Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548990 | XP_013456221.1 | 80.876 | 434 | 20 | 6 | 1 | 384 | 1 | 421 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548990 | sp|Q9C690|BH122_ARATH | 40.288 | 417 | 161 | 19 | 1 | 380 | 1 | 366 | 2.60e-65 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548990 | A0A072UKL1 | 80.876 | 434 | 20 | 6 | 1 | 384 | 1 | 421 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0548990 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548990 | MtrunA17_Chr4g0032951 | 80.876 | 434 | 20 | 6 | 1 | 384 | 1 | 421 | 0.0 | 627 |
| Msa0548990 | MtrunA17_Chr2g0329041 | 47.856 | 443 | 119 | 13 | 1 | 380 | 1 | 394 | 1.46e-115 | 342 |
| Msa0548990 | MtrunA17_Chr1g0174271 | 45.868 | 242 | 79 | 6 | 181 | 379 | 127 | 359 | 1.58e-54 | 184 |
| Msa0548990 | MtrunA17_Chr3g0087771 | 34.541 | 414 | 179 | 12 | 15 | 383 | 21 | 387 | 1.32e-47 | 167 |
| Msa0548990 | MtrunA17_Chr7g0258181 | 40.870 | 230 | 104 | 5 | 174 | 380 | 85 | 305 | 4.73e-41 | 147 |
| Msa0548990 | MtrunA17_Chr8g0351881 | 37.398 | 246 | 91 | 7 | 181 | 382 | 154 | 380 | 3.96e-34 | 130 |
| Msa0548990 | MtrunA17_Chr4g0014771 | 76.316 | 76 | 16 | 1 | 304 | 379 | 106 | 179 | 1.79e-33 | 123 |
| Msa0548990 | MtrunA17_Chr1g0213791 | 66.304 | 92 | 30 | 1 | 288 | 379 | 236 | 326 | 4.22e-33 | 126 |
| Msa0548990 | MtrunA17_Chr3g0131771 | 61.290 | 62 | 24 | 0 | 318 | 379 | 147 | 208 | 3.20e-16 | 79.0 |
| Msa0548990 | MtrunA17_Chr4g0074161 | 56.061 | 66 | 28 | 1 | 317 | 382 | 205 | 269 | 4.28e-16 | 79.3 |
| Msa0548990 | MtrunA17_Chr1g0152131 | 55.385 | 65 | 29 | 0 | 318 | 382 | 260 | 324 | 2.27e-15 | 77.4 |
| Msa0548990 | MtrunA17_Chr8g0339091 | 55.385 | 65 | 29 | 0 | 318 | 382 | 291 | 355 | 6.40e-15 | 76.3 |
| Msa0548990 | MtrunA17_Chr3g0144641 | 58.065 | 62 | 26 | 0 | 318 | 379 | 191 | 252 | 6.48e-15 | 75.9 |
| Msa0548990 | MtrunA17_Chr7g0234761 | 58.065 | 62 | 26 | 0 | 318 | 379 | 317 | 378 | 7.55e-15 | 75.9 |
| Msa0548990 | MtrunA17_Chr8g0365941 | 58.065 | 62 | 26 | 0 | 318 | 379 | 305 | 366 | 1.13e-14 | 75.1 |
| Msa0548990 | MtrunA17_Chr1g0190731 | 53.030 | 66 | 30 | 1 | 317 | 382 | 192 | 256 | 1.45e-14 | 74.3 |
| Msa0548990 | MtrunA17_Chr8g0385911 | 56.452 | 62 | 27 | 0 | 318 | 379 | 145 | 206 | 2.76e-14 | 73.2 |
| Msa0548990 | MtrunA17_Chr4g0035101 | 56.452 | 62 | 27 | 0 | 318 | 379 | 143 | 204 | 3.41e-14 | 73.2 |
| Msa0548990 | MtrunA17_Chr5g0421111 | 53.846 | 65 | 30 | 0 | 318 | 382 | 365 | 429 | 4.01e-14 | 73.9 |
| Msa0548990 | MtrunA17_Chr8g0363921 | 52.308 | 65 | 31 | 0 | 318 | 382 | 151 | 215 | 9.68e-14 | 70.9 |
| Msa0548990 | MtrunA17_Chr5g0415291 | 50.769 | 65 | 32 | 0 | 318 | 382 | 112 | 176 | 3.24e-13 | 68.9 |
| Msa0548990 | MtrunA17_Chr6g0484271 | 48.387 | 62 | 32 | 0 | 318 | 379 | 155 | 216 | 1.31e-11 | 64.7 |
| Msa0548990 | MtrunA17_Chr3g0134741 | 51.562 | 64 | 30 | 1 | 317 | 380 | 228 | 290 | 2.67e-11 | 64.3 |
| Msa0548990 | MtrunA17_Chr1g0174161 | 43.077 | 65 | 37 | 0 | 318 | 382 | 160 | 224 | 3.37e-11 | 63.9 |
| Msa0548990 | MtrunA17_Chr1g0152651 | 50.000 | 66 | 32 | 1 | 317 | 382 | 273 | 337 | 3.57e-11 | 63.9 |
| Msa0548990 | MtrunA17_Chr7g0258161 | 44.615 | 65 | 36 | 0 | 318 | 382 | 173 | 237 | 4.84e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548990 | AT1G51140.1 | 40.288 | 417 | 161 | 19 | 1 | 380 | 1 | 366 | 2.64e-66 | 215 |
| Msa0548990 | AT2G42280.1 | 43.590 | 234 | 93 | 8 | 177 | 384 | 125 | 345 | 1.04e-45 | 160 |
| Msa0548990 | AT2G42280.3 | 44.348 | 230 | 89 | 8 | 177 | 380 | 125 | 341 | 5.13e-45 | 159 |
| Msa0548990 | AT2G43140.1 | 66.667 | 93 | 30 | 1 | 288 | 379 | 103 | 195 | 4.45e-35 | 128 |
| Msa0548990 | AT1G35460.1 | 75.342 | 73 | 18 | 0 | 310 | 382 | 173 | 245 | 2.86e-34 | 127 |
| Msa0548990 | AT2G43140.2 | 66.667 | 93 | 30 | 1 | 288 | 379 | 200 | 292 | 3.08e-34 | 129 |
| Msa0548990 | AT1G05805.1 | 65.591 | 93 | 30 | 2 | 288 | 379 | 253 | 344 | 9.65e-34 | 129 |
| Msa0548990 | AT4G09180.1 | 74.648 | 71 | 18 | 0 | 312 | 382 | 178 | 248 | 1.52e-30 | 118 |
| Msa0548990 | AT1G35460.2 | 82.979 | 47 | 8 | 0 | 310 | 356 | 173 | 219 | 1.41e-22 | 95.5 |
| Msa0548990 | AT2G24260.2 | 57.576 | 66 | 27 | 1 | 317 | 382 | 34 | 98 | 1.08e-16 | 79.3 |
| Msa0548990 | AT2G24260.1 | 57.576 | 66 | 27 | 1 | 317 | 382 | 137 | 201 | 2.76e-16 | 79.7 |
| Msa0548990 | AT4G34530.1 | 47.126 | 87 | 44 | 1 | 296 | 382 | 152 | 236 | 4.63e-16 | 79.0 |
| Msa0548990 | AT5G58010.1 | 54.545 | 66 | 29 | 1 | 317 | 382 | 98 | 162 | 4.73e-16 | 78.6 |
| Msa0548990 | AT4G30980.1 | 57.812 | 64 | 26 | 1 | 317 | 380 | 129 | 191 | 6.07e-16 | 78.2 |
| Msa0548990 | AT2G42280.2 | 62.745 | 51 | 16 | 1 | 288 | 335 | 246 | 296 | 6.82e-16 | 78.2 |
