Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551110 | XP_039683216.1 | 55.267 | 655 | 230 | 3 | 162 | 753 | 57 | 711 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551110 | sp|Q9SZL8|FRS5_ARATH | 27.677 | 607 | 362 | 12 | 183 | 717 | 77 | 678 | 2.44e-62 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551110 | A0A396J342 | 55.267 | 655 | 230 | 3 | 162 | 753 | 58 | 712 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0551110 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551110 | MtrunA17_Chr2g0287651 | 55.267 | 655 | 230 | 3 | 162 | 753 | 58 | 712 | 0.0 | 753 |
| Msa0551110 | MtrunA17_Chr1g0203051 | 31.209 | 612 | 350 | 6 | 110 | 652 | 4 | 613 | 3.38e-99 | 320 |
| Msa0551110 | MtrunA17_Chr1g0202341 | 26.643 | 563 | 343 | 10 | 178 | 673 | 50 | 609 | 3.91e-62 | 221 |
| Msa0551110 | MtrunA17_Chr5g0448761 | 28.191 | 564 | 330 | 10 | 183 | 673 | 64 | 625 | 1.30e-59 | 216 |
| Msa0551110 | MtrunA17_Chr3g0082121 | 27.903 | 663 | 355 | 17 | 182 | 754 | 46 | 675 | 3.38e-59 | 213 |
| Msa0551110 | MtrunA17_Chr8g0363841 | 27.240 | 558 | 330 | 11 | 187 | 673 | 25 | 577 | 9.27e-59 | 211 |
| Msa0551110 | MtrunA17_Chr3g0080351 | 26.365 | 641 | 393 | 13 | 154 | 732 | 56 | 679 | 6.07e-58 | 212 |
| Msa0551110 | MtrunA17_Chr5g0441581 | 26.227 | 591 | 351 | 13 | 183 | 702 | 36 | 612 | 8.25e-58 | 209 |
| Msa0551110 | MtrunA17_Chr2g0324011 | 26.288 | 563 | 345 | 5 | 183 | 678 | 14 | 573 | 3.60e-57 | 205 |
| Msa0551110 | MtrunA17_Chr6g0458391 | 27.648 | 557 | 347 | 12 | 170 | 674 | 214 | 766 | 3.72e-55 | 202 |
| Msa0551110 | MtrunA17_Chr6g0458391 | 38.462 | 117 | 65 | 5 | 183 | 297 | 95 | 206 | 4.71e-13 | 72.8 |
| Msa0551110 | MtrunA17_Chr2g0296781 | 24.962 | 661 | 410 | 14 | 183 | 765 | 1 | 653 | 4.16e-52 | 193 |
| Msa0551110 | MtrunA17_Chr1g0207551 | 25.983 | 585 | 355 | 14 | 183 | 699 | 38 | 612 | 2.81e-51 | 192 |
| Msa0551110 | MtrunA17_Chr1g0203721 | 25.116 | 645 | 400 | 14 | 176 | 742 | 61 | 700 | 9.15e-50 | 188 |
| Msa0551110 | MtrunA17_Chr6g0477261 | 25.479 | 522 | 330 | 9 | 302 | 768 | 28 | 545 | 1.84e-47 | 179 |
| Msa0551110 | MtrunA17_Chr2g0329031 | 24.698 | 579 | 364 | 12 | 182 | 699 | 17 | 584 | 3.45e-46 | 176 |
| Msa0551110 | MtrunA17_Chr1g0198761 | 25.152 | 660 | 399 | 20 | 185 | 760 | 53 | 701 | 1.25e-44 | 172 |
| Msa0551110 | MtrunA17_Chr5g0448511 | 27.670 | 412 | 253 | 8 | 362 | 729 | 45 | 455 | 2.47e-44 | 168 |
| Msa0551110 | MtrunA17_Chr2g0291581 | 26.748 | 572 | 313 | 15 | 183 | 673 | 75 | 621 | 8.05e-43 | 166 |
| Msa0551110 | MtrunA17_Chr2g0308841 | 32.174 | 230 | 155 | 1 | 451 | 679 | 4 | 233 | 3.03e-40 | 149 |
| Msa0551110 | MtrunA17_Chr2g0287061 | 25.360 | 556 | 311 | 17 | 184 | 675 | 188 | 703 | 7.89e-40 | 157 |
| Msa0551110 | MtrunA17_Chr2g0291591 | 25.984 | 508 | 292 | 13 | 166 | 602 | 52 | 546 | 1.76e-38 | 151 |
| Msa0551110 | MtrunA17_Chr1g0196541 | 21.536 | 664 | 430 | 14 | 183 | 768 | 1 | 651 | 3.68e-37 | 149 |
| Msa0551110 | MtrunA17_Chr5g0440451 | 23.274 | 623 | 362 | 18 | 175 | 709 | 39 | 633 | 6.45e-37 | 149 |
| Msa0551110 | MtrunA17_Chr2g0276841 | 23.368 | 582 | 319 | 16 | 185 | 670 | 76 | 626 | 8.53e-35 | 141 |
| Msa0551110 | MtrunA17_Chr3g0118611 | 24.213 | 413 | 268 | 7 | 329 | 699 | 118 | 527 | 1.80e-32 | 134 |
| Msa0551110 | MtrunA17_Chr5g0431001 | 25.527 | 427 | 227 | 9 | 185 | 528 | 67 | 485 | 2.13e-31 | 129 |
| Msa0551110 | MtrunA17_Chr2g0294841 | 22.735 | 607 | 384 | 15 | 142 | 668 | 2 | 603 | 5.63e-31 | 130 |
| Msa0551110 | MtrunA17_Chr2g0290391 | 21.254 | 574 | 356 | 12 | 183 | 674 | 55 | 614 | 2.50e-24 | 108 |
| Msa0551110 | MtrunA17_Chr1g0164591 | 26.578 | 301 | 161 | 6 | 265 | 506 | 8 | 307 | 2.26e-22 | 99.0 |
| Msa0551110 | MtrunA17_Chr8g0389811 | 35.507 | 138 | 84 | 2 | 148 | 280 | 48 | 185 | 9.12e-19 | 85.5 |
| Msa0551110 | MtrunA17_Chr7g0258861 | 27.197 | 239 | 146 | 3 | 183 | 395 | 14 | 250 | 8.73e-18 | 85.1 |
| Msa0551110 | MtrunA17_Chr1g0171741 | 30.000 | 190 | 120 | 5 | 95 | 281 | 55 | 234 | 4.60e-16 | 79.0 |
| Msa0551110 | MtrunA17_Chr1g0149131 | 34.579 | 107 | 65 | 1 | 401 | 502 | 4 | 110 | 6.86e-13 | 66.2 |
| Msa0551110 | MtrunA17_Chr6g0473421 | 34.921 | 126 | 71 | 2 | 131 | 254 | 14 | 130 | 1.38e-12 | 66.2 |
| Msa0551110 | MtrunA17_Chr2g0329361 | 38.532 | 109 | 65 | 2 | 173 | 280 | 55 | 162 | 4.01e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551110 | AT4G38180.1 | 27.677 | 607 | 362 | 12 | 183 | 717 | 77 | 678 | 2.48e-63 | 227 |
