Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546390 | XP_003606327.1 | 88.435 | 294 | 27 | 3 | 1 | 288 | 1 | 293 | 1.03e-160 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546390 | sp|Q681X4|ZAT5_ARATH | 42.345 | 307 | 111 | 10 | 17 | 288 | 11 | 286 | 4.22e-55 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546390 | G7JN94 | 88.435 | 294 | 27 | 3 | 1 | 288 | 1 | 293 | 4.91e-161 | 459 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0546390 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546390 | MtrunA17_Chr4g0027991 | 88.435 | 294 | 27 | 3 | 1 | 288 | 1 | 293 | 9.45e-165 | 459 |
| Msa0546390 | MtrunA17_Chr2g0320311 | 45.833 | 312 | 96 | 11 | 17 | 288 | 19 | 297 | 2.74e-70 | 219 |
| Msa0546390 | MtrunA17_Chr1g0197281 | 38.108 | 370 | 117 | 13 | 8 | 288 | 9 | 355 | 2.41e-60 | 195 |
| Msa0546390 | MtrunA17_Chr1g0180311 | 37.736 | 318 | 141 | 12 | 5 | 288 | 3 | 297 | 3.50e-51 | 170 |
| Msa0546390 | MtrunA17_Chr1g0182161 | 37.349 | 166 | 44 | 4 | 109 | 262 | 39 | 156 | 1.76e-25 | 99.8 |
| Msa0546390 | MtrunA17_Chr7g0263121 | 32.558 | 215 | 78 | 6 | 55 | 262 | 4 | 158 | 8.09e-25 | 97.8 |
| Msa0546390 | MtrunA17_Chr7g0222831 | 35.057 | 174 | 44 | 3 | 62 | 232 | 8 | 115 | 1.33e-24 | 97.4 |
| Msa0546390 | MtrunA17_Chr1g0212561 | 34.270 | 178 | 60 | 5 | 56 | 233 | 6 | 126 | 7.85e-23 | 93.6 |
| Msa0546390 | MtrunA17_Chr7g0263131 | 37.107 | 159 | 48 | 5 | 109 | 260 | 34 | 147 | 6.09e-21 | 87.4 |
| Msa0546390 | MtrunA17_Chr1g0188911 | 37.356 | 174 | 61 | 7 | 108 | 256 | 43 | 193 | 1.07e-19 | 84.7 |
| Msa0546390 | MtrunA17_Chr4g0012791 | 37.647 | 170 | 71 | 6 | 108 | 257 | 226 | 380 | 9.84e-19 | 85.9 |
| Msa0546390 | MtrunA17_Chr7g0231181 | 35.065 | 154 | 46 | 4 | 109 | 260 | 240 | 341 | 2.18e-18 | 84.0 |
| Msa0546390 | MtrunA17_Chr4g0061301 | 36.709 | 158 | 79 | 5 | 109 | 260 | 348 | 490 | 8.26e-18 | 83.2 |
| Msa0546390 | MtrunA17_Chr1g0188901 | 34.615 | 182 | 77 | 6 | 85 | 256 | 36 | 185 | 1.24e-16 | 76.3 |
| Msa0546390 | MtrunA17_Chr4g0012691 | 36.810 | 163 | 52 | 5 | 109 | 257 | 220 | 345 | 3.02e-16 | 78.2 |
| Msa0546390 | MtrunA17_Chr2g0327901 | 33.333 | 171 | 54 | 5 | 96 | 264 | 19 | 131 | 1.74e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546390 | AT2G28200.1 | 42.345 | 307 | 111 | 10 | 17 | 288 | 11 | 286 | 4.29e-56 | 182 |
| Msa0546390 | AT5G03510.1 | 39.262 | 298 | 129 | 11 | 21 | 288 | 17 | 292 | 8.18e-52 | 172 |
| Msa0546390 | AT5G04390.1 | 33.777 | 376 | 128 | 11 | 14 | 288 | 7 | 362 | 1.44e-48 | 165 |
| Msa0546390 | AT3G10470.1 | 32.817 | 323 | 97 | 10 | 60 | 288 | 102 | 398 | 2.64e-40 | 144 |
| Msa0546390 | AT2G37430.1 | 33.962 | 212 | 72 | 5 | 58 | 261 | 9 | 160 | 9.72e-28 | 105 |
| Msa0546390 | AT3G53600.1 | 28.767 | 219 | 81 | 6 | 53 | 261 | 4 | 157 | 8.34e-20 | 85.1 |
| Msa0546390 | AT2G28710.1 | 31.100 | 209 | 60 | 7 | 65 | 262 | 13 | 148 | 3.55e-19 | 82.8 |
| Msa0546390 | AT3G60580.1 | 35.047 | 214 | 81 | 7 | 63 | 267 | 124 | 288 | 7.03e-19 | 84.7 |
| Msa0546390 | AT1G02040.1 | 28.947 | 228 | 127 | 6 | 44 | 264 | 93 | 292 | 2.40e-16 | 78.2 |
| Msa0546390 | AT3G19580.1 | 30.588 | 170 | 75 | 6 | 56 | 225 | 61 | 187 | 8.80e-16 | 75.9 |
| Msa0546390 | AT3G19580.2 | 30.588 | 170 | 75 | 6 | 56 | 225 | 61 | 187 | 8.80e-16 | 75.9 |
| Msa0546390 | AT3G46070.1 | 33.140 | 172 | 49 | 6 | 55 | 226 | 4 | 109 | 1.01e-13 | 68.2 |
| Msa0546390 | AT5G67450.1 | 28.780 | 205 | 93 | 6 | 22 | 225 | 34 | 186 | 2.54e-13 | 68.6 |