| Msa0548990 | AT4G30980.2 | 56.061 | 66 | 28 | 1 | 317 | 382 | 177 | 241 | 8.69e-16 | 78.6 |
| Msa0548990 | AT5G50915.3 | 59.677 | 62 | 25 | 0 | 318 | 379 | 136 | 197 | 9.87e-16 | 77.0 |
| Msa0548990 | AT5G50915.4 | 59.677 | 62 | 25 | 0 | 318 | 379 | 136 | 197 | 9.87e-16 | 77.0 |
| Msa0548990 | AT5G50915.1 | 59.677 | 62 | 25 | 0 | 318 | 379 | 136 | 197 | 1.37e-15 | 77.0 |
| Msa0548990 | AT5G50915.2 | 59.677 | 62 | 25 | 0 | 318 | 379 | 136 | 197 | 1.37e-15 | 77.0 |
| Msa0548990 | AT1G25330.1 | 52.308 | 65 | 31 | 0 | 318 | 382 | 104 | 168 | 1.80e-15 | 75.5 |
| Msa0548990 | AT1G68920.3 | 55.385 | 65 | 29 | 0 | 318 | 382 | 302 | 366 | 4.39e-15 | 77.0 |
| Msa0548990 | AT1G68920.1 | 55.385 | 65 | 29 | 0 | 318 | 382 | 303 | 367 | 4.56e-15 | 77.0 |
| Msa0548990 | AT1G68920.4 | 55.385 | 65 | 29 | 0 | 318 | 382 | 303 | 367 | 4.56e-15 | 77.0 |
| Msa0548990 | AT1G68920.2 | 55.385 | 65 | 29 | 0 | 318 | 382 | 303 | 367 | 4.56e-15 | 77.0 |
| Msa0548990 | AT1G26260.5 | 55.385 | 65 | 29 | 0 | 318 | 382 | 201 | 265 | 7.53e-15 | 75.9 |
| Msa0548990 | AT1G26260.4 | 55.385 | 65 | 29 | 0 | 318 | 382 | 223 | 287 | 9.25e-15 | 75.5 |
| Msa0548990 | AT1G26260.1 | 55.385 | 65 | 29 | 0 | 318 | 382 | 223 | 287 | 9.25e-15 | 75.5 |
| Msa0548990 | AT1G26260.6 | 55.385 | 65 | 29 | 0 | 318 | 382 | 223 | 287 | 9.25e-15 | 75.5 |
| Msa0548990 | AT1G26260.2 | 55.385 | 65 | 29 | 0 | 318 | 382 | 223 | 287 | 9.25e-15 | 75.5 |
| Msa0548990 | AT1G26260.3 | 55.385 | 65 | 29 | 0 | 318 | 382 | 172 | 236 | 9.91e-15 | 75.1 |
| Msa0548990 | AT3G07340.2 | 55.385 | 65 | 29 | 0 | 318 | 382 | 258 | 322 | 1.03e-14 | 75.9 |
| Msa0548990 | AT3G07340.1 | 55.385 | 65 | 29 | 0 | 318 | 382 | 258 | 322 | 1.24e-14 | 75.5 |
| Msa0548990 | AT1G10120.2 | 55.385 | 65 | 29 | 0 | 318 | 382 | 206 | 270 | 1.38e-14 | 74.7 |
| Msa0548990 | AT1G10120.1 | 55.385 | 65 | 29 | 0 | 318 | 382 | 206 | 270 | 1.38e-14 | 74.7 |
| Msa0548990 | AT1G73830.2 | 52.308 | 65 | 31 | 0 | 318 | 382 | 147 | 211 | 1.84e-14 | 73.2 |
| Msa0548990 | AT1G73830.1 | 52.308 | 65 | 31 | 0 | 318 | 382 | 147 | 211 | 1.99e-14 | 73.2 |
| Msa0548990 | AT1G18400.2 | 54.839 | 62 | 28 | 0 | 318 | 379 | 145 | 206 | 2.16e-14 | 72.8 |
| Msa0548990 | AT5G48560.1 | 53.846 | 65 | 30 | 0 | 318 | 382 | 301 | 365 | 2.74e-14 | 74.7 |
| Msa0548990 | AT5G48560.2 | 53.846 | 65 | 30 | 0 | 318 | 382 | 301 | 365 | 2.81e-14 | 74.3 |
| Msa0548990 | AT1G18400.1 | 54.839 | 62 | 28 | 0 | 318 | 379 | 145 | 206 | 3.10e-14 | 72.4 |
| Msa0548990 | AT1G59640.1 | 52.308 | 65 | 31 | 0 | 318 | 382 | 136 | 200 | 1.94e-13 | 70.5 |
| Msa0548990 | AT3G23690.1 | 52.308 | 65 | 31 | 0 | 318 | 382 | 191 | 255 | 2.73e-13 | 70.9 |
| Msa0548990 | AT4G36540.2 | 37.398 | 123 | 66 | 3 | 257 | 379 | 91 | 202 | 5.69e-13 | 69.3 |
| Msa0548990 | AT4G36540.1 | 37.398 | 123 | 66 | 3 | 257 | 379 | 91 | 202 | 6.19e-13 | 69.3 |
| Msa0548990 | AT2G18300.2 | 49.231 | 65 | 33 | 0 | 318 | 382 | 185 | 249 | 7.48e-13 | 69.3 |
| Msa0548990 | AT2G18300.1 | 51.613 | 62 | 30 | 0 | 318 | 379 | 185 | 246 | 7.87e-13 | 69.3 |
| Msa0548990 | AT1G59640.2 | 54.839 | 62 | 28 | 0 | 318 | 379 | 136 | 197 | 8.22e-13 | 69.3 |
| Msa0548990 | AT2G18300.3 | 51.613 | 62 | 30 | 0 | 318 | 379 | 185 | 246 | 1.07e-12 | 69.3 |
| Msa0548990 | AT2G42300.1 | 46.575 | 73 | 38 | 1 | 311 | 382 | 177 | 249 | 1.54e-12 | 68.6 |
| Msa0548990 | AT2G42300.4 | 46.575 | 73 | 38 | 1 | 311 | 382 | 177 | 249 | 1.84e-12 | 67.4 |
| Msa0548990 | AT3G57800.2 | 47.692 | 65 | 34 | 0 | 318 | 382 | 204 | 268 | 1.08e-11 | 66.2 |
| Msa0548990 | AT5G62610.2 | 50.000 | 62 | 31 | 0 | 318 | 379 | 153 | 214 | 1.67e-11 | 64.7 |
| Msa0548990 | AT5G62610.1 | 50.000 | 62 | 31 | 0 | 318 | 379 | 153 | 214 | 1.67e-11 | 64.7 |
| Msa0548990 | AT1G27740.1 | 47.222 | 72 | 37 | 1 | 313 | 384 | 162 | 232 | 2.20e-11 | 64.3 |
Find 87 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTTCTGCGATGCTTCT+TGG | 0.204939 | 4_1:-43695454 | None:intergenic |
| TCACTCTGTTCACCCCTTAT+TGG | 0.206448 | 4_1:+43692686 | Msa0548990:five_prime_UTR |
| GCCAATTCGGCCGTAGTATT+TGG | 0.246472 | 4_1:-43695355 | None:intergenic |
| CATCAGCAACAAATGAATTC+AGG | 0.254682 | 4_1:+43693428 | Msa0548990:CDS |
| TGCCACGTTCCATTCATATT+TGG | 0.254794 | 4_1:+43692594 | Msa0548990:five_prime_UTR |
| AGTAATAATATGAGTAATTA+TGG | 0.267441 | 4_1:+43693815 | Msa0548990:CDS |
| CCCTTTCTGCGATGCTTCTT+GGG | 0.281243 | 4_1:-43695453 | None:intergenic |
| CTGTGGAGGTGCAGCCAATA+AGG | 0.286657 | 4_1:-43692700 | None:intergenic |
| CCAGACTACTTCTGCTCCTT+TGG | 0.303630 | 4_1:+43695315 | Msa0548990:CDS |
| TCAACTACTGAATCAGTTAT+AGG | 0.313043 | 4_1:-43693653 | None:intergenic |
| ATCTTTACCTTATCCATGTT+TGG | 0.314679 | 4_1:-43696026 | None:intergenic |
