Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547710 | XP_003606565.1 | 85.217 | 230 | 9 | 4 | 1 | 206 | 1 | 229 | 1.12e-120 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547710 | G7JSL7 | 85.217 | 230 | 9 | 4 | 1 | 206 | 1 | 229 | 5.34e-121 | 352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0547710 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547710 | MtrunA17_Chr4g0030411 | 93.396 | 106 | 2 | 2 | 1 | 101 | 1 | 106 | 3.96e-66 | 199 |
| Msa0547710 | MtrunA17_Chr2g0327621 | 49.580 | 238 | 82 | 7 | 6 | 210 | 9 | 241 | 3.45e-59 | 186 |
| Msa0547710 | MtrunA17_Chr4g0030421 | 89.908 | 109 | 10 | 1 | 101 | 209 | 15 | 122 | 4.45e-59 | 182 |
| Msa0547710 | MtrunA17_Chr8g0387241 | 48.462 | 130 | 49 | 6 | 53 | 165 | 141 | 269 | 1.52e-24 | 98.6 |
| Msa0547710 | MtrunA17_Chr5g0397361 | 53.571 | 84 | 32 | 2 | 87 | 165 | 136 | 217 | 2.00e-20 | 86.3 |
| Msa0547710 | MtrunA17_Chr1g0168401 | 50.562 | 89 | 44 | 0 | 106 | 194 | 304 | 392 | 2.29e-20 | 88.2 |
| Msa0547710 | MtrunA17_Chr1g0147111 | 38.583 | 127 | 66 | 4 | 51 | 166 | 152 | 277 | 5.77e-19 | 82.8 |
| Msa0547710 | MtrunA17_Chr1g0186171 | 59.016 | 61 | 25 | 0 | 106 | 166 | 301 | 361 | 2.22e-18 | 82.4 |
| Msa0547710 | MtrunA17_Chr2g0311591 | 42.017 | 119 | 55 | 2 | 106 | 210 | 155 | 273 | 2.90e-18 | 80.9 |
| Msa0547710 | MtrunA17_Chr3g0126721 | 46.429 | 84 | 36 | 3 | 90 | 165 | 192 | 274 | 4.27e-16 | 74.7 |
| Msa0547710 | MtrunA17_Chr1g0150471 | 46.552 | 58 | 31 | 0 | 112 | 169 | 246 | 303 | 1.31e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547710 | AT5G41380.1 | 45.679 | 162 | 53 | 7 | 53 | 192 | 126 | 274 | 2.80e-29 | 111 |
| Msa0547710 | AT5G59990.1 | 46.341 | 164 | 59 | 6 | 49 | 199 | 87 | 234 | 3.59e-29 | 109 |
| Msa0547710 | AT1G63820.1 | 48.544 | 103 | 31 | 2 | 90 | 170 | 139 | 241 | 1.18e-22 | 93.2 |
| Msa0547710 | AT5G53420.2 | 36.842 | 114 | 69 | 2 | 55 | 165 | 70 | 183 | 9.33e-21 | 85.9 |
| Msa0547710 | AT5G53420.5 | 36.842 | 114 | 69 | 2 | 55 | 165 | 70 | 183 | 9.33e-21 | 85.9 |
| Msa0547710 | AT5G53420.4 | 36.842 | 114 | 69 | 2 | 55 | 165 | 70 | 183 | 9.33e-21 | 85.9 |
| Msa0547710 | AT2G33350.2 | 76.000 | 50 | 12 | 0 | 117 | 166 | 306 | 355 | 1.84e-20 | 88.6 |
| Msa0547710 | AT2G33350.1 | 76.000 | 50 | 12 | 0 | 117 | 166 | 307 | 356 | 1.93e-20 | 88.6 |
| Msa0547710 | AT2G33350.5 | 76.000 | 50 | 12 | 0 | 117 | 166 | 315 | 364 | 2.14e-20 | 88.6 |
| Msa0547710 | AT2G33350.4 | 76.000 | 50 | 12 | 0 | 117 | 166 | 295 | 344 | 2.18e-20 | 88.6 |
| Msa0547710 | AT5G53420.1 | 36.842 | 114 | 69 | 2 | 55 | 165 | 149 | 262 | 4.29e-20 | 85.9 |
| Msa0547710 | AT3G12890.1 | 57.746 | 71 | 30 | 0 | 116 | 186 | 134 | 204 | 3.70e-19 | 83.2 |
| Msa0547710 | AT1G04500.4 | 72.000 | 50 | 14 | 0 | 117 | 166 | 284 | 333 | 7.92e-19 | 84.0 |
| Msa0547710 | AT1G04500.1 | 72.000 | 50 | 14 | 0 | 117 | 166 | 284 | 333 | 7.92e-19 | 84.0 |
| Msa0547710 | AT1G04500.3 | 72.000 | 50 | 14 | 0 | 117 | 166 | 275 | 324 | 8.76e-19 | 84.0 |
| Msa0547710 | AT4G27900.1 | 33.333 | 132 | 81 | 3 | 41 | 166 | 129 | 259 | 7.84e-17 | 77.0 |
| Msa0547710 | AT4G27900.2 | 33.333 | 132 | 81 | 3 | 41 | 166 | 129 | 259 | 7.84e-17 | 77.0 |
| Msa0547710 | AT5G59990.2 | 44.037 | 109 | 39 | 4 | 49 | 144 | 87 | 186 | 2.20e-12 | 63.5 |
| Msa0547710 | AT2G24790.1 | 44.615 | 65 | 33 | 1 | 101 | 162 | 206 | 270 | 6.87e-11 | 60.8 |
Find 54 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCCATCATTATTAATA+TGG | 0.215056 | 4_1:-41064953 | None:intergenic |
| TCAGCAAACAAAGTAGAAAA+AGG | 0.225080 | 4_1:-41059549 | None:intergenic |
| AAGATGAGGAAGAAGAGAAT+TGG | 0.325488 | 4_1:+41064982 | Msa0547710:CDS |
| TTAATATGGCTCCATTGATT+TGG | 0.330401 | 4_1:-41064939 | None:intergenic |
| TGGTTGTGCTGCTGCATATC+AGG | 0.351829 | 4_1:-41059357 | None:intergenic |
| GAACTACAATAAGAAAATTA+AGG | 0.352434 | 4_1:+41062591 | Msa0547710:CDS |
| GAATTGCTTGATCAAGAAAA+TGG | 0.366594 | 4_1:+41059570 | Msa0547710:CDS |
| GACTCGTCATGAGCAAGATT+TGG | 0.366759 | 4_1:-41065035 | None:intergenic |
| AGATGAGGAAGAAGAGAATT+GGG | 0.375443 | 4_1:+41064983 | Msa0547710:CDS |
| TTCCTCTGGGCTGTAAGGAC+TGG | 0.386798 | 4_1:-41062524 | None:intergenic |
| GACAGTAGGCCACGTATTAG+AGG | 0.396649 | 4_1:+41064879 | Msa0547710:CDS |
| CTCAACTCTGGTGGTGGTGG+TGG | 0.402700 | 4_1:+41059408 | Msa0547710:CDS |
| CAGCGGGTGCACTAGCTACT+TGG | 0.406529 | 4_1:+41059452 | Msa0547710:intron |
| CAGTACTGGTGATCTTGATC+AGG | 0.424707 | 4_1:+41059611 | Msa0547710:CDS |
| TTGGGAATCAGTATGTTTGT+AGG | 0.430394 | 4_1:+41064844 | Msa0547710:intron |
| CAGCTCAACTCTGGTGGTGG+TGG | 0.445463 | 4_1:+41059405 | Msa0547710:CDS |
| ATATGGCTCCATTGATTTGG+TGG | 0.458606 | 4_1:-41064936 | None:intergenic |
| TGGAGCCATATTAATAATGA+TGG | 0.462252 | 4_1:+41064948 | Msa0547710:CDS |
| TAATGAATCCACCAAATCAA+TGG | 0.463510 | 4_1:+41064928 | Msa0547710:CDS |
| AGCGGGTGCACTAGCTACTT+GGG | 0.466418 | 4_1:+41059453 | Msa0547710:intron |
| GGACAGTTTATTTGATACAT+TGG | 0.482895 | 4_1:+41065004 | Msa0547710:CDS |
| CACTAGCTACTTGGGGTCGC+CGG | 0.492708 | 4_1:+41059461 | Msa0547710:intron |
| CCACAGCTCAACTCTGGTGG+TGG | 0.501156 | 4_1:+41059402 | Msa0547710:CDS |
| TAATGCTCCTCTGCATCAAT+CGG | 0.513230 | 4_1:-41059485 | None:intergenic |
| TGGAGAGGAATTAGAAGATG+AGG | 0.517815 | 4_1:+41064968 | Msa0547710:CDS |
| GTGCGGCGAGTTTACAGTAC+TGG | 0.524680 | 4_1:+41059597 | Msa0547710:CDS |
| TCGGTCCCACAGCTCAACTC+TGG | 0.546806 | 4_1:+41059396 | Msa0547710:CDS |
| CTCCTCTGCATCAATCGGTC+CGG | 0.559465 | 4_1:-41059480 | None:intergenic |
| GTACTGTAAACTCGCCGCAC+CGG | 0.574327 | 4_1:-41059594 | None:intergenic |
| GCTTGATCAAGAAAATGGTC+CGG | 0.575893 | 4_1:+41059575 | Msa0547710:CDS |
| CGCCGGACCGATTGATGCAG+AGG | 0.577048 | 4_1:+41059478 | Msa0547710:CDS |