| Msa0546390 | AT4G35280.1 | 26.695 | 236 | 102 | 5 | 28 | 261 | 102 | 268 | 3.95e-11 | 62.8 |
Find 87 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACAAAGTTTCAGTTTC+CGG | 0.212657 | 4_1:-38049129 | Msa0546390:CDS |
| GGCTTGTTGATGAGAATAAA+AGG | 0.257462 | 4_1:-38049676 | Msa0546390:CDS |
| AACCATGATGATTCCCCATT+TGG | 0.275629 | 4_1:+38049366 | None:intergenic |
| GCCCATGGTTTCTTTCCAAA+TGG | 0.317101 | 4_1:-38049381 | Msa0546390:CDS |
| GGTTTGAAAGCAGCTATTAA+TGG | 0.332072 | 4_1:-38049347 | Msa0546390:CDS |
| GATGGCTGCTGCTCCGGCTT+TGG | 0.337938 | 4_1:-38049087 | Msa0546390:CDS |
| GGCTGCTGCTCCGGCTTTGG+TGG | 0.355185 | 4_1:-38049084 | Msa0546390:CDS |
| CGCCGCGGCTGTCGCGGCCC+CGG | 0.362249 | 4_1:-38049222 | Msa0546390:CDS |
| AGATGATGATGAAGAAGATT+TGG | 0.365412 | 4_1:-38049738 | Msa0546390:CDS |
| CCCATGGTTTCTTTCCAAAT+GGG | 0.368865 | 4_1:-38049380 | Msa0546390:CDS |
| TTTGGTGGGTTGCCATTATT+AGG | 0.369907 | 4_1:-38049069 | None:intergenic |
| GAAACTGAAACTTTGTTTCC+CGG | 0.371224 | 4_1:+38049132 | None:intergenic |
| ATCCCACCATTGCCTAATAA+TGG | 0.373982 | 4_1:+38049057 | None:intergenic |
| ATTCATGAGTGTTCCATTTG+TGG | 0.380454 | 4_1:-38049311 | Msa0546390:CDS |
| GTTTGAAAGCAGCTATTAAT+GGG | 0.383602 | 4_1:-38049346 | Msa0546390:CDS |
| ACAATTGGATCTTAACCTTC+CGG | 0.387432 | 4_1:-38049171 | Msa0546390:CDS |
| TTCAAGCTTTGGGTGGTCAC+AGG | 0.400243 | 4_1:-38049553 | Msa0546390:CDS |
| TGAGATGGAAGAGTTTGTTA+TGG | 0.402618 | 4_1:-38049918 | None:intergenic |
| CGGCACCGGAGGAGGATATC+CGG | 0.403948 | 4_1:-38049151 | Msa0546390:CDS |
| TAGCTCAAGGTGGAAATCAT+AGG | 0.408004 | 4_1:-38049697 | Msa0546390:CDS |
| CTTGGCCTAACTCCTTCATC+CGG | 0.411052 | 4_1:+38049203 | None:intergenic |
| TGTGAACTCTGAACCACAAA+TGG | 0.422342 | 4_1:+38049298 | None:intergenic |
| GCTGTCGCGGCCCCGGATGA+AGG | 0.431837 | 4_1:-38049215 | Msa0546390:CDS |
| TCCTTGTGGTGTTGTTGCTA+TGG | 0.433985 | 4_1:-38049813 | Msa0546390:CDS |
| GGCAAACGCCGCGGCTGTCG+CGG | 0.436027 | 4_1:-38049228 | Msa0546390:CDS |
| TCCAATTGTAAAATATTCCT+TGG | 0.441862 | 4_1:+38049185 | None:intergenic |
| TGATGAGAATAAAAGGGAAA+AGG | 0.444034 | 4_1:-38049669 | Msa0546390:CDS |
| GTGTCCGCCCAATGCTTGTC+CGG | 0.444555 | 4_1:+38049274 | None:intergenic |
| AATGGTGATGGCTGCTGCTC+CGG | 0.446387 | 4_1:-38049093 | Msa0546390:CDS |
| CGGATATCCTCCTCCGGTGC+CGG | 0.447534 | 4_1:+38049152 | None:intergenic |
| CGGCCCCGGATGAAGGAGTT+AGG | 0.454771 | 4_1:-38049208 | Msa0546390:CDS |
| GATGAGAATAAAAGGGAAAA+GGG | 0.455980 | 4_1:-38049668 | Msa0546390:CDS |
| CACCGTCACCACCGCAGCCT+CGG | 0.461254 | 4_1:-38049487 | Msa0546390:CDS |
| ATCCGGGGCCGCGACAGCCG+CGG | 0.468884 | 4_1:+38049220 | None:intergenic |
| TTCCAAATGGGGAATCATCA+TGG | 0.470180 | 4_1:-38049368 | Msa0546390:CDS |
| GTTTGTTATGGAGGAAAAGA+TGG | 0.472339 | 4_1:-38049906 | Msa0546390:CDS |
| AATGGAACACTCATGAATCT+TGG | 0.473930 | 4_1:+38049316 | None:intergenic |
| CCACCCAAAGCTTGAAAAGA+AGG | 0.473990 | 4_1:+38049560 | None:intergenic |
| GCGGACACATGAGGAGGCAT+AGG | 0.474078 | 4_1:-38049259 | Msa0546390:CDS |
| TTGGCCTAACTCCTTCATCC+GGG | 0.483136 | 4_1:+38049204 | None:intergenic |
| TTCACATCCGGACAAGCATT+GGG | 0.483568 | 4_1:-38049281 | Msa0546390:CDS |
| GATGGAAGAGTTTGTTATGG+AGG | 0.484063 | 4_1:-38049915 | Msa0546390:CDS |
| GGATCTTAACCTTCCGGCAC+CGG | 0.484472 | 4_1:-38049165 | Msa0546390:CDS |
| GGTGAGACTAGCACAAAACT+TGG | 0.487527 | 4_1:-38049623 | Msa0546390:CDS |
