Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550580 | XP_024636124.1 | 93.564 | 202 | 13 | 0 | 1 | 202 | 4 | 205 | 4.87e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550580 | sp|Q9SJT8|SRS3_ARATH | 50.758 | 132 | 49 | 2 | 11 | 137 | 3 | 123 | 1.61e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550580 | A0A396I9B8 | 93.564 | 202 | 13 | 0 | 1 | 202 | 4 | 205 | 2.33e-122 | 353 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0550580 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550580 | MtrunA17_Chr4g0035591 | 93.564 | 202 | 13 | 0 | 1 | 202 | 4 | 205 | 4.48e-126 | 353 |
| Msa0550580 | MtrunA17_Chr8g0372461 | 50.000 | 136 | 59 | 2 | 13 | 139 | 117 | 252 | 6.47e-42 | 144 |
| Msa0550580 | MtrunA17_Chr3g0142171 | 50.345 | 145 | 52 | 4 | 14 | 138 | 83 | 227 | 3.64e-41 | 141 |
| Msa0550580 | MtrunA17_Chr5g0404781 | 45.283 | 159 | 56 | 4 | 15 | 142 | 98 | 256 | 2.72e-38 | 134 |
| Msa0550580 | MtrunA17_Chr1g0155791 | 42.568 | 148 | 60 | 2 | 15 | 137 | 120 | 267 | 2.27e-34 | 124 |
| Msa0550580 | MtrunA17_Chr5g0441921 | 37.580 | 157 | 66 | 2 | 17 | 141 | 124 | 280 | 1.41e-29 | 112 |
| Msa0550580 | MtrunA17_Chr8g0353111 | 36.571 | 175 | 73 | 3 | 6 | 142 | 113 | 287 | 3.10e-27 | 105 |
| Msa0550580 | MtrunA17_Chr0c01g0489181 | 86.275 | 51 | 7 | 0 | 1 | 51 | 51 | 101 | 4.32e-26 | 97.1 |
| Msa0550580 | MtrunA17_Chr3g0082511 | 36.076 | 158 | 69 | 4 | 17 | 142 | 134 | 291 | 4.79e-24 | 97.1 |
| Msa0550580 | MtrunA17_Chr2g0281741 | 86.364 | 44 | 6 | 0 | 8 | 51 | 141 | 184 | 4.16e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550580 | AT2G21400.3 | 50.758 | 132 | 49 | 2 | 11 | 137 | 4 | 124 | 1.36e-40 | 136 |
| Msa0550580 | AT2G21400.1 | 50.758 | 132 | 49 | 2 | 11 | 137 | 3 | 123 | 1.63e-40 | 136 |
| Msa0550580 | AT2G21400.2 | 49.265 | 136 | 60 | 2 | 11 | 137 | 4 | 139 | 2.90e-39 | 133 |
| Msa0550580 | AT2G21400.4 | 49.265 | 136 | 60 | 2 | 11 | 137 | 3 | 138 | 3.14e-39 | 133 |
| Msa0550580 | AT1G75520.1 | 37.118 | 229 | 94 | 7 | 14 | 202 | 122 | 340 | 1.39e-38 | 136 |
| Msa0550580 | AT5G66350.3 | 36.667 | 210 | 101 | 6 | 17 | 200 | 120 | 323 | 8.25e-37 | 130 |
| Msa0550580 | AT5G66350.2 | 41.463 | 164 | 72 | 3 | 17 | 160 | 120 | 279 | 2.16e-36 | 130 |
| Msa0550580 | AT5G66350.1 | 41.463 | 164 | 72 | 3 | 17 | 160 | 120 | 279 | 2.67e-36 | 129 |
| Msa0550580 | AT3G51060.1 | 35.714 | 224 | 107 | 8 | 15 | 202 | 142 | 364 | 4.80e-36 | 130 |
| Msa0550580 | AT2G18120.2 | 43.885 | 139 | 68 | 3 | 15 | 143 | 70 | 208 | 6.98e-35 | 123 |
| Msa0550580 | AT2G18120.1 | 43.262 | 141 | 68 | 3 | 15 | 143 | 70 | 210 | 2.72e-34 | 121 |
