AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0545580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545580 MtrunA17_Chr4g0026311 93.571 140 3 1 1 134 1 140 5.89e-89 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545580 AT2G27470.1 69.231 91 28 0 4 94 8 98 2.67e-41 138
Msa0545580 AT3G53340.5 33.051 118 69 4 7 124 34 141 4.64e-11 57.8
Msa0545580 AT3G53340.1 33.051 118 69 4 7 124 34 141 4.64e-11 57.8

Find 71 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAATTGGGATTGGAATT+AGG 0.112081 4_1:+36032659 None:intergenic
TAATTGGGATAATTGGAATT+AGG 0.162461 4_1:+36032635 None:intergenic
TTGAATTGGGATTGGAATTA+GGG 0.198515 4_1:+36032660 None:intergenic
TTGTACTTCTTGTTGTTAAT+TGG 0.207370 4_1:+36032689 None:intergenic
TTCTCATCTCCCTTTCCTTT+TGG 0.216918 4_1:+36031120 None:intergenic
AATTGGGATAATTGGAATTA+GGG 0.260536 4_1:+36032636 None:intergenic
CACACGGCGTACGATAGTTT+TGG 0.288672 4_1:+36032565 None:intergenic
ATCATTTGACTGCAAGGAAT+TGG 0.321482 4_1:+36030677 None:intergenic
CCTCACCCATTTCATTTCAT+TGG 0.328861 4_1:+36031037 None:intergenic
GAGCCGAGACATAAAACTTT+AGG 0.330270 4_1:-36030987 Msa0545580:three_prime_UTR
CTTCTTGTTGTTAATTGGTT+TGG 0.334087 4_1:+36032694 None:intergenic
CAAGAAGCTAAGTGGTGATA+TGG 0.339952 4_1:-36032724 Msa0545580:five_prime_UTR
TGAGCAGTTCTTTGTGAATT+CGG 0.342639 4_1:-36030795 Msa0545580:three_prime_UTR
ATACATAATTCCTTGTCATT+TGG 0.343023 4_1:-36030951 Msa0545580:three_prime_UTR
GATGAAGATTCTGGCACTTT+CGG 0.351884 4_1:+36032469 None:intergenic
ATTGGAATTAGGGTTTGAAT+TGG 0.378805 4_1:+36032646 None:intergenic
GAAGGCGAGCCGTCTGATAA+AGG 0.396478 4_1:-36031078 Msa0545580:CDS
AAGGTAGTGGATGAAGATTC+TGG 0.398524 4_1:+36032460 None:intergenic
CTGAGTTTACTGAGTTTGTT+GGG 0.403574 4_1:-36031879 Msa0545580:CDS
TTGTCTATGTATATTATGTT+TGG 0.405519 4_1:-36030613 Msa0545580:three_prime_UTR
TGATGACCAATGAAATGAAA+TGG 0.413243 4_1:-36031043 Msa0545580:exon
TAGCCTCCACTAACCCTTGA+TGG 0.416246 4_1:-36030855 Msa0545580:three_prime_UTR
ATACATAGACAACATGATAA+AGG 0.420535 4_1:+36030624 None:intergenic
TGAATTCGGTTATGAATGTC+TGG 0.427835 4_1:-36030781 Msa0545580:three_prime_UTR
ATTAGGGTTTGAATTGGGAT+TGG 0.428830 4_1:+36032652 None:intergenic
TTGGAATTAGGGTTTGAATT+GGG 0.434343 4_1:+36032647 None:intergenic
CCTCTAAAAGATTCTCTTGA+AGG 0.437256 4_1:-36031856 Msa0545580:intron
TTCCTTCCATCAAGGGTTAG+TGG 0.448575 4_1:+36030849 None:intergenic
ACTGAGTTTACTGAGTTTGT+TGG 0.453686 4_1:-36031880 Msa0545580:CDS
CTAAAAGCTTCCTTCCATCA+AGG 0.454247 4_1:+36030841 None:intergenic
AGCGGCAGTGCCAAAAGGAA+AGG 0.481373 4_1:-36031130 Msa0545580:CDS
GCAGGGCTAATGATATATGT+AGG 0.482928 4_1:-36031957 Msa0545580:intron
AACGGCAATGTCGCCGTCGT+CGG 0.485500 4_1:+36032517 None:intergenic
ATCGACAATGGCTGAGGCGG+AGG 0.486553 4_1:-36032594 Msa0545580:exon
TATCGTACGCCGTGTGGTGA+AGG 0.496035 4_1:-36032558 Msa0545580:CDS
CTTACGTAGCGGAAAGGTAG+TGG 0.497193 4_1:+36032447 None:intergenic
TAAAAGCTTCCTTCCATCAA+GGG 0.498227 4_1:+36030842 None:intergenic
GTCGCCGTCGTCGGAGCAAG+TGG 0.510785 4_1:+36032526 None:intergenic
GATGACCAATGAAATGAAAT+GGG 0.514129 4_1:-36031042 Msa0545580:exon
TCAAATTTGTTGCAGCATTG+AGG 0.516386 4_1:+36030750 None:intergenic
ATGTATATTATGTTTGGATG+AGG 0.517268 4_1:-36030607 Msa0545580:three_prime_UTR
GAGAAAATCGACAATGGCTG+AGG 0.540596 4_1:-36032600 Msa0545580:exon
TGAGAAGGGAAAGAAAAGAA+AGG 0.540607 4_1:-36031103 Msa0545580:CDS
AAAAGGAAAGGGAGATGAGA+AGG 0.549945 4_1:-36031118 Msa0545580:CDS
CAGGGCTAATGATATATGTA+GGG 0.556080 4_1:-36031956 Msa0545580:CDS
AAGAAAGCGGCAGTGCCAAA+AGG 0.559929 4_1:-36031135 Msa0545580:CDS
GCGGCAGTGCCAAAAGGAAA+GGG 0.560436 4_1:-36031129 Msa0545580:CDS
AAAATCGACAATGGCTGAGG+CGG 0.566675 4_1:-36032597 Msa0545580:exon
CATAACATCATTTGACTGCA+AGG 0.567923 4_1:+36030671 None:intergenic
CTCCACTAACCCTTGATGGA+AGG 0.568901 4_1:-36030851 Msa0545580:three_prime_UTR
CTTTCCACTTGCTCCGACGA+CGG 0.580800 4_1:-36032530 Msa0545580:CDS
CCGTCTGATAAAGGCGATGG+TGG 0.589063 4_1:-36031069 Msa0545580:CDS
AAAGGAAAGGGAGATGAGAA+GGG 0.589156 4_1:-36031117 Msa0545580:CDS
AAGCTAAGTGGTGATATGGC+GGG 0.590519 4_1:-36032720 Msa0545580:five_prime_UTR
CAAAACTATCGTACGCCGTG+TGG 0.603664 4_1:-36032564 Msa0545580:CDS
GGAAAGAAAAGAAAGGCGGA+AGG 0.603937 4_1:-36031096 Msa0545580:CDS
GAAGCTAAGTGGTGATATGG+CGG 0.605561 4_1:-36032721 Msa0545580:five_prime_UTR
