.957	460	14	0	1	460	1	460	0.0	924

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545220	sp\|Q9FV71\|E2FB_ARATH	57.403	439	150	10	19	433	13	438	1.69e-156	454

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545220	A0A396I6V2	96.957	460	14	0	1	460	1	460	0.0	924

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TFs/TRs:

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Gene ID	Type	Classification
Msa0545220	TF	E2F-DP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545220	MtrunA17_Chr4g0025881	96.957	460	14	0	1	460	1	460	0.0	924
Msa0545220	MtrunA17_Chr1g0177351	59.767	430	167	5	19	445	25	451	7.44e-174	496
Msa0545220	MtrunA17_Chr3g0142581	48.264	288	139	3	129	416	93	370	5.45e-84	263
Msa0545220	MtrunA17_Chr4g0059551	46.269	67	36	0	138	204	17	83	6.90e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0545220	AT5G22220.2	57.403	439	150	10	19	433	13	438	1.72e-157	454
Msa0545220	AT5G22220.3	57.175	439	148	11	19	433	13	435	3.84e-155	448
Msa0545220	AT2G36010.1	53.103	435	158	11	19	423	39	457	2.22e-139	409
Msa0545220	AT2G36010.3	53.089	437	157	12	19	423	39	459	5.60e-138	405
Msa0545220	AT2G36010.2	43.515	478	169	14	19	423	39	488	3.50e-104	320
Msa0545220	AT1G47870.1	50.179	279	97	5	137	414	154	391	2.52e-79	252
Msa0545220	AT1G47870.2	50.179	279	97	5	137	414	153	390	2.70e-79	252
Msa0545220	AT5G14960.1	41.892	74	43	0	131	204	6	79	4.48e-12	67.8
Msa0545220	AT3G01330.1	37.647	85	48	1	138	222	21	100	6.18e-11	64.3

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Find 189 sgRNAs with CRISPR-Local

Find 567 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCCCTTTCTCTCCGC+CGG	0.513017	4_1:+35162365	Msa0545220:CDS
AAACTATCATCGGCCTCCCC+TGG	0.512893	4_1:-35165930	None:intergenic
AAAGAACTTGCCCTGCTTCC+AGG	0.295888	4_1:+35166564	Msa0545220:CDS
AAAGTAGAAGTTAATAACGA+GGG	0.614126	4_1:-35170004	None:intergenic
AACAATCACGACTTCGTGAG+TGG	0.509503	4_1:+35167271	Msa0545220:CDS
AACAATTGAGGAACGCCGGT+TGG	0.534246	4_1:+35166247	Msa0545220:CDS
AACATTAAGCATACCTAACA+AGG	0.592586	4_1:-35166921	None:intergenic
AACCTTCAATCCAACCTCGC+AGG	0.568624	4_1:-35167954	None:intergenic
AACTTTGTTAACTTCTGGAC+TGG	0.365621	4_1:-35167155	None:intergenic
AAGAACGCCACTTTCTCTTC+AGG	0.321260	4_1:-35167898	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGTATGTGTTTGGAAAGT+GGG	-	chr4_1:35162192-35162211	None:intergenic	30.0%
TAAGGTGATTTAAGGAACTA+GGG	+	chr4_1:35162543-35162562	Msa0545220:intron	30.0%
TGTTCAGTTATATGAGCTTT+AGG	+	chr4_1:35162896-35162915	Msa0545220:intron	30.0%
GTTCAGTTATATGAGCTTTA+GGG	+	chr4_1:35162897-35162916	Msa0545220:intron	30.0%
AATGGTTTATTTGCAGCTTA+TGG	+	chr4_1:35162932-35162951	Msa0545220:intron	30.0%
GTACTAAACCTAAAGACTAA+GGG	-	chr4_1:35163155-35163174	None:intergenic	30.0%
AGTACTAAACCTAAAGACTA+AGG	-	chr4_1:35163156-35163175	None:intergenic	30.0%
AGTACTTGATCAATGTATTG+AGG	+	chr4_1:35163170-35163189	Msa0545220:intron	30.0%
GTAAGCTCATAAACTAAATG+GGG	-	chr4_1:35163344-35163363	None:intergenic	30.0%
AACCTCATTTAAAAACAACC+AGG	-	chr4_1:35163375-35163394	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	35162096	35170028	35162096	ID=Msa0545220;Name=Msa0545220
chr4_1	mRNA	35162096	35170028	35162096	ID=Msa0545220-mRNA-1;Parent=Msa0545220;Name=Msa0545220-mRNA-1;_AED=0.13;_eAED=0.13;_QI=168\|1\|1\|1\|0.86\|0.75\|16\|455\|460
chr4_1	exon	35162096	35162214	35162096	ID=Msa0545220-mRNA-1:exon:8866;Parent=Msa0545220-mRNA-1
chr4_1	exon	35162235	35162463	35162235	ID=Msa0545220-mRNA-1:exon:8867;Parent=Msa0545220-mRNA-1
chr4_1	exon	35164633	35164822	35164633	ID=Msa0545220-mRNA-1:exon:8868;Parent=Msa0545220-mRNA-1
chr4_1	exon	35165004	35165063	35165004	ID=Msa0545220-mRNA-1:exon:8869;Parent=Msa0545220-mRNA-1
chr4_1	exon	35165565	35165650	35165565	ID=Msa0545220-mRNA-1:exon:8870;Parent=Msa0545220-mRNA-1
chr4_1	exon	35165731	35165819	35165731	ID=Msa0545220-mRNA-1:exon:8871;Parent=Msa0545220-mRNA-1
chr4_1	exon	35165911	35165965	35165911	ID=Msa0545220-mRNA-1:exon:8872;Parent=Msa0545220-mRNA-1
chr4_1	exon	35166230	35166282	35166230	ID=Msa0545220-mRNA-1:exon:8873;Parent=Msa0545220-mRNA-1
chr4_1	exon	35166380	35166430	35166380	ID=Msa0545220-mRNA-1:exon:8874;Parent=Msa0545220-mRNA-1
chr4_1	exon	35166537	35166585	35166537	ID=Msa0545220-mRNA-1:exon:8875;Parent=Msa0545220-mRNA-1
chr4_1	exon	35166704	35166769	35166704	ID=Msa0545220-mRNA-1:exon:8876;Parent=Msa0545220-mRNA-1
chr4_1	exon	35166853	35166929	35166853	ID=Msa0545220-mRNA-1:exon:8877;Parent=Msa0545220-mRNA-1
chr4_1	exon	35167096	35167324	35167096	ID=Msa0545220-mRNA-1:exon:8878;Parent=Msa0545220-mRNA-1
chr4_1	exon	35167540	35167606	35167540	ID=Msa0545220-mRNA-1:exon:8879;Parent=Msa0545220-mRNA-1
chr4_1	exon	35167743	35168160	35167743	ID=Msa0545220-mRNA-1:exon:8880;Parent=Msa0545220-mRNA-1
chr4_1	exon	35169861	35170028	35169861	ID=Msa0545220-mRNA-1:exon:8881;Parent=Msa0545220-mRNA-1
chr4_1	five_prime_UTR	35162096	35162214	35162096	ID=Msa0545220-mRNA-1:five_prime_utr;Parent=Msa0545220-mRNA-1
chr4_1	five_prime_UTR	35162235	35162283	35162235	ID=Msa0545220-mRNA-1:five_prime_utr;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35162284	35162463	35162284	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35164633	35164822	35164633	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35165004	35165063	35165004	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35165565	35165650	35165565	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35165731	35165819	35165731	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35165911	35165965	35165911	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35166230	35166282	35166230	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35166380	35166430	35166380	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35166537	35166585	35166537	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35166704	35166769	35166704	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35166853	35166929	35166853	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35167096	35167324	35167096	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35167540	35167606	35167540	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	CDS	35167743	35167873	35167743	ID=Msa0545220-mRNA-1:cds;Parent=Msa0545220-mRNA-1
chr4_1	three_prime_UTR	35167874	35168160	35167874	ID=Msa0545220-mRNA-1:three_prime_utr;Parent=Msa0545220-mRNA-1
chr4_1	three_prime_UTR	35169861	35170028	35169861	ID=Msa0545220-mRNA-1:three_prime_utr;Parent=Msa0545220-mRNA-1

