AlfalfaGEDB | Msa0548310

M. sativa cultivar zhongmu-4 / Msa0548310

KEGG: -
GO: GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008284 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0009942 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010654 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0045165 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0090451 GO:0090691 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548310	KEH30134.1	95.349	258	7	3	1	254	1	257	2.33e-178	500

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548310	sp\|Q6X7K1\|WOX2_ARATH	40.856	257	115	8	17	250	6	248	2.34e-52	173

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548310	A0A072UK53	95.349	258	7	3	1	254	1	257	1.11e-178	500

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TFs/TRs:

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Gene ID	Type	Classification
Msa0548310	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548310	MtrunA17_Chr4g0031341	95.349	258	7	3	1	254	1	257	0.0	500
Msa0548310	MtrunA17_Chr8g0392991	56.383	94	35	2	12	99	80	173	6.04e-28	109
Msa0548310	MtrunA17_Chr1g0153171	35.754	179	85	4	20	196	85	235	9.56e-27	103
Msa0548310	MtrunA17_Chr4g0043891	67.692	65	21	0	23	87	6	70	4.17e-26	102
Msa0548310	MtrunA17_Chr7g0238431	66.667	66	22	0	23	88	6	71	5.24e-26	100
Msa0548310	MtrunA17_Chr5g0405351	68.182	66	20	1	22	86	27	92	5.03e-25	100
Msa0548310	MtrunA17_Chr5g0436661	51.899	79	37	1	13	90	20	98	2.96e-24	95.9
Msa0548310	MtrunA17_Chr8g0385441	65.455	55	19	0	34	88	91	145	2.74e-20	84.7
Msa0548310	MtrunA17_Chr3g0125111	63.636	55	20	0	34	88	89	143	5.48e-20	84.0
Msa0548310	MtrunA17_Chr2g0283141	48.387	62	32	0	25	86	55	116	3.29e-14	71.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548310	AT5G59340.1	40.856	257	115	8	17	250	6	248	2.38e-53	173
Msa0548310	AT3G18010.1	45.312	128	57	2	20	134	71	198	5.86e-29	112
Msa0548310	AT1G46480.1	36.994	173	98	3	24	196	89	250	1.61e-26	103
Msa0548310	AT1G46480.2	65.672	67	23	0	24	90	89	155	3.58e-26	101
Msa0548310	AT2G28610.1	62.687	67	25	0	22	88	5	71	7.61e-25	99.4
Msa0548310	AT3G11260.1	50.000	80	40	0	13	92	12	91	8.35e-25	97.4
Msa0548310	AT5G05770.1	54.054	74	34	0	21	94	25	98	1.03e-24	95.5
Msa0548310	AT2G17950.1	63.636	66	23	1	22	86	35	100	2.29e-23	96.3
Msa0548310	AT2G01500.1	64.407	59	21	0	21	79	57	115	5.65e-22	92.4
Msa0548310	AT5G45980.1	51.613	62	30	0	25	86	55	116	8.03e-15	73.2

