Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548310 | KEH30134.1 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 2.33e-178 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548310 | sp|Q6X7K1|WOX2_ARATH | 40.856 | 257 | 115 | 8 | 17 | 250 | 6 | 248 | 2.34e-52 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548310 | A0A072UK53 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 1.11e-178 | 500 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0548310 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548310 | MtrunA17_Chr4g0031341 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 0.0 | 500 |
| Msa0548310 | MtrunA17_Chr8g0392991 | 56.383 | 94 | 35 | 2 | 12 | 99 | 80 | 173 | 6.04e-28 | 109 |
| Msa0548310 | MtrunA17_Chr1g0153171 | 35.754 | 179 | 85 | 4 | 20 | 196 | 85 | 235 | 9.56e-27 | 103 |
| Msa0548310 | MtrunA17_Chr4g0043891 | 67.692 | 65 | 21 | 0 | 23 | 87 | 6 | 70 | 4.17e-26 | 102 |
| Msa0548310 | MtrunA17_Chr7g0238431 | 66.667 | 66 | 22 | 0 | 23 | 88 | 6 | 71 | 5.24e-26 | 100 |
| Msa0548310 | MtrunA17_Chr5g0405351 | 68.182 | 66 | 20 | 1 | 22 | 86 | 27 | 92 | 5.03e-25 | 100 |
| Msa0548310 | MtrunA17_Chr5g0436661 | 51.899 | 79 | 37 | 1 | 13 | 90 | 20 | 98 | 2.96e-24 | 95.9 |
| Msa0548310 | MtrunA17_Chr8g0385441 | 65.455 | 55 | 19 | 0 | 34 | 88 | 91 | 145 | 2.74e-20 | 84.7 |
| Msa0548310 | MtrunA17_Chr3g0125111 | 63.636 | 55 | 20 | 0 | 34 | 88 | 89 | 143 | 5.48e-20 | 84.0 |
| Msa0548310 | MtrunA17_Chr2g0283141 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 3.29e-14 | 71.6 |
| Msa0548310 | MtrunA17_Chr7g0223471 | 45.161 | 62 | 34 | 0 | 25 | 86 | 47 | 108 | 1.21e-13 | 70.1 |
| Msa0548310 | MtrunA17_Chr1g0212511 | 46.154 | 65 | 35 | 0 | 20 | 84 | 80 | 144 | 4.72e-13 | 67.0 |
| Msa0548310 | MtrunA17_Chr3g0144021 | 40.909 | 66 | 39 | 0 | 20 | 85 | 77 | 142 | 8.29e-12 | 62.8 |
| Msa0548310 | MtrunA17_Chr7g0222981 | 45.161 | 62 | 34 | 0 | 25 | 86 | 68 | 129 | 2.72e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548310 | AT5G59340.1 | 40.856 | 257 | 115 | 8 | 17 | 250 | 6 | 248 | 2.38e-53 | 173 |
| Msa0548310 | AT3G18010.1 | 45.312 | 128 | 57 | 2 | 20 | 134 | 71 | 198 | 5.86e-29 | 112 |
| Msa0548310 | AT1G46480.1 | 36.994 | 173 | 98 | 3 | 24 | 196 | 89 | 250 | 1.61e-26 | 103 |
| Msa0548310 | AT1G46480.2 | 65.672 | 67 | 23 | 0 | 24 | 90 | 89 | 155 | 3.58e-26 | 101 |
| Msa0548310 | AT2G28610.1 | 62.687 | 67 | 25 | 0 | 22 | 88 | 5 | 71 | 7.61e-25 | 99.4 |
| Msa0548310 | AT3G11260.1 | 50.000 | 80 | 40 | 0 | 13 | 92 | 12 | 91 | 8.35e-25 | 97.4 |
| Msa0548310 | AT5G05770.1 | 54.054 | 74 | 34 | 0 | 21 | 94 | 25 | 98 | 1.03e-24 | 95.5 |
| Msa0548310 | AT2G17950.1 | 63.636 | 66 | 23 | 1 | 22 | 86 | 35 | 100 | 2.29e-23 | 96.3 |
| Msa0548310 | AT2G01500.1 | 64.407 | 59 | 21 | 0 | 21 | 79 | 57 | 115 | 5.65e-22 | 92.4 |
| Msa0548310 | AT5G45980.1 | 51.613 | 62 | 30 | 0 | 25 | 86 | 55 | 116 | 8.03e-15 | 73.2 |