Gene Sequence

>Msa0545220

ATGTCGGGCACCCGAACTCCTCCCGCCACCGCCGCGCCGGACCAGATCATGCAGCAACGTCAACTCCCTTTCTCCTCCATGAAACCTCCCTTTCTCTCCGCCGGAGATTATCACCGCTTCGCACCTGACCACCGCCGGAATCAAGACCTCGAAACTGAAGCCATCGTTGTTAAAACTCCTCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCAGGTGATAGGATGACTCCTGGATCCACTGCAGCAGCCAATAGTTCTGTTCAGACGCCTGTATCTGGAAAGGCGGGGAAGGGAGGAAAATCCTCTAGGATGACAAAAAGCAACAGAACTGGAACTCAAACCCCTGGCTCAAATATTGGTTCTCCTTCAGGAAATAATCTCACCCCTGCTGGTCCATGTCGATATGACAGCTCATTAGGTCTGTTGACGAAAAAGTTCATCGAGTTAATAAAACAAGCAGAGGATGGTATTCTTGATCTAAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATTACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTGGATGTTTCAAAACCAGGGGAGGCCGATGATAGTTTTTCTAGTTTACAGGCAGAAATTGAAAATTTAACAATTGAGGAACGCCGGTTGGATGAACAAATAAGGGAGATGCAAGAAAGACTACGGAATCTCAGTGAAGATGAAAATAATGAGAAGTTTCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTAATAGCAATTAAAGCTCCACATGGTACCACTTTGGAAGTACCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGAAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATCCACGGTGTTGATGTTGCATCCAAATTTCCACCCAGTCCAGAAGTTAACAAAGTTAACAAGGATCCATCAACTGTGGTCCCAGAAGATAAAGGGAAGGAAATAGAAGTGCAGAGACAAGATGGTGAAGGGCCTAGTACAGATCTTACCAACAATCACGACTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTACTGATGCTGATTACTGGCTTTTATCTGATGCTGATGTTAGCATAACCGATATGTGGAGAACAGAACCTGGAGTAGAATGGAATGAACTCGAAGCACTTCAAGAAGAATATTGTATGGCTCGTGAGCAAACTACAACCCCAAATCATGCTTCAAATATTGATGAACGGCCTTCTGCATCCAACCCTACTGTAGGATGA

Protein sequence

>Msa0545220

MSGTRTPPATAAPDQIMQQRQLPFSSMKPPFLSAGDYHRFAPDHRRNQDLETEAIVVKTPQLKRKSEAADFEADSGDRMTPGSTAAANSSVQTPVSGKAGKGGKSSRMTKSNRTGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFIELIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFSSLQAEIENLTIEERRLDEQIREMQERLRNLSEDENNEKFLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGVDVASKFPPSPEVNKVNKDPSTVVPEDKGKEIEVQRQDGEGPSTDLTNNHDFVSGIMKIVPSDVATDADYWLLSDADVSITDMWRTEPGVEWNELEALQEEYCMAREQTTTPNHASNIDERPSASNPTVG*