| GAAGACTGTGGCCGAGGCTG+CGG | 0.491502 | 4_1:+38049476 | None:intergenic |
| CTTGAAAAGAAGGAAAAGTT+CGG | 0.492437 | 4_1:+38049570 | None:intergenic |
| TAACCTTCCGGCACCGGAGG+AGG | 0.492624 | 4_1:-38049159 | Msa0546390:CDS |
| GGCCGAGGCTGCGGTGGTGA+CGG | 0.494533 | 4_1:+38049485 | None:intergenic |
| TGTGGTTCAGAGTTCACATC+CGG | 0.498637 | 4_1:-38049293 | Msa0546390:CDS |
| GCTGCTGCTCCGGCTTTGGT+GGG | 0.498866 | 4_1:-38049083 | Msa0546390:CDS |
| CGGACACATGAGGAGGCATA+GGG | 0.500396 | 4_1:-38049258 | Msa0546390:CDS |
| AAAAGGGAAAAGGGTAGTCA+TGG | 0.501331 | 4_1:-38049659 | Msa0546390:CDS |
| GCTTGTTGATGAGAATAAAA+GGG | 0.507642 | 4_1:-38049675 | Msa0546390:CDS |
| GTTCACATCCGGACAAGCAT+TGG | 0.508676 | 4_1:-38049282 | Msa0546390:CDS |
| GACTGTGGCCGAGGCTGCGG+TGG | 0.512721 | 4_1:+38049479 | None:intergenic |
| TGTTTGATTCTTCTAGCTCA+AGG | 0.518149 | 4_1:-38049710 | Msa0546390:CDS |
| GTTTCCCGGATATCCTCCTC+CGG | 0.518540 | 4_1:+38049146 | None:intergenic |
| TAATGGCAACCCACCAAAGC+CGG | 0.522225 | 4_1:+38049074 | None:intergenic |
| CCATGGTTTCTTTCCAAATG+GGG | 0.530266 | 4_1:-38049379 | Msa0546390:CDS |
| GGCACCGGAGGAGGATATCC+GGG | 0.532359 | 4_1:-38049150 | Msa0546390:CDS |
| TCAAGCTTTGGGTGGTCACA+GGG | 0.535579 | 4_1:-38049552 | Msa0546390:CDS |
| CCAAAGGAAAACGTACTAAG+AGG | 0.536600 | 4_1:-38049850 | Msa0546390:CDS |
| TGAGAAACCTCGTGGGCCCA+TGG | 0.537543 | 4_1:-38049396 | Msa0546390:CDS |
| CCCCATTTGGAAAGAAACCA+TGG | 0.566223 | 4_1:+38049379 | None:intergenic |
| AAAGCCTAAAATCATGGCTG+AGG | 0.584944 | 4_1:-38049519 | Msa0546390:CDS |
| GAGGAGGCATAGGGCATCAG+TGG | 0.587332 | 4_1:-38049249 | Msa0546390:CDS |
| TGATTCGCAATCAGTTAACC+TGG | 0.588441 | 4_1:-38049447 | Msa0546390:CDS |
| ACTCATCACTATTCGCAACC+AGG | 0.588455 | 4_1:+38049429 | None:intergenic |
| TGTGATGAAGACTGTGGCCG+AGG | 0.593635 | 4_1:+38049470 | None:intergenic |
| TATCCTCCTCCGGTGCCGGA+AGG | 0.594929 | 4_1:+38049156 | None:intergenic |
| AAGCATTGGGCGGACACATG+AGG | 0.600154 | 4_1:-38049268 | Msa0546390:CDS |
| AGCAGCTATTAATGGGAACA+AGG | 0.601134 | 4_1:-38049339 | Msa0546390:CDS |
| TCTTAACCTTCCGGCACCGG+AGG | 0.607477 | 4_1:-38049162 | Msa0546390:CDS |
| TGGCCTAACTCCTTCATCCG+GGG | 0.608914 | 4_1:+38049205 | None:intergenic |
| CGAGGCTGCGGTGGTGACGG+TGG | 0.610557 | 4_1:+38049488 | None:intergenic |
| CGGATGAAGGAGTTAGGCCA+AGG | 0.613650 | 4_1:-38049202 | Msa0546390:CDS |
| CCCATTTGGAAAGAAACCAT+GGG | 0.614973 | 4_1:+38049380 | None:intergenic |
| GCCATAGCAACAACACCACA+AGG | 0.645146 | 4_1:+38049812 | None:intergenic |
| GGCATCAGTGGCAAACGCCG+CGG | 0.646242 | 4_1:-38049237 | Msa0546390:CDS |
| CATTGGGCGGACACATGAGG+AGG | 0.646764 | 4_1:-38049265 | Msa0546390:CDS |
| TTGATTCTTCTAGCTCAAGG+TGG | 0.647646 | 4_1:-38049707 | Msa0546390:CDS |
| GATGCAGCTCACATAGCCAA+AGG | 0.649250 | 4_1:-38049866 | Msa0546390:CDS |
| AAAGAAACCATGGGCCCACG+AGG | 0.682791 | 4_1:+38049389 | None:intergenic |
| ACATCCGGACAAGCATTGGG+CGG | 0.687206 | 4_1:-38049278 | Msa0546390:CDS |
| GAAGACGCTGAGAAACCTCG+TGG | 0.694441 | 4_1:-38049404 | Msa0546390:CDS |
| AAGACGCTGAGAAACCTCGT+GGG | 0.716528 | 4_1:-38049403 | Msa0546390:CDS |
| GAATCATGTGATGAAGACTG+TGG | 0.801031 | 4_1:+38049464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTCATGGAAATAAAAAAAT+TGG | - | chr4_1:38049340-38049359 | Msa0546390:CDS | 20.0% |
| !! | AGTCATGGAAATAAAAAAAT+TGG | - | chr4_1:38049340-38049359 | Msa0546390:CDS | 20.0% |
| ! | TCCAATTGTAAAATATTCCT+TGG | + | chr4_1:38049802-38049821 | None:intergenic | 25.0% |