GAAGGGAAAGAAAAGAAAGG+CGG 0.609576 4_1:-36031100 Msa0545580:CDS
AAGAAGAGCGTCTTTGTGAA+CGG 0.610289 4_1:+36032499 None:intergenic
CAAGCACTTACGTAGCGGAA+AGG 0.614570 4_1:+36032441 None:intergenic
CCAATGAAATGAAATGGGTG+AGG 0.615041 4_1:-36031037 Msa0545580:exon
CCACCATCGCCTTTATCAGA+CGG 0.623150 4_1:+36031069 None:intergenic
GAGCCGTCTGATAAAGGCGA+TGG 0.623654 4_1:-36031072 Msa0545580:CDS
GAAGAAGAGAAAATCGACAA+TGG 0.639571 4_1:-36032606 Msa0545580:exon
CTTCCATCAAGGGTTAGTGG+AGG 0.650761 4_1:+36030852 None:intergenic
CAATGAAATGAAATGGGTGA+GGG 0.667060 4_1:-36031036 Msa0545580:exon
AAAGAATGCTGGGAAGAAAG+CGG 0.668115 4_1:-36031148 Msa0545580:CDS
ATATATGTAGGGAGTCAAAG+AGG 0.682246 4_1:-36031945 Msa0545580:CDS
ACGCAAGCATCCAAATGACA+AGG 0.683080 4_1:+36030941 None:intergenic
AAAGCTTCTCCTTCACCACA+CGG 0.706469 4_1:+36032549 None:intergenic
TTGAGTGTATGTAGTAAACG+TGG 0.725186 4_1:-36030722 Msa0545580:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATCAAATTTATCAAATTA+GGG + chr4_1:36030959-36030978 None:intergenic 15.0%
!!! GAAAATTATGGTTTATATTT+TGG - chr4_1:36031085-36031104 Msa0545580:CDS 15.0%
!!! AAAATTTTACAATGGTTTTT+GGG - chr4_1:36031119-36031138 Msa0545580:CDS 15.0%
!! ACATCAAATTTATCAAATTA+GGG + chr4_1:36030959-36030978 None:intergenic 15.0%
!!! GAAAATTATGGTTTATATTT+TGG - chr4_1:36031085-36031104 Msa0545580:CDS 15.0%
!!! AAAATTTTACAATGGTTTTT+GGG - chr4_1:36031119-36031138 Msa0545580:CDS 15.0%
!! GACATCAAATTTATCAAATT+AGG + chr4_1:36030960-36030979 None:intergenic 20.0%
!! AAATTGAAACTTTGATTGTA+AGG - chr4_1:36031054-36031073 Msa0545580:CDS 20.0%
!!! AATTATGGTTTATATTTTGG+AGG - chr4_1:36031088-36031107 Msa0545580:CDS 20.0%
!!! GAAAATTTTACAATGGTTTT+TGG - chr4_1:36031118-36031137 Msa0545580:CDS 20.0%
!! TAAGAAAGAGGATAAAAATT+AGG - chr4_1:36031178-36031197 Msa0545580:intron 20.0%
!! AAGAAAGAGGATAAAAATTA+GGG - chr4_1:36031179-36031198 Msa0545580:intron 20.0%
!!! TATTTTTCTTTTCATTGCAA+TGG - chr4_1:36031640-36031659 Msa0545580:intron 20.0%
!! TTGTCTATGTATATTATGTT+TGG - chr4_1:36032715-36032734 Msa0545580:five_prime_UTR 20.0%
!! GACATCAAATTTATCAAATT+AGG + chr4_1:36030960-36030979 None:intergenic 20.0%
!! AAATTGAAACTTTGATTGTA+AGG - chr4_1:36031054-36031073 Msa0545580:CDS 20.0%
!!! AATTATGGTTTATATTTTGG+AGG - chr4_1:36031088-36031107 Msa0545580:CDS 20.0%
!!! GAAAATTTTACAATGGTTTT+TGG - chr4_1:36031118-36031137 Msa0545580:CDS 20.0%
!! TAAGAAAGAGGATAAAAATT+AGG - chr4_1:36031178-36031197 Msa0545580:intron 20.0%
!! AAGAAAGAGGATAAAAATTA+GGG - chr4_1:36031179-36031198 Msa0545580:intron 20.0%
!!! TATTTTTCTTTTCATTGCAA+TGG - chr4_1:36031640-36031659 Msa0545580:intron 20.0%
!! TTGTCTATGTATATTATGTT+TGG - chr4_1:36032715-36032734 Msa0545580:five_prime_UTR 20.0%
!!! TTGTACTTCTTGTTGTTAAT+TGG + chr4_1:36030642-36030661 None:intergenic 25.0%
! AATTGGGATAATTGGAATTA+GGG + chr4_1:36030695-36030714 None:intergenic 25.0%
! TAATTGGGATAATTGGAATT+AGG + chr4_1:36030696-36030715 None:intergenic 25.0%
!!! CGATTTTTAATTGGGATAAT+TGG + chr4_1:36030703-36030722 None:intergenic 25.0%
!!! CTCTTCTTCGATTTTTAATT+GGG + chr4_1:36030711-36030730 None:intergenic 25.0%
!! TCTCTTCTTCGATTTTTAAT+TGG + chr4_1:36030712-36030731 None:intergenic 25.0%
! AATTATTTGTGCGCAAATTA+GGG + chr4_1:36030927-36030946 None:intergenic 25.0%
! TAATTATTTGTGCGCAAATT+AGG + chr4_1:36030928-36030947 None:intergenic 25.0%
!! TAATTGGGGAAATTTTGTAA+TGG - chr4_1:36031000-36031019 Msa0545580:three_prime_UTR 25.0%
!! AATTGGGGAAATTTTGTAAT+GGG - chr4_1:36031001-36031020 Msa0545580:three_prime_UTR 25.0%
!!! TTTATATTTTGGAGGCAATT+GGG - chr4_1:36031096-36031115 Msa0545580:CDS 25.0%
!! CAATTGGGAAAATTTTACAA+TGG - chr4_1:36031111-36031130 Msa0545580:CDS 25.0%
! TTCATGGGTGATTTAAAAAA+TGG - chr4_1:36031147-36031166 Msa0545580:CDS 25.0%
! TCATGGGTGATTTAAAAAAT+GGG - chr4_1:36031148-36031167 Msa0545580:CDS 25.0%
!! ATAAAAATGGGAACTTTTTG+AGG - chr4_1:36031309-36031328 Msa0545580:intron 25.0%
!! TGTCATTTAAGCAATCATTA+TGG - chr4_1:36031617-36031636 Msa0545580:intron 25.0%
!!! CATTTTAGAGTTACAATTCA+TGG + chr4_1:36031779-36031798 None:intergenic 25.0%
!!! TAACCTAAAGTTTTATGTCT+CGG + chr4_1:36032347-36032366 None:intergenic 25.0%
! ATACATAATTCCTTGTCATT+TGG - chr4_1:36032377-36032396 Msa0545580:intron 25.0%
!!! CTTTTAGGAAAGAATATGAA+GGG - chr4_1:36032503-36032522 Msa0545580:CDS 25.0%