| TTACAGCCCAGAGGAAAAGA+AGG | 0.592097 | 4_1:+41062531 | Msa0547710:CDS |
| ACAGTAGGCCACGTATTAGA+GGG | 0.598648 | 4_1:+41064880 | Msa0547710:CDS |
| ATTATAATAGCTGTAGCAGC+GGG | 0.602727 | 4_1:+41059436 | Msa0547710:CDS |
| GTCCCACAGCTCAACTCTGG+TGG | 0.604461 | 4_1:+41059399 | Msa0547710:CDS |
| GTATGTTTGTAGGAAGACAT+TGG | 0.609319 | 4_1:+41064854 | Msa0547710:intron |
| GCCCAGAGGAAAAGAAGGTG+AGG | 0.612843 | 4_1:+41062536 | Msa0547710:CDS |
| CACCACCAGAGTTGAGCTGT+GGG | 0.613404 | 4_1:-41059401 | None:intergenic |
| GGAAGACATTGGCAGACAGT+AGG | 0.616987 | 4_1:+41064865 | Msa0547710:CDS |
| CCACCACCAGAGTTGAGCTG+TGG | 0.618777 | 4_1:-41059402 | None:intergenic |
| TCATGAGCAAGATTTGGAGT+AGG | 0.623530 | 4_1:-41065029 | None:intergenic |
| GCGGGTGCACTAGCTACTTG+GGG | 0.623679 | 4_1:+41059454 | Msa0547710:intron |
| CCATATTAATAATGATGGAG+AGG | 0.627865 | 4_1:+41064953 | Msa0547710:CDS |
| ATAGAAGCAAGAGAAATCAG+AGG | 0.650504 | 4_1:+41062569 | Msa0547710:CDS |
| AATTATAATAGCTGTAGCAG+CGG | 0.651255 | 4_1:+41059435 | Msa0547710:CDS |
| CTGCTGCATATCAGGCGTGG+TGG | 0.663548 | 4_1:-41059349 | None:intergenic |
| ATGCAGCAGCACAACCACCT+CGG | 0.675442 | 4_1:+41059363 | Msa0547710:CDS |
| AGCCAGTCCTTACAGCCCAG+AGG | 0.687171 | 4_1:+41062522 | Msa0547710:CDS |
| GTGCTGCTGCATATCAGGCG+TGG | 0.690874 | 4_1:-41059352 | None:intergenic |
| ATCAAGAAAATGGTCCGGTG+CGG | 0.695020 | 4_1:+41059580 | Msa0547710:CDS |
| GCAAATCTCCCTCTAATACG+TGG | 0.703686 | 4_1:-41064888 | None:intergenic |
| CCACCTCGGTGAATACGAGT+CGG | 0.716126 | 4_1:+41059377 | Msa0547710:CDS |
| CCGACTCGTATTCACCGAGG+TGG | 0.729716 | 4_1:-41059377 | None:intergenic |
| GGACCGACTCGTATTCACCG+AGG | 0.797146 | 4_1:-41059380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTAATAAATAT+CGG | - | chr4_1:41062697-41062716 | None:intergenic | 0.0% |
| !!! | ATTATAGTTCTTTTTTTTTT+TGG | - | chr4_1:41059783-41059802 | None:intergenic | 10.0% |
| !!! | CTTCAATTTTTTTTTTTTTT+AGG | + | chr4_1:41060906-41060925 | Msa0547710:intron | 10.0% |
| !!! | CATATTATTTATATGATTTT+TGG | - | chr4_1:41061562-41061581 | None:intergenic | 10.0% |
| !!! | AAAAATAATACTTTTTGTTT+AGG | - | chr4_1:41062071-41062090 | None:intergenic | 10.0% |
| !!! | TCTTCTATATATTTTTTTTT+TGG | + | chr4_1:41062099-41062118 | Msa0547710:intron | 10.0% |
| !!! | TTTAAGTTTTAAAACAATAT+TGG | - | chr4_1:41062730-41062749 | None:intergenic | 10.0% |
| !!! | TTTAAAACTTAAATAGTATA+TGG | + | chr4_1:41062737-41062756 | Msa0547710:intron | 10.0% |
| !! | TGTTTAATTAAGTATAAATT+TGG | + | chr4_1:41065105-41065124 | Msa0547710:intron | 10.0% |
| !! | GTCATTATTATATAAAAAAG+TGG | - | chr4_1:41059673-41059692 | None:intergenic | 15.0% |
| !! | CAAAGTAGTATAAAAATTAT+TGG | - | chr4_1:41059760-41059779 | None:intergenic | 15.0% |
| !! | TCATATTTATTTAAATAGGT+CGG | - | chr4_1:41060002-41060021 | None:intergenic | 15.0% |
| !! | TATAAACTAGAATTGAAATA+TGG | + | chr4_1:41060145-41060164 | Msa0547710:intron | 15.0% |
| !!! | TATGAGTTTATTTTTTTCAA+TGG | - | chr4_1:41061015-41061034 | None:intergenic | 15.0% |
| !!! | ACTCATATTTTTTTTTTTAG+AGG | + | chr4_1:41061028-41061047 | Msa0547710:intron | 15.0% |
| !! | ATAAAATAAGATGTAAAATG+AGG | - | chr4_1:41061131-41061150 | None:intergenic | 15.0% |
| !!! | AAAATCTATATCACTTTTTA+TGG | + | chr4_1:41061177-41061196 | Msa0547710:intron | 15.0% |
| !!! | CAATAATTTTAGTTTTTTTG+AGG | - | chr4_1:41061895-41061914 | None:intergenic | 15.0% |
| !! | ACTAAAATTATTGAATAAGT+AGG | + | chr4_1:41061902-41061921 | Msa0547710:intron | 15.0% |
| !!! | TATCCCTAATTATATATTTT+TGG | + | chr4_1:41061943-41061962 | Msa0547710:intron | 15.0% |
| !! | TAGCCAAAAATATATAATTA+GGG | - | chr4_1:41061949-41061968 | None:intergenic | 15.0% |
| !!! | GTTATTGTGATTTTTTTTAT+TGG | + | chr4_1:41062205-41062224 | Msa0547710:intron | 15.0% |
| !!! | TTATTGGTTAAATTTACTAT+TGG | + | chr4_1:41062221-41062240 | Msa0547710:intron | 15.0% |
| !! | TTTCTTTCATCTAAAAAAAA+TGG | - | chr4_1:41063001-41063020 | None:intergenic | 15.0% |
| !!! | AGAACTAATTAATTTGAATA+TGG | - | chr4_1:41063680-41063699 | None:intergenic | 15.0% |
| !! | TAAAAAAACATAAGAAGAAA+AGG | + | chr4_1:41063769-41063788 | Msa0547710:intron | 15.0% |
| !!! | ATATTTTTTATTTTGTTGTG+TGG | + | chr4_1:41063944-41063963 | Msa0547710:intron | 15.0% |
| !!! | TATTTTTTATTTTGTTGTGT+GGG | + | chr4_1:41063945-41063964 | Msa0547710:intron | 15.0% |
| !! | TTAAGAATATTATAACAACA+TGG | + | chr4_1:41064153-41064172 | Msa0547710:intron | 15.0% |
| !! | ATATAAAATCCTCATTATTT+GGG | - | chr4_1:41064241-41064260 | None:intergenic | 15.0% |
| !! | AATATAAAATCCTCATTATT+TGG | - | chr4_1:41064242-41064261 | None:intergenic | 15.0% |
| !!! | GTTTATTTTTGAAAAAACTA+GGG | - | chr4_1:41064504-41064523 | None:intergenic | 15.0% |
| !!! | AGTTTATTTTTGAAAAAACT+AGG | - | chr4_1:41064505-41064524 | None:intergenic | 15.0% |
| !!! | TCAAATTGTAACTATAATTT+TGG | + | chr4_1:41064642-41064661 | Msa0547710:intron | 15.0% |
| !! | GTATATTTAACAAATTACAA+TGG | + | chr4_1:41065184-41065203 | Msa0547710:intron | 15.0% |
| !!! | TATAAAAAAGTGGATTTTAG+AGG | - | chr4_1:41059663-41059682 | None:intergenic | 20.0% |
| !! | GTAGTATAAAAATTATTGGA+CGG | - | chr4_1:41059756-41059775 | None:intergenic | 20.0% |
| !! | CTCTATTTAAGAAAAAAGTT+TGG | - | chr4_1:41059906-41059925 | None:intergenic | 20.0% |
| !!! | GATGAAATAAACTTTTAAAC+AGG | + | chr4_1:41060292-41060311 | Msa0547710:intron | 20.0% |
| !!! | TATTTTTTTTTTTAGAGGAG+TGG | + | chr4_1:41061033-41061052 | Msa0547710:intron | 20.0% |
| !! | ATTGTCACAAAAGATAATAA+AGG | - | chr4_1:41061752-41061771 | None:intergenic | 20.0% |
| !! | GTAGCCAAAAATATATAATT+AGG | - | chr4_1:41061950-41061969 | None:intergenic | 20.0% |