| Msa0550580 | AT1G19790.2 | 39.444 | 180 | 75 | 4 | 15 | 160 | 117 | 296 | 2.24e-32 | 119 |
| Msa0550580 | AT1G19790.1 | 39.444 | 180 | 75 | 4 | 15 | 160 | 117 | 296 | 2.24e-32 | 119 |
| Msa0550580 | AT4G36260.1 | 40.994 | 161 | 53 | 4 | 15 | 139 | 92 | 246 | 8.98e-32 | 117 |
| Msa0550580 | AT5G12330.1 | 34.518 | 197 | 84 | 4 | 17 | 176 | 112 | 300 | 8.60e-28 | 107 |
| Msa0550580 | AT5G12330.2 | 34.518 | 197 | 84 | 4 | 17 | 176 | 112 | 300 | 8.60e-28 | 107 |
| Msa0550580 | AT5G12330.4 | 34.518 | 197 | 84 | 4 | 17 | 176 | 199 | 387 | 1.17e-27 | 108 |
| Msa0550580 | AT3G54430.1 | 34.848 | 132 | 77 | 3 | 17 | 139 | 41 | 172 | 2.06e-20 | 84.7 |
| Msa0550580 | AT5G33210.2 | 65.957 | 47 | 16 | 0 | 15 | 61 | 15 | 61 | 5.23e-19 | 79.0 |
| Msa0550580 | AT5G12330.3 | 62.000 | 50 | 19 | 0 | 17 | 66 | 112 | 161 | 2.10e-18 | 80.5 |
| Msa0550580 | AT5G33210.1 | 65.957 | 47 | 16 | 0 | 15 | 61 | 50 | 96 | 3.18e-18 | 78.6 |
Find 47 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCATCCATTGCCATCTTTC+AGG | 0.185899 | 4_1:+46140984 | Msa0550580:CDS |
| AAGATGTATTCAACACAATT+AGG | 0.212765 | 4_1:+46140133 | None:intergenic |
| AGGGAAAGAAGAAGTGTTAA+AGG | 0.254491 | 4_1:+46140153 | Msa0550580:CDS |
| AATTTCTACACTTGTTTGAT+AGG | 0.288184 | 4_1:-46140765 | None:intergenic |
| TATCAAACAAGTGTAGAAAT+TGG | 0.319031 | 4_1:+46140767 | Msa0550580:CDS |
| ACCACCTTCATGAACATAAA+AGG | 0.327971 | 4_1:+46140341 | Msa0550580:CDS |
| GTATTGAAGCTTTGTTGATC+AGG | 0.373732 | 4_1:-46140827 | None:intergenic |
| ATGTGTTCAGGTGCGCTCTA+TGG | 0.373967 | 4_1:+46140721 | Msa0550580:CDS |
| TAGAAATTAAGAAACTAATA+TGG | 0.382503 | 4_1:-46141016 | None:intergenic |
| ATGCACAATCCTTCTTTGCT+TGG | 0.390646 | 4_1:-46140201 | None:intergenic |
| AGTGGTATTCTTTATGATCA+AGG | 0.401384 | 4_1:+46140803 | Msa0550580:CDS |
| CTTGGATTCCTGCCGATAGA+AGG | 0.408141 | 4_1:+46140287 | Msa0550580:CDS |
| AGATGTATTCAACACAATTA+GGG | 0.426718 | 4_1:+46140134 | None:intergenic |
| GGCCACATTGACATGTGTTC+AGG | 0.436853 | 4_1:+46140709 | Msa0550580:CDS |
| GGGAAAGAAGAAGTGTTAAA+GGG | 0.452664 | 4_1:+46140154 | Msa0550580:CDS |
| ATTGGAGGACATGTATTTAG+TGG | 0.464916 | 4_1:+46140785 | Msa0550580:CDS |
| CTGTGGGAACCAAGCAAAGA+AGG | 0.482489 | 4_1:+46140192 | Msa0550580:CDS |
| GATGGCAATGGATGCGGTGG+AGG | 0.491036 | 4_1:-46140977 | None:intergenic |
| AAGAAACTAATATGGCATAC+CGG | 0.491152 | 4_1:-46141008 | None:intergenic |
| GGCATACCGGGCCTGAAAGA+TGG | 0.493287 | 4_1:-46140995 | None:intergenic |
| CATTCTGTGACGCCTTCTAT+CGG | 0.499159 | 4_1:-46140299 | None:intergenic |
| AAGTGCTTCTGATATGTGTT+TGG | 0.503819 | 4_1:-46140267 | None:intergenic |