! ATACATAGACAACATGATAA+AGG + chr4_1:36032707-36032726 None:intergenic 25.0%
! ATGTATATTATGTTTGGATG+AGG - chr4_1:36032721-36032740 Msa0545580:five_prime_UTR 25.0%
!!! TTGTACTTCTTGTTGTTAAT+TGG + chr4_1:36030642-36030661 None:intergenic 25.0%
! AATTGGGATAATTGGAATTA+GGG + chr4_1:36030695-36030714 None:intergenic 25.0%
! TAATTGGGATAATTGGAATT+AGG + chr4_1:36030696-36030715 None:intergenic 25.0%
!!! CGATTTTTAATTGGGATAAT+TGG + chr4_1:36030703-36030722 None:intergenic 25.0%
!!! CTCTTCTTCGATTTTTAATT+GGG + chr4_1:36030711-36030730 None:intergenic 25.0%
!! TCTCTTCTTCGATTTTTAAT+TGG + chr4_1:36030712-36030731 None:intergenic 25.0%
! AATTATTTGTGCGCAAATTA+GGG + chr4_1:36030927-36030946 None:intergenic 25.0%
! TAATTATTTGTGCGCAAATT+AGG + chr4_1:36030928-36030947 None:intergenic 25.0%
!! TAATTGGGGAAATTTTGTAA+TGG - chr4_1:36031000-36031019 Msa0545580:three_prime_UTR 25.0%
!! AATTGGGGAAATTTTGTAAT+GGG - chr4_1:36031001-36031020 Msa0545580:three_prime_UTR 25.0%
!!! TTTATATTTTGGAGGCAATT+GGG - chr4_1:36031096-36031115 Msa0545580:CDS 25.0%
!! CAATTGGGAAAATTTTACAA+TGG - chr4_1:36031111-36031130 Msa0545580:CDS 25.0%
! TTCATGGGTGATTTAAAAAA+TGG - chr4_1:36031147-36031166 Msa0545580:CDS 25.0%
! TCATGGGTGATTTAAAAAAT+GGG - chr4_1:36031148-36031167 Msa0545580:CDS 25.0%
!! ATAAAAATGGGAACTTTTTG+AGG - chr4_1:36031309-36031328 Msa0545580:intron 25.0%
!! TGTCATTTAAGCAATCATTA+TGG - chr4_1:36031617-36031636 Msa0545580:intron 25.0%
!!! CATTTTAGAGTTACAATTCA+TGG + chr4_1:36031779-36031798 None:intergenic 25.0%
!!! TAACCTAAAGTTTTATGTCT+CGG + chr4_1:36032347-36032366 None:intergenic 25.0%
! ATACATAATTCCTTGTCATT+TGG - chr4_1:36032377-36032396 Msa0545580:intron 25.0%
!!! CTTTTAGGAAAGAATATGAA+GGG - chr4_1:36032503-36032522 Msa0545580:CDS 25.0%
! ATACATAGACAACATGATAA+AGG + chr4_1:36032707-36032726 None:intergenic 25.0%
! ATGTATATTATGTTTGGATG+AGG - chr4_1:36032721-36032740 Msa0545580:five_prime_UTR 25.0%
!! GAAATTTTCAAGAAGCTAAG+TGG - chr4_1:36030596-36030615 Msa0545580:three_prime_UTR 30.0%
!! CTTCTTGTTGTTAATTGGTT+TGG + chr4_1:36030637-36030656 None:intergenic 30.0%
TTGAATTGGGATTGGAATTA+GGG + chr4_1:36030671-36030690 None:intergenic 30.0%
TTTGAATTGGGATTGGAATT+AGG + chr4_1:36030672-36030691 None:intergenic 30.0%
TTGGAATTAGGGTTTGAATT+GGG + chr4_1:36030684-36030703 None:intergenic 30.0%
ATTGGAATTAGGGTTTGAAT+TGG + chr4_1:36030685-36030704 None:intergenic 30.0%
!!! GGAAATTTTGTAATGGGTTT+TGG - chr4_1:36031007-36031026 Msa0545580:three_prime_UTR 30.0%
TGAAACTTTGATTGTAAGGA+AGG - chr4_1:36031058-36031077 Msa0545580:CDS 30.0%
AAGGAAGGAGATGAAAATTA+TGG - chr4_1:36031073-36031092 Msa0545580:CDS 30.0%
!! GTTTATATTTTGGAGGCAAT+TGG - chr4_1:36031095-36031114 Msa0545580:CDS 30.0%
AAAAATTAGGGTTCGTAGTT+TGG - chr4_1:36031191-36031210 Msa0545580:intron 30.0%
! AATGGGGAAAATTTTGCATT+GGG - chr4_1:36031218-36031237 Msa0545580:intron 30.0%
! GAAAATTTTGCATTGGGTTT+TGG - chr4_1:36031224-36031243 Msa0545580:intron 30.0%
TTCCTGGGTGATTATAAAAA+TGG - chr4_1:36031296-36031315 Msa0545580:intron 30.0%
TCCTGGGTGATTATAAAAAT+GGG - chr4_1:36031297-36031316 Msa0545580:intron 30.0%
!! TTTGTGTTGTTTGTATTTGC+AGG - chr4_1:36031353-36031372 Msa0545580:intron 30.0%
!! TTGTGTTGTTTGTATTTGCA+GGG - chr4_1:36031354-36031373 Msa0545580:intron 30.0%
!!! TGTTATGACTGCTTTGTTTT+CGG - chr4_1:36031512-36031531 Msa0545580:intron 30.0%
TGCAATGGAAGTTCAAAAAA+AGG - chr4_1:36031655-36031674 Msa0545580:intron 30.0%
!!! CAGTTTTAGGCTTTTAACAA+TGG + chr4_1:36031806-36031825 None:intergenic 30.0%
! GCATAGAATAACTCAGTTTT+AGG + chr4_1:36031819-36031838 None:intergenic 30.0%
TTATGCTACATAAACAAGTG+TGG - chr4_1:36031913-36031932 Msa0545580:CDS 30.0%
AAGAGGAATGAAACTATTTG+TGG - chr4_1:36031974-36031993 Msa0545580:intron 30.0%
AGAGGAATGAAACTATTTGT+GGG - chr4_1:36031975-36031994 Msa0545580:intron 30.0%
!! GTCAAAAAGAAAAAGTGTCA+AGG + chr4_1:36032143-36032162 None:intergenic 30.0%
! TTTTTGACCTATCAGAGTTT+AGG - chr4_1:36032155-36032174 Msa0545580:intron 30.0%
! TCTTTTTCCTAAACTCTGAT+AGG + chr4_1:36032165-36032184 None:intergenic 30.0%
AGTTTAGGAAAAAGAATGCT+GGG - chr4_1:36032170-36032189 Msa0545580:intron 30.0%
TGATGACCAATGAAATGAAA+TGG - chr4_1:36032285-36032304 Msa0545580:intron 30.0%
GATGACCAATGAAATGAAAT+GGG - chr4_1:36032286-36032305 Msa0545580:intron 30.0%
! AGCGTTTTACATACAAAACT+TGG + chr4_1:36032454-36032473 None:intergenic 30.0%