| ! | TCCAATTGTAAAATATTCCT+TGG | + | chr4_1:38049802-38049821 | None:intergenic | 25.0% |
| ! | TTAAGATTTTTGTCTCCTTG+TGG | - | chr4_1:38049157-38049176 | Msa0546390:CDS | 30.0% |
| ! | AGATGATGATGAAGAAGATT+TGG | - | chr4_1:38049246-38049265 | Msa0546390:CDS | 30.0% |
| ! | GCTTGTTGATGAGAATAAAA+GGG | - | chr4_1:38049309-38049328 | Msa0546390:CDS | 30.0% |
| TGATGAGAATAAAAGGGAAA+AGG | - | chr4_1:38049315-38049334 | Msa0546390:CDS | 30.0% | |
| GATGAGAATAAAAGGGAAAA+GGG | - | chr4_1:38049316-38049335 | Msa0546390:CDS | 30.0% | |
| CTTGAAAAGAAGGAAAAGTT+CGG | + | chr4_1:38049417-38049436 | None:intergenic | 30.0% | |
| !! | TTTTCCTTCTTTTCAAGCTT+TGG | - | chr4_1:38049420-38049439 | Msa0546390:CDS | 30.0% |
| !! | TTTCCTTCTTTTCAAGCTTT+GGG | - | chr4_1:38049421-38049440 | Msa0546390:CDS | 30.0% |
| TCACAAAAAGCCTAAAATCA+TGG | - | chr4_1:38049459-38049478 | Msa0546390:CDS | 30.0% | |
| GTTTGAAAGCAGCTATTAAT+GGG | - | chr4_1:38049638-38049657 | Msa0546390:CDS | 30.0% | |
| ! | GCCAAGGAATATTTTACAAT+TGG | - | chr4_1:38049798-38049817 | Msa0546390:CDS | 30.0% |
| TACACAAAAATCAATGGTGA+TGG | - | chr4_1:38049879-38049898 | Msa0546390:CDS | 30.0% | |
| ! | TTAAGATTTTTGTCTCCTTG+TGG | - | chr4_1:38049157-38049176 | Msa0546390:CDS | 30.0% |
| ! | AGATGATGATGAAGAAGATT+TGG | - | chr4_1:38049246-38049265 | Msa0546390:CDS | 30.0% |
| ! | GCTTGTTGATGAGAATAAAA+GGG | - | chr4_1:38049309-38049328 | Msa0546390:CDS | 30.0% |
| TGATGAGAATAAAAGGGAAA+AGG | - | chr4_1:38049315-38049334 | Msa0546390:CDS | 30.0% | |
| GATGAGAATAAAAGGGAAAA+GGG | - | chr4_1:38049316-38049335 | Msa0546390:CDS | 30.0% | |
| CTTGAAAAGAAGGAAAAGTT+CGG | + | chr4_1:38049417-38049436 | None:intergenic | 30.0% | |
| !! | TTTTCCTTCTTTTCAAGCTT+TGG | - | chr4_1:38049420-38049439 | Msa0546390:CDS | 30.0% |
| !! | TTTCCTTCTTTTCAAGCTTT+GGG | - | chr4_1:38049421-38049440 | Msa0546390:CDS | 30.0% |
| TCACAAAAAGCCTAAAATCA+TGG | - | chr4_1:38049459-38049478 | Msa0546390:CDS | 30.0% | |
| GTTTGAAAGCAGCTATTAAT+GGG | - | chr4_1:38049638-38049657 | Msa0546390:CDS | 30.0% | |
| ! | GCCAAGGAATATTTTACAAT+TGG | - | chr4_1:38049798-38049817 | Msa0546390:CDS | 30.0% |
| TACACAAAAATCAATGGTGA+TGG | - | chr4_1:38049879-38049898 | Msa0546390:CDS | 30.0% | |
| !! | GTTTGTTATGGAGGAAAAGA+TGG | - | chr4_1:38049078-38049097 | Msa0546390:CDS | 35.0% |
| !! | TGTTTGATTCTTCTAGCTCA+AGG | - | chr4_1:38049274-38049293 | Msa0546390:CDS | 35.0% |
| !! | GGCTTGTTGATGAGAATAAA+AGG | - | chr4_1:38049308-38049327 | Msa0546390:CDS | 35.0% |
| GGTTTGAAAGCAGCTATTAA+TGG | - | chr4_1:38049637-38049656 | Msa0546390:CDS | 35.0% | |
| AATGGAACACTCATGAATCT+TGG | + | chr4_1:38049671-38049690 | None:intergenic | 35.0% | |
| ATTCATGAGTGTTCCATTTG+TGG | - | chr4_1:38049673-38049692 | Msa0546390:CDS | 35.0% | |
| ACAATTGGATCTTAACCTTC+CGG | - | chr4_1:38049813-38049832 | Msa0546390:CDS | 35.0% | |
| ! | GAAACTGAAACTTTGTTTCC+CGG | + | chr4_1:38049855-38049874 | None:intergenic | 35.0% |
| GGAAACAAAGTTTCAGTTTC+CGG | - | chr4_1:38049855-38049874 | Msa0546390:CDS | 35.0% | |
| !!! | ACCATTGATTTTTGTGTAGC+CGG | + | chr4_1:38049877-38049896 | None:intergenic | 35.0% |
| !! | GTTTGTTATGGAGGAAAAGA+TGG | - | chr4_1:38049078-38049097 | Msa0546390:CDS | 35.0% |
| !! | TGTTTGATTCTTCTAGCTCA+AGG | - | chr4_1:38049274-38049293 | Msa0546390:CDS | 35.0% |
| !! | GGCTTGTTGATGAGAATAAA+AGG | - | chr4_1:38049308-38049327 | Msa0546390:CDS | 35.0% |