| TATTGAAGCTTTGTTGATCA+GGG | 0.517194 | 4_1:-46140826 | None:intergenic |
| CTGTGACGCCTTCTATCGGC+AGG | 0.519090 | 4_1:-46140295 | None:intergenic |
| GGACGAAACGGTTAATGAAA+CGG | 0.523314 | 4_1:+46140742 | Msa0550580:CDS |
| TCCAGCTGTTACAAGTTCCA+TGG | 0.525576 | 4_1:+46140688 | Msa0550580:CDS |
| CCATTGCCATCTTTCAGGCC+CGG | 0.534404 | 4_1:+46140989 | Msa0550580:CDS |
| GCAAGTGCAAGTGCAACTAT+AGG | 0.535841 | 4_1:+46140923 | Msa0550580:CDS |
| GCCATGGAACTTGTAACAGC+TGG | 0.538874 | 4_1:-46140689 | None:intergenic |
| CTGAAAGATGGCAATGGATG+CGG | 0.543278 | 4_1:-46140983 | None:intergenic |
| GTCTGAAATGTCAAGACTGT+GGG | 0.561427 | 4_1:+46140176 | Msa0550580:CDS |
| AGAAACTAATATGGCATACC+GGG | 0.563457 | 4_1:-46141007 | None:intergenic |
| CGATAGAAGGCGTCACAGAA+TGG | 0.568956 | 4_1:+46140300 | Msa0550580:CDS |
| GCAATCCACACAGGTGATGA+TGG | 0.569958 | 4_1:+46140899 | Msa0550580:CDS |
| CAAACAAGTGTAGAAATTGG+AGG | 0.570503 | 4_1:+46140770 | Msa0550580:CDS |
| AACACATGTCAATGTGGCCA+TGG | 0.579628 | 4_1:-46140705 | None:intergenic |
| AGAAGGATTGTGCATACTCA+AGG | 0.587247 | 4_1:+46140209 | Msa0550580:CDS |
| GGTGCGCTCTATGGACGAAA+CGG | 0.590105 | 4_1:+46140730 | Msa0550580:CDS |
| CCGGGCCTGAAAGATGGCAA+TGG | 0.618050 | 4_1:-46140989 | None:intergenic |
| AGTAGTAATGCAATCCACAC+AGG | 0.618793 | 4_1:+46140890 | Msa0550580:CDS |
| TGAAGGTGGTGCTGATCAGA+AGG | 0.627301 | 4_1:-46140328 | None:intergenic |
| AAACACATATCAGAAGCACT+TGG | 0.635365 | 4_1:+46140269 | Msa0550580:CDS |
| AAAGATGGCAATGGATGCGG+TGG | 0.637766 | 4_1:-46140980 | None:intergenic |
| GGTCTGAAATGTCAAGACTG+TGG | 0.643818 | 4_1:+46140175 | Msa0550580:CDS |
| CACCTGAACACATGTCAATG+TGG | 0.680012 | 4_1:-46140711 | None:intergenic |
| GGTGGTGCTGATCAGAAGGA+TGG | 0.685704 | 4_1:-46140324 | None:intergenic |
| TTGCACCATCATCACCTGTG+TGG | 0.692440 | 4_1:-46140904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTAAAATCAGATTGA+AGG | - | chr4_1:46140566-46140585 | None:intergenic | 15.0% |
| !!! | TAATTTTAAAATCAGATTGA+AGG | - | chr4_1:46140566-46140585 | None:intergenic | 15.0% |
| !! | CTGAAATATTAGACATATTA+TGG | - | chr4_1:46140649-46140668 | None:intergenic | 20.0% |
| !! | CATAATATGTCTAATATTTC+AGG | + | chr4_1:46140647-46140666 | Msa0550580:intron | 20.0% |
| !! | CTGAAATATTAGACATATTA+TGG | - | chr4_1:46140649-46140668 | None:intergenic | 20.0% |
| !! | CATAATATGTCTAATATTTC+AGG | + | chr4_1:46140647-46140666 | Msa0550580:intron | 20.0% |
| ! | CAGAAGAAAGATACTATTTA+GGG | - | chr4_1:46140450-46140469 | None:intergenic | 25.0% |
| ! | ACAGAAGAAAGATACTATTT+AGG | - | chr4_1:46140451-46140470 | None:intergenic | 25.0% |