!! GCTTTTAGGAAAGAATATGA+AGG - chr4_1:36032502-36032521 Msa0545580:CDS 30.0%
!! GAAATTTTCAAGAAGCTAAG+TGG - chr4_1:36030596-36030615 Msa0545580:three_prime_UTR 30.0%
!! CTTCTTGTTGTTAATTGGTT+TGG + chr4_1:36030637-36030656 None:intergenic 30.0%
TTGAATTGGGATTGGAATTA+GGG + chr4_1:36030671-36030690 None:intergenic 30.0%
TTTGAATTGGGATTGGAATT+AGG + chr4_1:36030672-36030691 None:intergenic 30.0%
TTGGAATTAGGGTTTGAATT+GGG + chr4_1:36030684-36030703 None:intergenic 30.0%
ATTGGAATTAGGGTTTGAAT+TGG + chr4_1:36030685-36030704 None:intergenic 30.0%
!!! GGAAATTTTGTAATGGGTTT+TGG - chr4_1:36031007-36031026 Msa0545580:three_prime_UTR 30.0%
TGAAACTTTGATTGTAAGGA+AGG - chr4_1:36031058-36031077 Msa0545580:CDS 30.0%
AAGGAAGGAGATGAAAATTA+TGG - chr4_1:36031073-36031092 Msa0545580:CDS 30.0%
!! GTTTATATTTTGGAGGCAAT+TGG - chr4_1:36031095-36031114 Msa0545580:CDS 30.0%
AAAAATTAGGGTTCGTAGTT+TGG - chr4_1:36031191-36031210 Msa0545580:intron 30.0%
! AATGGGGAAAATTTTGCATT+GGG - chr4_1:36031218-36031237 Msa0545580:intron 30.0%
! GAAAATTTTGCATTGGGTTT+TGG - chr4_1:36031224-36031243 Msa0545580:intron 30.0%
TTCCTGGGTGATTATAAAAA+TGG - chr4_1:36031296-36031315 Msa0545580:intron 30.0%
TCCTGGGTGATTATAAAAAT+GGG - chr4_1:36031297-36031316 Msa0545580:intron 30.0%
!! TTTGTGTTGTTTGTATTTGC+AGG - chr4_1:36031353-36031372 Msa0545580:intron 30.0%
!! TTGTGTTGTTTGTATTTGCA+GGG - chr4_1:36031354-36031373 Msa0545580:intron 30.0%
!!! TGTTATGACTGCTTTGTTTT+CGG - chr4_1:36031512-36031531 Msa0545580:intron 30.0%
TGCAATGGAAGTTCAAAAAA+AGG - chr4_1:36031655-36031674 Msa0545580:intron 30.0%
!!! CAGTTTTAGGCTTTTAACAA+TGG + chr4_1:36031806-36031825 None:intergenic 30.0%
! GCATAGAATAACTCAGTTTT+AGG + chr4_1:36031819-36031838 None:intergenic 30.0%
TTATGCTACATAAACAAGTG+TGG - chr4_1:36031913-36031932 Msa0545580:CDS 30.0%
AAGAGGAATGAAACTATTTG+TGG - chr4_1:36031974-36031993 Msa0545580:intron 30.0%
AGAGGAATGAAACTATTTGT+GGG - chr4_1:36031975-36031994 Msa0545580:intron 30.0%
!! GTCAAAAAGAAAAAGTGTCA+AGG + chr4_1:36032143-36032162 None:intergenic 30.0%
! TTTTTGACCTATCAGAGTTT+AGG - chr4_1:36032155-36032174 Msa0545580:intron 30.0%
! TCTTTTTCCTAAACTCTGAT+AGG + chr4_1:36032165-36032184 None:intergenic 30.0%
AGTTTAGGAAAAAGAATGCT+GGG - chr4_1:36032170-36032189 Msa0545580:intron 30.0%
TGATGACCAATGAAATGAAA+TGG - chr4_1:36032285-36032304 Msa0545580:intron 30.0%
GATGACCAATGAAATGAAAT+GGG - chr4_1:36032286-36032305 Msa0545580:intron 30.0%
! AGCGTTTTACATACAAAACT+TGG + chr4_1:36032454-36032473 None:intergenic 30.0%
!! GCTTTTAGGAAAGAATATGA+AGG - chr4_1:36032502-36032521 Msa0545580:CDS 30.0%
ATTAGGGTTTGAATTGGGAT+TGG + chr4_1:36030679-36030698 None:intergenic 35.0%
GAAGAAGAGAAAATCGACAA+TGG - chr4_1:36030722-36030741 Msa0545580:three_prime_UTR 35.0%
!! GATGTCTGAAATTCCCTTTT+TGG - chr4_1:36030974-36030993 Msa0545580:three_prime_UTR 35.0%
!! ATTCCCTTTTTGGAGGTAAT+TGG - chr4_1:36030984-36031003 Msa0545580:three_prime_UTR 35.0%
!! TTCCCTTTTTGGAGGTAATT+GGG - chr4_1:36030985-36031004 Msa0545580:three_prime_UTR 35.0%
!!! TGGTTTTTGGGATTGATTCA+TGG - chr4_1:36031131-36031150 Msa0545580:CDS 35.0%
!!! GGTTTTTGGGATTGATTCAT+GGG - chr4_1:36031132-36031151 Msa0545580:CDS 35.0%
ATGGGAACTTTGTAAGAAAG+AGG - chr4_1:36031166-36031185 Msa0545580:intron 35.0%
! CAATGGGGAAAATTTTGCAT+TGG - chr4_1:36031217-36031236 Msa0545580:intron 35.0%
!! TTGGCTATTTTGGAGGAAAT+TGG - chr4_1:36031243-36031262 Msa0545580:intron 35.0%
!! TGGCTATTTTGGAGGAAATT+GGG - chr4_1:36031244-36031263 Msa0545580:intron 35.0%
!!! AAATTGGGGAAGTTTTGTTG+TGG - chr4_1:36031259-36031278 Msa0545580:intron 35.0%
!!! AATTGGGGAAGTTTTGTTGT+GGG - chr4_1:36031260-36031279 Msa0545580:intron 35.0%
!! TCCCATTTTTATAATCACCC+AGG + chr4_1:36031301-36031320 None:intergenic 35.0%
CAGGGCTAATGATATATGTA+GGG - chr4_1:36031372-36031391 Msa0545580:intron 35.0%
ATATATGTAGGGAGTCAAAG+AGG - chr4_1:36031383-36031402 Msa0545580:intron 35.0%
ACTGAGTTTACTGAGTTTGT+TGG - chr4_1:36031448-36031467 Msa0545580:intron 35.0%
! CTGAGTTTACTGAGTTTGTT+GGG - chr4_1:36031449-36031468 Msa0545580:intron 35.0%
! CCTTCAAGAGAATCTTTTAG+AGG + chr4_1:36031475-36031494 None:intergenic 35.0%
! CCTCTAAAAGATTCTCTTGA+AGG - chr4_1:36031472-36031491 Msa0545580:intron 35.0%
AACAAAGCAGTCATAACACA+GGG + chr4_1:36031510-36031529 None:intergenic 35.0%