| CTTCTCAATGGCTGCCAATT+CGG | 0.320940 | 4_1:-43695368 | None:intergenic |
| CGGGTTTCAGCAAAACCTTC+AGG | 0.325691 | 4_1:-43694872 | None:intergenic |
| GCCAAATACTACGGCCGAAT+TGG | 0.337775 | 4_1:+43695354 | Msa0548990:CDS |
| CCTAACGGTGAGGCATAGTT+TGG | 0.353263 | 4_1:-43694806 | None:intergenic |
| CTTTCTGTTTCAGGACTTGA+AGG | 0.354030 | 4_1:-43693533 | None:intergenic |
| TTTGCTGCTATGAGAGGAAT+AGG | 0.354357 | 4_1:+43694710 | Msa0548990:CDS |
| TATGAGAGGAATAGGAACTA+TGG | 0.359228 | 4_1:+43694718 | Msa0548990:CDS |
| GGTGGTAGTGGTGGTGGTGG+TGG | 0.363507 | 4_1:+43693593 | Msa0548990:CDS |
| TCAAACATTAACATTGATAC+TGG | 0.367647 | 4_1:+43693956 | Msa0548990:CDS |
| TCAACCTCTTCCTTAACTAT+AGG | 0.381573 | 4_1:-43693719 | None:intergenic |
| TTTATCCCGGGTTTCCCCTT+AGG | 0.384096 | 4_1:+43694905 | Msa0548990:CDS |
| CTCTCTTGAACTTCCTATAG+AGG | 0.388843 | 4_1:+43692760 | Msa0548990:five_prime_UTR |
| GGAAGTGGTGGTAGTGGTGG+TGG | 0.399180 | 4_1:+43693587 | Msa0548990:CDS |
| CGACCGGTCTTCATTTGATT+CGG | 0.402592 | 4_1:-43693890 | None:intergenic |
| TCACCGTTAGGAGCTGAAAT+CGG | 0.415027 | 4_1:+43694818 | Msa0548990:CDS |
| CCAAAGGAGCAGAAGTAGTC+TGG | 0.416991 | 4_1:-43695315 | None:intergenic |
| CCCAAGAAGCATCGCAGAAA+GGG | 0.421337 | 4_1:+43695453 | Msa0548990:CDS |
| TGTGGAGGTGCAGCCAATAA+GGG | 0.436386 | 4_1:-43692699 | None:intergenic |
| GAAAGTGAAGAAACCTCTAT+AGG | 0.438178 | 4_1:-43692773 | None:intergenic |
| TAGGAAGTTCAAGAGAGAAA+AGG | 0.440102 | 4_1:-43692754 | None:intergenic |
| AGGAAGTTCAAGAGAGAAAA+GGG | 0.441735 | 4_1:-43692753 | None:intergenic |
| GCAACAGCTTCCTATAGTTA+AGG | 0.446191 | 4_1:+43693709 | Msa0548990:CDS |
| AGTGGTGGTAGTGGTGGTGG+TGG | 0.447971 | 4_1:+43693590 | Msa0548990:CDS |
| CACCGTTAGGAGCTGAAATC+GGG | 0.453811 | 4_1:+43694819 | Msa0548990:CDS |
| TGATGATCTAGAAACATAGT+TGG | 0.464492 | 4_1:-43693398 | None:intergenic |
| CCAAACTATGCCTCACCGTT+AGG | 0.468050 | 4_1:+43694806 | Msa0548990:CDS |
| TATAATGATGCTAGCTAGCT+TGG | 0.471601 | 4_1:+43694679 | Msa0548990:intron |
| ATGAATAGTCTTAGTGGAAG+TGG | 0.476450 | 4_1:+43693572 | Msa0548990:CDS |
| AAGGTGGTCTTCCTGAACTT+TGG | 0.484772 | 4_1:-43693865 | None:intergenic |
| ATCAGCAACAAATGAATTCA+GGG | 0.496532 | 4_1:+43693429 | Msa0548990:CDS |
| TTGAGAAAACCAAATATGAA+TGG | 0.501615 | 4_1:-43692603 | None:intergenic |
| CACACAACAAATCTGAAAGC+TGG | 0.505837 | 4_1:+43692658 | Msa0548990:five_prime_UTR |
| CTAAAATTAGCGAGCGAATG+AGG | 0.505851 | 4_1:+43695985 | Msa0548990:CDS |
| AGTGGAAGTGGTGGTAGTGG+TGG | 0.511352 | 4_1:+43693584 | Msa0548990:CDS |
| CTTAGTGGAAGTGGTGGTAG+TGG | 0.518560 | 4_1:+43693581 | Msa0548990:CDS |
| TTCATTTGATTCGGCAAAGG+TGG | 0.519821 | 4_1:-43693881 | None:intergenic |
| TGCGATGCTTCTTGGGTGAG+TGG | 0.520586 | 4_1:-43695446 | None:intergenic |
| GGTTGAATATAAAATAGCAT+TGG | 0.523804 | 4_1:-43692732 | None:intergenic |
| AGGTTTATGAATAGTCTTAG+TGG | 0.525192 | 4_1:+43693566 | Msa0548990:CDS |
| TCTCGTGCCAAACATGGATA+AGG | 0.525796 | 4_1:+43696019 | Msa0548990:CDS |
| CACATCAGACATGTTGGACT+TGG | 0.527533 | 4_1:+43696146 | Msa0548990:CDS |
| AGACATGGCAGTTCACCTGC+TGG | 0.529643 | 4_1:+43693926 | Msa0548990:CDS |
| ACCCAAGAAGCATCGCAGAA+AGG | 0.530358 | 4_1:+43695452 | Msa0548990:CDS |
| GTCTTCATTTGATTCGGCAA+AGG | 0.532649 | 4_1:-43693884 | None:intergenic |
| GCTTCCTATAGTTAAGGAAG+AGG | 0.542479 | 4_1:+43693715 | Msa0548990:CDS |
| CGAGCGAATGAGGAAACTAC+AGG | 0.543755 | 4_1:+43695995 | Msa0548990:CDS |
| AACAAACACATCAGACATGT+TGG | 0.549768 | 4_1:+43696140 | Msa0548990:CDS |
| ATGAGAGGAATAGGAACTAT+GGG | 0.549779 | 4_1:+43694719 | Msa0548990:CDS |
| TGTTTGTACATACCTCAACT+TGG | 0.553379 | 4_1:-43696197 | None:intergenic |
| ATGTTTGAAAACAATCCAGC+AGG | 0.553542 | 4_1:-43693941 | None:intergenic |
| ATGATGCTAGCTAGCTTGGT+TGG | 0.555507 | 4_1:+43694683 | Msa0548990:intron |
| CTCCCGATTTCAGCTCCTAA+CGG | 0.555564 | 4_1:-43694821 | None:intergenic |
| CGGGATAAAATCGTTACCCC+GGG | 0.559844 | 4_1:-43694891 | None:intergenic |
| CAAAACAATCTTGAACCTGA+AGG | 0.566426 | 4_1:+43694857 | Msa0548990:CDS |
| CGGTCTAGTCTTATTAGACA+TGG | 0.571581 | 4_1:+43693911 | Msa0548990:CDS |
| ACAGGATCTCGTGCCAAACA+TGG | 0.576148 | 4_1:+43696013 | Msa0548990:CDS |
| GTAGTACCTAAGGGGAAACC+CGG | 0.587146 | 4_1:-43694911 | None:intergenic |
| AAATGAATTCAGGGTTAACA+CGG | 0.591208 | 4_1:+43693438 | Msa0548990:CDS |
| TGGCACAGCCTCGTTTAGCA+CGG | 0.591219 | 4_1:-43695426 | None:intergenic |
| TGCAAAATCCGTGCTAAACG+AGG | 0.592385 | 4_1:+43695418 | Msa0548990:CDS |
| CCGGGATAAAATCGTTACCC+CGG | 0.596209 | 4_1:-43694892 | None:intergenic |
| AATGAATAACAATGAATCTG+TGG | 0.596436 | 4_1:+43693766 | Msa0548990:CDS |
| GATGAGTATGCCAAATACTA+CGG | 0.608721 | 4_1:+43695345 | Msa0548990:CDS |