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Find 46 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACAAATAAGTATGT+TGG	0.504717	4_1:+42169949	Msa0548310:CDS
AAAGTGCTTCTACCTGCAGT+AGG	0.586289	4_1:+42171125	Msa0548310:CDS
AAATACAAGAAATCACTGCT+AGG	0.611419	4_1:+42170014	Msa0548310:CDS
AAATATCTGCAATAGTCCAA+TGG	0.604277	4_1:+42171193	Msa0548310:CDS
AACATACCATTTGGACAAAT+AGG	0.347632	4_1:-42170181	None:intergenic
AATAATGAGATTAATGAGGA+GGG	0.573895	4_1:+42169878	Msa0548310:CDS
AATATGCCAGTTGGATGCAG+TGG	0.586423	4_1:-42171293	None:intergenic
AATCAAGATCATGGTTATAA+TGG	0.248654	4_1:+42171413	Msa0548310:CDS
ACAAATAGGTGAAGGATAAA+TGG	0.223363	4_1:-42170167	None:intergenic
ACTGCAGGTAGAAGCACTTT+TGG	0.360138	4_1:-42171122	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGAGAATTTGTATAAGCA+AGG	+	chr4_1:42169968-42169987	Msa0548310:CDS	30.0%
AAATACAAGAAATCACTGCT+AGG	+	chr4_1:42170014-42170033	Msa0548310:CDS	30.0%
CAAATAGGTGAAGGATAAAT+GGG	-	chr4_1:42170169-42170188	None:intergenic	30.0%
ACAAATAGGTGAAGGATAAA+TGG	-	chr4_1:42170170-42170189	None:intergenic	30.0%
AACATACCATTTGGACAAAT+AGG	-	chr4_1:42170184-42170203	None:intergenic	30.0%
CCATATTTAAATTGTGCTAG+CGG	+	chr4_1:42170344-42170363	Msa0548310:intron	30.0%
TTCTGCAAACATCTATATTG+TGG	+	chr4_1:42170497-42170516	Msa0548310:intron	30.0%
CTAAAACGGGATTTATATAG+AGG	-	chr4_1:42170627-42170646	None:intergenic	30.0%
AGGTTAATTTCTCCTAAAAC+GGG	-	chr4_1:42170640-42170659	None:intergenic	30.0%
TTTCTTCATGCAAATGTGTT+TGG	+	chr4_1:42170810-42170829	Msa0548310:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	42169863	42171487	42169863	ID=Msa0548310;Name=Msa0548310
chr4_1	mRNA	42169863	42171487	42169863	ID=Msa0548310-mRNA-1;Parent=Msa0548310;Name=Msa0548310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|254
chr4_1	exon	42169863	42170196	42169863	ID=Msa0548310-mRNA-1:exon:10886;Parent=Msa0548310-mRNA-1
chr4_1	exon	42171057	42171487	42171057	ID=Msa0548310-mRNA-1:exon:10887;Parent=Msa0548310-mRNA-1
chr4_1	CDS	42169863	42170196	42169863	ID=Msa0548310-mRNA-1:cds;Parent=Msa0548310-mRNA-1
chr4_1	CDS	42171057	42171487	42171057	ID=Msa0548310-mRNA-1:cds;Parent=Msa0548310-mRNA-1

Gene Sequence

>Msa0548310

ATGGAGGGTGAGAATAATAATGAGATTAATGAGGAGGGTTCAAATGGGAATAATAGTATTTCATCAAGTTCACGATGGAACCCAACAAAAGAACAAATAAGTATGTTGGAGAATTTGTATAAGCAAGGAATAAAGACACCAAGTGCTGAAGAAATACAAGAAATCACTGCTAGGCTTAGAGTGTATGGTCACATCGAAGGAAAGAATGTCTTTTACTGGTTTCAGAATCACAAAGCTAGACAGAGACAGAAACAGAAGCAAGAAAGTATTGCTTATTTCAATCGACTTCTTCATAGACCTCAACCCATTTATCCTTCACCTATTTGTCCAAATGCTATCTGTGCACCATATTGCGTACCACAACCACAAAGTCATGAAATAAGCTATTACCCTCAAAATCCAAAAGTGCTTCTACCTGCAGTAGGTTTTAGAAGGAATCACGCTGAGAAAGTTATGTCAAATGGCATGTCAAATATCTGCAATAGTCCAATGGTATATAATGAAAACATGCAACAGAGAATCCCTAACTATAACTTTGGTTACAGTAATCAAGAAACATTGGATTTGTTTCCACTGCATCCAACTGGCATATTGGAAGGGAAAACAACTGACCAGGTGTCTTCTATTGTTTCAGTTTCTGCTGATAGTTCCACTGATACACATTCTGGTTCTTCTCATCATCATGATATCAATCAAGATCATGGTTATAATGGGAACAAACCCTTCTTTGACTTTTTTAATAATTCTGCAGGACAAGGTTCTTAG

Protein sequence

>Msa0548310

MEGENNNEINEEGSNGNNSISSSSRWNPTKEQISMLENLYKQGIKTPSAEEIQEITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQESIAYFNRLLHRPQPIYPSPICPNAICAPYCVPQPQSHEISYYPQNPKVLLPAVGFRRNHAEKVMSNGMSNICNSPMVYNENMQQRIPNYNFGYSNQETLDLFPLHPTGILEGKTTDQVSSIVSVSADSSTDTHSGSSHHHDINQDHGYNGNKPFFDFFNNSAGQGS*