| GGTTTGAAAGCAGCTATTAA+TGG | - | chr4_1:38049637-38049656 | Msa0546390:CDS | 35.0% | |
| AATGGAACACTCATGAATCT+TGG | + | chr4_1:38049671-38049690 | None:intergenic | 35.0% | |
| ATTCATGAGTGTTCCATTTG+TGG | - | chr4_1:38049673-38049692 | Msa0546390:CDS | 35.0% | |
| ACAATTGGATCTTAACCTTC+CGG | - | chr4_1:38049813-38049832 | Msa0546390:CDS | 35.0% | |
| ! | GAAACTGAAACTTTGTTTCC+CGG | + | chr4_1:38049855-38049874 | None:intergenic | 35.0% |
| GGAAACAAAGTTTCAGTTTC+CGG | - | chr4_1:38049855-38049874 | Msa0546390:CDS | 35.0% | |
| !!! | ACCATTGATTTTTGTGTAGC+CGG | + | chr4_1:38049877-38049896 | None:intergenic | 35.0% |
| ! | CCTCTTAGTACGTTTTCCTT+TGG | + | chr4_1:38049137-38049156 | None:intergenic | 40.0% |
| CCAAAGGAAAACGTACTAAG+AGG | - | chr4_1:38049134-38049153 | Msa0546390:CDS | 40.0% | |
| !! | TTGATTCTTCTAGCTCAAGG+TGG | - | chr4_1:38049277-38049296 | Msa0546390:CDS | 40.0% |
| TAGCTCAAGGTGGAAATCAT+AGG | - | chr4_1:38049287-38049306 | Msa0546390:CDS | 40.0% | |
| AAAAGGGAAAAGGGTAGTCA+TGG | - | chr4_1:38049325-38049344 | Msa0546390:CDS | 40.0% | |
| AAAGCCTAAAATCATGGCTG+AGG | - | chr4_1:38049465-38049484 | Msa0546390:CDS | 40.0% | |
| ! | TTCTCCTCAGCCATGATTTT+AGG | + | chr4_1:38049472-38049491 | None:intergenic | 40.0% |
| GAATCATGTGATGAAGACTG+TGG | + | chr4_1:38049523-38049542 | None:intergenic | 40.0% | |
| TGATTCGCAATCAGTTAACC+TGG | - | chr4_1:38049537-38049556 | Msa0546390:CDS | 40.0% | |
| CCCATTTGGAAAGAAACCAT+GGG | + | chr4_1:38049607-38049626 | None:intergenic | 40.0% | |
| CCCATGGTTTCTTTCCAAAT+GGG | - | chr4_1:38049604-38049623 | Msa0546390:CDS | 40.0% | |
| CCATGGTTTCTTTCCAAATG+GGG | - | chr4_1:38049605-38049624 | Msa0546390:CDS | 40.0% | |
| TTCCAAATGGGGAATCATCA+TGG | - | chr4_1:38049616-38049635 | Msa0546390:CDS | 40.0% | |
| AACCATGATGATTCCCCATT+TGG | + | chr4_1:38049621-38049640 | None:intergenic | 40.0% | |
| AGCAGCTATTAATGGGAACA+AGG | - | chr4_1:38049645-38049664 | Msa0546390:CDS | 40.0% | |
| TGTGAACTCTGAACCACAAA+TGG | + | chr4_1:38049689-38049708 | None:intergenic | 40.0% | |
| TCCGGCTACACAAAAATCAA+TGG | - | chr4_1:38049873-38049892 | Msa0546390:CDS | 40.0% | |
| ! | CCTCTTAGTACGTTTTCCTT+TGG | + | chr4_1:38049137-38049156 | None:intergenic | 40.0% |
| CCAAAGGAAAACGTACTAAG+AGG | - | chr4_1:38049134-38049153 | Msa0546390:CDS | 40.0% | |
| !! | TTGATTCTTCTAGCTCAAGG+TGG | - | chr4_1:38049277-38049296 | Msa0546390:CDS | 40.0% |
| TAGCTCAAGGTGGAAATCAT+AGG | - | chr4_1:38049287-38049306 | Msa0546390:CDS | 40.0% | |
| AAAAGGGAAAAGGGTAGTCA+TGG | - | chr4_1:38049325-38049344 | Msa0546390:CDS | 40.0% | |
| AAAGCCTAAAATCATGGCTG+AGG | - | chr4_1:38049465-38049484 | Msa0546390:CDS | 40.0% | |
| ! | TTCTCCTCAGCCATGATTTT+AGG | + | chr4_1:38049472-38049491 | None:intergenic | 40.0% |
| GAATCATGTGATGAAGACTG+TGG | + | chr4_1:38049523-38049542 | None:intergenic | 40.0% | |
| TGATTCGCAATCAGTTAACC+TGG | - | chr4_1:38049537-38049556 | Msa0546390:CDS | 40.0% | |
| CCCATTTGGAAAGAAACCAT+GGG | + | chr4_1:38049607-38049626 | None:intergenic | 40.0% | |
| CCCATGGTTTCTTTCCAAAT+GGG | - | chr4_1:38049604-38049623 | Msa0546390:CDS | 40.0% | |
| CCATGGTTTCTTTCCAAATG+GGG | - | chr4_1:38049605-38049624 | Msa0546390:CDS | 40.0% | |
| TTCCAAATGGGGAATCATCA+TGG | - | chr4_1:38049616-38049635 | Msa0546390:CDS | 40.0% | |
| AACCATGATGATTCCCCATT+TGG | + | chr4_1:38049621-38049640 | None:intergenic | 40.0% | |
| AGCAGCTATTAATGGGAACA+AGG | - | chr4_1:38049645-38049664 | Msa0546390:CDS | 40.0% | |