| ATACTCATCTGATGAGCCAA+AGG | 0.612846 | 4_1:-43695331 | None:intergenic |
| TCTAATAAGACTAGACCGAC+CGG | 0.616887 | 4_1:-43693906 | None:intergenic |
| TTGCCGAATCAAATGAAGAC+CGG | 0.622612 | 4_1:+43693887 | Msa0548990:CDS |
| AATAGTCTTAGTGGAAGTGG+TGG | 0.627049 | 4_1:+43693575 | Msa0548990:CDS |
| CGAATCAAATGAAGACCGGT+CGG | 0.663039 | 4_1:+43693891 | Msa0548990:CDS |
| CCTCCCATGTAGTACCTAAG+GGG | 0.665348 | 4_1:-43694919 | None:intergenic |
| GTGGAGGTGCAGCCAATAAG+GGG | 0.668003 | 4_1:-43692698 | None:intergenic |
| GCGTGTAGTGAAGAGAGTGG+TGG | 0.682382 | 4_1:-43692805 | None:intergenic |
| TAGTACCTAAGGGGAAACCC+GGG | 0.682720 | 4_1:-43694910 | None:intergenic |
| AGACCTACAAAACCAAGTTG+AGG | 0.687966 | 4_1:+43696185 | Msa0548990:CDS |
| GTAGCGTGTAGTGAAGAGAG+TGG | 0.703050 | 4_1:-43692808 | None:intergenic |
| GATTTCAGCTCCTAACGGTG+AGG | 0.706801 | 4_1:-43694816 | None:intergenic |
| AACCAAATATGAATGGAACG+TGG | 0.761445 | 4_1:-43692596 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATCAAATTTTTATTTTTAC+AGG | + | chr4_1:43693319-43693338 | Msa0548990:intron | 15.0% |
| !! | ATATTTGAAAAATATGAACT+TGG | - | chr4_1:43693476-43693495 | None:intergenic | 15.0% |
| !! | AGTAATAATATGAGTAATTA+TGG | + | chr4_1:43693815-43693834 | Msa0548990:CDS | 15.0% |
| !! | ATAGTTCATATCTTTGTATA+TGG | + | chr4_1:43692931-43692950 | Msa0548990:intron | 20.0% |
| !! | AAAAACTGAAAAAGATGAAA+GGG | - | chr4_1:43693200-43693219 | None:intergenic | 20.0% |
| !!! | AATAAAACATCACTTTGTTT+TGG | + | chr4_1:43694013-43694032 | Msa0548990:intron | 20.0% |
| !!! | ATAAAACATCACTTTGTTTT+GGG | + | chr4_1:43694014-43694033 | Msa0548990:intron | 20.0% |
| !!! | TGTAGTTTTTATCAAAATCA+CGG | + | chr4_1:43694229-43694248 | Msa0548990:intron | 20.0% |
| !!! | ATTTACATTTTGTGCATATT+TGG | - | chr4_1:43694290-43694309 | None:intergenic | 20.0% |
| !! | AAGTTAATTAGAAATCCAAT+AGG | + | chr4_1:43694609-43694628 | Msa0548990:intron | 20.0% |
| !!! | TCATTTTCTTGATCATAAAT+AGG | + | chr4_1:43694652-43694671 | Msa0548990:intron | 20.0% |
| !! | ATGATATCTGATAATATTAC+TGG | + | chr4_1:43694950-43694969 | Msa0548990:intron | 20.0% |
| !! | TAACAATTGGATAAAAATCT+CGG | - | chr4_1:43695772-43695791 | None:intergenic | 20.0% |
| !!! | TTATCCAATTGTTACTTTAT+CGG | + | chr4_1:43695778-43695797 | Msa0548990:intron | 20.0% |
| !! | ATAATTCAAAGTAGTTATGT+AGG | - | chr4_1:43696076-43696095 | None:intergenic | 20.0% |
| !! | TACATAACTACTTTGAATTA+TGG | + | chr4_1:43696075-43696094 | Msa0548990:intron | 20.0% |
| ! | TTGAGAAAACCAAATATGAA+TGG | - | chr4_1:43692606-43692625 | None:intergenic | 25.0% |
| !!! | ATTCATATTTGGTTTTCTCA+AGG | + | chr4_1:43692605-43692624 | Msa0548990:five_prime_UTR | 25.0% |
| !!! | TTCATATTTGGTTTTCTCAA+GGG | + | chr4_1:43692606-43692625 | Msa0548990:five_prime_UTR | 25.0% |
| ! | GGTTGAATATAAAATAGCAT+TGG | - | chr4_1:43692735-43692754 | None:intergenic | 25.0% |
| ! | AAACAACAAAGACAATAGTT+TGG | - | chr4_1:43693043-43693062 | None:intergenic | 25.0% |
| !!! | ACTATTGTCTTTGTTGTTTT+TGG | + | chr4_1:43693044-43693063 | Msa0548990:intron | 25.0% |
| ! | AAAACTGAAAAAGATGAAAG+GGG | - | chr4_1:43693199-43693218 | None:intergenic | 25.0% |
| ! | CAAAAACTGAAAAAGATGAA+AGG | - | chr4_1:43693201-43693220 | None:intergenic | 25.0% |
| !! | GTGAAATAAATTGATTTCCT+TGG | + | chr4_1:43693231-43693250 | Msa0548990:intron | 25.0% |
| !! | AAATAAATTGATTTCCTTGG+TGG | + | chr4_1:43693234-43693253 | Msa0548990:intron | 25.0% |
| !! | AATAAATTGATTTCCTTGGT+GGG | + | chr4_1:43693235-43693254 | Msa0548990:intron | 25.0% |
| ! | AATGAATAACAATGAATCTG+TGG | + | chr4_1:43693766-43693785 | Msa0548990:CDS | 25.0% |
| ! | TCAAACATTAACATTGATAC+TGG | + | chr4_1:43693956-43693975 | Msa0548990:CDS | 25.0% |
| ! | TCATGATAAGAAAAAGAGTA+TGG | - | chr4_1:43693989-43694008 | None:intergenic | 25.0% |
| !!! | ATGGAAATAGGTATTGAAAA+GGG | - | chr4_1:43694052-43694071 | None:intergenic | 25.0% |
| !!! | AATGGAAATAGGTATTGAAA+AGG | - | chr4_1:43694053-43694072 | None:intergenic | 25.0% |
| ! | CCATGTAAAACAAAGAAAAA+GGG | - | chr4_1:43694094-43694113 | None:intergenic | 25.0% |
| ! | ACCATGTAAAACAAAGAAAA+AGG | - | chr4_1:43694095-43694114 | None:intergenic | 25.0% |
| ! | ATAACAAAGTAAAGCTACTT+AGG | - | chr4_1:43694120-43694139 | None:intergenic | 25.0% |
| !!! | GTGACTTTTTTAAATAACTC+CGG | + | chr4_1:43694162-43694181 | Msa0548990:intron | 25.0% |
| !! | CTTACTAAAATTATGATGGA+TGG | - | chr4_1:43694332-43694351 | None:intergenic | 25.0% |
| !!! | CATCCATCATAATTTTAGTA+AGG | + | chr4_1:43694330-43694349 | Msa0548990:intron | 25.0% |
| ! | GTTCCTTACTAAAATTATGA+TGG | - | chr4_1:43694336-43694355 | None:intergenic | 25.0% |