| Msa0548310 | AT1G20700.2 | 40.506 | 79 | 47 | 0 | 13 | 91 | 21 | 99 | 8.23e-15 | 70.1 |
| Msa0548310 | AT1G20700.3 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.88e-14 | 70.5 |
| Msa0548310 | AT1G20700.1 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.96e-14 | 70.5 |
| Msa0548310 | AT2G33880.1 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.43e-14 | 70.5 |
| Msa0548310 | AT2G33880.2 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.58e-14 | 70.5 |
| Msa0548310 | AT4G35550.1 | 40.278 | 72 | 43 | 0 | 14 | 85 | 88 | 159 | 3.04e-13 | 68.2 |
| Msa0548310 | AT1G20710.1 | 50.000 | 54 | 27 | 0 | 32 | 85 | 86 | 139 | 2.07e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATAGGTGAAGGATAAA+TGG | 0.223363 | 4_1:-42170167 | None:intergenic |
| AATCAAGATCATGGTTATAA+TGG | 0.248654 | 4_1:+42171413 | Msa0548310:CDS |
| CTGTAACCAAAGTTATAGTT+AGG | 0.305798 | 4_1:-42171245 | None:intergenic |
| TTCTGCAGGACAAGGTTCTT+AGG | 0.334683 | 4_1:+42171466 | Msa0548310:CDS |
| AGTTCCACTGATACACATTC+TGG | 0.341293 | 4_1:+42171368 | Msa0548310:CDS |
| AACATACCATTTGGACAAAT+AGG | 0.347632 | 4_1:-42170181 | None:intergenic |
| ACTGCATCCAACTGGCATAT+TGG | 0.347683 | 4_1:+42171295 | Msa0548310:CDS |
| ACTGCAGGTAGAAGCACTTT+TGG | 0.360138 | 4_1:-42171122 | None:intergenic |
| TAGCTTATTTCATGACTTTG+TGG | 0.366655 | 4_1:-42171086 | None:intergenic |
| CCTTCACCTATTTGTCCAAA+TGG | 0.376093 | 4_1:+42170175 | Msa0548310:CDS |
| ATCAAGATCATGGTTATAAT+GGG | 0.392817 | 4_1:+42171414 | Msa0548310:CDS |
| ATTAATGAGGAGGGTTCAAA+TGG | 0.414428 | 4_1:+42169887 | Msa0548310:CDS |
| TGTGGTTGTGGTACGCAATA+TGG | 0.424892 | 4_1:-42171068 | None:intergenic |
| ATTTCATGACTTTGTGGTTG+TGG | 0.425330 | 4_1:-42171080 | None:intergenic |
| CAAATAGGTGAAGGATAAAT+GGG | 0.425469 | 4_1:-42170166 | None:intergenic |
| TCTTGTATTTCTTCAGCACT+TGG | 0.437582 | 4_1:-42170001 | None:intergenic |
| TTGTTTCCACTGCATCCAAC+TGG | 0.438638 | 4_1:+42171287 | Msa0548310:CDS |
| AGAATCCCTAACTATAACTT+TGG | 0.443156 | 4_1:+42171239 | Msa0548310:CDS |
| TTCCCTTCCAATATGCCAGT+TGG | 0.473137 | 4_1:-42171302 | None:intergenic |
| GCTGAGAAAGTTATGTCAAA+TGG | 0.482284 | 4_1:+42171164 | Msa0548310:CDS |
| ACTGCTAGGCTTAGAGTGTA+TGG | 0.483688 | 4_1:+42170028 | Msa0548310:CDS |
| TGTAACCAAAGTTATAGTTA+GGG | 0.484125 | 4_1:-42171244 | None:intergenic |
| TTGGAGAATTTGTATAAGCA+AGG | 0.498360 | 4_1:+42169968 | Msa0548310:CDS |
| CATGATATCAATCAAGATCA+TGG | 0.502262 | 4_1:+42171404 | Msa0548310:CDS |
| AAAAGAACAAATAAGTATGT+TGG | 0.504717 | 4_1:+42169949 | Msa0548310:CDS |
| CATCCAACTGGCATATTGGA+AGG | 0.509666 | 4_1:+42171299 | Msa0548310:CDS |
| TTACAGTAATCAAGAAACAT+TGG | 0.520782 | 4_1:+42171262 | Msa0548310:CDS |
| GGTGAAGGATAAATGGGTTG+AGG | 0.539516 | 4_1:-42170160 | None:intergenic |
| TTTAATAATTCTGCAGGACA+AGG | 0.556573 | 4_1:+42171458 | Msa0548310:CDS |
| TTCCTTCTAAAACCTACTGC+AGG | 0.572590 | 4_1:-42171137 | None:intergenic |