AAACAAAGCAGTCATAACAC+AGG + chr4_1:36031511-36031530 None:intergenic 35.0%
!! AGAGTGAAGTGAAAGTATCA+TGG - chr4_1:36031586-36031605 Msa0545580:intron 35.0%
AATCCCCATTTAGTTGGAAA+TGG - chr4_1:36031710-36031729 Msa0545580:intron 35.0%
ATCCCCATTTAGTTGGAAAT+GGG - chr4_1:36031711-36031730 Msa0545580:intron 35.0%
AACCCATTTCCAACTAAATG+GGG + chr4_1:36031716-36031735 None:intergenic 35.0%
CAACCCATTTCCAACTAAAT+GGG + chr4_1:36031717-36031736 None:intergenic 35.0%
AACTGAGTTATTCTATGCTC+TGG - chr4_1:36031821-36031840 Msa0545580:intron 35.0%
ATGGAAGATATGATCTTGCT+TGG - chr4_1:36031874-36031893 Msa0545580:CDS 35.0%
GTCAGCTAGTGAGTAATATT+TGG - chr4_1:36031935-36031954 Msa0545580:CDS 35.0%
GCTAGTGAGTAATATTTGGT+TGG - chr4_1:36031939-36031958 Msa0545580:CDS 35.0%
GAGTTTAGGAAAAAGAATGC+TGG - chr4_1:36032169-36032188 Msa0545580:intron 35.0%
TGAGAAGGGAAAGAAAAGAA+AGG - chr4_1:36032225-36032244 Msa0545580:intron 35.0%
CAATGAAATGAAATGGGTGA+GGG - chr4_1:36032292-36032311 Msa0545580:intron 35.0%
TAAAAGCTTCCTTCCATCAA+GGG + chr4_1:36032489-36032508 None:intergenic 35.0%
TGAGCAGTTCTTTGTGAATT+CGG - chr4_1:36032533-36032552 Msa0545580:CDS 35.0%
TGAATTCGGTTATGAATGTC+TGG - chr4_1:36032547-36032566 Msa0545580:CDS 35.0%
!! TCAAATTTGTTGCAGCATTG+AGG + chr4_1:36032581-36032600 None:intergenic 35.0%
TTGAGTGTATGTAGTAAACG+TGG - chr4_1:36032606-36032625 Msa0545580:exon 35.0%
ATCATTTGACTGCAAGGAAT+TGG + chr4_1:36032654-36032673 None:intergenic 35.0%
CATAACATCATTTGACTGCA+AGG + chr4_1:36032660-36032679 None:intergenic 35.0%
ATTAGGGTTTGAATTGGGAT+TGG + chr4_1:36030679-36030698 None:intergenic 35.0%
GAAGAAGAGAAAATCGACAA+TGG - chr4_1:36030722-36030741 Msa0545580:three_prime_UTR 35.0%
!! GATGTCTGAAATTCCCTTTT+TGG - chr4_1:36030974-36030993 Msa0545580:three_prime_UTR 35.0%
!! ATTCCCTTTTTGGAGGTAAT+TGG - chr4_1:36030984-36031003 Msa0545580:three_prime_UTR 35.0%
!! TTCCCTTTTTGGAGGTAATT+GGG - chr4_1:36030985-36031004 Msa0545580:three_prime_UTR 35.0%
!!! TGGTTTTTGGGATTGATTCA+TGG - chr4_1:36031131-36031150 Msa0545580:CDS 35.0%
!!! GGTTTTTGGGATTGATTCAT+GGG - chr4_1:36031132-36031151 Msa0545580:CDS 35.0%
ATGGGAACTTTGTAAGAAAG+AGG - chr4_1:36031166-36031185 Msa0545580:intron 35.0%
! CAATGGGGAAAATTTTGCAT+TGG - chr4_1:36031217-36031236 Msa0545580:intron 35.0%
!! TTGGCTATTTTGGAGGAAAT+TGG - chr4_1:36031243-36031262 Msa0545580:intron 35.0%
!! TGGCTATTTTGGAGGAAATT+GGG - chr4_1:36031244-36031263 Msa0545580:intron 35.0%
!!! AAATTGGGGAAGTTTTGTTG+TGG - chr4_1:36031259-36031278 Msa0545580:intron 35.0%
!!! AATTGGGGAAGTTTTGTTGT+GGG - chr4_1:36031260-36031279 Msa0545580:intron 35.0%
!! TCCCATTTTTATAATCACCC+AGG + chr4_1:36031301-36031320 None:intergenic 35.0%
CAGGGCTAATGATATATGTA+GGG - chr4_1:36031372-36031391 Msa0545580:intron 35.0%
ATATATGTAGGGAGTCAAAG+AGG - chr4_1:36031383-36031402 Msa0545580:intron 35.0%
ACTGAGTTTACTGAGTTTGT+TGG - chr4_1:36031448-36031467 Msa0545580:intron 35.0%
! CTGAGTTTACTGAGTTTGTT+GGG - chr4_1:36031449-36031468 Msa0545580:intron 35.0%
! CCTTCAAGAGAATCTTTTAG+AGG + chr4_1:36031475-36031494 None:intergenic 35.0%
! CCTCTAAAAGATTCTCTTGA+AGG - chr4_1:36031472-36031491 Msa0545580:intron 35.0%
AACAAAGCAGTCATAACACA+GGG + chr4_1:36031510-36031529 None:intergenic 35.0%
AAACAAAGCAGTCATAACAC+AGG + chr4_1:36031511-36031530 None:intergenic 35.0%
!! AGAGTGAAGTGAAAGTATCA+TGG - chr4_1:36031586-36031605 Msa0545580:intron 35.0%
AATCCCCATTTAGTTGGAAA+TGG - chr4_1:36031710-36031729 Msa0545580:intron 35.0%
ATCCCCATTTAGTTGGAAAT+GGG - chr4_1:36031711-36031730 Msa0545580:intron 35.0%
AACCCATTTCCAACTAAATG+GGG + chr4_1:36031716-36031735 None:intergenic 35.0%
CAACCCATTTCCAACTAAAT+GGG + chr4_1:36031717-36031736 None:intergenic 35.0%
AACTGAGTTATTCTATGCTC+TGG - chr4_1:36031821-36031840 Msa0545580:intron 35.0%
ATGGAAGATATGATCTTGCT+TGG - chr4_1:36031874-36031893 Msa0545580:CDS 35.0%
GTCAGCTAGTGAGTAATATT+TGG - chr4_1:36031935-36031954 Msa0545580:CDS 35.0%
GCTAGTGAGTAATATTTGGT+TGG - chr4_1:36031939-36031958 Msa0545580:CDS 35.0%
GAGTTTAGGAAAAAGAATGC+TGG - chr4_1:36032169-36032188 Msa0545580:intron 35.0%
TGAGAAGGGAAAGAAAAGAA+AGG - chr4_1:36032225-36032244 Msa0545580:intron 35.0%
CAATGAAATGAAATGGGTGA+GGG - chr4_1:36032292-36032311 Msa0545580:intron 35.0%
TAAAAGCTTCCTTCCATCAA+GGG + chr4_1:36032489-36032508 None:intergenic 35.0%