| ! | GCAATAAATAGTAAACCTAT+TGG | - | chr4_1:43694627-43694646 | None:intergenic | 25.0% |
| ! | TGAAATGTACTATCAGAATT+TGG | + | chr4_1:43695048-43695067 | Msa0548990:intron | 25.0% |
| ! | TTATAAATTCTGCTACACTT+CGG | - | chr4_1:43695187-43695206 | None:intergenic | 25.0% |
| !! | TCATAACAAAATGACTTTTC+TGG | - | chr4_1:43695646-43695665 | None:intergenic | 25.0% |
| !! | TTGACTAGTTGACAAATAAT+AGG | + | chr4_1:43695736-43695755 | Msa0548990:intron | 25.0% |
| !! | TTCAACAGTTAATTTGAAGT+CGG | + | chr4_1:43695878-43695897 | Msa0548990:intron | 25.0% |
| ! | CTGAAAATAAATTCACACAA+AGG | - | chr4_1:43695955-43695974 | None:intergenic | 25.0% |
| !!! | CTTTGTGTGAATTTATTTTC+AGG | + | chr4_1:43695953-43695972 | Msa0548990:intron | 25.0% |
| !!! | AAACAATGTTTGGTTTGTTA+AGG | - | chr4_1:43696104-43696123 | None:intergenic | 25.0% |
| ! | AAAAAGTGAGAAACAATGTT+TGG | - | chr4_1:43696114-43696133 | None:intergenic | 25.0% |
| !!! | ACTTTTTTGTTGTTGTGTTG+GGG | - | chr4_1:43692847-43692866 | None:intergenic | 30.0% |
| !!! | CACTTTTTTGTTGTTGTGTT+GGG | - | chr4_1:43692848-43692867 | None:intergenic | 30.0% |
| !!! | ACACTTTTTTGTTGTTGTGT+TGG | - | chr4_1:43692849-43692868 | None:intergenic | 30.0% |
| !!! | TGCACTAGAGGTATTTTTTT+TGG | + | chr4_1:43692869-43692888 | Msa0548990:intron | 30.0% |
| TGTTTAACTATAAGAGACAC+TGG | + | chr4_1:43692958-43692977 | Msa0548990:intron | 30.0% | |
| AAGAAACCAAATTCGATTTC+TGG | - | chr4_1:43693020-43693039 | None:intergenic | 30.0% | |
| TCATTCAGCATCAAAACAAA+CGG | - | chr4_1:43693098-43693117 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGATGCTGAATGA+TGG | + | chr4_1:43693098-43693117 | Msa0548990:intron | 30.0% |
| AAACTGAAAAAGATGAAAGG+GGG | - | chr4_1:43693198-43693217 | None:intergenic | 30.0% | |
| GAAGAAGAAGAAGAAAAGAA+TGG | + | chr4_1:43693355-43693374 | Msa0548990:exon | 30.0% | |
| TGATGATCTAGAAACATAGT+TGG | - | chr4_1:43693401-43693420 | None:intergenic | 30.0% | |
| ATCAGCAACAAATGAATTCA+GGG | + | chr4_1:43693429-43693448 | Msa0548990:CDS | 30.0% | |
| AAATGAATTCAGGGTTAACA+CGG | + | chr4_1:43693438-43693457 | Msa0548990:CDS | 30.0% | |
| ! | AAACAGAAAGAGTTTTTGCA+AGG | + | chr4_1:43693546-43693565 | Msa0548990:CDS | 30.0% |
| ! | AGGTTTATGAATAGTCTTAG+TGG | + | chr4_1:43693566-43693585 | Msa0548990:CDS | 30.0% |
| TCAACTACTGAATCAGTTAT+AGG | - | chr4_1:43693656-43693675 | None:intergenic | 30.0% | |
| GAACTTTGGTAAAAATTCTG+AGG | - | chr4_1:43693854-43693873 | None:intergenic | 30.0% | |
| ! | CAGAATTTTTACCAAAGTTC+AGG | + | chr4_1:43693854-43693873 | Msa0548990:CDS | 30.0% |
| AAAAAAGAGGCAATGGAAAT+AGG | - | chr4_1:43694064-43694083 | None:intergenic | 30.0% | |
| !!! | CCCTTTTTCTTTGTTTTACA+TGG | + | chr4_1:43694091-43694110 | Msa0548990:intron | 30.0% |
| ! | TTTTAAATAACTCCGGAATC+CGG | + | chr4_1:43694169-43694188 | Msa0548990:intron | 30.0% |
| ! | AGTTTTTATCAAAATCACGG+TGG | + | chr4_1:43694232-43694251 | Msa0548990:intron | 30.0% |
| AGAGGACTTGATTTAAATCT+AGG | + | chr4_1:43694510-43694529 | Msa0548990:intron | 30.0% | |
| ! | AGCAAATTTTTCTTCTTCTG+CGG | + | chr4_1:43694766-43694785 | Msa0548990:CDS | 30.0% |
| ! | CATCATCTCTGTATCTTTTT+AGG | - | chr4_1:43694976-43694995 | None:intergenic | 30.0% |
| TTTAAATCCAGCTGAAACTA+AGG | + | chr4_1:43695021-43695040 | Msa0548990:intron | 30.0% | |
| ! | TTGACAACACTGATTACATT+TGG | + | chr4_1:43695234-43695253 | Msa0548990:intron | 30.0% |
| TCAAACACTTATTCATGCTT+TGG | + | chr4_1:43695568-43695587 | Msa0548990:intron | 30.0% | |
| ! | TAATCTCAACTGTGAGTTTT+TGG | - | chr4_1:43695601-43695620 | None:intergenic | 30.0% |
| AATAAATTCACACAAAGGTG+AGG | - | chr4_1:43695950-43695969 | None:intergenic | 30.0% | |
| ATCTTTACCTTATCCATGTT+TGG | - | chr4_1:43696029-43696048 | None:intergenic | 30.0% | |
| !!! | AAGGTAAAGATTTTGACTTG+TGG | + | chr4_1:43696038-43696057 | Msa0548990:intron | 30.0% |
| TTCAAAGTAGTTATGTAGGT+TGG | - | chr4_1:43696072-43696091 | None:intergenic | 30.0% | |
| AACCAAATATGAATGGAACG+TGG | - | chr4_1:43692599-43692618 | None:intergenic | 35.0% | |
| AGGAAGTTCAAGAGAGAAAA+GGG | - | chr4_1:43692756-43692775 | None:intergenic | 35.0% | |
| TAGGAAGTTCAAGAGAGAAA+AGG | - | chr4_1:43692757-43692776 | None:intergenic | 35.0% | |
| GAAAGTGAAGAAACCTCTAT+AGG | - | chr4_1:43692776-43692795 | None:intergenic | 35.0% | |
| !!! | CTTTTTTGTTGTTGTGTTGG+GGG | - | chr4_1:43692846-43692865 | None:intergenic | 35.0% |
| !! | ACAAAAAAGTGTTGCACTAG+AGG | + | chr4_1:43692857-43692876 | Msa0548990:five_prime_UTR | 35.0% |
| GTTACACCAGAAATCGAATT+TGG | + | chr4_1:43693011-43693030 | Msa0548990:intron | 35.0% | |
| !! | ACATGAGCTGTTTTGTGTTA+TGG | - | chr4_1:43693136-43693155 | None:intergenic | 35.0% |
| ATAACAAAGAAAACCCACCA+AGG | - | chr4_1:43693251-43693270 | None:intergenic | 35.0% | |