| Msa0551110 | AT3G22170.2 | 25.114 | 657 | 421 | 12 | 123 | 716 | 9 | 657 | 3.68e-60 | 218 |
| Msa0551110 | AT3G22170.1 | 25.114 | 657 | 421 | 12 | 123 | 716 | 9 | 657 | 3.68e-60 | 218 |
| Msa0551110 | AT4G15090.1 | 25.926 | 594 | 365 | 13 | 183 | 708 | 55 | 641 | 9.63e-60 | 217 |
| Msa0551110 | AT4G15090.5 | 25.926 | 594 | 365 | 13 | 183 | 708 | 55 | 641 | 9.63e-60 | 217 |
| Msa0551110 | AT4G15090.3 | 25.926 | 594 | 365 | 13 | 183 | 708 | 55 | 641 | 9.63e-60 | 217 |
| Msa0551110 | AT4G15090.2 | 25.926 | 594 | 365 | 13 | 183 | 708 | 55 | 641 | 9.63e-60 | 217 |
| Msa0551110 | AT4G15090.4 | 25.926 | 594 | 365 | 13 | 183 | 708 | 55 | 641 | 9.63e-60 | 217 |
| Msa0551110 | AT4G19990.3 | 25.078 | 642 | 363 | 17 | 184 | 737 | 26 | 637 | 5.44e-51 | 191 |
| Msa0551110 | AT4G19990.4 | 25.078 | 642 | 363 | 17 | 184 | 737 | 26 | 637 | 5.44e-51 | 191 |
| Msa0551110 | AT4G19990.7 | 25.078 | 642 | 363 | 17 | 184 | 737 | 40 | 651 | 8.71e-51 | 191 |
| Msa0551110 | AT4G19990.6 | 25.078 | 642 | 363 | 17 | 184 | 737 | 26 | 637 | 9.05e-51 | 191 |
| Msa0551110 | AT4G19990.2 | 25.078 | 642 | 363 | 17 | 184 | 737 | 26 | 637 | 9.05e-51 | 191 |
| Msa0551110 | AT4G19990.5 | 25.078 | 642 | 363 | 17 | 184 | 737 | 26 | 637 | 9.17e-51 | 190 |
| Msa0551110 | AT1G76320.2 | 26.534 | 554 | 334 | 11 | 183 | 673 | 1 | 544 | 3.03e-46 | 177 |
| Msa0551110 | AT1G76320.1 | 26.534 | 554 | 334 | 11 | 183 | 673 | 1 | 544 | 3.20e-46 | 177 |
| Msa0551110 | AT1G76320.4 | 26.534 | 554 | 334 | 11 | 183 | 673 | 1 | 544 | 3.20e-46 | 177 |
| Msa0551110 | AT1G76320.3 | 26.534 | 554 | 334 | 11 | 183 | 673 | 1 | 544 | 3.75e-46 | 176 |
| Msa0551110 | AT4G19990.1 | 25.088 | 570 | 325 | 14 | 242 | 737 | 39 | 580 | 6.74e-46 | 175 |
| Msa0551110 | AT3G06250.2 | 26.888 | 543 | 321 | 17 | 183 | 677 | 194 | 708 | 2.59e-44 | 171 |
| Msa0551110 | AT3G06250.1 | 26.888 | 543 | 321 | 17 | 183 | 677 | 194 | 708 | 2.59e-44 | 171 |
| Msa0551110 | AT3G06250.3 | 26.888 | 543 | 321 | 17 | 183 | 677 | 194 | 708 | 2.59e-44 | 171 |
| Msa0551110 | AT1G52520.1 | 26.034 | 580 | 337 | 14 | 183 | 686 | 89 | 652 | 4.66e-43 | 167 |
| Msa0551110 | AT5G18960.2 | 25.229 | 547 | 328 | 16 | 183 | 677 | 215 | 732 | 4.61e-39 | 155 |
| Msa0551110 | AT5G18960.1 | 25.229 | 547 | 328 | 16 | 183 | 677 | 215 | 732 | 4.61e-39 | 155 |
| Msa0551110 | AT1G80010.1 | 24.830 | 588 | 346 | 15 | 183 | 686 | 99 | 674 | 1.34e-37 | 150 |
| Msa0551110 | AT2G27110.2 | 24.269 | 581 | 359 | 19 | 177 | 699 | 47 | 604 | 5.42e-34 | 140 |
| Msa0551110 | AT2G27110.1 | 24.269 | 581 | 359 | 19 | 177 | 699 | 47 | 604 | 5.42e-34 | 140 |
| Msa0551110 | AT2G32250.2 | 21.239 | 565 | 379 | 11 | 183 | 705 | 42 | 582 | 1.43e-33 | 139 |
| Msa0551110 | AT2G32250.4 | 21.239 | 565 | 379 | 11 | 183 | 705 | 42 | 582 | 1.43e-33 | 139 |
| Msa0551110 | AT2G32250.6 | 21.239 | 565 | 379 | 11 | 183 | 705 | 42 | 582 | 1.56e-33 | 138 |
| Msa0551110 | AT2G32250.1 | 21.239 | 565 | 379 | 11 | 183 | 705 | 42 | 582 | 1.56e-33 | 138 |
| Msa0551110 | AT2G32250.3 | 21.239 | 565 | 379 | 11 | 183 | 705 | 42 | 582 | 1.56e-33 | 138 |
| Msa0551110 | AT2G32250.7 | 21.239 | 565 | 379 | 11 | 183 | 705 | 1 | 541 | 2.33e-33 | 137 |
| Msa0551110 | AT2G32250.8 | 21.239 | 565 | 379 | 11 | 183 | 705 | 1 | 541 | 2.47e-33 | 137 |
| Msa0551110 | AT2G32250.5 | 21.239 | 565 | 379 | 11 | 183 | 705 | 42 | 582 | 3.31e-33 | 137 |
| Msa0551110 | AT1G10240.2 | 22.565 | 616 | 348 | 17 | 155 | 670 | 18 | 604 | 3.45e-33 | 137 |
| Msa0551110 | AT1G10240.1 | 22.565 | 616 | 348 | 17 | 155 | 670 | 18 | 604 | 3.45e-33 | 137 |
| Msa0551110 | AT4G38170.1 | 25.128 | 390 | 240 | 10 | 330 | 674 | 18 | 400 | 4.78e-32 | 132 |
| Msa0551110 | AT2G27110.3 | 24.213 | 413 | 267 | 10 | 329 | 699 | 51 | 459 | 7.15e-29 | 123 |
| Msa0551110 | AT5G28530.1 | 23.345 | 574 | 340 | 16 | 185 | 672 | 61 | 620 | 4.05e-28 | 121 |
| Msa0551110 | AT5G28530.3 | 23.345 | 574 | 336 | 16 | 185 | 672 | 61 | 616 | 1.09e-27 | 119 |
| Msa0551110 | AT5G28530.2 | 23.345 | 574 | 336 | 16 | 185 | 672 | 61 | 616 | 1.09e-27 | 119 |
| Msa0551110 | AT5G28530.4 | 23.194 | 526 | 337 | 14 | 185 | 672 | 61 | 557 | 2.41e-26 | 115 |
| Msa0551110 | AT5G28530.5 | 23.194 | 526 | 333 | 14 | 185 | 672 | 61 | 553 | 1.05e-25 | 113 |
| Msa0551110 | AT3G07500.1 | 34.416 | 154 | 85 | 6 | 153 | 299 | 2 | 146 | 3.30e-11 | 64.3 |
Find 123 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGACTTTACATATTT+TGG | 0.064520 | 4_1:-46904943 | Msa0551110:CDS |
| AGGATGAATTTGAAGAATTT+TGG | 0.091768 | 4_1:-46903387 | Msa0551110:CDS |