TGAGCAGTTCTTTGTGAATT+CGG - chr4_1:36032533-36032552 Msa0545580:CDS 35.0%
TGAATTCGGTTATGAATGTC+TGG - chr4_1:36032547-36032566 Msa0545580:CDS 35.0%
!! TCAAATTTGTTGCAGCATTG+AGG + chr4_1:36032581-36032600 None:intergenic 35.0%
TTGAGTGTATGTAGTAAACG+TGG - chr4_1:36032606-36032625 Msa0545580:exon 35.0%
ATCATTTGACTGCAAGGAAT+TGG + chr4_1:36032654-36032673 None:intergenic 35.0%
CATAACATCATTTGACTGCA+AGG + chr4_1:36032660-36032679 None:intergenic 35.0%
CAAGAAGCTAAGTGGTGATA+TGG - chr4_1:36030604-36030623 Msa0545580:three_prime_UTR 40.0%
!! AAGAAGAGCGTCTTTGTGAA+CGG + chr4_1:36030832-36030851 None:intergenic 40.0%
GATGAAGATTCTGGCACTTT+CGG + chr4_1:36030862-36030881 None:intergenic 40.0%
!! AAGGTAGTGGATGAAGATTC+TGG + chr4_1:36030871-36030890 None:intergenic 40.0%
GAAATCAAGCACTTACGTAG+CGG + chr4_1:36030895-36030914 None:intergenic 40.0%
!! GTCTGAAATTCCCTTTTTGG+AGG - chr4_1:36030977-36030996 Msa0545580:three_prime_UTR 40.0%
!! TCCCTTTTTGGAGGTAATTG+GGG - chr4_1:36030986-36031005 Msa0545580:three_prime_UTR 40.0%
TCCCCAATTACCTCCAAAAA+GGG + chr4_1:36030990-36031009 None:intergenic 40.0%
TTCCCCAATTACCTCCAAAA+AGG + chr4_1:36030991-36031010 None:intergenic 40.0%
AATTAGGGTTCGTAGTTTGG+AGG - chr4_1:36031194-36031213 Msa0545580:intron 40.0%
!!! GCATTGGGTTTTGGCTATTT+TGG - chr4_1:36031233-36031252 Msa0545580:intron 40.0%
!!! TTGGGTTTTGGCTATTTTGG+AGG - chr4_1:36031236-36031255 Msa0545580:intron 40.0%
!! GGCTATTTTGGAGGAAATTG+GGG - chr4_1:36031245-36031264 Msa0545580:intron 40.0%
!!! GGAAGTTTTGTTGTGGGTTT+TGG - chr4_1:36031266-36031285 Msa0545580:intron 40.0%
!!! GGTTTTGGAGATTGATTCCT+GGG - chr4_1:36031281-36031300 Msa0545580:intron 40.0%
GCAGGGCTAATGATATATGT+AGG - chr4_1:36031371-36031390 Msa0545580:intron 40.0%
AGACGTAATCCCCATTTAGT+TGG - chr4_1:36031704-36031723 Msa0545580:intron 40.0%
CCAACCCATTTCCAACTAAA+TGG + chr4_1:36031718-36031737 None:intergenic 40.0%
CCATTTAGTTGGAAATGGGT+TGG - chr4_1:36031715-36031734 Msa0545580:intron 40.0%
TGAACCAACTCTAAGCATGA+TGG - chr4_1:36031855-36031874 Msa0545580:intron 40.0%
TCTTCCATCATGCTTAGAGT+TGG + chr4_1:36031862-36031881 None:intergenic 40.0%
! GTTGGTTCATAGCTACAAAG+AGG - chr4_1:36031957-36031976 Msa0545580:intron 40.0%
AAAGAATGCTGGGAAGAAAG+CGG - chr4_1:36032180-36032199 Msa0545580:intron 40.0%
! TTCTCATCTCCCTTTCCTTT+TGG + chr4_1:36032211-36032230 None:intergenic 40.0%
AAAAGGAAAGGGAGATGAGA+AGG - chr4_1:36032210-36032229 Msa0545580:intron 40.0%
AAAGGAAAGGGAGATGAGAA+GGG - chr4_1:36032211-36032230 Msa0545580:intron 40.0%
GAAGGGAAAGAAAAGAAAGG+CGG - chr4_1:36032228-36032247 Msa0545580:intron 40.0%
CCTCACCCATTTCATTTCAT+TGG + chr4_1:36032294-36032313 None:intergenic 40.0%
CCAATGAAATGAAATGGGTG+AGG - chr4_1:36032291-36032310 Msa0545580:intron 40.0%
GAGCCGAGACATAAAACTTT+AGG - chr4_1:36032341-36032360 Msa0545580:intron 40.0%
CTAAAAGCTTCCTTCCATCA+AGG + chr4_1:36032490-36032509 None:intergenic 40.0%
! CTTGATGGAAGGAAGCTTTT+AGG - chr4_1:36032488-36032507 Msa0545580:CDS 40.0%
CAAGAAGCTAAGTGGTGATA+TGG - chr4_1:36030604-36030623 Msa0545580:three_prime_UTR 40.0%
!! AAGAAGAGCGTCTTTGTGAA+CGG + chr4_1:36030832-36030851 None:intergenic 40.0%
GATGAAGATTCTGGCACTTT+CGG + chr4_1:36030862-36030881 None:intergenic 40.0%
!! AAGGTAGTGGATGAAGATTC+TGG + chr4_1:36030871-36030890 None:intergenic 40.0%
GAAATCAAGCACTTACGTAG+CGG + chr4_1:36030895-36030914 None:intergenic 40.0%
!! GTCTGAAATTCCCTTTTTGG+AGG - chr4_1:36030977-36030996 Msa0545580:three_prime_UTR 40.0%
!! TCCCTTTTTGGAGGTAATTG+GGG - chr4_1:36030986-36031005 Msa0545580:three_prime_UTR 40.0%
TCCCCAATTACCTCCAAAAA+GGG + chr4_1:36030990-36031009 None:intergenic 40.0%
TTCCCCAATTACCTCCAAAA+AGG + chr4_1:36030991-36031010 None:intergenic 40.0%
AATTAGGGTTCGTAGTTTGG+AGG - chr4_1:36031194-36031213 Msa0545580:intron 40.0%
!!! GCATTGGGTTTTGGCTATTT+TGG - chr4_1:36031233-36031252 Msa0545580:intron 40.0%
!!! TTGGGTTTTGGCTATTTTGG+AGG - chr4_1:36031236-36031255 Msa0545580:intron 40.0%
!! GGCTATTTTGGAGGAAATTG+GGG - chr4_1:36031245-36031264 Msa0545580:intron 40.0%
!!! GGAAGTTTTGTTGTGGGTTT+TGG - chr4_1:36031266-36031285 Msa0545580:intron 40.0%
!!! GGTTTTGGAGATTGATTCCT+GGG - chr4_1:36031281-36031300 Msa0545580:intron 40.0%
GCAGGGCTAATGATATATGT+AGG - chr4_1:36031371-36031390 Msa0545580:intron 40.0%
AGACGTAATCCCCATTTAGT+TGG - chr4_1:36031704-36031723 Msa0545580:intron 40.0%