| ! | TATTATGGTTGTAATTAGGA+TGG | - | chr4_1:46140634-46140653 | None:intergenic | 25.0% |
| ! | GACATATTATGGTTGTAATT+AGG | - | chr4_1:46140638-46140657 | None:intergenic | 25.0% |
| ! | AATTTCTACACTTGTTTGAT+AGG | - | chr4_1:46140768-46140787 | None:intergenic | 25.0% |
| ! | TATCAAACAAGTGTAGAAAT+TGG | + | chr4_1:46140767-46140786 | Msa0550580:CDS | 25.0% |
| ! | CAGAAGAAAGATACTATTTA+GGG | - | chr4_1:46140450-46140469 | None:intergenic | 25.0% |
| ! | ACAGAAGAAAGATACTATTT+AGG | - | chr4_1:46140451-46140470 | None:intergenic | 25.0% |
| ! | TATTATGGTTGTAATTAGGA+TGG | - | chr4_1:46140634-46140653 | None:intergenic | 25.0% |
| ! | GACATATTATGGTTGTAATT+AGG | - | chr4_1:46140638-46140657 | None:intergenic | 25.0% |
| ! | AATTTCTACACTTGTTTGAT+AGG | - | chr4_1:46140768-46140787 | None:intergenic | 25.0% |
| ! | TATCAAACAAGTGTAGAAAT+TGG | + | chr4_1:46140767-46140786 | Msa0550580:CDS | 25.0% |
| !!! | TAGTCTTTTTTCTCTTCCTA+CGG | + | chr4_1:46140584-46140603 | Msa0550580:intron | 30.0% |
| GTACCTCTTGTACTTATTAT+TGG | - | chr4_1:46140610-46140629 | None:intergenic | 30.0% | |
| AGTGGTATTCTTTATGATCA+AGG | + | chr4_1:46140803-46140822 | Msa0550580:CDS | 30.0% | |
| !! | TATTGAAGCTTTGTTGATCA+GGG | - | chr4_1:46140829-46140848 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTGCTGATCAA+GGG | - | chr4_1:46140861-46140880 | None:intergenic | 30.0% |
| ! | TAAGATTTTGTTGCTGATCA+AGG | - | chr4_1:46140862-46140881 | None:intergenic | 30.0% |
| !!! | TAGTCTTTTTTCTCTTCCTA+CGG | + | chr4_1:46140584-46140603 | Msa0550580:intron | 30.0% |
| GTACCTCTTGTACTTATTAT+TGG | - | chr4_1:46140610-46140629 | None:intergenic | 30.0% | |
| AGTGGTATTCTTTATGATCA+AGG | + | chr4_1:46140803-46140822 | Msa0550580:CDS | 30.0% | |
| !! | TATTGAAGCTTTGTTGATCA+GGG | - | chr4_1:46140829-46140848 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTGCTGATCAA+GGG | - | chr4_1:46140861-46140880 | None:intergenic | 30.0% |
| ! | TAAGATTTTGTTGCTGATCA+AGG | - | chr4_1:46140862-46140881 | None:intergenic | 30.0% |
| !! | AGGGAAAGAAGAAGTGTTAA+AGG | + | chr4_1:46140153-46140172 | Msa0550580:CDS | 35.0% |
| !! | GGGAAAGAAGAAGTGTTAAA+GGG | + | chr4_1:46140154-46140173 | Msa0550580:CDS | 35.0% |
| AGAAGTTGCTGCAAAAACAA+AGG | + | chr4_1:46140235-46140254 | Msa0550580:CDS | 35.0% | |
| AAGTGCTTCTGATATGTGTT+TGG | - | chr4_1:46140270-46140289 | None:intergenic | 35.0% | |
| !! | AAACACATATCAGAAGCACT+TGG | + | chr4_1:46140269-46140288 | Msa0550580:CDS | 35.0% |
| ACCACCTTCATGAACATAAA+AGG | + | chr4_1:46140341-46140360 | Msa0550580:CDS | 35.0% | |