| AATAATGAGATTAATGAGGA+GGG | 0.573895 | 4_1:+42169878 | Msa0548310:CDS |
| AGAAGAAGAAGAATAATGGA+GGG | 0.580379 | 4_1:+42169848 | None:intergenic |
| CTGAAACAATAGAAGACACC+TGG | 0.584011 | 4_1:-42171334 | None:intergenic |
| TAATAATGAGATTAATGAGG+AGG | 0.585231 | 4_1:+42169877 | Msa0548310:CDS |
| AAAGTGCTTCTACCTGCAGT+AGG | 0.586289 | 4_1:+42171125 | Msa0548310:CDS |
| AATATGCCAGTTGGATGCAG+TGG | 0.586423 | 4_1:-42171293 | None:intergenic |
| TTAATGAGGAGGGTTCAAAT+GGG | 0.588886 | 4_1:+42169888 | Msa0548310:CDS |
| AGAACCAGAATGTGTATCAG+TGG | 0.599607 | 4_1:-42171372 | None:intergenic |
| AGAGTGTATGGTCACATCGA+AGG | 0.601558 | 4_1:+42170040 | Msa0548310:CDS |
| AAATATCTGCAATAGTCCAA+TGG | 0.604277 | 4_1:+42171193 | Msa0548310:CDS |
| CCATTTGGACAAATAGGTGA+AGG | 0.604508 | 4_1:-42170175 | None:intergenic |
| AAATACAAGAAATCACTGCT+AGG | 0.611419 | 4_1:+42170014 | Msa0548310:CDS |
| GAATAATAATGAGATTAATG+AGG | 0.611694 | 4_1:+42169874 | Msa0548310:CDS |
| ATCCAACTGGCATATTGGAA+GGG | 0.612491 | 4_1:+42171300 | Msa0548310:CDS |
| GGAAGGGAAAACAACTGACC+AGG | 0.627194 | 4_1:+42171316 | Msa0548310:CDS |
| GTATTTCATCAAGTTCACGA+TGG | 0.702362 | 4_1:+42169918 | Msa0548310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTCTTATTATATTTTCA+TGG | + | chr4_1:42170278-42170297 | Msa0548310:intron | 15.0% |
| !! | ATAACTAATAGTTAAAAACA+AGG | - | chr4_1:42170563-42170582 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAGCATTAAAAA+AGG | + | chr4_1:42170872-42170891 | Msa0548310:intron | 15.0% |
| !!! | GGTAATTGAATTATTATTTT+TGG | + | chr4_1:42171027-42171046 | Msa0548310:intron | 15.0% |
| !! | TTATTAAAAAAGTCAAAGAA+GGG | - | chr4_1:42171446-42171465 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAAGTCAAAGA+AGG | - | chr4_1:42171447-42171466 | None:intergenic | 15.0% |
| !!! | TTGTTCTTATTATATTTTCA+TGG | + | chr4_1:42170278-42170297 | Msa0548310:intron | 15.0% |
| !! | ATAACTAATAGTTAAAAACA+AGG | - | chr4_1:42170563-42170582 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAGCATTAAAAA+AGG | + | chr4_1:42170872-42170891 | Msa0548310:intron | 15.0% |
| !!! | GGTAATTGAATTATTATTTT+TGG | + | chr4_1:42171027-42171046 | Msa0548310:intron | 15.0% |
| !! | TTATTAAAAAAGTCAAAGAA+GGG | - | chr4_1:42171446-42171465 | None:intergenic | 15.0% |
| !! | ATTATTAAAAAAGTCAAAGA+AGG | - | chr4_1:42171447-42171466 | None:intergenic | 15.0% |
| !! | GAATAATAATGAGATTAATG+AGG | + | chr4_1:42169874-42169893 | Msa0548310:CDS | 20.0% |
| !!! | TACTTATTTGTTCTTTTGTT+GGG | - | chr4_1:42169946-42169965 | None:intergenic | 20.0% |
| !!! | ATACTTATTTGTTCTTTTGT+TGG | - | chr4_1:42169947-42169966 | None:intergenic | 20.0% |
| !! | AAAAGAACAAATAAGTATGT+TGG | + | chr4_1:42169949-42169968 | Msa0548310:CDS | 20.0% |
| !! | CAAAAACATTGATATGAAAA+TGG | - | chr4_1:42170261-42170280 | None:intergenic | 20.0% |
| !! | ATCTATATTGTGGTAAAATA+TGG | + | chr4_1:42170507-42170526 | Msa0548310:intron | 20.0% |