| GACGTTTGAAATGTCTATTT+TGG | 0.234421 | 4_1:-46903808 | Msa0551110:CDS |
| TGCATTTACACCCTGTTTAT+CGG | 0.264525 | 4_1:-46904093 | Msa0551110:CDS |
| TGTTCACTACAGACCCAAAA+AGG | 0.266221 | 4_1:-46904179 | Msa0551110:CDS |
| CCATCTATTACAACTGCTTT+TGG | 0.266945 | 4_1:+46903562 | None:intergenic |
| TTCTTTGTTCTCATATGTTT+TGG | 0.278033 | 4_1:+46903318 | None:intergenic |
| CCTGATGTTCCAATTGTTAC+TGG | 0.290685 | 4_1:-46902572 | Msa0551110:CDS |
| TTTGTTGCGTTGGACGAAAA+AGG | 0.308114 | 4_1:-46902777 | Msa0551110:CDS |
| AGTGATGATGGTGGTTGTTC+TGG | 0.317361 | 4_1:-46904697 | Msa0551110:CDS |
| CATTAACTGCTGAAGGAATA+AGG | 0.318241 | 4_1:-46904435 | Msa0551110:CDS |
| TGCTGAAGGAATAAGGAAAA+TGG | 0.318497 | 4_1:-46904428 | Msa0551110:CDS |
| CTGTTAGGAAGAGTGATATT+AGG | 0.340554 | 4_1:-46904342 | Msa0551110:CDS |
| TTCTATGAGGGAGGCGATAA+AGG | 0.353001 | 4_1:-46903533 | Msa0551110:CDS |
| AAGAGTTATGTTAGGAAGAA+AGG | 0.363884 | 4_1:-46903211 | Msa0551110:CDS |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.364482 | 4_1:+46904119 | None:intergenic |
| CCAAAAGCAGTTGTAATAGA+TGG | 0.375472 | 4_1:-46903562 | Msa0551110:CDS |
| AAGGGTGGATATCCTGGTGC+TGG | 0.375600 | 4_1:-46903980 | Msa0551110:CDS |
| CCAGTAACAATTGGAACATC+AGG | 0.382600 | 4_1:+46902572 | None:intergenic |
| AACATTTATCAATGTTAGAT+AGG | 0.383970 | 4_1:-46904252 | Msa0551110:CDS |
| GTTGAGTTTCCAGTAACAAT+TGG | 0.399158 | 4_1:+46902563 | None:intergenic |
| AGGTCAGATTATTTCTGCTT+TGG | 0.407082 | 4_1:-46903770 | Msa0551110:CDS |
| GGTACACCGGAACATGATTA+CGG | 0.407134 | 4_1:-46904922 | Msa0551110:CDS |
| TGCTCCAAAGAAGAAGAAAA+AGG | 0.408279 | 4_1:-46902498 | Msa0551110:CDS |
| CGAAGTAGATTCTAAATTGA+TGG | 0.408498 | 4_1:-46902720 | Msa0551110:CDS |
| GCTCAGAAGGGTGGATATCC+TGG | 0.409450 | 4_1:-46903986 | Msa0551110:intron |
| CATAGACGATGACGCGTACT+TGG | 0.409842 | 4_1:+46903502 | None:intergenic |
| GGATGACATACAAAAGCTTC+AGG | 0.411801 | 4_1:-46902609 | Msa0551110:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | 4_1:-46904673 | Msa0551110:CDS |
| TACCTGCGTGACGATTTCTT+TGG | 0.423240 | 4_1:-46903280 | Msa0551110:CDS |
| GGAGCACCTTTGCACTTCAC+TGG | 0.435097 | 4_1:+46902515 | None:intergenic |
| GATGAGTGGTATGATGAAAC+TGG | 0.440376 | 4_1:-46904730 | Msa0551110:CDS |
| GATATTAGGCGCAATGTTAA+CGG | 0.449906 | 4_1:-46904328 | Msa0551110:CDS |
| GCTGAAGATGATGTAGTTGT+TGG | 0.449913 | 4_1:-46904481 | Msa0551110:CDS |
| AAATCATAAAGAGTTATGTT+AGG | 0.452282 | 4_1:-46903219 | Msa0551110:CDS |
| CTGCGTGACGATTTCTTTGG+TGG | 0.454197 | 4_1:-46903277 | Msa0551110:CDS |
| TGATTACGGTTCTACGTATG+TGG | 0.455917 | 4_1:-46904908 | Msa0551110:CDS |
| TATAAGTACGGTAAGTGTAA+AGG | 0.460291 | 4_1:-46904370 | Msa0551110:CDS |
| ACAAAATCACCAACGGATAG+TGG | 0.461754 | 4_1:+46903705 | None:intergenic |
| AAACATATTCGATCATTGTT+GGG | 0.462300 | 4_1:-46904873 | Msa0551110:CDS |
| TAGTGAACACGGAGCCTAGC+TGG | 0.466097 | 4_1:+46904193 | None:intergenic |
| GAAACATATTCGATCATTGT+TGG | 0.474938 | 4_1:-46904874 | Msa0551110:CDS |
| TTGATGGAGATAGCTCGATA+TGG | 0.482119 | 4_1:-46902704 | Msa0551110:CDS |
| CAGCACAGGGGATGAAAACC+TGG | 0.488423 | 4_1:+46903108 | None:intergenic |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | 4_1:-46904682 | Msa0551110:CDS |
| CGAGGCTGCTGAAATCTATA+CGG | 0.490901 | 4_1:-46903059 | Msa0551110:CDS |
| TGCAAATGAGTTGTCAGCAC+AGG | 0.496005 | 4_1:+46903094 | None:intergenic |
| GTAGAACCGTAATCATGTTC+CGG | 0.499917 | 4_1:+46904916 | None:intergenic |
| TGTAGTTGTTGGTGAGGAAA+TGG | 0.504666 | 4_1:-46904470 | Msa0551110:CDS |
| CCTTTGCACTTCACTGGCAA+TGG | 0.506348 | 4_1:+46902521 | None:intergenic |
| GTGAAAGAAGAGATTATGAA+AGG | 0.507624 | 4_1:-46903019 | Msa0551110:CDS |
| ATATGAGAACAAAGAATTGT+GGG | 0.511340 | 4_1:-46903311 | Msa0551110:CDS |
| AAGAATACTCAAGGGAATAC+AGG | 0.512005 | 4_1:-46904754 | Msa0551110:CDS |
| AGTGGCAGAATATTCACAAA+AGG | 0.514210 | 4_1:+46903838 | None:intergenic |
| TCGATCATTGTTGGGAGTGG+TGG | 0.518952 | 4_1:-46904865 | Msa0551110:CDS |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 4_1:-46904442 | Msa0551110:CDS |
| TAACCCATGGATTGTTCTCA+AGG | 0.524044 | 4_1:+46903341 | None:intergenic |
| TTCTTAGTGAACCCAGCACC+AGG | 0.528764 | 4_1:+46903968 | None:intergenic |
| TAGATGGTGATGGTTCTATG+AGG | 0.532842 | 4_1:-46903546 | Msa0551110:CDS |
| TGTTTATCGGAAAATATTCA+AGG | 0.533520 | 4_1:-46904080 | Msa0551110:intron |
| CAGCAATTCAGTGTCCGTGC+AGG | 0.535206 | 4_1:-46902886 | Msa0551110:CDS |
