Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551850 | KEH26293.1 | 97.872 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 1.27e-130 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551850 | sp|Q9SZL8|FRS5_ARATH | 31.333 | 150 | 102 | 1 | 190 | 339 | 420 | 568 | 1.68e-17 | 88.2 |
| Msa0551850 | sp|Q9SZL8|FRS5_ARATH | 29.670 | 182 | 123 | 3 | 2 | 183 | 62 | 238 | 2.70e-17 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551850 | A0A072UB45 | 97.872 | 188 | 4 | 0 | 1 | 188 | 1 | 188 | 6.05e-131 | 389 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0551850 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551850 | MtrunA17_Chr8g0363841 | 70.588 | 187 | 51 | 1 | 1 | 187 | 1 | 183 | 9.56e-89 | 282 |
| Msa0551850 | MtrunA17_Chr8g0363841 | 66.667 | 153 | 51 | 0 | 189 | 341 | 360 | 512 | 3.28e-64 | 218 |
| Msa0551850 | MtrunA17_Chr5g0448761 | 30.464 | 151 | 104 | 1 | 190 | 340 | 411 | 560 | 1.79e-18 | 87.8 |
| Msa0551850 | MtrunA17_Chr5g0448761 | 32.520 | 123 | 82 | 1 | 62 | 183 | 104 | 226 | 2.62e-15 | 78.2 |
| Msa0551850 | MtrunA17_Chr1g0202341 | 35.065 | 154 | 95 | 3 | 193 | 343 | 398 | 549 | 4.74e-18 | 86.7 |
| Msa0551850 | MtrunA17_Chr7g0258861 | 28.655 | 171 | 114 | 3 | 19 | 187 | 12 | 176 | 1.12e-15 | 77.4 |
| Msa0551850 | MtrunA17_Chr5g0440451 | 31.176 | 170 | 109 | 4 | 168 | 333 | 366 | 531 | 3.61e-15 | 77.8 |
| Msa0551850 | MtrunA17_Chr6g0458391 | 27.179 | 195 | 130 | 4 | 135 | 321 | 492 | 682 | 7.63e-15 | 76.6 |
| Msa0551850 | MtrunA17_Chr1g0203721 | 26.316 | 190 | 129 | 6 | 137 | 319 | 353 | 538 | 8.30e-15 | 76.6 |
| Msa0551850 | MtrunA17_Chr2g0287651 | 28.025 | 157 | 109 | 3 | 27 | 182 | 85 | 238 | 8.72e-15 | 76.6 |
| Msa0551850 | MtrunA17_Chr2g0324011 | 30.729 | 192 | 110 | 7 | 13 | 192 | 9 | 189 | 5.58e-14 | 73.9 |
| Msa0551850 | MtrunA17_Chr2g0324011 | 27.564 | 156 | 109 | 1 | 168 | 319 | 328 | 483 | 4.45e-13 | 70.9 |
| Msa0551850 | MtrunA17_Chr5g0441581 | 26.712 | 146 | 106 | 1 | 195 | 340 | 369 | 513 | 1.35e-13 | 72.8 |
| Msa0551850 | MtrunA17_Chr5g0448511 | 28.395 | 162 | 111 | 3 | 193 | 354 | 186 | 342 | 1.51e-13 | 72.4 |
| Msa0551850 | MtrunA17_Chr1g0207551 | 27.684 | 177 | 117 | 4 | 170 | 339 | 352 | 524 | 4.11e-13 | 71.2 |
| Msa0551850 | MtrunA17_Chr2g0294841 | 28.652 | 178 | 122 | 3 | 18 | 190 | 46 | 223 | 6.05e-13 | 70.9 |
| Msa0551850 | MtrunA17_Chr2g0291581 | 29.487 | 156 | 92 | 3 | 1 | 146 | 45 | 192 | 2.31e-12 | 68.9 |
| Msa0551850 | MtrunA17_Chr2g0296781 | 28.000 | 150 | 89 | 2 | 179 | 312 | 328 | 474 | 4.46e-12 | 68.2 |