| !! | TCTATATTGTGGTAAAATAT+GGG | + | chr4_1:42170508-42170527 | Msa0548310:intron | 20.0% |
| !! | TGAAAATGAGATTTATTGAA+AGG | - | chr4_1:42170660-42170679 | None:intergenic | 20.0% |
| !!! | TTCAATAAATCTCATTTTCA+TGG | + | chr4_1:42170660-42170679 | Msa0548310:intron | 20.0% |
| !! | ACCAAAAATAAAATACTAGA+AGG | - | chr4_1:42170752-42170771 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATTATATACCAT+TGG | - | chr4_1:42171212-42171231 | None:intergenic | 20.0% |
| !! | GAATAATAATGAGATTAATG+AGG | + | chr4_1:42169874-42169893 | Msa0548310:CDS | 20.0% |
| !!! | TACTTATTTGTTCTTTTGTT+GGG | - | chr4_1:42169946-42169965 | None:intergenic | 20.0% |
| !!! | ATACTTATTTGTTCTTTTGT+TGG | - | chr4_1:42169947-42169966 | None:intergenic | 20.0% |
| !! | AAAAGAACAAATAAGTATGT+TGG | + | chr4_1:42169949-42169968 | Msa0548310:CDS | 20.0% |
| !! | CAAAAACATTGATATGAAAA+TGG | - | chr4_1:42170261-42170280 | None:intergenic | 20.0% |
| !! | ATCTATATTGTGGTAAAATA+TGG | + | chr4_1:42170507-42170526 | Msa0548310:intron | 20.0% |
| !! | TCTATATTGTGGTAAAATAT+GGG | + | chr4_1:42170508-42170527 | Msa0548310:intron | 20.0% |
| !! | TGAAAATGAGATTTATTGAA+AGG | - | chr4_1:42170660-42170679 | None:intergenic | 20.0% |
| !!! | TTCAATAAATCTCATTTTCA+TGG | + | chr4_1:42170660-42170679 | Msa0548310:intron | 20.0% |
| !! | ACCAAAAATAAAATACTAGA+AGG | - | chr4_1:42170752-42170771 | None:intergenic | 20.0% |
| !!! | ATGTTTTCATTATATACCAT+TGG | - | chr4_1:42171212-42171231 | None:intergenic | 20.0% |
| ! | TAATAATGAGATTAATGAGG+AGG | + | chr4_1:42169877-42169896 | Msa0548310:CDS | 25.0% |
| ! | AATAATGAGATTAATGAGGA+GGG | + | chr4_1:42169878-42169897 | Msa0548310:CDS | 25.0% |
| ! | TATAACCTAGAACTAGAAAA+AGG | - | chr4_1:42170218-42170237 | None:intergenic | 25.0% |
| ! | TATCTTTGTACGACATAAAA+TGG | + | chr4_1:42170403-42170422 | Msa0548310:intron | 25.0% |
| !!! | TTGTTGTTGTATCTTTTTCA+TGG | + | chr4_1:42170473-42170492 | Msa0548310:intron | 25.0% |
| ! | TAAAACGGGATTTATATAGA+GGG | - | chr4_1:42170626-42170645 | None:intergenic | 25.0% |
| ! | AAGGTTAATTTCTCCTAAAA+CGG | - | chr4_1:42170641-42170660 | None:intergenic | 25.0% |
| !!! | GCCTTCTAGTATTTTATTTT+TGG | + | chr4_1:42170748-42170767 | Msa0548310:intron | 25.0% |
| ! | CAAATAAATTACTCCATCTT+TGG | - | chr4_1:42170921-42170940 | None:intergenic | 25.0% |
| ! | TGTAACCAAAGTTATAGTTA+GGG | - | chr4_1:42171247-42171266 | None:intergenic | 25.0% |
| ! | TTACAGTAATCAAGAAACAT+TGG | + | chr4_1:42171262-42171281 | Msa0548310:CDS | 25.0% |
| ! | AATCAAGATCATGGTTATAA+TGG | + | chr4_1:42171413-42171432 | Msa0548310:CDS | 25.0% |
| ! | ATCAAGATCATGGTTATAAT+GGG | + | chr4_1:42171414-42171433 | Msa0548310:CDS | 25.0% |
| !!! | GACTTTTTTAATAATTCTGC+AGG | + | chr4_1:42171452-42171471 | Msa0548310:CDS | 25.0% |
| ! | TAATAATGAGATTAATGAGG+AGG | + | chr4_1:42169877-42169896 | Msa0548310:CDS | 25.0% |
| ! | AATAATGAGATTAATGAGGA+GGG | + | chr4_1:42169878-42169897 | Msa0548310:CDS | 25.0% |