| GCATCTGAACAAGAATGCTA+TGG | 0.538265 | 4_1:-46903473 | Msa0551110:CDS |
| TATTCGATCATTGTTGGGAG+TGG | 0.541103 | 4_1:-46904868 | Msa0551110:CDS |
| AGGGTGGATATCCTGGTGCT+GGG | 0.543102 | 4_1:-46903979 | Msa0551110:CDS |
| TAGCTTGTATGCTAATGTGC+TGG | 0.547303 | 4_1:-46902630 | Msa0551110:CDS |
| CATATGAGAACAAAGAATTG+TGG | 0.552735 | 4_1:-46903312 | Msa0551110:CDS |
| ATGTGTGCTGTTATTAAGGA+TGG | 0.553864 | 4_1:-46903917 | Msa0551110:CDS |
| GCAAATGAGTTGTCAGCACA+GGG | 0.554395 | 4_1:+46903095 | None:intergenic |
| AGATGGTGATGGTTCTATGA+GGG | 0.560374 | 4_1:-46903545 | Msa0551110:CDS |
| GAAGATTGGTTTCTTGAATG+TGG | 0.561039 | 4_1:-46902753 | Msa0551110:CDS |
| GATGAAAGTCAAAGTGATGA+AGG | 0.563150 | 4_1:-46904628 | Msa0551110:CDS |
| TGTAAATGCACAGCATTGGT+TGG | 0.565762 | 4_1:+46904106 | None:intergenic |
| TTATTTCTGCTTTGGCGACG+TGG | 0.568625 | 4_1:-46903762 | Msa0551110:CDS |
| ATTGCCTTGAGAACAATCCA+TGG | 0.571273 | 4_1:-46903345 | Msa0551110:CDS |
| TTGTTGGTGAGGAAATGGTA+AGG | 0.572827 | 4_1:-46904465 | Msa0551110:CDS |
| TACATGGTGGCTCAGAAGGG+TGG | 0.573659 | 4_1:-46903995 | Msa0551110:intron |
| GCAGGAAATTTGAATCTCGA+GGG | 0.574935 | 4_1:-46902868 | Msa0551110:CDS |
| CTGACAAAATATCTTGAGGA+AGG | 0.575391 | 4_1:-46902941 | Msa0551110:CDS |
| TTTGCATTGTCTTGAGCGCG+AGG | 0.584146 | 4_1:-46903077 | Msa0551110:CDS |
| AGGGTGTAAATGCACAGCAT+TGG | 0.584309 | 4_1:+46904102 | None:intergenic |
| TGCAGGAAATTTGAATCTCG+AGG | 0.585339 | 4_1:-46902869 | Msa0551110:CDS |
| AGTATGTATGCAACAAGCAA+AGG | 0.588107 | 4_1:-46904288 | Msa0551110:CDS |
| GATGAAGGTGAACGTGATGA+AGG | 0.589312 | 4_1:-46904613 | Msa0551110:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | 4_1:-46904661 | Msa0551110:CDS |
| TTTGGGCAGATGGCACAAGT+AGG | 0.590819 | 4_1:-46903790 | Msa0551110:CDS |
| CGAGATTCAAATTTCCTGCA+CGG | 0.592455 | 4_1:+46902872 | None:intergenic |
| GAAGGTGAACGTGATGAAGG+TGG | 0.592672 | 4_1:-46904610 | Msa0551110:CDS |
| GAAGCTGACAAAATATCTTG+AGG | 0.598241 | 4_1:-46902945 | Msa0551110:CDS |
| TTGCCTTGAGAACAATCCAT+GGG | 0.599082 | 4_1:-46903344 | Msa0551110:CDS |
| GAATATTCTGCCACTGATGA+CGG | 0.599778 | 4_1:-46903830 | Msa0551110:CDS |
| TTCTTGAATGTGGACTATTG+TGG | 0.602499 | 4_1:-46902743 | Msa0551110:CDS |
| GAATATTCACAAAAGGAATG+TGG | 0.603006 | 4_1:+46903845 | None:intergenic |
| CAGTAACAATTGGAACATCA+GGG | 0.606493 | 4_1:+46902573 | None:intergenic |
| GGAGACAATGAAAGTGATGA+TGG | 0.609236 | 4_1:-46904709 | Msa0551110:CDS |
| AAAGGAATGTGGATCAGTTG+AGG | 0.611183 | 4_1:+46903856 | None:intergenic |
| AGTGATGGTCATGGTAGTGA+AGG | 0.614950 | 4_1:-46904517 | Msa0551110:CDS |
| GCAGTTGTAATAGATGGTGA+TGG | 0.618869 | 4_1:-46903556 | Msa0551110:CDS |
| TTTCAAACGTCCGTCATCAG+TGG | 0.632560 | 4_1:+46903820 | None:intergenic |
| TGCACAGCATTGGTTGGAGT+AGG | 0.638605 | 4_1:+46904112 | None:intergenic |
| TGTTACTGGAAACTCAACAA+TGG | 0.640006 | 4_1:-46902558 | Msa0551110:CDS |
| GGTGATGAAAGTGATGGTCA+TGG | 0.641830 | 4_1:-46904526 | Msa0551110:CDS |
| GAACAAATACCACTATCCGT+TGG | 0.644673 | 4_1:-46903714 | Msa0551110:intron |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | 4_1:-46904207 | Msa0551110:CDS |
| GGTGAACGTGATGAAGGTGG+AGG | 0.647603 | 4_1:-46904607 | Msa0551110:CDS |
| CAGGAAATTTGAATCTCGAG+GGG | 0.648693 | 4_1:-46902867 | Msa0551110:CDS |
| TGGTGATGGTTCTATGAGGG+AGG | 0.649015 | 4_1:-46903542 | Msa0551110:CDS |
| AGTGAAGGTGATGAAAATGA+AGG | 0.651774 | 4_1:-46904577 | Msa0551110:CDS |
| GGTGATGAAAATGAAGGTCA+TGG | 0.656750 | 4_1:-46904571 | Msa0551110:CDS |
| TATGAGGGAGGCGATAAAGG+CGG | 0.662119 | 4_1:-46903530 | Msa0551110:CDS |
| CACCAAAGAAATCGTCACGC+AGG | 0.662756 | 4_1:+46903278 | None:intergenic |
| AAGGGAATACAGGTGATGAG+TGG | 0.665038 | 4_1:-46904744 | Msa0551110:CDS |
| GATGATGATGATGTGAGTCA+TGG | 0.679569 | 4_1:-46904787 | Msa0551110:CDS |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | 4_1:-46904312 | Msa0551110:CDS |
| AGATGATGTAGTTGTTGGTG+AGG | 0.681737 | 4_1:-46904476 | Msa0551110:CDS |
| AGGTGTTGCACTGAGTGTGA+AGG | 0.686205 | 4_1:-46902999 | Msa0551110:CDS |
| CCATTGCCAGTGAAGTGCAA+AGG | 0.692298 | 4_1:-46902521 | Msa0551110:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.694719 | 4_1:-46904547 | Msa0551110:CDS |
| CTGGCAATGGATCACGTACG+TGG | 0.695647 | 4_1:+46902534 | None:intergenic |
| GGTGGAGGTGATGAAAGTGA+AGG | 0.700815 | 4_1:-46904592 | Msa0551110:CDS |
| AGTGAAGGTGATGAAAGTGA+TGG | 0.701459 | 4_1:-46904532 | Msa0551110:CDS |