| TGTGAACTCTGAACCACAAA+TGG | + | chr4_1:38049689-38049708 | None:intergenic | 40.0% | |
| TCCGGCTACACAAAAATCAA+TGG | - | chr4_1:38049873-38049892 | Msa0546390:CDS | 40.0% | |
| !! | TCCTTGTGGTGTTGTTGCTA+TGG | - | chr4_1:38049171-38049190 | Msa0546390:CDS | 45.0% |
| GGTGAGACTAGCACAAAACT+TGG | - | chr4_1:38049361-38049380 | Msa0546390:CDS | 45.0% | |
| CCACCCAAAGCTTGAAAAGA+AGG | + | chr4_1:38049427-38049446 | None:intergenic | 45.0% | |
| !!! | CCTTCTTTTCAAGCTTTGGG+TGG | - | chr4_1:38049424-38049443 | Msa0546390:CDS | 45.0% |
| ACTCATCACTATTCGCAACC+AGG | + | chr4_1:38049558-38049577 | None:intergenic | 45.0% | |
| GCCCATGGTTTCTTTCCAAA+TGG | - | chr4_1:38049603-38049622 | Msa0546390:CDS | 45.0% | |
| CCCCATTTGGAAAGAAACCA+TGG | + | chr4_1:38049608-38049627 | None:intergenic | 45.0% | |
| TGTGGTTCAGAGTTCACATC+CGG | - | chr4_1:38049691-38049710 | Msa0546390:CDS | 45.0% | |
| TTCACATCCGGACAAGCATT+GGG | - | chr4_1:38049703-38049722 | Msa0546390:CDS | 45.0% | |
| !! | TCCTTGTGGTGTTGTTGCTA+TGG | - | chr4_1:38049171-38049190 | Msa0546390:CDS | 45.0% |
| GGTGAGACTAGCACAAAACT+TGG | - | chr4_1:38049361-38049380 | Msa0546390:CDS | 45.0% | |
| CCACCCAAAGCTTGAAAAGA+AGG | + | chr4_1:38049427-38049446 | None:intergenic | 45.0% | |
| !!! | CCTTCTTTTCAAGCTTTGGG+TGG | - | chr4_1:38049424-38049443 | Msa0546390:CDS | 45.0% |
| ACTCATCACTATTCGCAACC+AGG | + | chr4_1:38049558-38049577 | None:intergenic | 45.0% | |
| GCCCATGGTTTCTTTCCAAA+TGG | - | chr4_1:38049603-38049622 | Msa0546390:CDS | 45.0% | |
| CCCCATTTGGAAAGAAACCA+TGG | + | chr4_1:38049608-38049627 | None:intergenic | 45.0% | |
| TGTGGTTCAGAGTTCACATC+CGG | - | chr4_1:38049691-38049710 | Msa0546390:CDS | 45.0% | |
| TTCACATCCGGACAAGCATT+GGG | - | chr4_1:38049703-38049722 | Msa0546390:CDS | 45.0% | |
| GATGCAGCTCACATAGCCAA+AGG | - | chr4_1:38049118-38049137 | Msa0546390:CDS | 50.0% | |
| GCCATAGCAACAACACCACA+AGG | + | chr4_1:38049175-38049194 | None:intergenic | 50.0% | |
| !! | TTCAAGCTTTGGGTGGTCAC+AGG | - | chr4_1:38049431-38049450 | Msa0546390:CDS | 50.0% |
| !! | TCAAGCTTTGGGTGGTCACA+GGG | - | chr4_1:38049432-38049451 | Msa0546390:CDS | 50.0% |
| AAGACGCTGAGAAACCTCGT+GGG | - | chr4_1:38049581-38049600 | Msa0546390:CDS | 50.0% | |
| GTTCACATCCGGACAAGCAT+TGG | - | chr4_1:38049702-38049721 | Msa0546390:CDS | 50.0% | |
| TTGGCCTAACTCCTTCATCC+GGG | + | chr4_1:38049783-38049802 | None:intergenic | 50.0% | |
| CTTGGCCTAACTCCTTCATC+CGG | + | chr4_1:38049784-38049803 | None:intergenic | 50.0% | |
| TAATGGCAACCCACCAAAGC+CGG | + | chr4_1:38049913-38049932 | None:intergenic | 50.0% | |
| GATGCAGCTCACATAGCCAA+AGG | - | chr4_1:38049118-38049137 | Msa0546390:CDS | 50.0% | |
| GCCATAGCAACAACACCACA+AGG | + | chr4_1:38049175-38049194 | None:intergenic | 50.0% | |
| !! | TTCAAGCTTTGGGTGGTCAC+AGG | - | chr4_1:38049431-38049450 | Msa0546390:CDS | 50.0% |
| !! | TCAAGCTTTGGGTGGTCACA+GGG | - | chr4_1:38049432-38049451 | Msa0546390:CDS | 50.0% |
| AAGACGCTGAGAAACCTCGT+GGG | - | chr4_1:38049581-38049600 | Msa0546390:CDS | 50.0% | |
| GTTCACATCCGGACAAGCAT+TGG | - | chr4_1:38049702-38049721 | Msa0546390:CDS | 50.0% | |
| TTGGCCTAACTCCTTCATCC+GGG | + | chr4_1:38049783-38049802 | None:intergenic | 50.0% | |
| CTTGGCCTAACTCCTTCATC+CGG | + | chr4_1:38049784-38049803 | None:intergenic | 50.0% | |
| TAATGGCAACCCACCAAAGC+CGG | + | chr4_1:38049913-38049932 | None:intergenic | 50.0% | |
| TGTGATGAAGACTGTGGCCG+AGG | + | chr4_1:38049517-38049536 | None:intergenic | 55.0% | |