| ! | TATAACCTAGAACTAGAAAA+AGG | - | chr4_1:42170218-42170237 | None:intergenic | 25.0% |
| ! | TATCTTTGTACGACATAAAA+TGG | + | chr4_1:42170403-42170422 | Msa0548310:intron | 25.0% |
| !!! | TTGTTGTTGTATCTTTTTCA+TGG | + | chr4_1:42170473-42170492 | Msa0548310:intron | 25.0% |
| ! | TAAAACGGGATTTATATAGA+GGG | - | chr4_1:42170626-42170645 | None:intergenic | 25.0% |
| ! | AAGGTTAATTTCTCCTAAAA+CGG | - | chr4_1:42170641-42170660 | None:intergenic | 25.0% |
| !!! | GCCTTCTAGTATTTTATTTT+TGG | + | chr4_1:42170748-42170767 | Msa0548310:intron | 25.0% |
| ! | CAAATAAATTACTCCATCTT+TGG | - | chr4_1:42170921-42170940 | None:intergenic | 25.0% |
| ! | TGTAACCAAAGTTATAGTTA+GGG | - | chr4_1:42171247-42171266 | None:intergenic | 25.0% |
| ! | TTACAGTAATCAAGAAACAT+TGG | + | chr4_1:42171262-42171281 | Msa0548310:CDS | 25.0% |
| ! | AATCAAGATCATGGTTATAA+TGG | + | chr4_1:42171413-42171432 | Msa0548310:CDS | 25.0% |
| ! | ATCAAGATCATGGTTATAAT+GGG | + | chr4_1:42171414-42171433 | Msa0548310:CDS | 25.0% |
| !!! | GACTTTTTTAATAATTCTGC+AGG | + | chr4_1:42171452-42171471 | Msa0548310:CDS | 25.0% |
| TTGGAGAATTTGTATAAGCA+AGG | + | chr4_1:42169968-42169987 | Msa0548310:CDS | 30.0% | |
| AAATACAAGAAATCACTGCT+AGG | + | chr4_1:42170014-42170033 | Msa0548310:CDS | 30.0% | |
| ! | AAGGAAAGAATGTCTTTTAC+TGG | + | chr4_1:42170059-42170078 | Msa0548310:CDS | 30.0% |
| CAAATAGGTGAAGGATAAAT+GGG | - | chr4_1:42170169-42170188 | None:intergenic | 30.0% | |
| ACAAATAGGTGAAGGATAAA+TGG | - | chr4_1:42170170-42170189 | None:intergenic | 30.0% | |
| AACATACCATTTGGACAAAT+AGG | - | chr4_1:42170184-42170203 | None:intergenic | 30.0% | |
| !!! | TTCTTCCTTTTTCTAGTTCT+AGG | + | chr4_1:42170210-42170229 | Msa0548310:intron | 30.0% |
| ! | AACCTAATGAGTACTACTTT+TGG | - | chr4_1:42170319-42170338 | None:intergenic | 30.0% |
| CCATATTTAAATTGTGCTAG+CGG | + | chr4_1:42170344-42170363 | Msa0548310:intron | 30.0% | |
| TTCTGCAAACATCTATATTG+TGG | + | chr4_1:42170497-42170516 | Msa0548310:intron | 30.0% | |
| ! | AAAACAAGGTGCATTTTCAA+CGG | - | chr4_1:42170549-42170568 | None:intergenic | 30.0% |
| CTAAAACGGGATTTATATAG+AGG | - | chr4_1:42170627-42170646 | None:intergenic | 30.0% | |
| ! | CTCTATATAAATCCCGTTTT+AGG | + | chr4_1:42170625-42170644 | Msa0548310:intron | 30.0% |
| AGGTTAATTTCTCCTAAAAC+GGG | - | chr4_1:42170640-42170659 | None:intergenic | 30.0% | |
| TTTCTTCATGCAAATGTGTT+TGG | + | chr4_1:42170810-42170829 | Msa0548310:intron | 30.0% | |
| AACAGAAACATAACCAAAGA+TGG | + | chr4_1:42170905-42170924 | Msa0548310:intron | 30.0% | |
| TAGCTTATTTCATGACTTTG+TGG | - | chr4_1:42171089-42171108 | None:intergenic | 30.0% | |
| AAATATCTGCAATAGTCCAA+TGG | + | chr4_1:42171193-42171212 | Msa0548310:CDS | 30.0% | |
| AGAATCCCTAACTATAACTT+TGG | + | chr4_1:42171239-42171258 | Msa0548310:CDS | 30.0% | |
| CTGTAACCAAAGTTATAGTT+AGG | - | chr4_1:42171248-42171267 | None:intergenic | 30.0% | |