| ! | TGTGCCTTTTATGTTCATGA+AGG | - | chr4_1:46140348-46140367 | None:intergenic | 35.0% |
| TTGTACTTATTATTGGCCGT+AGG | - | chr4_1:46140603-46140622 | None:intergenic | 35.0% | |
| CAAACAAGTGTAGAAATTGG+AGG | + | chr4_1:46140770-46140789 | Msa0550580:CDS | 35.0% | |
| ATTGGAGGACATGTATTTAG+TGG | + | chr4_1:46140785-46140804 | Msa0550580:CDS | 35.0% | |
| !! | GTATTGAAGCTTTGTTGATC+AGG | - | chr4_1:46140830-46140849 | None:intergenic | 35.0% |
| !! | AGGGAAAGAAGAAGTGTTAA+AGG | + | chr4_1:46140153-46140172 | Msa0550580:CDS | 35.0% |
| !! | GGGAAAGAAGAAGTGTTAAA+GGG | + | chr4_1:46140154-46140173 | Msa0550580:CDS | 35.0% |
| AGAAGTTGCTGCAAAAACAA+AGG | + | chr4_1:46140235-46140254 | Msa0550580:CDS | 35.0% | |
| AAGTGCTTCTGATATGTGTT+TGG | - | chr4_1:46140270-46140289 | None:intergenic | 35.0% | |
| !! | AAACACATATCAGAAGCACT+TGG | + | chr4_1:46140269-46140288 | Msa0550580:CDS | 35.0% |
| ACCACCTTCATGAACATAAA+AGG | + | chr4_1:46140341-46140360 | Msa0550580:CDS | 35.0% | |
| ! | TGTGCCTTTTATGTTCATGA+AGG | - | chr4_1:46140348-46140367 | None:intergenic | 35.0% |
| TTGTACTTATTATTGGCCGT+AGG | - | chr4_1:46140603-46140622 | None:intergenic | 35.0% | |
| CAAACAAGTGTAGAAATTGG+AGG | + | chr4_1:46140770-46140789 | Msa0550580:CDS | 35.0% | |
| ATTGGAGGACATGTATTTAG+TGG | + | chr4_1:46140785-46140804 | Msa0550580:CDS | 35.0% | |
| !! | GTATTGAAGCTTTGTTGATC+AGG | - | chr4_1:46140830-46140849 | None:intergenic | 35.0% |
| ! | GTCTGAAATGTCAAGACTGT+GGG | + | chr4_1:46140176-46140195 | Msa0550580:CDS | 40.0% |
| ATGCACAATCCTTCTTTGCT+TGG | - | chr4_1:46140204-46140223 | None:intergenic | 40.0% | |
| AGAAGGATTGTGCATACTCA+AGG | + | chr4_1:46140209-46140228 | Msa0550580:CDS | 40.0% | |
| ! | GCCTTTTATGTTCATGAAGG+TGG | - | chr4_1:46140345-46140364 | None:intergenic | 40.0% |
| CGGCCAATAATAAGTACAAG+AGG | + | chr4_1:46140604-46140623 | Msa0550580:intron | 40.0% | |
| GGACGAAACGGTTAATGAAA+CGG | + | chr4_1:46140742-46140761 | Msa0550580:CDS | 40.0% | |
| AGTAGTAATGCAATCCACAC+AGG | + | chr4_1:46140890-46140909 | Msa0550580:CDS | 40.0% | |
| ! | GTCTGAAATGTCAAGACTGT+GGG | + | chr4_1:46140176-46140195 | Msa0550580:CDS | 40.0% |
| ATGCACAATCCTTCTTTGCT+TGG | - | chr4_1:46140204-46140223 | None:intergenic | 40.0% | |
| AGAAGGATTGTGCATACTCA+AGG | + | chr4_1:46140209-46140228 | Msa0550580:CDS | 40.0% | |
| ! | GCCTTTTATGTTCATGAAGG+TGG | - | chr4_1:46140345-46140364 | None:intergenic | 40.0% |
| CGGCCAATAATAAGTACAAG+AGG | + | chr4_1:46140604-46140623 | Msa0550580:intron | 40.0% | |
| GGACGAAACGGTTAATGAAA+CGG | + | chr4_1:46140742-46140761 | Msa0550580:CDS | 40.0% | |
| AGTAGTAATGCAATCCACAC+AGG | + | chr4_1:46140890-46140909 | Msa0550580:CDS | 40.0% | |