| GACAATGAAAGTGATGATGG+TGG | 0.706532 | 4_1:-46904706 | Msa0551110:CDS |
| ACTTTGTACGAGTGAGACGT+CGG | 0.726283 | 4_1:+46904218 | None:intergenic |
| CAAATGAGTTGTCAGCACAG+GGG | 0.772263 | 4_1:+46903096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGATTTTTATTATAAGTA+CGG | - | chr4_1:46903057-46903076 | Msa0551110:CDS | 10.0% |
| !!! | AACAATGACTTTACATATTT+TGG | - | chr4_1:46902496-46902515 | Msa0551110:CDS | 20.0% |
| !! | AACATTTATCAATGTTAGAT+AGG | - | chr4_1:46903187-46903206 | Msa0551110:CDS | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr4_1:46903419-46903438 | Msa0551110:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr4_1:46903420-46903439 | Msa0551110:CDS | 20.0% |
| !! | AAAATATAATTGTTTGTGAG+TGG | + | chr4_1:46903773-46903792 | None:intergenic | 20.0% |
| !! | AAACAATAGAAACTTATATG+TGG | - | chr4_1:46903814-46903833 | Msa0551110:CDS | 20.0% |
| !! | AACAATAGAAACTTATATGT+GGG | - | chr4_1:46903815-46903834 | Msa0551110:CDS | 20.0% |
| !! | AAATCATAAAGAGTTATGTT+AGG | - | chr4_1:46904220-46904239 | Msa0551110:CDS | 20.0% |
| !! | CTTCAACACAAAAAAAATAT+GGG | + | chr4_1:46904607-46904626 | None:intergenic | 20.0% |
| ! | AAACATATTCGATCATTGTT+GGG | - | chr4_1:46902566-46902585 | Msa0551110:CDS | 25.0% |
| !! | AATTTTACGAAGAATACTCA+AGG | - | chr4_1:46902676-46902695 | Msa0551110:CDS | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+GGG | - | chr4_1:46902677-46902696 | Msa0551110:CDS | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr4_1:46902997-46903016 | Msa0551110:CDS | 25.0% |
| !! | TGAATATTTTCCGATAAACA+GGG | + | chr4_1:46903359-46903378 | None:intergenic | 25.0% |
| !! | TTGAATATTTTCCGATAAAC+AGG | + | chr4_1:46903360-46903379 | None:intergenic | 25.0% |
| ! | TGTTTATCGGAAAATATTCA+AGG | - | chr4_1:46903359-46903378 | Msa0551110:CDS | 25.0% |
| !! | AAAAATGTGTGCTGTTATTA+AGG | - | chr4_1:46903518-46903537 | Msa0551110:CDS | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr4_1:46903632-46903651 | Msa0551110:intron | 25.0% |
| !! | AATTATATTTTGTGCTGCAT+TGG | - | chr4_1:46903782-46903801 | Msa0551110:CDS | 25.0% |
| !! | ACCAATTTTCTAGATTGTAT+GGG | - | chr4_1:46903843-46903862 | Msa0551110:CDS | 25.0% |
| !!! | AAGAATTCAGCTTTTTTGAA+AGG | - | chr4_1:46903997-46904016 | Msa0551110:intron | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr4_1:46904029-46904048 | Msa0551110:intron | 25.0% |
| !! | AGGATGAATTTGAAGAATTT+TGG | - | chr4_1:46904052-46904071 | Msa0551110:intron | 25.0% |
| !! | GGATGAATTTGAAGAATTTT+GGG | - | chr4_1:46904053-46904072 | Msa0551110:intron | 25.0% |
| !! | GATGAATTTGAAGAATTTTG+GGG | - | chr4_1:46904054-46904073 | Msa0551110:intron | 25.0% |
| !! | ATGAATTTGAAGAATTTTGG+GGG | - | chr4_1:46904055-46904074 | Msa0551110:intron | 25.0% |
| !! | TTCTTTGTTCTCATATGTTT+TGG | + | chr4_1:46904124-46904143 | None:intergenic | 25.0% |
| ! | ATATGAGAACAAAGAATTGT+GGG | - | chr4_1:46904128-46904147 | Msa0551110:CDS | 25.0% |
| !!! | ATTTCTGCATAATTTTGATG+AGG | - | chr4_1:46904263-46904282 | Msa0551110:CDS | 25.0% |
| ! | CCTTCAACACAAAAAAAATA+TGG | + | chr4_1:46904608-46904627 | None:intergenic | 25.0% |
| !!! | CCATATTTTTTTTGTGTTGA+AGG | - | chr4_1:46904605-46904624 | Msa0551110:CDS | 25.0% |
| !! | ATGTGTTTACAAATTTTTGC+AGG | - | chr4_1:46904769-46904788 | Msa0551110:CDS | 25.0% |
| !! | TGTGTTTACAAATTTTTGCA+GGG | - | chr4_1:46904770-46904789 | Msa0551110:CDS | 25.0% |
| !!! | CTTTACATATTTTGGTACAC+CGG | - | chr4_1:46902504-46902523 | Msa0551110:CDS | 30.0% |
| GAAACATATTCGATCATTGT+TGG | - | chr4_1:46902565-46902584 | Msa0551110:CDS | 30.0% | |
| TATAAGTACGGTAAGTGTAA+AGG | - | chr4_1:46903069-46903088 | Msa0551110:CDS | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr4_1:46903276-46903295 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr4_1:46903290-46903309 | Msa0551110:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr4_1:46903291-46903310 | Msa0551110:CDS | 30.0% |
| GTAGATAAAGCATAGATTGA+TGG | - | chr4_1:46903381-46903400 | Msa0551110:CDS | 30.0% | |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr4_1:46903428-46903447 | Msa0551110:CDS | 30.0% |
| GAATATTCACAAAAGGAATG+TGG | + | chr4_1:46903597-46903616 | None:intergenic | 30.0% | |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr4_1:46903631-46903650 | Msa0551110:intron | 30.0% |
| ! | GACCAATTTTCTAGATTGTA+TGG | - | chr4_1:46903842-46903861 | Msa0551110:CDS | 30.0% |
| TCCCATACAATCTAGAAAAT+TGG | + | chr4_1:46903847-46903866 | None:intergenic | 30.0% | |