| CATGATATCAATCAAGATCA+TGG | + | chr4_1:42171404-42171423 | Msa0548310:CDS | 30.0% | |
| TTTAATAATTCTGCAGGACA+AGG | + | chr4_1:42171458-42171477 | Msa0548310:CDS | 30.0% | |
| TTGGAGAATTTGTATAAGCA+AGG | + | chr4_1:42169968-42169987 | Msa0548310:CDS | 30.0% | |
| AAATACAAGAAATCACTGCT+AGG | + | chr4_1:42170014-42170033 | Msa0548310:CDS | 30.0% | |
| ! | AAGGAAAGAATGTCTTTTAC+TGG | + | chr4_1:42170059-42170078 | Msa0548310:CDS | 30.0% |
| CAAATAGGTGAAGGATAAAT+GGG | - | chr4_1:42170169-42170188 | None:intergenic | 30.0% | |
| ACAAATAGGTGAAGGATAAA+TGG | - | chr4_1:42170170-42170189 | None:intergenic | 30.0% | |
| AACATACCATTTGGACAAAT+AGG | - | chr4_1:42170184-42170203 | None:intergenic | 30.0% | |
| !!! | TTCTTCCTTTTTCTAGTTCT+AGG | + | chr4_1:42170210-42170229 | Msa0548310:intron | 30.0% |
| ! | AACCTAATGAGTACTACTTT+TGG | - | chr4_1:42170319-42170338 | None:intergenic | 30.0% |
| CCATATTTAAATTGTGCTAG+CGG | + | chr4_1:42170344-42170363 | Msa0548310:intron | 30.0% | |
| TTCTGCAAACATCTATATTG+TGG | + | chr4_1:42170497-42170516 | Msa0548310:intron | 30.0% | |
| ! | AAAACAAGGTGCATTTTCAA+CGG | - | chr4_1:42170549-42170568 | None:intergenic | 30.0% |
| CTAAAACGGGATTTATATAG+AGG | - | chr4_1:42170627-42170646 | None:intergenic | 30.0% | |
| ! | CTCTATATAAATCCCGTTTT+AGG | + | chr4_1:42170625-42170644 | Msa0548310:intron | 30.0% |
| AGGTTAATTTCTCCTAAAAC+GGG | - | chr4_1:42170640-42170659 | None:intergenic | 30.0% | |
| TTTCTTCATGCAAATGTGTT+TGG | + | chr4_1:42170810-42170829 | Msa0548310:intron | 30.0% | |
| AACAGAAACATAACCAAAGA+TGG | + | chr4_1:42170905-42170924 | Msa0548310:intron | 30.0% | |
| TAGCTTATTTCATGACTTTG+TGG | - | chr4_1:42171089-42171108 | None:intergenic | 30.0% | |
| AAATATCTGCAATAGTCCAA+TGG | + | chr4_1:42171193-42171212 | Msa0548310:CDS | 30.0% | |
| AGAATCCCTAACTATAACTT+TGG | + | chr4_1:42171239-42171258 | Msa0548310:CDS | 30.0% | |
| CTGTAACCAAAGTTATAGTT+AGG | - | chr4_1:42171248-42171267 | None:intergenic | 30.0% | |
| CATGATATCAATCAAGATCA+TGG | + | chr4_1:42171404-42171423 | Msa0548310:CDS | 30.0% | |
| TTTAATAATTCTGCAGGACA+AGG | + | chr4_1:42171458-42171477 | Msa0548310:CDS | 30.0% | |
| ATTAATGAGGAGGGTTCAAA+TGG | + | chr4_1:42169887-42169906 | Msa0548310:CDS | 35.0% | |
| TTAATGAGGAGGGTTCAAAT+GGG | + | chr4_1:42169888-42169907 | Msa0548310:CDS | 35.0% | |
| GTATTTCATCAAGTTCACGA+TGG | + | chr4_1:42169918-42169937 | Msa0548310:CDS | 35.0% | |
| TCTTGTATTTCTTCAGCACT+TGG | - | chr4_1:42170004-42170023 | None:intergenic | 35.0% | |
| GAAGTTGAGAACATACCATT+TGG | - | chr4_1:42170193-42170212 | None:intergenic | 35.0% | |
| TGCCAAAAGTAGTACTCATT+AGG | + | chr4_1:42170314-42170333 | Msa0548310:intron | 35.0% | |
| CCGCTAGCACAATTTAAATA+TGG | - | chr4_1:42170347-42170366 | None:intergenic | 35.0% | |
| CTAGTATTCTACTGTAACGT+TGG | + | chr4_1:42171006-42171025 | Msa0548310:intron | 35.0% | |
| ATTTCATGACTTTGTGGTTG+TGG | - | chr4_1:42171083-42171102 | None:intergenic | 35.0% | |