| !! | TTCCACATAAAATTAAACTT+GGG | - | chr4_1:41061973-41061992 | None:intergenic | 20.0% |
| !! | ATTCCACATAAAATTAAACT+TGG | - | chr4_1:41061974-41061993 | None:intergenic | 20.0% |
| !!! | AAAGCTAGCAATATTTTATA+AGG | - | chr4_1:41062276-41062295 | None:intergenic | 20.0% |
| !! | TTACATTATGTTCTTATCAA+CGG | - | chr4_1:41062300-41062319 | None:intergenic | 20.0% |
| !! | GAACTACAATAAGAAAATTA+AGG | + | chr4_1:41062591-41062610 | Msa0547710:CDS | 20.0% |
| !! | AAAATGTATGTATTAAAACG+AGG | - | chr4_1:41062651-41062670 | None:intergenic | 20.0% |
| !!! | TAGTATATGTGATTTGTTTT+GGG | - | chr4_1:41062968-41062987 | None:intergenic | 20.0% |
| !!! | ATAGTATATGTGATTTGTTT+TGG | - | chr4_1:41062969-41062988 | None:intergenic | 20.0% |
| !!! | AAAAAGATTTTTTAGTGTGT+GGG | - | chr4_1:41063213-41063232 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTTTTTAGTGTG+TGG | - | chr4_1:41063214-41063233 | None:intergenic | 20.0% |
| !!! | AGTTCTTTTTCCTATTTTTA+CGG | - | chr4_1:41063485-41063504 | None:intergenic | 20.0% |
| !!! | ATATTTTTGTGTTATAAGAG+AGG | + | chr4_1:41063892-41063911 | Msa0547710:intron | 20.0% |
| !!! | TATTTTTGTGTTATAAGAGA+GGG | + | chr4_1:41063893-41063912 | Msa0547710:intron | 20.0% |
| !!! | CAAAAACAAAATTTGTTTCA+TGG | - | chr4_1:41063972-41063991 | None:intergenic | 20.0% |
| !!! | AATATGGTTCTTCATTTTAA+AGG | - | chr4_1:41064039-41064058 | None:intergenic | 20.0% |
| !! | TTAAAATGAAGAACCATATT+AGG | + | chr4_1:41064039-41064058 | Msa0547710:intron | 20.0% |
| !! | TAAAATGAAGAACCATATTA+GGG | + | chr4_1:41064040-41064059 | Msa0547710:intron | 20.0% |
| !! | TAAAAAATTGTATTGGATGA+GGG | - | chr4_1:41064214-41064233 | None:intergenic | 20.0% |
| !! | TATAAAATCCTCATTATTTG+GGG | - | chr4_1:41064240-41064259 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAATAAACTGAAG+TGG | + | chr4_1:41064509-41064528 | Msa0547710:intron | 20.0% |
| !! | TGAAGAATGAAAATTAGAAT+TGG | + | chr4_1:41064558-41064577 | Msa0547710:intron | 20.0% |
| !!! | TATTCTTTTGATTTTTTGCA+TGG | + | chr4_1:41064591-41064610 | Msa0547710:intron | 20.0% |
| !!! | ATCTTAGTTTTGTTTTCTTT+TGG | + | chr4_1:41064825-41064844 | Msa0547710:intron | 20.0% |
| !!! | TCTTAGTTTTGTTTTCTTTT+GGG | + | chr4_1:41064826-41064845 | Msa0547710:intron | 20.0% |
| ! | TTTAAGAAAAAAGTTTGGTC+TGG | - | chr4_1:41059901-41059920 | None:intergenic | 25.0% |
| ! | TTCTTAAATAGAGAAGACTT+TGG | + | chr4_1:41059913-41059932 | Msa0547710:intron | 25.0% |
| !!! | CTTTCATAAGCTTACTTTTT+AGG | - | chr4_1:41060358-41060377 | None:intergenic | 25.0% |
| ! | CTAAAAAGTAAGCTTATGAA+AGG | + | chr4_1:41060356-41060375 | Msa0547710:intron | 25.0% |
| !!! | GAGTCATTTTTCATTTATGT+AGG | + | chr4_1:41060525-41060544 | Msa0547710:intron | 25.0% |
| ! | AAAAAAAGCGATGATGAAAT+GGG | - | chr4_1:41060639-41060658 | None:intergenic | 25.0% |
| ! | AAAAAAAAGCGATGATGAAA+TGG | - | chr4_1:41060640-41060659 | None:intergenic | 25.0% |
| ! | CTAATTCTTGTCTACAAAAT+TGG | - | chr4_1:41060679-41060698 | None:intergenic | 25.0% |
| !! | TTTTGTAGACAAGAATTAGA+TGG | + | chr4_1:41060680-41060699 | Msa0547710:intron | 25.0% |
| ! | TTCTTTCTTCTTAAACAACT+AGG | + | chr4_1:41060707-41060726 | Msa0547710:intron | 25.0% |
| ! | AGATACTTATAAGATCAGTT+TGG | - | chr4_1:41061103-41061122 | None:intergenic | 25.0% |
| ! | ACTCCATTAAAGAAAATGTT+TGG | - | chr4_1:41061385-41061404 | None:intergenic | 25.0% |
| !! | CATTTTCTTTAATGGAGTAA+TGG | + | chr4_1:41061387-41061406 | Msa0547710:intron | 25.0% |
| !!! | ATGTCTTTTATTTTCTTCCA+GGG | - | chr4_1:41061416-41061435 | None:intergenic | 25.0% |
| !!! | AATGTCTTTTATTTTCTTCC+AGG | - | chr4_1:41061417-41061436 | None:intergenic | 25.0% |
| ! | TCCACATAAAATTAAACTTG+GGG | - | chr4_1:41061972-41061991 | None:intergenic | 25.0% |
| !! | ATGTGGAATAAATTTTTGTC+TGG | + | chr4_1:41061985-41062004 | Msa0547710:intron | 25.0% |
| !!! | AATAAATTTTTGTCTGGCTT+AGG | + | chr4_1:41061991-41062010 | Msa0547710:intron | 25.0% |
| !!! | ACAATATGTTGTTGTTGTTT+TGG | + | chr4_1:41062123-41062142 | Msa0547710:intron | 25.0% |
| ! | AACTTAAATAGTATATGGTC+CGG | + | chr4_1:41062742-41062761 | Msa0547710:intron | 25.0% |
| ! | CTACTTTAAACAATTTAAGC+TGG | + | chr4_1:41062789-41062808 | Msa0547710:intron | 25.0% |
| !!! | CAACTCAAGTTTTTTATAAG+TGG | - | chr4_1:41062929-41062948 | None:intergenic | 25.0% |
| ! | CACTTATAAAAAACTTGAGT+TGG | + | chr4_1:41062927-41062946 | Msa0547710:intron | 25.0% |
| !!! | ATAAAAAACTTGAGTTGGAA+AGG | + | chr4_1:41062932-41062951 | Msa0547710:intron | 25.0% |
| ! | TCTAAAAAAAATGGCATACT+TGG | - | chr4_1:41062992-41063011 | None:intergenic | 25.0% |
| ! | AAACTCACAAACAAAACATT+AGG | - | chr4_1:41063047-41063066 | None:intergenic | 25.0% |
| !!! | TAATGTTTTGTTTGTGAGTT+TGG | + | chr4_1:41063046-41063065 | Msa0547710:intron | 25.0% |
| ! | TTCATAAAACCTGTAATTGA+AGG | - | chr4_1:41063172-41063191 | None:intergenic | 25.0% |
| ! | TATGAAGAAAAATTGCTTCA+TGG | + | chr4_1:41063186-41063205 | Msa0547710:intron | 25.0% |
| !!! | CTTTTTTTAATGTGCAACAT+TGG | + | chr4_1:41063227-41063246 | Msa0547710:intron | 25.0% |
| !! | AAAATGATGGTTCTATACTT+GGG | - | chr4_1:41063290-41063309 | None:intergenic | 25.0% |
| !! | TAAAATGATGGTTCTATACT+TGG | - | chr4_1:41063291-41063310 | None:intergenic | 25.0% |
| ! | TCTTTGATCTAGAAGTTTAT+GGG | - | chr4_1:41063401-41063420 | None:intergenic | 25.0% |
| ! | TTCTTTGATCTAGAAGTTTA+TGG | - | chr4_1:41063402-41063421 | None:intergenic | 25.0% |
| !!! | GTAGTTTATTTGTTGCTTTT+TGG | - | chr4_1:41063542-41063561 | None:intergenic | 25.0% |
| !! | TTCTTTTTCCTGTTATATTG+TGG | - | chr4_1:41063567-41063586 | None:intergenic | 25.0% |
| ! | AGAAAAGGAAAAAACAATGA+AGG | + | chr4_1:41063784-41063803 | Msa0547710:intron | 25.0% |
| !!! | TGCTATTGAAAGTCATTTTA+AGG | + | chr4_1:41063999-41064018 | Msa0547710:intron | 25.0% |