| GAAGACGCTGAGAAACCTCG+TGG | - | chr4_1:38049580-38049599 | Msa0546390:CDS | 55.0% | |
| AAAGAAACCATGGGCCCACG+AGG | + | chr4_1:38049598-38049617 | None:intergenic | 55.0% | |
| !! | ACATCCGGACAAGCATTGGG+CGG | - | chr4_1:38049706-38049725 | Msa0546390:CDS | 55.0% |
| !! | AAGCATTGGGCGGACACATG+AGG | - | chr4_1:38049716-38049735 | Msa0546390:CDS | 55.0% |
| ! | CGGACACATGAGGAGGCATA+GGG | - | chr4_1:38049726-38049745 | Msa0546390:CDS | 55.0% |
| TGGCCTAACTCCTTCATCCG+GGG | + | chr4_1:38049782-38049801 | None:intergenic | 55.0% | |
| CGGATGAAGGAGTTAGGCCA+AGG | - | chr4_1:38049782-38049801 | Msa0546390:CDS | 55.0% | |
| GGATCTTAACCTTCCGGCAC+CGG | - | chr4_1:38049819-38049838 | Msa0546390:CDS | 55.0% | |
| GTTTCCCGGATATCCTCCTC+CGG | + | chr4_1:38049841-38049860 | None:intergenic | 55.0% | |
| !! | AATGGTGATGGCTGCTGCTC+CGG | - | chr4_1:38049891-38049910 | Msa0546390:CDS | 55.0% |
| TGTGATGAAGACTGTGGCCG+AGG | + | chr4_1:38049517-38049536 | None:intergenic | 55.0% | |
| GAAGACGCTGAGAAACCTCG+TGG | - | chr4_1:38049580-38049599 | Msa0546390:CDS | 55.0% | |
| AAAGAAACCATGGGCCCACG+AGG | + | chr4_1:38049598-38049617 | None:intergenic | 55.0% | |
| !! | ACATCCGGACAAGCATTGGG+CGG | - | chr4_1:38049706-38049725 | Msa0546390:CDS | 55.0% |
| !! | AAGCATTGGGCGGACACATG+AGG | - | chr4_1:38049716-38049735 | Msa0546390:CDS | 55.0% |
| ! | CGGACACATGAGGAGGCATA+GGG | - | chr4_1:38049726-38049745 | Msa0546390:CDS | 55.0% |
| TGGCCTAACTCCTTCATCCG+GGG | + | chr4_1:38049782-38049801 | None:intergenic | 55.0% | |
| CGGATGAAGGAGTTAGGCCA+AGG | - | chr4_1:38049782-38049801 | Msa0546390:CDS | 55.0% | |
| GGATCTTAACCTTCCGGCAC+CGG | - | chr4_1:38049819-38049838 | Msa0546390:CDS | 55.0% | |
| GTTTCCCGGATATCCTCCTC+CGG | + | chr4_1:38049841-38049860 | None:intergenic | 55.0% | |
| !! | AATGGTGATGGCTGCTGCTC+CGG | - | chr4_1:38049891-38049910 | Msa0546390:CDS | 55.0% |
| TGAGAAACCTCGTGGGCCCA+TGG | - | chr4_1:38049588-38049607 | Msa0546390:CDS | 60.0% | |
| GTGTCCGCCCAATGCTTGTC+CGG | + | chr4_1:38049713-38049732 | None:intergenic | 60.0% | |
| CATTGGGCGGACACATGAGG+AGG | - | chr4_1:38049719-38049738 | Msa0546390:CDS | 60.0% | |
| ! | GCGGACACATGAGGAGGCAT+AGG | - | chr4_1:38049725-38049744 | Msa0546390:CDS | 60.0% |
| ! | GAGGAGGCATAGGGCATCAG+TGG | - | chr4_1:38049735-38049754 | Msa0546390:CDS | 60.0% |
| ! | TCTTAACCTTCCGGCACCGG+AGG | - | chr4_1:38049822-38049841 | Msa0546390:CDS | 60.0% |
| TGAGAAACCTCGTGGGCCCA+TGG | - | chr4_1:38049588-38049607 | Msa0546390:CDS | 60.0% | |
| GTGTCCGCCCAATGCTTGTC+CGG | + | chr4_1:38049713-38049732 | None:intergenic | 60.0% | |
| CATTGGGCGGACACATGAGG+AGG | - | chr4_1:38049719-38049738 | Msa0546390:CDS | 60.0% | |
| ! | GCGGACACATGAGGAGGCAT+AGG | - | chr4_1:38049725-38049744 | Msa0546390:CDS | 60.0% |
| ! | GAGGAGGCATAGGGCATCAG+TGG | - | chr4_1:38049735-38049754 | Msa0546390:CDS | 60.0% |
| ! | TCTTAACCTTCCGGCACCGG+AGG | - | chr4_1:38049822-38049841 | Msa0546390:CDS | 60.0% |
| GAAGACTGTGGCCGAGGCTG+CGG | + | chr4_1:38049511-38049530 | None:intergenic | 65.0% | |
| GGCATCAGTGGCAAACGCCG+CGG | - | chr4_1:38049747-38049766 | Msa0546390:CDS | 65.0% | |
| CGGCCCCGGATGAAGGAGTT+AGG | - | chr4_1:38049776-38049795 | Msa0546390:CDS | 65.0% | |
| ! | TAACCTTCCGGCACCGGAGG+AGG | - | chr4_1:38049825-38049844 | Msa0546390:CDS | 65.0% |
| ! | TATCCTCCTCCGGTGCCGGA+AGG | + | chr4_1:38049831-38049850 | None:intergenic | 65.0% |