| !! | GAAGCACTTTTGGATTTTGA+GGG | - | chr4_1:42171115-42171134 | None:intergenic | 35.0% |
| !!! | AGAAGCACTTTTGGATTTTG+AGG | - | chr4_1:42171116-42171135 | None:intergenic | 35.0% |
| GCTGAGAAAGTTATGTCAAA+TGG | + | chr4_1:42171164-42171183 | Msa0548310:CDS | 35.0% | |
| ATTAATGAGGAGGGTTCAAA+TGG | + | chr4_1:42169887-42169906 | Msa0548310:CDS | 35.0% | |
| TTAATGAGGAGGGTTCAAAT+GGG | + | chr4_1:42169888-42169907 | Msa0548310:CDS | 35.0% | |
| GTATTTCATCAAGTTCACGA+TGG | + | chr4_1:42169918-42169937 | Msa0548310:CDS | 35.0% | |
| TCTTGTATTTCTTCAGCACT+TGG | - | chr4_1:42170004-42170023 | None:intergenic | 35.0% | |
| GAAGTTGAGAACATACCATT+TGG | - | chr4_1:42170193-42170212 | None:intergenic | 35.0% | |
| TGCCAAAAGTAGTACTCATT+AGG | + | chr4_1:42170314-42170333 | Msa0548310:intron | 35.0% | |
| CCGCTAGCACAATTTAAATA+TGG | - | chr4_1:42170347-42170366 | None:intergenic | 35.0% | |
| CTAGTATTCTACTGTAACGT+TGG | + | chr4_1:42171006-42171025 | Msa0548310:intron | 35.0% | |
| ATTTCATGACTTTGTGGTTG+TGG | - | chr4_1:42171083-42171102 | None:intergenic | 35.0% | |
| !! | GAAGCACTTTTGGATTTTGA+GGG | - | chr4_1:42171115-42171134 | None:intergenic | 35.0% |
| !!! | AGAAGCACTTTTGGATTTTG+AGG | - | chr4_1:42171116-42171135 | None:intergenic | 35.0% |
| GCTGAGAAAGTTATGTCAAA+TGG | + | chr4_1:42171164-42171183 | Msa0548310:CDS | 35.0% | |
| CCATTTGGACAAATAGGTGA+AGG | - | chr4_1:42170178-42170197 | None:intergenic | 40.0% | |
| CCTTCACCTATTTGTCCAAA+TGG | + | chr4_1:42170175-42170194 | Msa0548310:CDS | 40.0% | |
| !!! | TACCTGCAGTAGGTTTTAGA+AGG | + | chr4_1:42171135-42171154 | Msa0548310:CDS | 40.0% |
| !! | TTCCTTCTAAAACCTACTGC+AGG | - | chr4_1:42171140-42171159 | None:intergenic | 40.0% |
| ATCCAACTGGCATATTGGAA+GGG | + | chr4_1:42171300-42171319 | Msa0548310:CDS | 40.0% | |
| CTGAAACAATAGAAGACACC+TGG | - | chr4_1:42171337-42171356 | None:intergenic | 40.0% | |
| AGTTCCACTGATACACATTC+TGG | + | chr4_1:42171368-42171387 | Msa0548310:CDS | 40.0% | |
| AGAACCAGAATGTGTATCAG+TGG | - | chr4_1:42171375-42171394 | None:intergenic | 40.0% | |
| CCATTTGGACAAATAGGTGA+AGG | - | chr4_1:42170178-42170197 | None:intergenic | 40.0% | |
| CCTTCACCTATTTGTCCAAA+TGG | + | chr4_1:42170175-42170194 | Msa0548310:CDS | 40.0% | |
| !!! | TACCTGCAGTAGGTTTTAGA+AGG | + | chr4_1:42171135-42171154 | Msa0548310:CDS | 40.0% |
| !! | TTCCTTCTAAAACCTACTGC+AGG | - | chr4_1:42171140-42171159 | None:intergenic | 40.0% |
| ATCCAACTGGCATATTGGAA+GGG | + | chr4_1:42171300-42171319 | Msa0548310:CDS | 40.0% | |
| CTGAAACAATAGAAGACACC+TGG | - | chr4_1:42171337-42171356 | None:intergenic | 40.0% | |
| AGTTCCACTGATACACATTC+TGG | + | chr4_1:42171368-42171387 | Msa0548310:CDS | 40.0% | |
| AGAACCAGAATGTGTATCAG+TGG | - | chr4_1:42171375-42171394 | None:intergenic | 40.0% | |
| ACTGCTAGGCTTAGAGTGTA+TGG | + | chr4_1:42170028-42170047 | Msa0548310:CDS | 45.0% | |
| AGAGTGTATGGTCACATCGA+AGG | + | chr4_1:42170040-42170059 | Msa0548310:CDS | 45.0% | |