| Msa0551850 | MtrunA17_Chr3g0118611 | 30.469 | 128 | 86 | 2 | 193 | 320 | 292 | 416 | 7.52e-12 | 67.4 |
| Msa0551850 | MtrunA17_Chr2g0329421 | 31.579 | 114 | 70 | 3 | 11 | 124 | 24 | 129 | 7.63e-12 | 64.3 |
| Msa0551850 | MtrunA17_Chr3g0082121 | 28.814 | 118 | 84 | 0 | 194 | 311 | 384 | 501 | 9.51e-12 | 67.0 |
| Msa0551850 | MtrunA17_Chr6g0477261 | 28.000 | 150 | 89 | 2 | 179 | 312 | 217 | 363 | 2.12e-11 | 65.9 |
| Msa0551850 | MtrunA17_Chr2g0276841 | 25.414 | 181 | 129 | 3 | 18 | 194 | 71 | 249 | 3.48e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551850 | AT4G38180.1 | 31.333 | 150 | 102 | 1 | 190 | 339 | 420 | 568 | 1.71e-18 | 88.2 |
| Msa0551850 | AT4G38180.1 | 29.670 | 182 | 123 | 3 | 2 | 183 | 62 | 238 | 2.74e-18 | 87.8 |
| Msa0551850 | AT2G27110.2 | 29.050 | 179 | 116 | 5 | 157 | 331 | 333 | 504 | 9.13e-14 | 73.9 |
| Msa0551850 | AT2G27110.1 | 29.050 | 179 | 116 | 5 | 157 | 331 | 333 | 504 | 9.13e-14 | 73.9 |
| Msa0551850 | AT4G38170.1 | 23.741 | 139 | 105 | 1 | 182 | 320 | 177 | 314 | 1.25e-13 | 73.2 |
| Msa0551850 | AT2G27110.3 | 29.050 | 179 | 116 | 5 | 157 | 331 | 188 | 359 | 1.32e-13 | 73.2 |
| Msa0551850 | AT4G19990.1 | 29.944 | 177 | 116 | 5 | 158 | 330 | 254 | 426 | 7.97e-12 | 67.8 |
| Msa0551850 | AT4G19990.6 | 30.000 | 180 | 118 | 5 | 158 | 333 | 311 | 486 | 8.11e-12 | 67.8 |
| Msa0551850 | AT4G19990.2 | 30.000 | 180 | 118 | 5 | 158 | 333 | 311 | 486 | 8.11e-12 | 67.8 |
| Msa0551850 | AT4G19990.5 | 29.944 | 177 | 116 | 5 | 158 | 330 | 311 | 483 | 8.21e-12 | 67.8 |
| Msa0551850 | AT4G19990.3 | 29.944 | 177 | 116 | 5 | 158 | 330 | 311 | 483 | 8.22e-12 | 67.8 |
| Msa0551850 | AT4G19990.4 | 29.944 | 177 | 116 | 5 | 158 | 330 | 311 | 483 | 8.22e-12 | 67.8 |
| Msa0551850 | AT1G10240.2 | 28.804 | 184 | 119 | 6 | 18 | 194 | 49 | 227 | 8.84e-12 | 67.4 |
| Msa0551850 | AT1G10240.1 | 28.804 | 184 | 119 | 6 | 18 | 194 | 49 | 227 | 8.84e-12 | 67.4 |
| Msa0551850 | AT4G19990.7 | 29.944 | 177 | 116 | 5 | 158 | 330 | 325 | 497 | 8.89e-12 | 67.4 |
| Msa0551850 | AT4G15090.1 | 27.381 | 168 | 116 | 3 | 175 | 338 | 377 | 542 | 1.21e-11 | 67.0 |
| Msa0551850 | AT4G15090.5 | 27.381 | 168 | 116 | 3 | 175 | 338 | 377 | 542 | 1.21e-11 | 67.0 |
| Msa0551850 | AT4G15090.3 | 27.381 | 168 | 116 | 3 | 175 | 338 | 377 | 542 | 1.21e-11 | 67.0 |
| Msa0551850 | AT4G15090.2 | 27.381 | 168 | 116 | 3 | 175 | 338 | 377 | 542 | 1.21e-11 | 67.0 |
| Msa0551850 | AT4G15090.4 | 27.381 | 168 | 116 | 3 | 175 | 338 | 377 | 542 | 1.21e-11 | 67.0 |