| CGGATATCCTCCTCCGGTGC+CGG | + | chr4_1:38049835-38049854 | None:intergenic | 65.0% | |
| ! | CGGCACCGGAGGAGGATATC+CGG | - | chr4_1:38049833-38049852 | Msa0546390:CDS | 65.0% |
| ! | GGCACCGGAGGAGGATATCC+GGG | - | chr4_1:38049834-38049853 | Msa0546390:CDS | 65.0% |
| GATGGCTGCTGCTCCGGCTT+TGG | - | chr4_1:38049897-38049916 | Msa0546390:CDS | 65.0% | |
| ! | GCTGCTGCTCCGGCTTTGGT+GGG | - | chr4_1:38049901-38049920 | Msa0546390:CDS | 65.0% |
| GAAGACTGTGGCCGAGGCTG+CGG | + | chr4_1:38049511-38049530 | None:intergenic | 65.0% | |
| GGCATCAGTGGCAAACGCCG+CGG | - | chr4_1:38049747-38049766 | Msa0546390:CDS | 65.0% | |
| CGGCCCCGGATGAAGGAGTT+AGG | - | chr4_1:38049776-38049795 | Msa0546390:CDS | 65.0% | |
| ! | TAACCTTCCGGCACCGGAGG+AGG | - | chr4_1:38049825-38049844 | Msa0546390:CDS | 65.0% |
| ! | TATCCTCCTCCGGTGCCGGA+AGG | + | chr4_1:38049831-38049850 | None:intergenic | 65.0% |
| CGGATATCCTCCTCCGGTGC+CGG | + | chr4_1:38049835-38049854 | None:intergenic | 65.0% | |
| ! | CGGCACCGGAGGAGGATATC+CGG | - | chr4_1:38049833-38049852 | Msa0546390:CDS | 65.0% |
| ! | GGCACCGGAGGAGGATATCC+GGG | - | chr4_1:38049834-38049853 | Msa0546390:CDS | 65.0% |
| GATGGCTGCTGCTCCGGCTT+TGG | - | chr4_1:38049897-38049916 | Msa0546390:CDS | 65.0% | |
| ! | GCTGCTGCTCCGGCTTTGGT+GGG | - | chr4_1:38049901-38049920 | Msa0546390:CDS | 65.0% |
| CACCGTCACCACCGCAGCCT+CGG | - | chr4_1:38049497-38049516 | Msa0546390:CDS | 70.0% | |
| ! | GGCTGCTGCTCCGGCTTTGG+TGG | - | chr4_1:38049900-38049919 | Msa0546390:CDS | 70.0% |
| CACCGTCACCACCGCAGCCT+CGG | - | chr4_1:38049497-38049516 | Msa0546390:CDS | 70.0% | |
| ! | GGCTGCTGCTCCGGCTTTGG+TGG | - | chr4_1:38049900-38049919 | Msa0546390:CDS | 70.0% |
| !! | CGAGGCTGCGGTGGTGACGG+TGG | + | chr4_1:38049499-38049518 | None:intergenic | 75.0% |
| GGCCGAGGCTGCGGTGGTGA+CGG | + | chr4_1:38049502-38049521 | None:intergenic | 75.0% | |
| GACTGTGGCCGAGGCTGCGG+TGG | + | chr4_1:38049508-38049527 | None:intergenic | 75.0% | |
| GGCAAACGCCGCGGCTGTCG+CGG | - | chr4_1:38049756-38049775 | Msa0546390:CDS | 75.0% | |
| GCTGTCGCGGCCCCGGATGA+AGG | - | chr4_1:38049769-38049788 | Msa0546390:CDS | 75.0% | |
| !! | CGAGGCTGCGGTGGTGACGG+TGG | + | chr4_1:38049499-38049518 | None:intergenic | 75.0% |
| GGCCGAGGCTGCGGTGGTGA+CGG | + | chr4_1:38049502-38049521 | None:intergenic | 75.0% | |
| GACTGTGGCCGAGGCTGCGG+TGG | + | chr4_1:38049508-38049527 | None:intergenic | 75.0% | |
| GGCAAACGCCGCGGCTGTCG+CGG | - | chr4_1:38049756-38049775 | Msa0546390:CDS | 75.0% | |
| GCTGTCGCGGCCCCGGATGA+AGG | - | chr4_1:38049769-38049788 | Msa0546390:CDS | 75.0% | |
| ! | ATCCGGGGCCGCGACAGCCG+CGG | + | chr4_1:38049767-38049786 | None:intergenic | 80.0% |
| ! | ATCCGGGGCCGCGACAGCCG+CGG | + | chr4_1:38049767-38049786 | None:intergenic | 80.0% |
| ! | CGCCGCGGCTGTCGCGGCCC+CGG | - | chr4_1:38049762-38049781 | Msa0546390:CDS | 90.0% |
| ! | CGCCGCGGCTGTCGCGGCCC+CGG | - | chr4_1:38049762-38049781 | Msa0546390:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 38049070 | 38049936 | 38049070 | ID=Msa0546390;Name=Msa0546390 |
| chr4_1 | mRNA | 38049070 | 38049936 | 38049070 | ID=Msa0546390-mRNA-1;Parent=Msa0546390;Name=Msa0546390-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|288 |
| chr4_1 | exon | 38049070 | 38049936 | 38049070 | ID=Msa0546390-mRNA-1:exon:9713;Parent=Msa0546390-mRNA-1 |
| chr4_1 | CDS | 38049070 | 38049936 | 38049070 | ID=Msa0546390-mRNA-1:cds;Parent=Msa0546390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