| !!! | GCTATTGAAAGTCATTTTAA+GGG | + | chr4_1:41064000-41064019 | Msa0547710:intron | 25.0% |
| !!! | CTATTGAAAGTCATTTTAAG+GGG | + | chr4_1:41064001-41064020 | Msa0547710:intron | 25.0% |
| ! | AAAATGAAGAACCATATTAG+GGG | + | chr4_1:41064041-41064060 | Msa0547710:intron | 25.0% |
| ! | CTAAAAAATTGTATTGGATG+AGG | - | chr4_1:41064215-41064234 | None:intergenic | 25.0% |
| !! | ACAAAATTTTCTCCATTCAT+TGG | - | chr4_1:41064394-41064413 | None:intergenic | 25.0% |
| !! | CATCTAAGATTGAAAGTAAA+TGG | + | chr4_1:41064456-41064475 | Msa0547710:intron | 25.0% |
| ! | AAATGGAAACAGTAAAAAGT+TGG | + | chr4_1:41064473-41064492 | Msa0547710:intron | 25.0% |
| !! | ACAATTTGATATTTTCTGTG+TGG | - | chr4_1:41064631-41064650 | None:intergenic | 25.0% |
| !!! | GATTTGTTACTGTACATTAT+TGG | - | chr4_1:41064776-41064795 | None:intergenic | 25.0% |
| ! | TTAATACAAGACACTATATG+AGG | - | chr4_1:41065072-41065091 | None:intergenic | 25.0% |
| AATTATAATAGCTGTAGCAG+CGG | + | chr4_1:41059435-41059454 | Msa0547710:CDS | 30.0% | |
| CAGCAAACAAAGTAGAAAAA+GGG | - | chr4_1:41059551-41059570 | None:intergenic | 30.0% | |
| TCAGCAAACAAAGTAGAAAA+AGG | - | chr4_1:41059552-41059571 | None:intergenic | 30.0% | |
| GAATTGCTTGATCAAGAAAA+TGG | + | chr4_1:41059570-41059589 | Msa0547710:CDS | 30.0% | |
| GAGGAAGATGATATTGTAAA+CGG | - | chr4_1:41059644-41059663 | None:intergenic | 30.0% | |
| ATGTTGAATCTAATGCAAGT+AGG | + | chr4_1:41059816-41059835 | Msa0547710:intron | 30.0% | |
| TGTTGAATCTAATGCAAGTA+GGG | + | chr4_1:41059817-41059836 | Msa0547710:intron | 30.0% | |
| ! | GATCATTCAAAAAGCCTTTT+AGG | + | chr4_1:41059976-41059995 | Msa0547710:intron | 30.0% |
| ! | AAACTTTTAAACAGGTTAGC+AGG | + | chr4_1:41060300-41060319 | Msa0547710:intron | 30.0% |
| AACACGTTTAAATTCCAAGT+TGG | + | chr4_1:41060501-41060520 | Msa0547710:intron | 30.0% | |
| TAATATGGAGGTTAAAATCG+TGG | - | chr4_1:41060566-41060585 | None:intergenic | 30.0% | |
| ACCTCCATATTAACAAAATC+CGG | + | chr4_1:41060574-41060593 | Msa0547710:intron | 30.0% | |
| !!! | ACACAATGATTTTAACTCTC+CGG | - | chr4_1:41060596-41060615 | None:intergenic | 30.0% |
| AAAAAAGCGATGATGAAATG+GGG | - | chr4_1:41060638-41060657 | None:intergenic | 30.0% | |
| TTCTTCTTAAACAACTAGGA+AGG | + | chr4_1:41060711-41060730 | Msa0547710:intron | 30.0% | |
| !!! | TTTTTTTTTTAGAGGAGTGG+AGG | + | chr4_1:41061036-41061055 | Msa0547710:intron | 30.0% |
| AGGAGTTAACAAAAGATGAA+AGG | + | chr4_1:41061056-41061075 | Msa0547710:intron | 30.0% | |
| GGAGTTAACAAAAGATGAAA+GGG | + | chr4_1:41061057-41061076 | Msa0547710:intron | 30.0% | |
| CTTATAAGATCAGTTTGGAA+CGG | - | chr4_1:41061098-41061117 | None:intergenic | 30.0% | |
| TGTGACAATGTGTTTATAAG+TGG | - | chr4_1:41061324-41061343 | None:intergenic | 30.0% | |
| CCATTAAAGAAAATGTTTGG+TGG | - | chr4_1:41061382-41061401 | None:intergenic | 30.0% | |
| ! | CCACCAAACATTTTCTTTAA+TGG | + | chr4_1:41061379-41061398 | Msa0547710:intron | 30.0% |
| CACTCAATGATATAAGATGT+AGG | - | chr4_1:41061499-41061518 | None:intergenic | 30.0% | |
| ACATCTTATATCATTGAGTG+TGG | + | chr4_1:41061499-41061518 | Msa0547710:intron | 30.0% | |
| AAAGAAAGAGAATAAGAACC+AGG | + | chr4_1:41061832-41061851 | Msa0547710:intron | 30.0% | |
| AAGAAAGAGAATAAGAACCA+GGG | + | chr4_1:41061833-41061852 | Msa0547710:intron | 30.0% | |
| !! | ACCCCAAGTTTAATTTTATG+TGG | + | chr4_1:41061968-41061987 | Msa0547710:intron | 30.0% |
| !! | GTGTTAATCCTTTAGTTTGT+GGG | - | chr4_1:41062049-41062068 | None:intergenic | 30.0% |
| ! | GCTAGCAATATTTTATAAGG+TGG | - | chr4_1:41062273-41062292 | None:intergenic | 30.0% |
| CCATTAACTCTCTTTACATA+CGG | - | chr4_1:41062424-41062443 | None:intergenic | 30.0% | |
| ATCAGATAGTCCTTTGTTAA+CGG | + | chr4_1:41062465-41062484 | Msa0547710:intron | 30.0% | |
| AACCAAAATTGTCTACGATT+CGG | - | chr4_1:41062845-41062864 | None:intergenic | 30.0% | |
| GATAAGTTAGTTGAACTGTA+TGG | + | chr4_1:41062869-41062888 | Msa0547710:intron | 30.0% | |
| TAAAATGAAGGACCATACTA+GGG | - | chr4_1:41063120-41063139 | None:intergenic | 30.0% | |
| TTAAAATGAAGGACCATACT+AGG | - | chr4_1:41063121-41063140 | None:intergenic | 30.0% | |
| ! | AGTATGGTCCTTCATTTTAA+AGG | + | chr4_1:41063121-41063140 | Msa0547710:intron | 30.0% |
| !!! | GATTTTAGGATTCTGTAGAA+GGG | - | chr4_1:41063267-41063286 | None:intergenic | 30.0% |
| ! | AAATGATGGTTCTATACTTG+GGG | - | chr4_1:41063289-41063308 | None:intergenic | 30.0% |
| ! | AAGTTTATGGGTTAAATGGA+GGG | - | chr4_1:41063389-41063408 | None:intergenic | 30.0% |
| ! | CTAGAAGTTTATGGGTTAAA+TGG | - | chr4_1:41063393-41063412 | None:intergenic | 30.0% |
| TCCAACAATGTCTTTACTTA+GGG | - | chr4_1:41063434-41063453 | None:intergenic | 30.0% | |
| CAATATGTTGCCGTAAAAAT+AGG | + | chr4_1:41063472-41063491 | Msa0547710:intron | 30.0% | |
| !!! | TTATTTGTTGCTTTTTGGTG+TGG | - | chr4_1:41063537-41063556 | None:intergenic | 30.0% |
| ! | TTTTTCCTGTTATATTGTGG+TGG | - | chr4_1:41063564-41063583 | None:intergenic | 30.0% |
| CTTCATGTTCCTAAATTTCT+TGG | + | chr4_1:41063620-41063639 | Msa0547710:intron | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | - | chr4_1:41064221-41064240 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTCCCCAAATAATG+AGG | + | chr4_1:41064229-41064248 | Msa0547710:intron | 30.0% |
| ATTGGAAGAGATAACTTTGA+GGG | - | chr4_1:41064281-41064300 | None:intergenic | 30.0% | |
| ! | ATGGAGAAAATTTTGTGAAG+AGG | + | chr4_1:41064398-41064417 | Msa0547710:intron | 30.0% |
| TAATGAATCCACCAAATCAA+TGG | + | chr4_1:41064928-41064947 | Msa0547710:CDS | 30.0% | |
| ! | TTAATATGGCTCCATTGATT+TGG | - | chr4_1:41064942-41064961 | None:intergenic | 30.0% |
| TGGAGCCATATTAATAATGA+TGG | + | chr4_1:41064948-41064967 | Msa0547710:CDS | 30.0% | |