| Msa0551850 | AT5G28530.4 | 27.647 | 170 | 115 | 4 | 18 | 183 | 56 | 221 | 1.52e-11 | 66.6 |
| Msa0551850 | AT5G28530.5 | 27.647 | 170 | 115 | 4 | 18 | 183 | 56 | 221 | 1.54e-11 | 66.6 |
| Msa0551850 | AT5G28530.1 | 27.647 | 170 | 115 | 4 | 18 | 183 | 56 | 221 | 1.98e-11 | 66.2 |
| Msa0551850 | AT5G28530.3 | 27.647 | 170 | 115 | 4 | 18 | 183 | 56 | 221 | 2.09e-11 | 66.2 |
| Msa0551850 | AT5G28530.2 | 27.647 | 170 | 115 | 4 | 18 | 183 | 56 | 221 | 2.09e-11 | 66.2 |
| Msa0551850 | AT1G76320.1 | 25.676 | 148 | 109 | 1 | 191 | 338 | 334 | 480 | 6.23e-11 | 64.7 |
| Msa0551850 | AT1G76320.4 | 25.676 | 148 | 109 | 1 | 191 | 338 | 334 | 480 | 6.23e-11 | 64.7 |
| Msa0551850 | AT1G76320.2 | 25.676 | 148 | 109 | 1 | 191 | 338 | 334 | 480 | 6.51e-11 | 64.7 |
| Msa0551850 | AT1G76320.3 | 25.676 | 148 | 109 | 1 | 191 | 338 | 334 | 480 | 6.75e-11 | 64.7 |
| Msa0551850 | AT3G59470.3 | 30.088 | 113 | 71 | 3 | 12 | 124 | 68 | 172 | 7.16e-11 | 62.8 |
| Msa0551850 | AT3G59470.1 | 30.088 | 113 | 71 | 3 | 12 | 124 | 68 | 172 | 7.16e-11 | 62.8 |
| Msa0551850 | AT3G59470.2 | 30.088 | 113 | 71 | 3 | 12 | 124 | 80 | 184 | 8.01e-11 | 62.8 |
Find 70 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATGTTTGGAGTTATTT+AGG | 0.178667 | 4_1:+48066251 | Msa0551850:CDS |
| GAAGAGAGAAAGACAATTAA+TGG | 0.202619 | 4_1:+48069365 | Msa0551850:CDS |
| AGGGTTATCATTCCTCAAAT+TGG | 0.230210 | 4_1:+48068220 | Msa0551850:intron |
| TGTATAAAATTCATCATAAA+TGG | 0.250035 | 4_1:+48066959 | Msa0551850:CDS |
| CCATCTTGAAGCCATGTTCT+TGG | 0.280191 | 4_1:-48065884 | None:intergenic |
| CTTTCTCTCTTCTAACTTTG+TGG | 0.280636 | 4_1:-48069354 | None:intergenic |
| CACATGTAACTCATTGATTC+AGG | 0.282301 | 4_1:+48068293 | Msa0551850:CDS |
| GGGTTATCATTCCTCAAATT+GGG | 0.312307 | 4_1:+48068221 | Msa0551850:intron |
| GCGAATTACTAAGTTGATAA+TGG | 0.317295 | 4_1:+48066112 | Msa0551850:CDS |
| ATTGTTCTTAAACCCTTGTT+TGG | 0.337062 | 4_1:-48065985 | None:intergenic |
| ACTAAGATGTTACAAGGAAT+TGG | 0.345022 | 4_1:+48068270 | Msa0551850:CDS |
| TCACCTACGATTTCTCCTTC+TGG | 0.371892 | 4_1:-48066011 | None:intergenic |
| GTATGAAAGTTACTAATGTT+TGG | 0.386893 | 4_1:+48066240 | Msa0551850:CDS |
| AGACTTTATGAGACCTCCTT+TGG | 0.388927 | 4_1:-48066204 | None:intergenic |
| AAGTCCATCGCGCGCTGCAC+TGG | 0.393120 | 4_1:-48069278 | None:intergenic |
| AGGAGGTCTCATAAAGTCTA+TGG | 0.403748 | 4_1:+48066208 | Msa0551850:CDS |
| GAAGTACTTCTAAAGACATT+GGG | 0.403994 | 4_1:+48067283 | Msa0551850:CDS |
| TAACATCTTAGTAAATGAAA+TGG | 0.407933 | 4_1:-48068259 | None:intergenic |