| ! | AATGTACTCTAATTTTACGG+AGG | - | chr4_1:46904032-46904051 | Msa0551110:intron | 30.0% |
| ! | TGAATTTGAAGAATTTTGGG+GGG | - | chr4_1:46904056-46904075 | Msa0551110:intron | 30.0% |
| CATATGAGAACAAAGAATTG+TGG | - | chr4_1:46904127-46904146 | Msa0551110:CDS | 30.0% | |
| AAGAGTTATGTTAGGAAGAA+AGG | - | chr4_1:46904228-46904247 | Msa0551110:CDS | 30.0% | |
| !! | TTGTAGCTGATTTTAAATCC+AGG | - | chr4_1:46904313-46904332 | Msa0551110:CDS | 30.0% |
| GTGAAAGAAGAGATTATGAA+AGG | - | chr4_1:46904420-46904439 | Msa0551110:CDS | 30.0% | |
| ACAAAAAAAATATGGGAGCA+TGG | + | chr4_1:46904600-46904619 | None:intergenic | 30.0% | |
| !! | AATGTTTGATTTTGTTGCGT+TGG | - | chr4_1:46904652-46904671 | Msa0551110:CDS | 30.0% |
| CGAAGTAGATTCTAAATTGA+TGG | - | chr4_1:46904719-46904738 | Msa0551110:CDS | 30.0% | |
| AAGAATACTCAAGGGAATAC+AGG | - | chr4_1:46902685-46902704 | Msa0551110:CDS | 35.0% | |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr4_1:46902766-46902785 | Msa0551110:CDS | 35.0% |
| GATGAAAGTCAAAGTGATGA+AGG | - | chr4_1:46902811-46902830 | Msa0551110:CDS | 35.0% | |
| AGTGAAGGTGATGAAAATGA+AGG | - | chr4_1:46902862-46902881 | Msa0551110:CDS | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr4_1:46902892-46902911 | Msa0551110:CDS | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | chr4_1:46903004-46903023 | Msa0551110:CDS | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr4_1:46903011-46903030 | Msa0551110:CDS | 35.0% | |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr4_1:46903082-46903101 | Msa0551110:CDS | 35.0% |
| CTGTTAGGAAGAGTGATATT+AGG | - | chr4_1:46903097-46903116 | Msa0551110:CDS | 35.0% | |
| GATATTAGGCGCAATGTTAA+CGG | - | chr4_1:46903111-46903130 | Msa0551110:CDS | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | - | chr4_1:46903127-46903146 | Msa0551110:CDS | 35.0% | |
| AGTATGTATGCAACAAGCAA+AGG | - | chr4_1:46903151-46903170 | Msa0551110:CDS | 35.0% | |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr4_1:46903277-46903296 | None:intergenic | 35.0% |
| TGCATTTACACCCTGTTTAT+CGG | - | chr4_1:46903346-46903365 | Msa0551110:CDS | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | chr4_1:46903431-46903450 | Msa0551110:CDS | 35.0% |
| ! | ATGTGTGCTGTTATTAAGGA+TGG | - | chr4_1:46903522-46903541 | Msa0551110:CDS | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | chr4_1:46903604-46903623 | None:intergenic | 35.0% | |
| !! | AAATGTCTATTTTGGGCAGA+TGG | - | chr4_1:46903639-46903658 | Msa0551110:intron | 35.0% |
| !! | AGGTCAGATTATTTCTGCTT+TGG | - | chr4_1:46903669-46903688 | Msa0551110:intron | 35.0% |
| !! | ATTTTGTGCTGCATTGGTAA+TGG | - | chr4_1:46903788-46903807 | Msa0551110:CDS | 35.0% |
| ! | CCATCTATTACAACTGCTTT+TGG | + | chr4_1:46903880-46903899 | None:intergenic | 35.0% |
| CCAAAAGCAGTTGTAATAGA+TGG | - | chr4_1:46903877-46903896 | Msa0551110:CDS | 35.0% | |
| !!! | TCATATGTTTTGGTAACCCA+TGG | + | chr4_1:46904114-46904133 | None:intergenic | 35.0% |
| !! | AATTTTGATGAGGCAATGAG+AGG | - | chr4_1:46904273-46904292 | Msa0551110:CDS | 35.0% |
| GTGAAGGAAAAAGAAGTGAA+TGG | - | chr4_1:46904456-46904475 | Msa0551110:CDS | 35.0% | |
| GAAGCTGACAAAATATCTTG+AGG | - | chr4_1:46904494-46904513 | Msa0551110:CDS | 35.0% | |
| CTGACAAAATATCTTGAGGA+AGG | - | chr4_1:46904498-46904517 | Msa0551110:CDS | 35.0% | |
| !! | GAAGATTGGTTTCTTGAATG+TGG | - | chr4_1:46904686-46904705 | Msa0551110:CDS | 35.0% |
| ! | TTCTTGAATGTGGACTATTG+TGG | - | chr4_1:46904696-46904715 | Msa0551110:CDS | 35.0% |
| CAGTAACAATTGGAACATCA+GGG | + | chr4_1:46904869-46904888 | None:intergenic | 35.0% | |
| GTTGAGTTTCCAGTAACAAT+TGG | + | chr4_1:46904879-46904898 | None:intergenic | 35.0% | |
| TGTTACTGGAAACTCAACAA+TGG | - | chr4_1:46904881-46904900 | Msa0551110:CDS | 35.0% | |
| TGCTCCAAAGAAGAAGAAAA+AGG | - | chr4_1:46904941-46904960 | Msa0551110:CDS | 35.0% | |
| GTAGAACCGTAATCATGTTC+CGG | + | chr4_1:46902526-46902545 | None:intergenic | 40.0% | |
| TGATTACGGTTCTACGTATG+TGG | - | chr4_1:46902531-46902550 | Msa0551110:CDS | 40.0% | |
| TATTCGATCATTGTTGGGAG+TGG | - | chr4_1:46902571-46902590 | Msa0551110:CDS | 40.0% | |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr4_1:46902652-46902671 | Msa0551110:CDS | 40.0% |
| GATGAGTGGTATGATGAAAC+TGG | - | chr4_1:46902709-46902728 | Msa0551110:CDS | 40.0% | |
| GGAGACAATGAAAGTGATGA+TGG | - | chr4_1:46902730-46902749 | Msa0551110:CDS | 40.0% | |