| ! | GGTCTGAAATGTCAAGACTG+TGG | + | chr4_1:46140175-46140194 | Msa0550580:CDS | 45.0% |
| CATTCTGTGACGCCTTCTAT+CGG | - | chr4_1:46140302-46140321 | None:intergenic | 45.0% | |
| TCCAGCTGTTACAAGTTCCA+TGG | + | chr4_1:46140688-46140707 | Msa0550580:CDS | 45.0% | |
| AACACATGTCAATGTGGCCA+TGG | - | chr4_1:46140708-46140727 | None:intergenic | 45.0% | |
| CACCTGAACACATGTCAATG+TGG | - | chr4_1:46140714-46140733 | None:intergenic | 45.0% | |
| GCAAGTGCAAGTGCAACTAT+AGG | + | chr4_1:46140923-46140942 | Msa0550580:CDS | 45.0% | |
| CTGAAAGATGGCAATGGATG+CGG | - | chr4_1:46140986-46141005 | None:intergenic | 45.0% | |
| ! | GGTCTGAAATGTCAAGACTG+TGG | + | chr4_1:46140175-46140194 | Msa0550580:CDS | 45.0% |
| CATTCTGTGACGCCTTCTAT+CGG | - | chr4_1:46140302-46140321 | None:intergenic | 45.0% | |
| TCCAGCTGTTACAAGTTCCA+TGG | + | chr4_1:46140688-46140707 | Msa0550580:CDS | 45.0% | |
| AACACATGTCAATGTGGCCA+TGG | - | chr4_1:46140708-46140727 | None:intergenic | 45.0% | |
| CACCTGAACACATGTCAATG+TGG | - | chr4_1:46140714-46140733 | None:intergenic | 45.0% | |
| GCAAGTGCAAGTGCAACTAT+AGG | + | chr4_1:46140923-46140942 | Msa0550580:CDS | 45.0% | |
| CTGAAAGATGGCAATGGATG+CGG | - | chr4_1:46140986-46141005 | None:intergenic | 45.0% | |
| CTGTGGGAACCAAGCAAAGA+AGG | + | chr4_1:46140192-46140211 | Msa0550580:CDS | 50.0% | |
| CTTGGATTCCTGCCGATAGA+AGG | + | chr4_1:46140287-46140306 | Msa0550580:CDS | 50.0% | |
| !! | CGATAGAAGGCGTCACAGAA+TGG | + | chr4_1:46140300-46140319 | Msa0550580:CDS | 50.0% |
| !! | TGAAGGTGGTGCTGATCAGA+AGG | - | chr4_1:46140331-46140350 | None:intergenic | 50.0% |
| GCCATGGAACTTGTAACAGC+TGG | - | chr4_1:46140692-46140711 | None:intergenic | 50.0% | |
| GGCCACATTGACATGTGTTC+AGG | + | chr4_1:46140709-46140728 | Msa0550580:CDS | 50.0% | |
| ATGTGTTCAGGTGCGCTCTA+TGG | + | chr4_1:46140721-46140740 | Msa0550580:CDS | 50.0% | |
| GCAATCCACACAGGTGATGA+TGG | + | chr4_1:46140899-46140918 | Msa0550580:CDS | 50.0% | |
| TTGCACCATCATCACCTGTG+TGG | - | chr4_1:46140907-46140926 | None:intergenic | 50.0% | |
| AAAGATGGCAATGGATGCGG+TGG | - | chr4_1:46140983-46141002 | None:intergenic | 50.0% | |
| CGCATCCATTGCCATCTTTC+AGG | + | chr4_1:46140984-46141003 | Msa0550580:CDS | 50.0% | |
| CTGTGGGAACCAAGCAAAGA+AGG | + | chr4_1:46140192-46140211 | Msa0550580:CDS | 50.0% | |
| CTTGGATTCCTGCCGATAGA+AGG | + | chr4_1:46140287-46140306 | Msa0550580:CDS | 50.0% | |
| !! | CGATAGAAGGCGTCACAGAA+TGG | + | chr4_1:46140300-46140319 | Msa0550580:CDS | 50.0% |
| !! | TGAAGGTGGTGCTGATCAGA+AGG | - | chr4_1:46140331-46140350 | None:intergenic | 50.0% |