| ACTTAGACTGGTTGCTGCTC+CGG | 0.416105 | 4_1:-48067070 | None:intergenic |
| AATGAGTATCTTGCTGGAAC+TGG | 0.425528 | 4_1:+48067258 | Msa0551850:CDS |
| CTTATCAAAGGGCTGATTCA+AGG | 0.444079 | 4_1:+48066039 | Msa0551850:CDS |
| CGATTTAATGTTAGCAAGGA+TGG | 0.456458 | 4_1:+48066083 | Msa0551850:CDS |
| CTCACTGATATTTATGATGC+GGG | 0.456755 | 4_1:-48067181 | None:intergenic |
| GATTCAAAAGAAGAGTTTGA+AGG | 0.459181 | 4_1:+48066877 | Msa0551850:CDS |
| TATTTAGGAGAAGAGGTTGG+TGG | 0.461595 | 4_1:+48066266 | Msa0551850:CDS |
| AGTGTGTTAAGTGCGATTGC+CGG | 0.478839 | 4_1:+48067051 | Msa0551850:CDS |
| AGTATTTAAACCCCAATTTG+AGG | 0.480130 | 4_1:-48068232 | None:intergenic |
| TGATGCGGGGAGGCATACTT+TGG | 0.480707 | 4_1:-48067167 | None:intergenic |
| GTTGGTGGATTTGATAAGCT+TGG | 0.492644 | 4_1:+48066281 | Msa0551850:CDS |
| AAGAAGAGTTTGAAGGCACT+TGG | 0.500098 | 4_1:+48066884 | Msa0551850:CDS |
| CAAGAACATGGCTTCAAGAT+GGG | 0.500638 | 4_1:+48065885 | Msa0551850:CDS |
| ACAAGCTTCAAAATCACAAA+TGG | 0.503549 | 4_1:+48066926 | Msa0551850:CDS |
| CCAAGAACATGGCTTCAAGA+TGG | 0.507821 | 4_1:+48065884 | Msa0551850:CDS |
| AGTTATTTAGGAGAAGAGGT+TGG | 0.508257 | 4_1:+48066263 | Msa0551850:CDS |
| GGAAGTACTTCTAAAGACAT+TGG | 0.522331 | 4_1:+48067282 | Msa0551850:CDS |
| TCATTTACTAAGATGTTACA+AGG | 0.524417 | 4_1:+48068264 | Msa0551850:CDS |
| TTGGAGTTATTTAGGAGAAG+AGG | 0.526196 | 4_1:+48066259 | Msa0551850:CDS |
| GAGTATCTTGCTGGAACTGG+TGG | 0.526825 | 4_1:+48067261 | Msa0551850:CDS |
| GATTATTATTGTTCCAAACA+AGG | 0.530481 | 4_1:+48065972 | Msa0551850:CDS |
| ATGTTAGCAAGGATGGAGAA+TGG | 0.532233 | 4_1:+48066090 | Msa0551850:CDS |
| CGAGCCAGTGCAGCGCGCGA+TGG | 0.532817 | 4_1:+48069274 | Msa0551850:CDS |
| TAGGTGAAGTTGCTTATCAA+AGG | 0.533461 | 4_1:+48066027 | Msa0551850:CDS |
| AATGGATCACAACCATGCTT+TGG | 0.538091 | 4_1:+48066130 | Msa0551850:CDS |
| TAATAAGAAATGACTTAGAC+TGG | 0.538323 | 4_1:-48067082 | None:intergenic |
| ATTATTATTGTTCCAAACAA+GGG | 0.540953 | 4_1:+48065973 | Msa0551850:CDS |
| AGGTGAAGTTGCTTATCAAA+GGG | 0.546039 | 4_1:+48066028 | Msa0551850:CDS |
| TGCAGCGCGCGATGGACTTG+AGG | 0.548097 | 4_1:+48069282 | Msa0551850:CDS |
| GCGACAATTAGAGACTGAAA+AGG | 0.558235 | 4_1:+48067131 | Msa0551850:CDS |
| AAGGACAAATTGTAAAGCAA+TGG | 0.564077 | 4_1:+48066058 | Msa0551850:CDS |
| ATAAAGTCTATGGTGAATGC+TGG | 0.565519 | 4_1:+48066218 | Msa0551850:CDS |
| GCTCGAGCGGCACCAAAGCA+TGG | 0.565748 | 4_1:-48066142 | None:intergenic |
| GGTTATCATTCCTCAAATTG+GGG | 0.572895 | 4_1:+48068222 | Msa0551850:CDS |