| !! | GGTGAAGGATAAATGGGTTG+AGG | - | chr4_1:42170163-42170182 | None:intergenic | 45.0% |
| !! | AAATTGTGCTAGCGGACTTG+TGG | + | chr4_1:42170352-42170371 | Msa0548310:intron | 45.0% |
| TGTGGTTGTGGTACGCAATA+TGG | - | chr4_1:42171071-42171090 | None:intergenic | 45.0% | |
| !!! | ACTGCAGGTAGAAGCACTTT+TGG | - | chr4_1:42171125-42171144 | None:intergenic | 45.0% |
| ! | AAAGTGCTTCTACCTGCAGT+AGG | + | chr4_1:42171125-42171144 | Msa0548310:CDS | 45.0% |
| TTGTTTCCACTGCATCCAAC+TGG | + | chr4_1:42171287-42171306 | Msa0548310:CDS | 45.0% | |
| AATATGCCAGTTGGATGCAG+TGG | - | chr4_1:42171296-42171315 | None:intergenic | 45.0% | |
| ACTGCATCCAACTGGCATAT+TGG | + | chr4_1:42171295-42171314 | Msa0548310:CDS | 45.0% | |
| CATCCAACTGGCATATTGGA+AGG | + | chr4_1:42171299-42171318 | Msa0548310:CDS | 45.0% | |
| TTCCCTTCCAATATGCCAGT+TGG | - | chr4_1:42171305-42171324 | None:intergenic | 45.0% | |
| ACTGCTAGGCTTAGAGTGTA+TGG | + | chr4_1:42170028-42170047 | Msa0548310:CDS | 45.0% | |
| AGAGTGTATGGTCACATCGA+AGG | + | chr4_1:42170040-42170059 | Msa0548310:CDS | 45.0% | |
| !! | GGTGAAGGATAAATGGGTTG+AGG | - | chr4_1:42170163-42170182 | None:intergenic | 45.0% |
| !! | AAATTGTGCTAGCGGACTTG+TGG | + | chr4_1:42170352-42170371 | Msa0548310:intron | 45.0% |
| TGTGGTTGTGGTACGCAATA+TGG | - | chr4_1:42171071-42171090 | None:intergenic | 45.0% | |
| !!! | ACTGCAGGTAGAAGCACTTT+TGG | - | chr4_1:42171125-42171144 | None:intergenic | 45.0% |
| ! | AAAGTGCTTCTACCTGCAGT+AGG | + | chr4_1:42171125-42171144 | Msa0548310:CDS | 45.0% |
| TTGTTTCCACTGCATCCAAC+TGG | + | chr4_1:42171287-42171306 | Msa0548310:CDS | 45.0% | |
| AATATGCCAGTTGGATGCAG+TGG | - | chr4_1:42171296-42171315 | None:intergenic | 45.0% | |
| ACTGCATCCAACTGGCATAT+TGG | + | chr4_1:42171295-42171314 | Msa0548310:CDS | 45.0% | |
| CATCCAACTGGCATATTGGA+AGG | + | chr4_1:42171299-42171318 | Msa0548310:CDS | 45.0% | |
| TTCCCTTCCAATATGCCAGT+TGG | - | chr4_1:42171305-42171324 | None:intergenic | 45.0% | |
| GGAAGGGAAAACAACTGACC+AGG | + | chr4_1:42171316-42171335 | Msa0548310:CDS | 50.0% | |
| GGAAGGGAAAACAACTGACC+AGG | + | chr4_1:42171316-42171335 | Msa0548310:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 42169863 | 42171487 | 42169863 | ID=Msa0548310;Name=Msa0548310 |
| chr4_1 | mRNA | 42169863 | 42171487 | 42169863 | ID=Msa0548310-mRNA-1;Parent=Msa0548310;Name=Msa0548310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|254 |
| chr4_1 | exon | 42169863 | 42170196 | 42169863 | ID=Msa0548310-mRNA-1:exon:10886;Parent=Msa0548310-mRNA-1 |
| chr4_1 | exon | 42171057 | 42171487 | 42171057 | ID=Msa0548310-mRNA-1:exon:10887;Parent=Msa0548310-mRNA-1 |
| chr4_1 | CDS | 42169863 | 42170196 | 42169863 | ID=Msa0548310-mRNA-1:cds;Parent=Msa0548310-mRNA-1 |
| chr4_1 | CDS | 42171057 | 42171487 | 42171057 | ID=Msa0548310-mRNA-1:cds;Parent=Msa0548310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