| CCTCTCCATCATTATTAATA+TGG | - | chr4_1:41064956-41064975 | None:intergenic | 30.0% | |
| ! | CCATATTAATAATGATGGAG+AGG | + | chr4_1:41064953-41064972 | Msa0547710:CDS | 30.0% |
| GGACAGTTTATTTGATACAT+TGG | + | chr4_1:41065004-41065023 | Msa0547710:CDS | 30.0% | |
| ACACTATATGAGGAATTATG+GGG | - | chr4_1:41065062-41065081 | None:intergenic | 30.0% | |
| GACACTATATGAGGAATTAT+GGG | - | chr4_1:41065063-41065082 | None:intergenic | 30.0% | |
| AGACACTATATGAGGAATTA+TGG | - | chr4_1:41065064-41065083 | None:intergenic | 30.0% | |
| ATTATAATAGCTGTAGCAGC+GGG | + | chr4_1:41059436-41059455 | Msa0547710:CDS | 35.0% | |
| CAAACAAAGTAGAAAAAGGG+CGG | - | chr4_1:41059548-41059567 | None:intergenic | 35.0% | |
| AAAAATTATTGGACGGTCCT+GGG | - | chr4_1:41059749-41059768 | None:intergenic | 35.0% | |
| TAAAAATTATTGGACGGTCC+TGG | - | chr4_1:41059750-41059769 | None:intergenic | 35.0% | |
| AATCTAATGCAAGTAGGGAT+GGG | + | chr4_1:41059822-41059841 | Msa0547710:intron | 35.0% | |
| ! | TTTTTGAATGATCTGTGGCT+TGG | - | chr4_1:41059969-41059988 | None:intergenic | 35.0% |
| ! | AAGGCTTTTTGAATGATCTG+TGG | - | chr4_1:41059974-41059993 | None:intergenic | 35.0% |
| TTTAAATAGGTCGGCCTAAA+AGG | - | chr4_1:41059993-41060012 | None:intergenic | 35.0% | |
| !!! | TTACTTTTTAGGCTTGAGTC+TGG | - | chr4_1:41060347-41060366 | None:intergenic | 35.0% |
| AAACGTGTTCCTAATATCTG+AGG | - | chr4_1:41060490-41060509 | None:intergenic | 35.0% | |
| TGAAAAATGACTCTCCAACT+TGG | - | chr4_1:41060518-41060537 | None:intergenic | 35.0% | |
| ! | TCCGGATTTTGTTAATATGG+AGG | - | chr4_1:41060578-41060597 | None:intergenic | 35.0% |
| ! | CTCTCCGGATTTTGTTAATA+TGG | - | chr4_1:41060581-41060600 | None:intergenic | 35.0% |
| TGCAATATTTCACAAGTGTG+AGG | + | chr4_1:41060740-41060759 | Msa0547710:intron | 35.0% | |
| AATTCAACGTCTTTAACCGT+CGG | - | chr4_1:41060813-41060832 | None:intergenic | 35.0% | |
| TAGACTATGCACAACAATTG+AGG | - | chr4_1:41060941-41060960 | None:intergenic | 35.0% | |
| TTGTGCATAGTCTACTAGTA+GGG | + | chr4_1:41060947-41060966 | Msa0547710:intron | 35.0% | |
| GTCTCTTAGAAATCATGGTT+GGG | + | chr4_1:41061253-41061272 | Msa0547710:intron | 35.0% | |
| GACAATGTGTTTATAAGTGG+AGG | - | chr4_1:41061321-41061340 | None:intergenic | 35.0% | |
| CATTGTTAAGAGTCCTACAT+CGG | - | chr4_1:41061358-41061377 | None:intergenic | 35.0% | |
| ATATCATTGAGTGTGGACAT+CGG | + | chr4_1:41061506-41061525 | Msa0547710:intron | 35.0% | |
| !!! | CAGTTTTTTTGACAGAGATC+TGG | - | chr4_1:41061588-41061607 | None:intergenic | 35.0% |
| GTTAACTCTATGTGTCATGT+CGG | + | chr4_1:41061678-41061697 | Msa0547710:intron | 35.0% | |
| TTAACTCTATGTGTCATGTC+GGG | + | chr4_1:41061679-41061698 | Msa0547710:intron | 35.0% | |
| AGAAAGAGAATAAGAACCAG+GGG | + | chr4_1:41061834-41061853 | Msa0547710:intron | 35.0% | |
| ! | TTTTGTCTCCCACAAACTAA+AGG | + | chr4_1:41062038-41062057 | Msa0547710:intron | 35.0% |
| !! | GGTGTTAATCCTTTAGTTTG+TGG | - | chr4_1:41062050-41062069 | None:intergenic | 35.0% |
| CCGTATGTAAAGAGAGTTAA+TGG | + | chr4_1:41062421-41062440 | Msa0547710:intron | 35.0% | |
| ATGTTACTCTCCGTTAACAA+AGG | - | chr4_1:41062478-41062497 | None:intergenic | 35.0% | |
| ATAGAAGCAAGAGAAATCAG+AGG | + | chr4_1:41062569-41062588 | Msa0547710:CDS | 35.0% | |
| GTAGTTGAACCATAACTTAG+AGG | - | chr4_1:41062773-41062792 | None:intergenic | 35.0% | |
| !!! | TCGTAGACAATTTTGGTTCA+TGG | + | chr4_1:41062847-41062866 | Msa0547710:intron | 35.0% |
| AGTTAGTTGAACTGTATGGT+TGG | + | chr4_1:41062873-41062892 | Msa0547710:intron | 35.0% | |
| GTTAGTTGAACTGTATGGTT+GGG | + | chr4_1:41062874-41062893 | Msa0547710:intron | 35.0% | |
| !!! | GGGCTTGGTTTTTAAAACAT+TGG | + | chr4_1:41062894-41062913 | Msa0547710:intron | 35.0% |
| !!! | TGTTTTGTTTGTGAGTTTGG+AGG | + | chr4_1:41063049-41063068 | Msa0547710:intron | 35.0% |
| !!! | GTTTTGTTTGTGAGTTTGGA+GGG | + | chr4_1:41063050-41063069 | Msa0547710:intron | 35.0% |
| !! | TTTTGTTTGTGAGTTTGGAG+GGG | + | chr4_1:41063051-41063070 | Msa0547710:intron | 35.0% |
| AAAATGAAGGACCATACTAG+GGG | - | chr4_1:41063119-41063138 | None:intergenic | 35.0% | |
| !!! | GGATTTTAGGATTCTGTAGA+AGG | - | chr4_1:41063268-41063287 | None:intergenic | 35.0% |
| ! | GTTCTATACTTGGGGATTTT+AGG | - | chr4_1:41063281-41063300 | None:intergenic | 35.0% |
| AGAAGAAGAAGACAGTAGTA+GGG | - | chr4_1:41063338-41063357 | None:intergenic | 35.0% | |
| TAGAAGAAGAAGACAGTAGT+AGG | - | chr4_1:41063339-41063358 | None:intergenic | 35.0% | |
| ! | AGTTTATGGGTTAAATGGAG+GGG | - | chr4_1:41063388-41063407 | None:intergenic | 35.0% |
| ! | GAAGTTTATGGGTTAAATGG+AGG | - | chr4_1:41063390-41063409 | None:intergenic | 35.0% |
| TCCCTAAGTAAAGACATTGT+TGG | + | chr4_1:41063430-41063449 | Msa0547710:intron | 35.0% | |
| CTCCAACAATGTCTTTACTT+AGG | - | chr4_1:41063435-41063454 | None:intergenic | 35.0% | |
| AACTACCACCACAATATAAC+AGG | + | chr4_1:41063556-41063575 | Msa0547710:intron | 35.0% | |
| CTAAATTTCTTGGATGCAGA+CGG | + | chr4_1:41063630-41063649 | Msa0547710:intron | 35.0% | |
| TAAATTTCTTGGATGCAGAC+GGG | + | chr4_1:41063631-41063650 | Msa0547710:intron | 35.0% | |
| !! | TCATTTTAAAGGTCCACTCA+TGG | - | chr4_1:41064028-41064047 | None:intergenic | 35.0% |
| ! | CAAGTTTTCCCTGTATTTCT+CGG | - | chr4_1:41064070-41064089 | None:intergenic | 35.0% |
| ! | ATTGTATTGGATGAGGGTTT+TGG | - | chr4_1:41064208-41064227 | None:intergenic | 35.0% |
| CATTGGAAGAGATAACTTTG+AGG | - | chr4_1:41064282-41064301 | None:intergenic | 35.0% | |
| GTGGAAGAAATAGAAGACAT+TGG | - | chr4_1:41064299-41064318 | None:intergenic | 35.0% | |
| GAGTTTGGAGATAAAAGGAA+GGG | - | chr4_1:41064348-41064367 | None:intergenic | 35.0% | |
| TTTGCGAGTTTGGAGATAAA+AGG | - | chr4_1:41064353-41064372 | None:intergenic | 35.0% | |