| GCCATGGAACTTGTAACAGC+TGG | - | chr4_1:46140692-46140711 | None:intergenic | 50.0% | |
| GGCCACATTGACATGTGTTC+AGG | + | chr4_1:46140709-46140728 | Msa0550580:CDS | 50.0% | |
| ATGTGTTCAGGTGCGCTCTA+TGG | + | chr4_1:46140721-46140740 | Msa0550580:CDS | 50.0% | |
| GCAATCCACACAGGTGATGA+TGG | + | chr4_1:46140899-46140918 | Msa0550580:CDS | 50.0% | |
| TTGCACCATCATCACCTGTG+TGG | - | chr4_1:46140907-46140926 | None:intergenic | 50.0% | |
| AAAGATGGCAATGGATGCGG+TGG | - | chr4_1:46140983-46141002 | None:intergenic | 50.0% | |
| CGCATCCATTGCCATCTTTC+AGG | + | chr4_1:46140984-46141003 | Msa0550580:CDS | 50.0% | |
| !! | GGTGGTGCTGATCAGAAGGA+TGG | - | chr4_1:46140327-46140346 | None:intergenic | 55.0% |
| GGTGCGCTCTATGGACGAAA+CGG | + | chr4_1:46140730-46140749 | Msa0550580:CDS | 55.0% | |
| CCATTGCCATCTTTCAGGCC+CGG | + | chr4_1:46140989-46141008 | Msa0550580:CDS | 55.0% | |
| !! | GGTGGTGCTGATCAGAAGGA+TGG | - | chr4_1:46140327-46140346 | None:intergenic | 55.0% |
| GGTGCGCTCTATGGACGAAA+CGG | + | chr4_1:46140730-46140749 | Msa0550580:CDS | 55.0% | |
| CCATTGCCATCTTTCAGGCC+CGG | + | chr4_1:46140989-46141008 | Msa0550580:CDS | 55.0% | |
| CTGTGACGCCTTCTATCGGC+AGG | - | chr4_1:46140298-46140317 | None:intergenic | 60.0% | |
| GATGGCAATGGATGCGGTGG+AGG | - | chr4_1:46140980-46140999 | None:intergenic | 60.0% | |
| CCGGGCCTGAAAGATGGCAA+TGG | - | chr4_1:46140992-46141011 | None:intergenic | 60.0% | |
| GGCATACCGGGCCTGAAAGA+TGG | - | chr4_1:46140998-46141017 | None:intergenic | 60.0% | |
| CTGTGACGCCTTCTATCGGC+AGG | - | chr4_1:46140298-46140317 | None:intergenic | 60.0% | |
| GATGGCAATGGATGCGGTGG+AGG | - | chr4_1:46140980-46140999 | None:intergenic | 60.0% | |
| CCGGGCCTGAAAGATGGCAA+TGG | - | chr4_1:46140992-46141011 | None:intergenic | 60.0% | |
| GGCATACCGGGCCTGAAAGA+TGG | - | chr4_1:46140998-46141017 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 46140136 | 46141024 | 46140136 | ID=Msa0550580;Name=Msa0550580 |
| chr4_1 | mRNA | 46140136 | 46141024 | 46140136 | ID=Msa0550580-mRNA-1;Parent=Msa0550580;Name=Msa0550580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0|1|1|1|2|0|202 |
| chr4_1 | exon | 46140136 | 46140388 | 46140136 | ID=Msa0550580-mRNA-1:exon:12256;Parent=Msa0550580-mRNA-1 |
| chr4_1 | exon | 46140669 | 46141024 | 46140669 | ID=Msa0550580-mRNA-1:exon:12257;Parent=Msa0550580-mRNA-1 |
| chr4_1 | CDS | 46140136 | 46140388 | 46140136 | ID=Msa0550580-mRNA-1:cds;Parent=Msa0550580-mRNA-1 |
| chr4_1 | CDS | 46140669 | 46141024 | 46140669 | ID=Msa0550580-mRNA-1:cds;Parent=Msa0550580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