| !!! | TTGGTGGGTTTTCTTTGTTA+TGG | + | chr4_1:43693250-43693269 | Msa0548990:intron | 35.0% |
| CATCAGCAACAAATGAATTC+AGG | + | chr4_1:43693428-43693447 | Msa0548990:CDS | 35.0% | |
| GCAAAAACTCTTTCTGTTTC+AGG | - | chr4_1:43693545-43693564 | None:intergenic | 35.0% | |
| ! | ATGAATAGTCTTAGTGGAAG+TGG | + | chr4_1:43693572-43693591 | Msa0548990:CDS | 35.0% |
| TCAACCTCTTCCTTAACTAT+AGG | - | chr4_1:43693722-43693741 | None:intergenic | 35.0% | |
| ATGTTTGAAAACAATCCAGC+AGG | - | chr4_1:43693944-43693963 | None:intergenic | 35.0% | |
| AATCACGAAAAAAGAGGCAA+TGG | - | chr4_1:43694071-43694090 | None:intergenic | 35.0% | |
| AAAGGGAATCACGAAAAAAG+AGG | - | chr4_1:43694077-43694096 | None:intergenic | 35.0% | |
| ATCATCGTGTCAATCTAATC+CGG | - | chr4_1:43694191-43694210 | None:intergenic | 35.0% | |
| ! | AGATTTTGCTGAATTCGTTG+TGG | + | chr4_1:43694262-43694281 | Msa0548990:intron | 35.0% |
| ! | CATTTTCCAGCTAATTGGAT+CGG | - | chr4_1:43694416-43694435 | None:intergenic | 35.0% |
| ! | GTTCTCATTTTCCAGCTAAT+TGG | - | chr4_1:43694421-43694440 | None:intergenic | 35.0% |
| GCTGGAAAATGAGAACATAA+TGG | + | chr4_1:43694425-43694444 | Msa0548990:intron | 35.0% | |
| ! | TCATGAAAGTACAACTCAGT+TGG | + | chr4_1:43694464-43694483 | Msa0548990:intron | 35.0% |
| GGCTACTTGACCTAAAAAAA+CGG | + | chr4_1:43694561-43694580 | Msa0548990:intron | 35.0% | |
| GCTACTTGACCTAAAAAAAC+GGG | + | chr4_1:43694562-43694581 | Msa0548990:intron | 35.0% | |
| !!! | TCACGAAATCCCGTTTTTTT+AGG | - | chr4_1:43694574-43694593 | None:intergenic | 35.0% |
| TATAATGATGCTAGCTAGCT+TGG | + | chr4_1:43694679-43694698 | Msa0548990:intron | 35.0% | |
| TATGAGAGGAATAGGAACTA+TGG | + | chr4_1:43694718-43694737 | Msa0548990:CDS | 35.0% | |
| ATGAGAGGAATAGGAACTAT+GGG | + | chr4_1:43694719-43694738 | Msa0548990:CDS | 35.0% | |
| ! | ATTTTTCTTCTTCTGCGGTA+CGG | + | chr4_1:43694771-43694790 | Msa0548990:CDS | 35.0% |
| !! | TCAGGTTCAAGATTGTTTTG+TGG | - | chr4_1:43694857-43694876 | None:intergenic | 35.0% |
| CAAAACAATCTTGAACCTGA+AGG | + | chr4_1:43694857-43694876 | Msa0548990:CDS | 35.0% | |
| ! | TGCATTGATCAGAATGAAAC+AGG | + | chr4_1:43695289-43695308 | Msa0548990:intron | 35.0% |
| ATTGATCAGAATGAAACAGG+AGG | + | chr4_1:43695292-43695311 | Msa0548990:intron | 35.0% | |
| GATGAGTATGCCAAATACTA+CGG | + | chr4_1:43695345-43695364 | Msa0548990:CDS | 35.0% | |
| GAACTGCAAAAACTTCTCAA+TGG | - | chr4_1:43695383-43695402 | None:intergenic | 35.0% | |
| TTGGATAAAAATCTCGGTTG+TGG | - | chr4_1:43695766-43695785 | None:intergenic | 35.0% | |
| GGATCCGATAAAGTAACAAT+TGG | - | chr4_1:43695785-43695804 | None:intergenic | 35.0% | |
| TATTAACGACTTCTGCAACA+AGG | - | chr4_1:43695813-43695832 | None:intergenic | 35.0% | |
| AACAAACACATCAGACATGT+TGG | + | chr4_1:43696140-43696159 | Msa0548990:CDS | 35.0% | |
| !!! | ATACCTCAACTTGGTTTTGT+AGG | - | chr4_1:43696191-43696210 | None:intergenic | 35.0% |
| TGTTTGTACATACCTCAACT+TGG | - | chr4_1:43696200-43696219 | None:intergenic | 35.0% | |
| TGCCACGTTCCATTCATATT+TGG | + | chr4_1:43692594-43692613 | Msa0548990:five_prime_UTR | 40.0% | |
| CACACAACAAATCTGAAAGC+TGG | + | chr4_1:43692658-43692677 | Msa0548990:five_prime_UTR | 40.0% | |
| ! | ATTGGATTTTGTTGCTGTGG+AGG | - | chr4_1:43692717-43692736 | None:intergenic | 40.0% |
| !! | AGCATTGGATTTTGTTGCTG+TGG | - | chr4_1:43692720-43692739 | None:intergenic | 40.0% |
| CTCTCTTGAACTTCCTATAG+AGG | + | chr4_1:43692760-43692779 | Msa0548990:five_prime_UTR | 40.0% | |
| CTATAAGAGACACTGGTAAC+AGG | + | chr4_1:43692965-43692984 | Msa0548990:intron | 40.0% | |
| ! | GATGCTGAATGATGGAAACT+TGG | + | chr4_1:43693106-43693125 | Msa0548990:intron | 40.0% |
| CTTTCTGTTTCAGGACTTGA+AGG | - | chr4_1:43693536-43693555 | None:intergenic | 40.0% | |
| ! | AATAGTCTTAGTGGAAGTGG+TGG | + | chr4_1:43693575-43693594 | Msa0548990:CDS | 40.0% |
| GCAACAGCTTCCTATAGTTA+AGG | + | chr4_1:43693709-43693728 | Msa0548990:CDS | 40.0% | |
| GCTTCCTATAGTTAAGGAAG+AGG | + | chr4_1:43693715-43693734 | Msa0548990:CDS | 40.0% | |
| !! | TTCATTTGATTCGGCAAAGG+TGG | - | chr4_1:43693884-43693903 | None:intergenic | 40.0% |
| !! | GTCTTCATTTGATTCGGCAA+AGG | - | chr4_1:43693887-43693906 | None:intergenic | 40.0% |
| TTGCCGAATCAAATGAAGAC+CGG | + | chr4_1:43693887-43693906 | Msa0548990:CDS | 40.0% | |
| TCTAATAAGACTAGACCGAC+CGG | - | chr4_1:43693909-43693928 | None:intergenic | 40.0% | |
| !! | CGGTCTAGTCTTATTAGACA+TGG | + | chr4_1:43693911-43693930 | Msa0548990:CDS | 40.0% |
| TGTCAATCTAATCCGGATTC+CGG | - | chr4_1:43694184-43694203 | None:intergenic | 40.0% | |
| ! | GAAAGTACAACTCAGTTGGT+AGG | + | chr4_1:43694468-43694487 | Msa0548990:intron | 40.0% |