| !!! | TTAGGTTTTGTTTGCGAGTT+TGG | - | chr4_1:41064363-41064382 | None:intergenic | 35.0% |
| AAACTCGCAAACAAAACCTA+AGG | + | chr4_1:41064362-41064381 | Msa0547710:intron | 35.0% | |
| AACTCGCAAACAAAACCTAA+GGG | + | chr4_1:41064363-41064382 | Msa0547710:intron | 35.0% | |
| !! | AATTTTGGTGTGACACTTTG+TGG | + | chr4_1:41064657-41064676 | Msa0547710:intron | 35.0% |
| TTGGGAATCAGTATGTTTGT+AGG | + | chr4_1:41064844-41064863 | Msa0547710:intron | 35.0% | |
| GTATGTTTGTAGGAAGACAT+TGG | + | chr4_1:41064854-41064873 | Msa0547710:intron | 35.0% | |
| AAGATGAGGAAGAAGAGAAT+TGG | + | chr4_1:41064982-41065001 | Msa0547710:CDS | 35.0% | |
| AGATGAGGAAGAAGAGAATT+GGG | + | chr4_1:41064983-41065002 | Msa0547710:CDS | 35.0% | |
| !!! | CTTTCGCTTTTTAAGCATCT+TGG | + | chr4_1:41065261-41065280 | Msa0547710:intron | 35.0% |
| TGGTTCATTGTGATCAAAGT+AGG | + | chr4_1:41065281-41065300 | Msa0547710:intron | 35.0% | |
| TAATGCTCCTCTGCATCAAT+CGG | - | chr4_1:41059488-41059507 | None:intergenic | 40.0% | |
| ! | CATCATTCTTTTGCAGAGAG+TGG | - | chr4_1:41059515-41059534 | None:intergenic | 40.0% |
| GCTTGATCAAGAAAATGGTC+CGG | + | chr4_1:41059575-41059594 | Msa0547710:CDS | 40.0% | |
| GAATCTAATGCAAGTAGGGA+TGG | + | chr4_1:41059821-41059840 | Msa0547710:intron | 40.0% | |
| GCTTAGGCCTTCAAACAAAT+TGG | + | chr4_1:41060390-41060409 | Msa0547710:intron | 40.0% | |
| AGTCCAAACCCTTGGATTTA+GGG | - | chr4_1:41060467-41060486 | None:intergenic | 40.0% | |
| GTTTGGACTCCTCAGATATT+AGG | + | chr4_1:41060478-41060497 | Msa0547710:intron | 40.0% | |
| ! | GTCTACAATTTTATCGCCGA+CGG | + | chr4_1:41060794-41060813 | Msa0547710:intron | 40.0% |
| GTTGTGCATAGTCTACTAGT+AGG | + | chr4_1:41060946-41060965 | Msa0547710:intron | 40.0% | |
| GAGACGTCTCTTAGAAATCA+TGG | + | chr4_1:41061248-41061267 | Msa0547710:intron | 40.0% | |
| CGTCTCTTAGAAATCATGGT+TGG | + | chr4_1:41061252-41061271 | Msa0547710:intron | 40.0% | |
| ATAAGATGTAGGCAATTGCG+TGG | - | chr4_1:41061488-41061507 | None:intergenic | 40.0% | |
| TAACTCTATGTGTCATGTCG+GGG | + | chr4_1:41061680-41061699 | Msa0547710:intron | 40.0% | |
| ! | AGCCGAATCGTAGACAATTT+TGG | + | chr4_1:41062840-41062859 | Msa0547710:intron | 40.0% |
| !! | TGGGTGGACCTTTAAAATGA+AGG | - | chr4_1:41063132-41063151 | None:intergenic | 40.0% |
| ! | TAATTGAAGGTCGCTTTGAG+GGG | - | chr4_1:41063159-41063178 | None:intergenic | 40.0% |
| ! | GTAATTGAAGGTCGCTTTGA+GGG | - | chr4_1:41063160-41063179 | None:intergenic | 40.0% |
| ! | TGTAATTGAAGGTCGCTTTG+AGG | - | chr4_1:41063161-41063180 | None:intergenic | 40.0% |
| TCAAAGCGACCTTCAATTAC+AGG | + | chr4_1:41063160-41063179 | Msa0547710:intron | 40.0% | |
| CGTCTGCATCCAAGAAATTT+AGG | - | chr4_1:41063632-41063651 | None:intergenic | 40.0% | |
| ! | TTGCTGTGTTGTTCTCTTTG+TGG | - | chr4_1:41063812-41063831 | None:intergenic | 40.0% |
| CTCTCTTTCTCTCTCTTCAT+CGG | - | chr4_1:41063849-41063868 | None:intergenic | 40.0% | |
| GGAGGGTTTGGAAAAAATGA+AGG | - | chr4_1:41064327-41064346 | None:intergenic | 40.0% | |
| TTGGAGATAAAAGGAAGGGA+GGG | - | chr4_1:41064344-41064363 | None:intergenic | 40.0% | |
| TTTGGAGATAAAAGGAAGGG+AGG | - | chr4_1:41064345-41064364 | None:intergenic | 40.0% | |
| CGAGTTTGGAGATAAAAGGA+AGG | - | chr4_1:41064349-41064368 | None:intergenic | 40.0% | |
| CATTCATTGGAGTTTCCCTT+AGG | - | chr4_1:41064381-41064400 | None:intergenic | 40.0% | |
| CTAAGGGAAACTCCAATGAA+TGG | + | chr4_1:41064379-41064398 | Msa0547710:intron | 40.0% | |
| !! | ATATGGCTCCATTGATTTGG+TGG | - | chr4_1:41064939-41064958 | None:intergenic | 40.0% |
| TGGAGAGGAATTAGAAGATG+AGG | + | chr4_1:41064968-41064987 | Msa0547710:CDS | 40.0% | |
| ! | TCATGAGCAAGATTTGGAGT+AGG | - | chr4_1:41065032-41065051 | None:intergenic | 40.0% |
| ACAAAGTAGAAAAAGGGCGG+TGG | - | chr4_1:41059545-41059564 | None:intergenic | 45.0% | |
| ATCAAGAAAATGGTCCGGTG+CGG | + | chr4_1:41059580-41059599 | Msa0547710:CDS | 45.0% | |
| !! | CAGTACTGGTGATCTTGATC+AGG | + | chr4_1:41059611-41059630 | Msa0547710:CDS | 45.0% |
| AGCTAGACATCCGTTTGTAG+AGG | + | chr4_1:41059711-41059730 | Msa0547710:intron | 45.0% | |
| CGAATCTACGCCTCTACAAA+CGG | - | chr4_1:41059724-41059743 | None:intergenic | 45.0% | |
| ATGCAAGTAGGGATGGGAAT+AGG | + | chr4_1:41059828-41059847 | Msa0547710:intron | 45.0% | |
| GAAAAAAGTTTGGTCTGGCC+TGG | - | chr4_1:41059896-41059915 | None:intergenic | 45.0% | |
| TTTGTTTGAAGGCCTAAGCC+TGG | - | chr4_1:41060389-41060408 | None:intergenic | 45.0% | |
| AGGCCTTCAAACAAATTGGC+AGG | + | chr4_1:41060394-41060413 | Msa0547710:intron | 45.0% | |
| ! | TGGCCTGCCAATTTGTTTGA+AGG | - | chr4_1:41060400-41060419 | None:intergenic | 45.0% |
| TTCAAACAAATTGGCAGGCC+AGG | + | chr4_1:41060399-41060418 | Msa0547710:intron | 45.0% | |
| TTGGATTTAGGGGTGGGAAT+AGG | - | chr4_1:41060456-41060475 | None:intergenic | 45.0% | |
| TATTCCCACCCCTAAATCCA+AGG | + | chr4_1:41060455-41060474 | Msa0547710:intron | 45.0% | |
| ATTCCCACCCCTAAATCCAA+GGG | + | chr4_1:41060456-41060475 | Msa0547710:intron | 45.0% | |
| AAACCCTTGGATTTAGGGGT+GGG | - | chr4_1:41060462-41060481 | None:intergenic | 45.0% | |
| GTCCAAACCCTTGGATTTAG+GGG | - | chr4_1:41060466-41060485 | None:intergenic | 45.0% | |
| GAGTCCAAACCCTTGGATTT+AGG | - | chr4_1:41060468-41060487 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+TGG | + | chr4_1:41061277-41061296 | Msa0547710:intron | 45.0% | |
| !! | ACCTCACAAGCCAGTTTTGT+GGG | - | chr4_1:41061290-41061309 | None:intergenic | 45.0% |
| CACCATCTCATATCCGATGT+AGG | + | chr4_1:41061342-41061361 | Msa0547710:intron | 45.0% | |
| GTCCTACATCGGATATGAGA+TGG | - | chr4_1:41061347-41061366 | None:intergenic | 45.0% | |
| !! | TAATGGAGTAATGGACACCC+TGG | + | chr4_1:41061396-41061415 | Msa0547710:intron | 45.0% |