CCAACCCATTTCCAACTAAA+TGG + chr4_1:36031718-36031737 None:intergenic 40.0%
CCATTTAGTTGGAAATGGGT+TGG - chr4_1:36031715-36031734 Msa0545580:intron 40.0%
TGAACCAACTCTAAGCATGA+TGG - chr4_1:36031855-36031874 Msa0545580:intron 40.0%
TCTTCCATCATGCTTAGAGT+TGG + chr4_1:36031862-36031881 None:intergenic 40.0%
! GTTGGTTCATAGCTACAAAG+AGG - chr4_1:36031957-36031976 Msa0545580:intron 40.0%
AAAGAATGCTGGGAAGAAAG+CGG - chr4_1:36032180-36032199 Msa0545580:intron 40.0%
! TTCTCATCTCCCTTTCCTTT+TGG + chr4_1:36032211-36032230 None:intergenic 40.0%
AAAAGGAAAGGGAGATGAGA+AGG - chr4_1:36032210-36032229 Msa0545580:intron 40.0%
AAAGGAAAGGGAGATGAGAA+GGG - chr4_1:36032211-36032230 Msa0545580:intron 40.0%
GAAGGGAAAGAAAAGAAAGG+CGG - chr4_1:36032228-36032247 Msa0545580:intron 40.0%
CCTCACCCATTTCATTTCAT+TGG + chr4_1:36032294-36032313 None:intergenic 40.0%
CCAATGAAATGAAATGGGTG+AGG - chr4_1:36032291-36032310 Msa0545580:intron 40.0%
GAGCCGAGACATAAAACTTT+AGG - chr4_1:36032341-36032360 Msa0545580:intron 40.0%
CTAAAAGCTTCCTTCCATCA+AGG + chr4_1:36032490-36032509 None:intergenic 40.0%
! CTTGATGGAAGGAAGCTTTT+AGG - chr4_1:36032488-36032507 Msa0545580:CDS 40.0%
GAAGCTAAGTGGTGATATGG+CGG - chr4_1:36030607-36030626 Msa0545580:three_prime_UTR 45.0%
AAGCTAAGTGGTGATATGGC+GGG - chr4_1:36030608-36030627 Msa0545580:three_prime_UTR 45.0%
GAGAAAATCGACAATGGCTG+AGG - chr4_1:36030728-36030747 Msa0545580:three_prime_UTR 45.0%
AAAATCGACAATGGCTGAGG+CGG - chr4_1:36030731-36030750 Msa0545580:three_prime_UTR 45.0%
! ACACGGCGTACGATAGTTTT+GGG + chr4_1:36030765-36030784 None:intergenic 45.0%
AAAGCTTCTCCTTCACCACA+CGG + chr4_1:36030782-36030801 None:intergenic 45.0%
GTTCGTAGTTTGGAGGCAAT+GGG - chr4_1:36031201-36031220 Msa0545580:intron 45.0%
TTCGTAGTTTGGAGGCAATG+GGG - chr4_1:36031202-36031221 Msa0545580:intron 45.0%
!!! GGGTTTTGGAGATTGATTCC+TGG - chr4_1:36031280-36031299 Msa0545580:intron 45.0%
GACCAATATCTGCCCTAACT+TGG - chr4_1:36032113-36032132 Msa0545580:intron 45.0%
TGCCAAGTTAGGGCAGATAT+TGG + chr4_1:36032118-36032137 None:intergenic 45.0%
TGTCAAGGTCTGCCAAGTTA+GGG + chr4_1:36032128-36032147 None:intergenic 45.0%
GGAAAGAAAAGAAAGGCGGA+AGG - chr4_1:36032232-36032251 Msa0545580:intron 45.0%
! GTTTTATGTCTCGGCTCAGT+TGG + chr4_1:36032338-36032357 None:intergenic 45.0%
ACGCAAGCATCCAAATGACA+AGG + chr4_1:36032390-36032409 None:intergenic 45.0%
TTCCTTCCATCAAGGGTTAG+TGG + chr4_1:36032482-36032501 None:intergenic 45.0%
GAAGCTAAGTGGTGATATGG+CGG - chr4_1:36030607-36030626 Msa0545580:three_prime_UTR 45.0%
AAGCTAAGTGGTGATATGGC+GGG - chr4_1:36030608-36030627 Msa0545580:three_prime_UTR 45.0%
GAGAAAATCGACAATGGCTG+AGG - chr4_1:36030728-36030747 Msa0545580:three_prime_UTR 45.0%
AAAATCGACAATGGCTGAGG+CGG - chr4_1:36030731-36030750 Msa0545580:three_prime_UTR 45.0%
! ACACGGCGTACGATAGTTTT+GGG + chr4_1:36030765-36030784 None:intergenic 45.0%
AAAGCTTCTCCTTCACCACA+CGG + chr4_1:36030782-36030801 None:intergenic 45.0%
GTTCGTAGTTTGGAGGCAAT+GGG - chr4_1:36031201-36031220 Msa0545580:intron 45.0%
TTCGTAGTTTGGAGGCAATG+GGG - chr4_1:36031202-36031221 Msa0545580:intron 45.0%
!!! GGGTTTTGGAGATTGATTCC+TGG - chr4_1:36031280-36031299 Msa0545580:intron 45.0%
GACCAATATCTGCCCTAACT+TGG - chr4_1:36032113-36032132 Msa0545580:intron 45.0%
TGCCAAGTTAGGGCAGATAT+TGG + chr4_1:36032118-36032137 None:intergenic 45.0%
TGTCAAGGTCTGCCAAGTTA+GGG + chr4_1:36032128-36032147 None:intergenic 45.0%
GGAAAGAAAAGAAAGGCGGA+AGG - chr4_1:36032232-36032251 Msa0545580:intron 45.0%
! GTTTTATGTCTCGGCTCAGT+TGG + chr4_1:36032338-36032357 None:intergenic 45.0%
ACGCAAGCATCCAAATGACA+AGG + chr4_1:36032390-36032409 None:intergenic 45.0%
TTCCTTCCATCAAGGGTTAG+TGG + chr4_1:36032482-36032501 None:intergenic 45.0%
! CACACGGCGTACGATAGTTT+TGG + chr4_1:36030766-36030785 None:intergenic 50.0%
CAAAACTATCGTACGCCGTG+TGG - chr4_1:36030764-36030783 Msa0545580:three_prime_UTR 50.0%
! CTTACGTAGCGGAAAGGTAG+TGG + chr4_1:36030884-36030903 None:intergenic 50.0%
! CAAGCACTTACGTAGCGGAA+AGG + chr4_1:36030890-36030909 None:intergenic 50.0%
GGTTCGTAGTTTGGAGGCAA+TGG - chr4_1:36031200-36031219 Msa0545580:intron 50.0%
GTGTCAAGGTCTGCCAAGTT+AGG + chr4_1:36032129-36032148 None:intergenic 50.0%
AAGAAAGCGGCAGTGCCAAA+AGG - chr4_1:36032193-36032212 Msa0545580:intron 50.0%
CCACCATCGCCTTTATCAGA+CGG + chr4_1:36032262-36032281 None:intergenic 50.0%