| !! | TTTTAGGTCAAGTAGCCTAG+TGG | - | chr4_1:43694558-43694577 | None:intergenic | 40.0% |
| TTTGCTGCTATGAGAGGAAT+AGG | + | chr4_1:43694710-43694729 | Msa0548990:CDS | 40.0% | |
| TTTCCCCTTAGGTACTACAT+GGG | + | chr4_1:43694916-43694935 | Msa0548990:intron | 40.0% | |
| GATGTAAAACCATTTCCTCC+AGG | + | chr4_1:43694998-43695017 | Msa0548990:intron | 40.0% | |
| GGATTTAAACCTGGAGGAAA+TGG | - | chr4_1:43695010-43695029 | None:intergenic | 40.0% | |
| GTTTCAGCTGGATTTAAACC+TGG | - | chr4_1:43695019-43695038 | None:intergenic | 40.0% | |
| TCAACTACCTTAGTTTCAGC+TGG | - | chr4_1:43695031-43695050 | None:intergenic | 40.0% | |
| ! | AGTAGAGCATTTGACAACAC+TGG | - | chr4_1:43695083-43695102 | None:intergenic | 40.0% |
| ! | TTTGTGCAGTGTTGTTAGTG+CGG | + | chr4_1:43695151-43695170 | Msa0548990:intron | 40.0% |
| ATACTCATCTGATGAGCCAA+AGG | - | chr4_1:43695334-43695353 | None:intergenic | 40.0% | |
| CGTGCAAGATTGTAAAGATG+TGG | - | chr4_1:43695711-43695730 | None:intergenic | 40.0% | |
| AATTCACACAAAGGTGAGGA+AGG | - | chr4_1:43695946-43695965 | None:intergenic | 40.0% | |
| CTAAAATTAGCGAGCGAATG+AGG | + | chr4_1:43695985-43696004 | Msa0548990:CDS | 40.0% | |
| AGACCTACAAAACCAAGTTG+AGG | + | chr4_1:43696185-43696204 | Msa0548990:CDS | 40.0% | |
| TCACTCTGTTCACCCCTTAT+TGG | + | chr4_1:43692686-43692705 | Msa0548990:five_prime_UTR | 45.0% | |
| AAGGTGGTCTTCCTGAACTT+TGG | - | chr4_1:43693868-43693887 | None:intergenic | 45.0% | |
| CGACCGGTCTTCATTTGATT+CGG | - | chr4_1:43693893-43693912 | None:intergenic | 45.0% | |
| CGAATCAAATGAAGACCGGT+CGG | + | chr4_1:43693891-43693910 | Msa0548990:CDS | 45.0% | |
| AATTGGATCGGCAGTCAGTT+CGG | - | chr4_1:43694404-43694423 | None:intergenic | 45.0% | |
| GCAGGGACATTGATATACAG+AGG | + | chr4_1:43694492-43694511 | Msa0548990:intron | 45.0% | |
| ! | ATGATGCTAGCTAGCTTGGT+TGG | + | chr4_1:43694683-43694702 | Msa0548990:intron | 45.0% |
| TCACCGTTAGGAGCTGAAAT+CGG | + | chr4_1:43694818-43694837 | Msa0548990:CDS | 45.0% | |
| ! | CTGAAGGTTTTGCTGAAACC+CGG | + | chr4_1:43694873-43694892 | Msa0548990:CDS | 45.0% |
| ! | TGAAGGTTTTGCTGAAACCC+GGG | + | chr4_1:43694874-43694893 | Msa0548990:CDS | 45.0% |
| GTTTCCCCTTAGGTACTACA+TGG | + | chr4_1:43694915-43694934 | Msa0548990:intron | 45.0% | |
| TCCTCCCATGTAGTACCTAA+GGG | - | chr4_1:43694923-43694942 | None:intergenic | 45.0% | |
| ATCCTCCCATGTAGTACCTA+AGG | - | chr4_1:43694924-43694943 | None:intergenic | 45.0% | |
| TCAGCTGGATTTAAACCTGG+AGG | - | chr4_1:43695016-43695035 | None:intergenic | 45.0% | |
| CTTCTCAATGGCTGCCAATT+CGG | - | chr4_1:43695371-43695390 | None:intergenic | 45.0% | |
| ! | CGTTTAGCACGGATTTTGCA+CGG | - | chr4_1:43695418-43695437 | None:intergenic | 45.0% |
| TGCAAAATCCGTGCTAAACG+AGG | + | chr4_1:43695418-43695437 | Msa0548990:CDS | 45.0% | |
| GACTTCTGCAACAAGGAATC+TGG | - | chr4_1:43695806-43695825 | None:intergenic | 45.0% | |
| CAAAGGTGAGGAAGGAGATT+TGG | - | chr4_1:43695938-43695957 | None:intergenic | 45.0% | |
| TCTCGTGCCAAACATGGATA+AGG | + | chr4_1:43696019-43696038 | Msa0548990:CDS | 45.0% | |
| CACATCAGACATGTTGGACT+TGG | + | chr4_1:43696146-43696165 | Msa0548990:CDS | 45.0% | |
| !! | AATTTATAATAGAATTAAAA+TGG | - | chr4_1:43695482-43695501 | None:intergenic | 5.0% |
| ! | TGTGGAGGTGCAGCCAATAA+GGG | - | chr4_1:43692702-43692721 | None:intergenic | 50.0% |
| GTAGCGTGTAGTGAAGAGAG+TGG | - | chr4_1:43692811-43692830 | None:intergenic | 50.0% | |
| ! | TTGTTGTTGTGTTGGGGGTG+TGG | - | chr4_1:43692841-43692860 | None:intergenic | 50.0% |
| CTTAGTGGAAGTGGTGGTAG+TGG | + | chr4_1:43693581-43693600 | Msa0548990:CDS | 50.0% | |
| TGACTGCCGATCCAATTAGC+TGG | + | chr4_1:43694407-43694426 | Msa0548990:intron | 50.0% | |
| !! | ACAACTCAGTTGGTAGGTGC+AGG | + | chr4_1:43694474-43694493 | Msa0548990:intron | 50.0% |
| !! | CAACTCAGTTGGTAGGTGCA+GGG | + | chr4_1:43694475-43694494 | Msa0548990:intron | 50.0% |
| ! | GGCAGTTTTGCTGCTATGAG+AGG | + | chr4_1:43694704-43694723 | Msa0548990:CDS | 50.0% |
| CCTAACGGTGAGGCATAGTT+TGG | - | chr4_1:43694809-43694828 | None:intergenic | 50.0% | |
| CCAAACTATGCCTCACCGTT+AGG | + | chr4_1:43694806-43694825 | Msa0548990:CDS | 50.0% | |
| GATTTCAGCTCCTAACGGTG+AGG | - | chr4_1:43694819-43694838 | None:intergenic | 50.0% | |
| CACCGTTAGGAGCTGAAATC+GGG | + | chr4_1:43694819-43694838 | Msa0548990:CDS | 50.0% | |
| CTCCCGATTTCAGCTCCTAA+CGG | - | chr4_1:43694824-43694843 | None:intergenic | 50.0% | |
| CGGGTTTCAGCAAAACCTTC+AGG | - | chr4_1:43694875-43694894 | None:intergenic | 50.0% | |
| ! | GAAGGTTTTGCTGAAACCCG+GGG | + | chr4_1:43694875-43694894 | Msa0548990:CDS | 50.0% |
| CGGGATAAAATCGTTACCCC+GGG | - | chr4_1:43694894-43694913 | None:intergenic | 50.0% | |