| AACTCTATGTGTCATGTCGG+GGG | + | chr4_1:41061681-41061700 | Msa0547710:intron | 45.0% | |
| AAGAGAATAAGAACCAGGGG+CGG | + | chr4_1:41061837-41061856 | Msa0547710:intron | 45.0% | |
| ! | TTCTTTTCCTCTGGGCTGTA+AGG | - | chr4_1:41062532-41062551 | None:intergenic | 45.0% |
| TTACAGCCCAGAGGAAAAGA+AGG | + | chr4_1:41062531-41062550 | Msa0547710:CDS | 45.0% | |
| ! | TCCTCACCTTCTTTTCCTCT+GGG | - | chr4_1:41062540-41062559 | None:intergenic | 45.0% |
| ! | ATCCTCACCTTCTTTTCCTC+TGG | - | chr4_1:41062541-41062560 | None:intergenic | 45.0% |
| TTGAACTGTATGGTTGGGCT+TGG | + | chr4_1:41062879-41062898 | Msa0547710:intron | 45.0% | |
| TTTGTGAGTTTGGAGGGGAA+AGG | + | chr4_1:41063056-41063075 | Msa0547710:intron | 45.0% | |
| AAGGAAGGAAGGAAGGACTT+TGG | + | chr4_1:41063075-41063094 | Msa0547710:intron | 45.0% | |
| AGGAAGGAAGGAAGGACTTT+GGG | + | chr4_1:41063076-41063095 | Msa0547710:intron | 45.0% | |
| ! | GACTTTGGGGGTGAGAAATA+CGG | + | chr4_1:41063090-41063109 | Msa0547710:intron | 45.0% |
| AAATACGGAAGCCCCTAGTA+TGG | + | chr4_1:41063105-41063124 | Msa0547710:intron | 45.0% | |
| TAGGGATGAACAGAGAAGAC+GGG | - | chr4_1:41063320-41063339 | None:intergenic | 45.0% | |
| GTAGGGATGAACAGAGAAGA+CGG | - | chr4_1:41063321-41063340 | None:intergenic | 45.0% | |
| TCCCAAACTCTATAAACGCG+TGG | + | chr4_1:41063654-41063673 | Msa0547710:intron | 45.0% | |
| GCCACGCGTTTATAGAGTTT+GGG | - | chr4_1:41063658-41063677 | None:intergenic | 45.0% | |
| CGATGAAGAGAGAGAAAGAG+AGG | + | chr4_1:41063847-41063866 | Msa0547710:intron | 45.0% | |
| TGAAGAGAGAGAAAGAGAGG+AGG | + | chr4_1:41063850-41063869 | Msa0547710:intron | 45.0% | |
| !! | CATTTTAAGGGGACCATGAG+TGG | + | chr4_1:41064012-41064031 | Msa0547710:intron | 45.0% |
| TTTCTCGGAAGCCCCTAATA+TGG | - | chr4_1:41064055-41064074 | None:intergenic | 45.0% | |
| GATAAAAGGAAGGGAGGGTT+TGG | - | chr4_1:41064339-41064358 | None:intergenic | 45.0% | |
| TTTGCATGGTAGAGTCTTGC+AGG | + | chr4_1:41064605-41064624 | Msa0547710:intron | 45.0% | |
| ACAGTAGGCCACGTATTAGA+GGG | + | chr4_1:41064880-41064899 | Msa0547710:CDS | 45.0% | |
| GCAAATCTCCCTCTAATACG+TGG | - | chr4_1:41064891-41064910 | None:intergenic | 45.0% | |
| GACTCGTCATGAGCAAGATT+TGG | - | chr4_1:41065038-41065057 | None:intergenic | 45.0% | |
| !! | TTATTCATATTTATTTAAAT+AGG | - | chr4_1:41060006-41060025 | None:intergenic | 5.0% |
| !!! | ATATTATTTATATGATTTTT+GGG | - | chr4_1:41061561-41061580 | None:intergenic | 5.0% |
| !! | TAAATAAAAAAAATTATATG+TGG | + | chr4_1:41062247-41062266 | Msa0547710:intron | 5.0% |
| ! | TGGTTGTGCTGCTGCATATC+AGG | - | chr4_1:41059360-41059379 | None:intergenic | 50.0% |
| CGGATGTCTAGCTGATGAGA+TGG | - | chr4_1:41059704-41059723 | None:intergenic | 50.0% | |
| GCTAGGCCATATGCAACTGT+AGG | - | chr4_1:41059863-41059882 | None:intergenic | 50.0% | |
| ! | GGCCTTCTGAAAGCCTGATA+CGG | - | chr4_1:41060326-41060345 | None:intergenic | 50.0% |
| AGGTCTTGCAAAGCCTAGCT+CGG | + | chr4_1:41060425-41060444 | Msa0547710:intron | 50.0% | |
| TTTAGGGGTGGGAATAGGCT+AGG | - | chr4_1:41060451-41060470 | None:intergenic | 50.0% | |
| CAAACCCTTGGATTTAGGGG+TGG | - | chr4_1:41060463-41060482 | None:intergenic | 50.0% | |
| CACCCCTAAATCCAAGGGTT+TGG | + | chr4_1:41060461-41060480 | Msa0547710:intron | 50.0% | |
| ATCTGAGGAGTCCAAACCCT+TGG | - | chr4_1:41060475-41060494 | None:intergenic | 50.0% | |
| !! | CCTCACAAGCCAGTTTTGTG+GGG | - | chr4_1:41061289-41061308 | None:intergenic | 50.0% |
| ! | CACCTCACAAGCCAGTTTTG+TGG | - | chr4_1:41061291-41061310 | None:intergenic | 50.0% |
| !! | CAAAACTGGCTTGTGAGGTG+AGG | + | chr4_1:41061291-41061310 | Msa0547710:intron | 50.0% |
| GCGGATGCTTGTGCATGAAA+GGG | + | chr4_1:41061856-41061875 | Msa0547710:intron | 50.0% | |
| CGGATGCTTGTGCATGAAAG+GGG | + | chr4_1:41061857-41061876 | Msa0547710:intron | 50.0% | |
| GTGCATGAAAGGGGTAGCTA+TGG | + | chr4_1:41061866-41061885 | Msa0547710:intron | 50.0% | |
| CCATAACTTAGAGGTCTCGC+CGG | - | chr4_1:41062764-41062783 | None:intergenic | 50.0% | |
| TGAGTTTGGAGGGGAAAGGA+AGG | + | chr4_1:41063060-41063079 | Msa0547710:intron | 50.0% | |
| TTTGGAGGGGAAAGGAAGGA+AGG | + | chr4_1:41063064-41063083 | Msa0547710:intron | 50.0% | |
| GGAAGGAAGGAAGGACTTTG+GGG | + | chr4_1:41063077-41063096 | Msa0547710:intron | 50.0% | |
| GAAGGAAGGAAGGACTTTGG+GGG | + | chr4_1:41063078-41063097 | Msa0547710:intron | 50.0% | |
| GACGGGGAGGAGTAAAATGA+TGG | - | chr4_1:41063303-41063322 | None:intergenic | 50.0% | |
| AGGGATGAACAGAGAAGACG+GGG | - | chr4_1:41063319-41063338 | None:intergenic | 50.0% | |
| ! | TGGGTTAAATGGAGGGGTGT+GGG | - | chr4_1:41063382-41063401 | None:intergenic | 50.0% |
| ! | ATGGGTTAAATGGAGGGGTG+TGG | - | chr4_1:41063383-41063402 | None:intergenic | 50.0% |
| GGCCACGCGTTTATAGAGTT+TGG | - | chr4_1:41063659-41063678 | None:intergenic | 50.0% | |
| TAGGGGCTTCCGAGAAATAC+AGG | + | chr4_1:41064058-41064077 | Msa0547710:intron | 50.0% | |
| AGGGGCTTCCGAGAAATACA+GGG | + | chr4_1:41064059-41064078 | Msa0547710:intron | 50.0% | |
| GGAAGACATTGGCAGACAGT+AGG | + | chr4_1:41064865-41064884 | Msa0547710:CDS | 50.0% | |
| GACAGTAGGCCACGTATTAG+AGG | + | chr4_1:41064879-41064898 | Msa0547710:CDS | 50.0% | |
| ATGCAGCAGCACAACCACCT+CGG | + | chr4_1:41059363-41059382 | Msa0547710:CDS | 55.0% | |
| CCACCTCGGTGAATACGAGT+CGG | + | chr4_1:41059377-41059396 | Msa0547710:CDS | 55.0% | |
| CACCACCAGAGTTGAGCTGT+GGG | - | chr4_1:41059404-41059423 | None:intergenic | 55.0% | |
| AGCGGGTGCACTAGCTACTT+GGG | + | chr4_1:41059453-41059472 | Msa0547710:intron | 55.0% | |
| CTCCTCTGCATCAATCGGTC+CGG | - | chr4_1:41059483-41059502 | None:intergenic | 55.0% | |
| GTAGAAAAAGGGCGGTGGTG+TGG | - | chr4_1:41059540-41059559 | None:intergenic | 55.0% | |