| !! | GACAATGAAAGTGATGATGG+TGG | - | chr4_1:46902733-46902752 | Msa0551110:CDS | 40.0% |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr4_1:46902757-46902776 | Msa0551110:CDS | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr4_1:46902778-46902797 | Msa0551110:CDS | 40.0% | |
| GGTGATGAAAATGAAGGTCA+TGG | - | chr4_1:46902868-46902887 | Msa0551110:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+TGG | - | chr4_1:46902907-46902926 | Msa0551110:CDS | 40.0% | |
| GCTGAAGATGATGTAGTTGT+TGG | - | chr4_1:46902958-46902977 | Msa0551110:CDS | 40.0% | |
| AGATGATGTAGTTGTTGGTG+AGG | - | chr4_1:46902963-46902982 | Msa0551110:CDS | 40.0% | |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr4_1:46902969-46902988 | Msa0551110:CDS | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr4_1:46902974-46902993 | Msa0551110:CDS | 40.0% |
| !! | TTTTGGGTCTGTAGTGAACA+CGG | + | chr4_1:46903260-46903279 | None:intergenic | 40.0% |
| TGTTCACTACAGACCCAAAA+AGG | - | chr4_1:46903260-46903279 | Msa0551110:CDS | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | - | chr4_1:46903261-46903280 | Msa0551110:CDS | 40.0% | |
| !! | TGTAAATGCACAGCATTGGT+TGG | + | chr4_1:46903336-46903355 | None:intergenic | 40.0% |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | chr4_1:46903396-46903415 | Msa0551110:CDS | 40.0% |
| AAAGGAATGTGGATCAGTTG+AGG | + | chr4_1:46903586-46903605 | None:intergenic | 40.0% | |
| GAATATTCTGCCACTGATGA+CGG | - | chr4_1:46903609-46903628 | Msa0551110:intron | 40.0% | |
| GAACAAATACCACTATCCGT+TGG | - | chr4_1:46903725-46903744 | Msa0551110:CDS | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | chr4_1:46903737-46903756 | None:intergenic | 40.0% | |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | - | chr4_1:46903738-46903757 | Msa0551110:CDS | 40.0% |
| GCAGTTGTAATAGATGGTGA+TGG | - | chr4_1:46903883-46903902 | Msa0551110:CDS | 40.0% | |
| !! | TAGATGGTGATGGTTCTATG+AGG | - | chr4_1:46903893-46903912 | Msa0551110:CDS | 40.0% |
| !! | AGATGGTGATGGTTCTATGA+GGG | - | chr4_1:46903894-46903913 | Msa0551110:CDS | 40.0% |
| GCATCTGAACAAGAATGCTA+TGG | - | chr4_1:46903966-46903985 | Msa0551110:CDS | 40.0% | |
| ATTGCCTTGAGAACAATCCA+TGG | - | chr4_1:46904094-46904113 | Msa0551110:CDS | 40.0% | |
| TTGCCTTGAGAACAATCCAT+GGG | - | chr4_1:46904095-46904114 | Msa0551110:CDS | 40.0% | |
| ! | TAACCCATGGATTGTTCTCA+AGG | + | chr4_1:46904101-46904120 | None:intergenic | 40.0% |
| CGAGATTCAAATTTCCTGCA+CGG | + | chr4_1:46904570-46904589 | None:intergenic | 40.0% | |
| TGCAGGAAATTTGAATCTCG+AGG | - | chr4_1:46904570-46904589 | Msa0551110:CDS | 40.0% | |
| GCAGGAAATTTGAATCTCGA+GGG | - | chr4_1:46904571-46904590 | Msa0551110:CDS | 40.0% | |
| CAGGAAATTTGAATCTCGAG+GGG | - | chr4_1:46904572-46904591 | Msa0551110:CDS | 40.0% | |
| TTTGTTGCGTTGGACGAAAA+AGG | - | chr4_1:46904662-46904681 | Msa0551110:CDS | 40.0% | |
| TTGATGGAGATAGCTCGATA+TGG | - | chr4_1:46904735-46904754 | Msa0551110:CDS | 40.0% | |
| ! | AGCATACAAGCTACGCTTTT+TGG | + | chr4_1:46904802-46904821 | None:intergenic | 40.0% |
| ! | TAGCTTGTATGCTAATGTGC+TGG | - | chr4_1:46904809-46904828 | Msa0551110:CDS | 40.0% |
| GGATGACATACAAAAGCTTC+AGG | - | chr4_1:46904830-46904849 | Msa0551110:CDS | 40.0% | |
| CCAGTAACAATTGGAACATC+AGG | + | chr4_1:46904870-46904889 | None:intergenic | 40.0% | |
| CCTGATGTTCCAATTGTTAC+TGG | - | chr4_1:46904867-46904886 | Msa0551110:CDS | 40.0% | |
| ! | GGTGCCTTTTTCTTCTTCTT+TGG | + | chr4_1:46904948-46904967 | None:intergenic | 40.0% |
| GGTACACCGGAACATGATTA+CGG | - | chr4_1:46902517-46902536 | Msa0551110:CDS | 45.0% | |
| AAGGGAATACAGGTGATGAG+TGG | - | chr4_1:46902695-46902714 | Msa0551110:CDS | 45.0% | |
| !! | AGTGATGATGGTGGTTGTTC+TGG | - | chr4_1:46902742-46902761 | Msa0551110:CDS | 45.0% |
| GATGAAGGTGAACGTGATGA+AGG | - | chr4_1:46902826-46902845 | Msa0551110:CDS | 45.0% | |
| GGTGATGAAAGTGATGGTCA+TGG | - | chr4_1:46902913-46902932 | Msa0551110:CDS | 45.0% | |
| ! | AGTGATGGTCATGGTAGTGA+AGG | - | chr4_1:46902922-46902941 | Msa0551110:CDS | 45.0% |
| ACTTTGTACGAGTGAGACGT+CGG | + | chr4_1:46903224-46903243 | None:intergenic | 45.0% | |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr4_1:46903323-46903342 | None:intergenic | 45.0% |
| AGGGTGTAAATGCACAGCAT+TGG | + | chr4_1:46903340-46903359 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | chr4_1:46903622-46903641 | None:intergenic | 45.0% | |
| !! | TTATTTCTGCTTTGGCGACG+TGG | - | chr4_1:46903677-46903696 | Msa0551110:intron | 45.0% |