TAGCCTCCACTAACCCTTGA+TGG - chr4_1:36032473-36032492 Msa0545580:CDS 50.0%
! CTTCCATCAAGGGTTAGTGG+AGG + chr4_1:36032479-36032498 None:intergenic 50.0%
CTCCACTAACCCTTGATGGA+AGG - chr4_1:36032477-36032496 Msa0545580:CDS 50.0%
! CACACGGCGTACGATAGTTT+TGG + chr4_1:36030766-36030785 None:intergenic 50.0%
CAAAACTATCGTACGCCGTG+TGG - chr4_1:36030764-36030783 Msa0545580:three_prime_UTR 50.0%
! CTTACGTAGCGGAAAGGTAG+TGG + chr4_1:36030884-36030903 None:intergenic 50.0%
! CAAGCACTTACGTAGCGGAA+AGG + chr4_1:36030890-36030909 None:intergenic 50.0%
GGTTCGTAGTTTGGAGGCAA+TGG - chr4_1:36031200-36031219 Msa0545580:intron 50.0%
GTGTCAAGGTCTGCCAAGTT+AGG + chr4_1:36032129-36032148 None:intergenic 50.0%
AAGAAAGCGGCAGTGCCAAA+AGG - chr4_1:36032193-36032212 Msa0545580:intron 50.0%
CCACCATCGCCTTTATCAGA+CGG + chr4_1:36032262-36032281 None:intergenic 50.0%
TAGCCTCCACTAACCCTTGA+TGG - chr4_1:36032473-36032492 Msa0545580:CDS 50.0%
! CTTCCATCAAGGGTTAGTGG+AGG + chr4_1:36032479-36032498 None:intergenic 50.0%
CTCCACTAACCCTTGATGGA+AGG - chr4_1:36032477-36032496 Msa0545580:CDS 50.0%
TATCGTACGCCGTGTGGTGA+AGG - chr4_1:36030770-36030789 Msa0545580:three_prime_UTR 55.0%
CTTTCCACTTGCTCCGACGA+CGG - chr4_1:36030798-36030817 Msa0545580:three_prime_UTR 55.0%
AGCGGCAGTGCCAAAAGGAA+AGG - chr4_1:36032198-36032217 Msa0545580:intron 55.0%
GCGGCAGTGCCAAAAGGAAA+GGG - chr4_1:36032199-36032218 Msa0545580:intron 55.0%
GAAGGCGAGCCGTCTGATAA+AGG - chr4_1:36032250-36032269 Msa0545580:intron 55.0%
GAGCCGTCTGATAAAGGCGA+TGG - chr4_1:36032256-36032275 Msa0545580:intron 55.0%
CCGTCTGATAAAGGCGATGG+TGG - chr4_1:36032259-36032278 Msa0545580:intron 55.0%
TATCGTACGCCGTGTGGTGA+AGG - chr4_1:36030770-36030789 Msa0545580:three_prime_UTR 55.0%
CTTTCCACTTGCTCCGACGA+CGG - chr4_1:36030798-36030817 Msa0545580:three_prime_UTR 55.0%
AGCGGCAGTGCCAAAAGGAA+AGG - chr4_1:36032198-36032217 Msa0545580:intron 55.0%
GCGGCAGTGCCAAAAGGAAA+GGG - chr4_1:36032199-36032218 Msa0545580:intron 55.0%
GAAGGCGAGCCGTCTGATAA+AGG - chr4_1:36032250-36032269 Msa0545580:intron 55.0%
GAGCCGTCTGATAAAGGCGA+TGG - chr4_1:36032256-36032275 Msa0545580:intron 55.0%
CCGTCTGATAAAGGCGATGG+TGG - chr4_1:36032259-36032278 Msa0545580:intron 55.0%
ATCGACAATGGCTGAGGCGG+AGG - chr4_1:36030734-36030753 Msa0545580:three_prime_UTR 60.0%
AACGGCAATGTCGCCGTCGT+CGG + chr4_1:36030814-36030833 None:intergenic 60.0%
ATCGACAATGGCTGAGGCGG+AGG - chr4_1:36030734-36030753 Msa0545580:three_prime_UTR 60.0%
AACGGCAATGTCGCCGTCGT+CGG + chr4_1:36030814-36030833 None:intergenic 60.0%
GTCGCCGTCGTCGGAGCAAG+TGG + chr4_1:36030805-36030824 None:intergenic 70.0%
GTCGCCGTCGTCGGAGCAAG+TGG + chr4_1:36030805-36030824 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 36030578 36032772 36030578 ID=Msa0545580;Name=Msa0545580
chr4_1 mRNA 36030578 36032772 36030578 ID=Msa0545580-mRNA-1;Parent=Msa0545580;Name=Msa0545580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=163|1|1|1|1|1|3|475|134
chr4_1 exon 36030578 36031180 36030578 ID=Msa0545580-mRNA-1:exon:9135;Parent=Msa0545580-mRNA-1
chr4_1 exon 36031857 36031975 36031857 ID=Msa0545580-mRNA-1:exon:9134;Parent=Msa0545580-mRNA-1
chr4_1 exon 36032452 36032772 36032452 ID=Msa0545580-mRNA-1:exon:9133;Parent=Msa0545580-mRNA-1
chr4_1 five_prime_UTR 36032610 36032772 36032610 ID=Msa0545580-mRNA-1:five_prime_utr;Parent=Msa0545580-mRNA-1
chr4_1 CDS 36032452 36032609 36032452 ID=Msa0545580-mRNA-1:cds;Parent=Msa0545580-mRNA-1
chr4_1 CDS 36031857 36031975 36031857 ID=Msa0545580-mRNA-1:cds;Parent=Msa0545580-mRNA-1
chr4_1 CDS 36031053 36031180 36031053 ID=Msa0545580-mRNA-1:cds;Parent=Msa0545580-mRNA-1
chr4_1 three_prime_UTR 36030578 36031052 36030578 ID=Msa0545580-mRNA-1:three_prime_utr;Parent=Msa0545580-mRNA-1
Gene Sequence

>Msa0545580

ATGGCTGAGGCGGAGGAGCTTCCCAAAACTATCGTACGCCGTGTGGTGAAGGAGAAGCTTTCCACTTGCTCCGACGACGGCGACATTGCCGTTCACAAAGACGCTCTTCTTGCATTCTCCGAAAGTGCCAGAATCTTCATCCACTACCTTTCCGCTACGGCTAATGATATATGTAGGGAGTCAAAGAGGCAAATCATCAATGCTGAAGATGTGTTCAAAGCTCTTGAAGAAACTGAGTTTACTGAGTTTGTTGGGCCTCTAAAAGATTCTCTTGAAGAGTTTAGGAAAAAGAATGCTGGGAAGAAAGCGGCAGTGCCAAAAGGAAAGGGAGATGAGAAGGGAAAGAAAAGAAAGGCGGAAGGCGAGCCGTCTGATAAAGGCGATGGTGGTGATGATGACCAATGA
Protein sequence

>Msa0545580

MAEAEELPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFTEFVGPLKDSLEEFRKKNAGKKAAVPKGKGDEKGKKRKAEGEPSDKGDGGDDDQ*