| CCGGGATAAAATCGTTACCC+CGG | - | chr4_1:43694895-43694914 | None:intergenic | 50.0% | |
| ! | CCGGGGTAACGATTTTATCC+CGG | + | chr4_1:43694892-43694911 | Msa0548990:CDS | 50.0% |
| ! | CGGGGTAACGATTTTATCCC+GGG | + | chr4_1:43694893-43694912 | Msa0548990:CDS | 50.0% |
| TTTATCCCGGGTTTCCCCTT+AGG | + | chr4_1:43694905-43694924 | Msa0548990:CDS | 50.0% | |
| TAGTACCTAAGGGGAAACCC+GGG | - | chr4_1:43694913-43694932 | None:intergenic | 50.0% | |
| GTAGTACCTAAGGGGAAACC+CGG | - | chr4_1:43694914-43694933 | None:intergenic | 50.0% | |
| CCTCCCATGTAGTACCTAAG+GGG | - | chr4_1:43694922-43694941 | None:intergenic | 50.0% | |
| CCAAAGGAGCAGAAGTAGTC+TGG | - | chr4_1:43695318-43695337 | None:intergenic | 50.0% | |
| CCAGACTACTTCTGCTCCTT+TGG | + | chr4_1:43695315-43695334 | Msa0548990:CDS | 50.0% | |
| GCCAAATACTACGGCCGAAT+TGG | + | chr4_1:43695354-43695373 | Msa0548990:CDS | 50.0% | |
| GCCAATTCGGCCGTAGTATT+TGG | - | chr4_1:43695358-43695377 | None:intergenic | 50.0% | |
| !! | ACCCAAGAAGCATCGCAGAA+AGG | + | chr4_1:43695452-43695471 | Msa0548990:CDS | 50.0% |
| CCCTTTCTGCGATGCTTCTT+GGG | - | chr4_1:43695456-43695475 | None:intergenic | 50.0% | |
| !! | CCCAAGAAGCATCGCAGAAA+GGG | + | chr4_1:43695453-43695472 | Msa0548990:CDS | 50.0% |
| ACCCTTTCTGCGATGCTTCT+TGG | - | chr4_1:43695457-43695476 | None:intergenic | 50.0% | |
| CGAGCGAATGAGGAAACTAC+AGG | + | chr4_1:43695995-43696014 | Msa0548990:CDS | 50.0% | |
| ACAGGATCTCGTGCCAAACA+TGG | + | chr4_1:43696013-43696032 | Msa0548990:CDS | 50.0% | |
| ! | GTGGAGGTGCAGCCAATAAG+GGG | - | chr4_1:43692701-43692720 | None:intergenic | 55.0% |
| ! | CTGTGGAGGTGCAGCCAATA+AGG | - | chr4_1:43692703-43692722 | None:intergenic | 55.0% |
| GCGTGTAGTGAAGAGAGTGG+TGG | - | chr4_1:43692808-43692827 | None:intergenic | 55.0% | |
| !! | AGTGGAAGTGGTGGTAGTGG+TGG | + | chr4_1:43693584-43693603 | Msa0548990:CDS | 55.0% |
| AGACATGGCAGTTCACCTGC+TGG | + | chr4_1:43693926-43693945 | Msa0548990:CDS | 55.0% | |
| AGGTCAAGTAGCCTAGTGGC+AGG | - | chr4_1:43694554-43694573 | None:intergenic | 55.0% | |
| CCCCTTAGGTACTACATGGG+AGG | + | chr4_1:43694919-43694938 | Msa0548990:intron | 55.0% | |
| TGGCACAGCCTCGTTTAGCA+CGG | - | chr4_1:43695429-43695448 | None:intergenic | 55.0% | |
| TGCGATGCTTCTTGGGTGAG+TGG | - | chr4_1:43695449-43695468 | None:intergenic | 55.0% | |
| !! | GGAAGTGGTGGTAGTGGTGG+TGG | + | chr4_1:43693587-43693606 | Msa0548990:CDS | 60.0% |
| !! | AGTGGTGGTAGTGGTGGTGG+TGG | + | chr4_1:43693590-43693609 | Msa0548990:CDS | 60.0% |
| TAGTGGCAGGCGTGGAGAAG+TGG | - | chr4_1:43694541-43694560 | None:intergenic | 60.0% | |
| ACTTCTCCACGCCTGCCACT+AGG | + | chr4_1:43694540-43694559 | Msa0548990:intron | 60.0% | |
| AAGTAGCCTAGTGGCAGGCG+TGG | - | chr4_1:43694549-43694568 | None:intergenic | 60.0% | |
| !! | GGTGGTAGTGGTGGTGGTGG+TGG | + | chr4_1:43693593-43693612 | Msa0548990:CDS | 65.0% |
| !! | GGTAGTGGTGGTGGTGGTGG+TGG | + | chr4_1:43693596-43693615 | Msa0548990:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 43692581 | 43696224 | 43692581 | ID=Msa0548990;Name=Msa0548990 |
| chr4_1 | mRNA | 43692581 | 43696224 | 43692581 | ID=Msa0548990-mRNA-1;Parent=Msa0548990;Name=Msa0548990-mRNA-1;_AED=0.14;_eAED=0.14;_QI=331|0.6|0.5|1|0.8|0.83|6|0|384 |
| chr4_1 | exon | 43692581 | 43692878 | 43692581 | ID=Msa0548990-mRNA-1:exon:11272;Parent=Msa0548990-mRNA-1 |
| chr4_1 | exon | 43693341 | 43693977 | 43693341 | ID=Msa0548990-mRNA-1:exon:11273;Parent=Msa0548990-mRNA-1 |
| chr4_1 | exon | 43694693 | 43694926 | 43694693 | ID=Msa0548990-mRNA-1:exon:11274;Parent=Msa0548990-mRNA-1 |
| chr4_1 | exon | 43695311 | 43695474 | 43695311 | ID=Msa0548990-mRNA-1:exon:11275;Parent=Msa0548990-mRNA-1 |
| chr4_1 | exon | 43695975 | 43696040 | 43695975 | ID=Msa0548990-mRNA-1:exon:11276;Parent=Msa0548990-mRNA-1 |
| chr4_1 | exon | 43696138 | 43696224 | 43696138 | ID=Msa0548990-mRNA-1:exon:11277;Parent=Msa0548990-mRNA-1 |
| chr4_1 | five_prime_UTR | 43692581 | 43692878 | 43692581 | ID=Msa0548990-mRNA-1:five_prime_utr;Parent=Msa0548990-mRNA-1 |
| chr4_1 | five_prime_UTR | 43693341 | 43693373 | 43693341 | ID=Msa0548990-mRNA-1:five_prime_utr;Parent=Msa0548990-mRNA-1 |
| chr4_1 | CDS | 43693374 | 43693977 | 43693374 | ID=Msa0548990-mRNA-1:cds;Parent=Msa0548990-mRNA-1 |
| chr4_1 | CDS | 43694693 | 43694926 | 43694693 | ID=Msa0548990-mRNA-1:cds;Parent=Msa0548990-mRNA-1 |
| chr4_1 | CDS | 43695311 | 43695474 | 43695311 | ID=Msa0548990-mRNA-1:cds;Parent=Msa0548990-mRNA-1 |
| chr4_1 | CDS | 43695975 | 43696040 | 43695975 | ID=Msa0548990-mRNA-1:cds;Parent=Msa0548990-mRNA-1 |
| chr4_1 | CDS | 43696138 | 43696224 | 43696138 | ID=Msa0548990-mRNA-1:cds;Parent=Msa0548990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