| CAGCCAGACAAAATCACCAA+CGG | + | chr4_1:46903744-46903763 | None:intergenic | 45.0% | |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr4_1:46903906-46903925 | Msa0551110:CDS | 45.0% | |
| !!! | AATTTTGGGGGGACTTGTTG+AGG | - | chr4_1:46904067-46904086 | Msa0551110:intron | 45.0% |
| !!! | ATTTTGGGGGGACTTGTTGA+GGG | - | chr4_1:46904068-46904087 | Msa0551110:intron | 45.0% |
| TACCTGCGTGACGATTTCTT+TGG | - | chr4_1:46904159-46904178 | Msa0551110:CDS | 45.0% | |
| CAAATGAGTTGTCAGCACAG+GGG | + | chr4_1:46904346-46904365 | None:intergenic | 45.0% | |
| GCAAATGAGTTGTCAGCACA+GGG | + | chr4_1:46904347-46904366 | None:intergenic | 45.0% | |
| TGCAAATGAGTTGTCAGCAC+AGG | + | chr4_1:46904348-46904367 | None:intergenic | 45.0% | |
| CGAGGCTGCTGAAATCTATA+CGG | - | chr4_1:46904380-46904399 | Msa0551110:CDS | 45.0% | |
| TGGACGAAAAAGGCGAAGAT+TGG | - | chr4_1:46904672-46904691 | Msa0551110:CDS | 45.0% | |
| TCGATCATTGTTGGGAGTGG+TGG | - | chr4_1:46902574-46902593 | Msa0551110:CDS | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr4_1:46902829-46902848 | Msa0551110:CDS | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr4_1:46902847-46902866 | Msa0551110:CDS | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr4_1:46903232-46903251 | Msa0551110:CDS | 50.0% |
| !! | TGCACAGCATTGGTTGGAGT+AGG | + | chr4_1:46903330-46903349 | None:intergenic | 50.0% |
| GGATACATGGTGGCTCAGAA+GGG | - | chr4_1:46903441-46903460 | Msa0551110:CDS | 50.0% | |
| TTCTTAGTGAACCCAGCACC+AGG | + | chr4_1:46903474-46903493 | None:intergenic | 50.0% | |
| TTTGGGCAGATGGCACAAGT+AGG | - | chr4_1:46903649-46903668 | Msa0551110:intron | 50.0% | |
| !!! | CGTTGGTGATTTTGTCTGGC+TGG | - | chr4_1:46903742-46903761 | Msa0551110:CDS | 50.0% |
| !! | TGGTGATGGTTCTATGAGGG+AGG | - | chr4_1:46903897-46903916 | Msa0551110:CDS | 50.0% |
| TATGAGGGAGGCGATAAAGG+CGG | - | chr4_1:46903909-46903928 | Msa0551110:CDS | 50.0% | |
| CATAGACGATGACGCGTACT+TGG | + | chr4_1:46903940-46903959 | None:intergenic | 50.0% | |
| CACCAAAGAAATCGTCACGC+AGG | + | chr4_1:46904164-46904183 | None:intergenic | 50.0% | |
| CTGCGTGACGATTTCTTTGG+TGG | - | chr4_1:46904162-46904181 | Msa0551110:CDS | 50.0% | |
| TTTGCATTGTCTTGAGCGCG+AGG | - | chr4_1:46904362-46904381 | Msa0551110:CDS | 50.0% | |
| ! | AGGTGTTGCACTGAGTGTGA+AGG | - | chr4_1:46904440-46904459 | Msa0551110:CDS | 50.0% |
| CCTTTGCACTTCACTGGCAA+TGG | + | chr4_1:46904921-46904940 | None:intergenic | 50.0% | |
| CCATTGCCAGTGAAGTGCAA+AGG | - | chr4_1:46904918-46904937 | Msa0551110:CDS | 50.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr4_1:46902832-46902851 | Msa0551110:CDS | 55.0% | |
| TAGTGAACACGGAGCCTAGC+TGG | + | chr4_1:46903249-46903268 | None:intergenic | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr4_1:46903440-46903459 | Msa0551110:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr4_1:46903444-46903463 | Msa0551110:CDS | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr4_1:46903453-46903472 | Msa0551110:CDS | 55.0% | |
| AAGGGTGGATATCCTGGTGC+TGG | - | chr4_1:46903459-46903478 | Msa0551110:CDS | 55.0% | |
| AGGGTGGATATCCTGGTGCT+GGG | - | chr4_1:46903460-46903479 | Msa0551110:CDS | 55.0% | |
| CAGCACAGGGGATGAAAACC+TGG | + | chr4_1:46904334-46904353 | None:intergenic | 55.0% | |
| CAGCAATTCAGTGTCCGTGC+AGG | - | chr4_1:46904553-46904572 | Msa0551110:CDS | 55.0% | |
| CTGGCAATGGATCACGTACG+TGG | + | chr4_1:46904908-46904927 | None:intergenic | 55.0% | |
| ! | GGAGCACCTTTGCACTTCAC+TGG | + | chr4_1:46904927-46904946 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 46902484 | 46904977 | 46902484 | ID=Msa0551110;Name=Msa0551110 |
| chr4_1 | mRNA | 46902484 | 46904977 | 46902484 | ID=Msa0551110-mRNA-1;Parent=Msa0551110;Name=Msa0551110-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|3|0|768 |
| chr4_1 | exon | 46904081 | 46904977 | 46904081 | ID=Msa0551110-mRNA-1:exon:12649;Parent=Msa0551110-mRNA-1 |
| chr4_1 | exon | 46903715 | 46904002 | 46903715 | ID=Msa0551110-mRNA-1:exon:12648;Parent=Msa0551110-mRNA-1 |
| chr4_1 | exon | 46902484 | 46903605 | 46902484 | ID=Msa0551110-mRNA-1:exon:12647;Parent=Msa0551110-mRNA-1 |
| chr4_1 | CDS | 46904081 | 46904977 | 46904081 | ID=Msa0551110-mRNA-1:cds;Parent=Msa0551110-mRNA-1 |
| chr4_1 | CDS | 46903715 | 46904002 | 46903715 | ID=Msa0551110-mRNA-1:cds;Parent=Msa0551110-mRNA-1 |
| chr4_1 | CDS | 46902484 | 46903605 | 46902484 | ID=Msa0551110-mRNA-1:cds;Parent=Msa0551110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