| GTACTGTAAACTCGCCGCAC+CGG | - | chr4_1:41059597-41059616 | None:intergenic | 55.0% | |
| GTGCGGCGAGTTTACAGTAC+TGG | + | chr4_1:41059597-41059616 | Msa0547710:CDS | 55.0% | |
| ! | AGAGGCGTAGATTCGAACCC+AGG | + | chr4_1:41059729-41059748 | Msa0547710:intron | 55.0% |
| AGTAGGGATGGGAATAGGCC+AGG | + | chr4_1:41059833-41059852 | Msa0547710:intron | 55.0% | |
| GGCCATATGCAACTGTAGGC+CGG | - | chr4_1:41059859-41059878 | None:intergenic | 55.0% | |
| ACAGGTTAGCAGGCCGTATC+AGG | + | chr4_1:41060310-41060329 | Msa0547710:intron | 55.0% | |
| GGCCGTATCAGGCTTTCAGA+AGG | + | chr4_1:41060321-41060340 | Msa0547710:intron | 55.0% | |
| !! | CCCCACAAAACTGGCTTGTG+AGG | + | chr4_1:41061286-41061305 | Msa0547710:intron | 55.0% |
| GAGTGTGGACATCGGTCTCA+AGG | + | chr4_1:41061514-41061533 | Msa0547710:intron | 55.0% | |
| GGCGGATGCTTGTGCATGAA+AGG | + | chr4_1:41061855-41061874 | Msa0547710:intron | 55.0% | |
| TTCCTCTGGGCTGTAAGGAC+TGG | - | chr4_1:41062527-41062546 | None:intergenic | 55.0% | |
| GCCCAGAGGAAAAGAAGGTG+AGG | + | chr4_1:41062536-41062555 | Msa0547710:CDS | 55.0% | |
| CCGGCGAGACCTCTAAGTTA+TGG | + | chr4_1:41062761-41062780 | Msa0547710:intron | 55.0% | |
| GAGGGGAAAGGAAGGAAGGA+AGG | + | chr4_1:41063068-41063087 | Msa0547710:intron | 55.0% | |
| !! | GGTCGCTTTGAGGGGAGTAT+GGG | - | chr4_1:41063151-41063170 | None:intergenic | 55.0% |
| !! | AGGTCGCTTTGAGGGGAGTA+TGG | - | chr4_1:41063152-41063171 | None:intergenic | 55.0% |
| GATGAACAGAGAAGACGGGG+AGG | - | chr4_1:41063316-41063335 | None:intergenic | 55.0% | |
| ! | GTTAAATGGAGGGGTGTGGG+TGG | - | chr4_1:41063379-41063398 | None:intergenic | 55.0% |
| CTGCTGCATATCAGGCGTGG+TGG | - | chr4_1:41059352-41059371 | None:intergenic | 60.0% | |
| ! | GTGCTGCTGCATATCAGGCG+TGG | - | chr4_1:41059355-41059374 | None:intergenic | 60.0% |
| ! | CCGACTCGTATTCACCGAGG+TGG | - | chr4_1:41059380-41059399 | None:intergenic | 60.0% |
| !! | GGACCGACTCGTATTCACCG+AGG | - | chr4_1:41059383-41059402 | None:intergenic | 60.0% |
| TCGGTCCCACAGCTCAACTC+TGG | + | chr4_1:41059396-41059415 | Msa0547710:CDS | 60.0% | |
| GTCCCACAGCTCAACTCTGG+TGG | + | chr4_1:41059399-41059418 | Msa0547710:CDS | 60.0% | |
| CCACCACCAGAGTTGAGCTG+TGG | - | chr4_1:41059405-41059424 | None:intergenic | 60.0% | |
| CCACAGCTCAACTCTGGTGG+TGG | + | chr4_1:41059402-41059421 | Msa0547710:CDS | 60.0% | |
| !! | CAGCTCAACTCTGGTGGTGG+TGG | + | chr4_1:41059405-41059424 | Msa0547710:CDS | 60.0% |
| !! | CTCAACTCTGGTGGTGGTGG+TGG | + | chr4_1:41059408-41059427 | Msa0547710:CDS | 60.0% |
| !! | AACTCTGGTGGTGGTGGTGG+TGG | + | chr4_1:41059411-41059430 | Msa0547710:CDS | 60.0% |
| CAGCGGGTGCACTAGCTACT+TGG | + | chr4_1:41059452-41059471 | Msa0547710:intron | 60.0% | |
| GCGGGTGCACTAGCTACTTG+GGG | + | chr4_1:41059454-41059473 | Msa0547710:intron | 60.0% | |
| CACTAGCTACTTGGGGTCGC+CGG | + | chr4_1:41059461-41059480 | Msa0547710:intron | 60.0% | |
| TATGCAACTGTAGGCCGGCC+TGG | - | chr4_1:41059854-41059873 | None:intergenic | 60.0% | |
| GGCCGGCCTACAGTTGCATA+TGG | + | chr4_1:41059854-41059873 | Msa0547710:intron | 60.0% | |
| CTTATGAAAGGCCGCACGCC+AGG | + | chr4_1:41060368-41060387 | Msa0547710:intron | 60.0% | |
| CAAATTGGCAGGCCAGGCTC+AGG | + | chr4_1:41060405-41060424 | Msa0547710:intron | 60.0% | |
| GGCTTTGCAAGACCTGAGCC+TGG | - | chr4_1:41060420-41060439 | None:intergenic | 60.0% | |
| GGAATAGGCTAGGCCGAGCT+AGG | - | chr4_1:41060441-41060460 | None:intergenic | 60.0% | |
| AGCCAGTCCTTACAGCCCAG+AGG | + | chr4_1:41062522-41062541 | Msa0547710:CDS | 60.0% | |
| !! | CGCTTTGAGGGGAGTATGGG+TGG | - | chr4_1:41063148-41063167 | None:intergenic | 60.0% |
| CGCCGGACCGATTGATGCAG+AGG | + | chr4_1:41059478-41059497 | Msa0547710:CDS | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | + | chr4_1:41059837-41059856 | Msa0547710:intron | 65.0% | |
| GGCCTAGCGTACGACATGCC+AGG | + | chr4_1:41059875-41059894 | Msa0547710:intron | 65.0% | |
| GGCCTGGCATGTCGTACGCT+AGG | - | chr4_1:41059880-41059899 | None:intergenic | 65.0% | |
| AAAGGCCGCACGCCAGGCTT+AGG | + | chr4_1:41060374-41060393 | Msa0547710:intron | 65.0% | |
| GAAGGCCTAAGCCTGGCGTG+CGG | - | chr4_1:41060382-41060401 | None:intergenic | 65.0% | |
| CATGCACAAGCATCCGCCCC+TGG | - | chr4_1:41061853-41061872 | None:intergenic | 65.0% | |
| ! | TGGAGGGGTGTGGGTGGTGA+AGG | - | chr4_1:41063373-41063392 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 41059321 | 41065335 | 41059321 | ID=Msa0547710;Name=Msa0547710 |
| chr4_1 | mRNA | 41059321 | 41065335 | 41059321 | ID=Msa0547710-mRNA-1;Parent=Msa0547710;Name=Msa0547710-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.25|0|0.8|0.25|0.2|5|0|211 |
| chr4_1 | exon | 41059321 | 41059457 | 41059321 | ID=Msa0547710-mRNA-1:exon:10496;Parent=Msa0547710-mRNA-1 |
| chr4_1 | exon | 41059467 | 41059632 | 41059467 | ID=Msa0547710-mRNA-1:exon:10497;Parent=Msa0547710-mRNA-1 |
| chr4_1 | exon | 41062490 | 41062612 | 41062490 | ID=Msa0547710-mRNA-1:exon:10498;Parent=Msa0547710-mRNA-1 |
| chr4_1 | exon | 41064855 | 41065054 | 41064855 | ID=Msa0547710-mRNA-1:exon:10499;Parent=Msa0547710-mRNA-1 |
| chr4_1 | exon | 41065326 | 41065335 | 41065326 | ID=Msa0547710-mRNA-1:exon:10500;Parent=Msa0547710-mRNA-1 |
| chr4_1 | CDS | 41059321 | 41059457 | 41059321 | ID=Msa0547710-mRNA-1:cds;Parent=Msa0547710-mRNA-1 |
| chr4_1 | CDS | 41059467 | 41059632 | 41059467 | ID=Msa0547710-mRNA-1:cds;Parent=Msa0547710-mRNA-1 |
| chr4_1 | CDS | 41062490 | 41062612 | 41062490 | ID=Msa0547710-mRNA-1:cds;Parent=Msa0547710-mRNA-1 |
| chr4_1 | CDS | 41064855 | 41065054 | 41064855 | ID=Msa0547710-mRNA-1:cds;Parent=Msa0547710-mRNA-1 |
| chr4_1 | CDS | 41065326 | 41065335 | 41065326 | ID=Msa0547710-mRNA-1:cds;Parent=Msa0547710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