| TGGACTTGAGGTCGAAGTAG+TGG | 0.572952 | 4_1:+48069294 | Msa0551850:CDS |
| TGGTCAAGTTGTGCATAGCA+AGG | 0.581013 | 4_1:+48065842 | Msa0551850:CDS |
| GGTGCGATTTAATGTTAGCA+AGG | 0.593147 | 4_1:+48066079 | Msa0551850:CDS |
| ATCTTAGTAAATGAAATGGA+TGG | 0.594963 | 4_1:-48068255 | None:intergenic |
| AGCACAGCAAAGTTCGCAGT+CGG | 0.601570 | 4_1:+48069318 | Msa0551850:CDS |
| TCTCACTGATATTTATGATG+CGG | 0.607441 | 4_1:-48067182 | None:intergenic |
| AGTTCGCAGTCGGATATCGC+AGG | 0.611469 | 4_1:+48069328 | Msa0551850:CDS |
| TTTAAGAACAATGAACCAGA+AGG | 0.621796 | 4_1:+48065996 | Msa0551850:CDS |
| ATGGAGCACTGCATATAGCA+AGG | 0.629512 | 4_1:+48066978 | Msa0551850:CDS |
| GAACCAGAAGGAGAAATCGT+AGG | 0.643994 | 4_1:+48066008 | Msa0551850:CDS |
| AGAAAAGTATCAGAAACCAA+AGG | 0.645801 | 4_1:+48066188 | Msa0551850:CDS |
| TCGCAGTCGGATATCGCAGG+TGG | 0.668835 | 4_1:+48069331 | Msa0551850:CDS |
| TATAACTTATACCAAGAACA+TGG | 0.669118 | 4_1:+48065873 | Msa0551850:CDS |
| AAGTACTTCTAAAGACATTG+GGG | 0.673250 | 4_1:+48067284 | Msa0551850:CDS |
| AATAAATGTCTTTGCTCGAG+CGG | 0.678247 | 4_1:-48066155 | None:intergenic |
| CTGATATTTATGATGCGGGG+AGG | 0.680172 | 4_1:-48067177 | None:intergenic |
| AAAGTATCAGAAACCAAAGG+AGG | 0.690747 | 4_1:+48066191 | Msa0551850:CDS |
| TCACTGATATTTATGATGCG+GGG | 0.700675 | 4_1:-48067180 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTACATAATTTAATA+GGG | + | chr4_1:48068201-48068220 | Msa0551850:intron | 10.0% |
| !! | GAAAAGAGTAAATTAATTAT+AGG | + | chr4_1:48066341-48066360 | Msa0551850:intron | 15.0% |
| !! | TGTATAAAATTCATCATAAA+TGG | + | chr4_1:48066959-48066978 | Msa0551850:CDS | 15.0% |
| !!! | GTTTTTTTATAATCTAGTTT+TGG | + | chr4_1:48067638-48067657 | Msa0551850:intron | 15.0% |
| !! | CTATTAAATTATGTAAAAGA+AGG | - | chr4_1:48068202-48068221 | None:intergenic | 15.0% |
| !!! | CTTCTTTTACATAATTTAAT+AGG | + | chr4_1:48068200-48068219 | Msa0551850:intron | 15.0% |
| !! | ATTATTATTGTTCCAAACAA+GGG | + | chr4_1:48065973-48065992 | Msa0551850:CDS | 20.0% |
| !! | AAGAGTAAATTAATTATAGG+TGG | + | chr4_1:48066344-48066363 | Msa0551850:intron | 20.0% |
| !! | TCAAATCATATGTATTAGTA+CGG | - | chr4_1:48066543-48066562 | None:intergenic | 20.0% |
| !!! | TGATCTGTAAAAAATGTTTT+TGG | - | chr4_1:48066700-48066719 | None:intergenic | 20.0% |
| !! | CTTATTAGCATTTGAAAAAA+TGG | + | chr4_1:48067098-48067117 | Msa0551850:CDS | 20.0% |
| !! | AAAAAATTTCACTCAAAATG+AGG | + | chr4_1:48067779-48067798 | Msa0551850:intron | 20.0% |
| !! | GATAAATTATAAACCTCTAA+AGG | - | chr4_1:48068128-48068147 | None:intergenic | 20.0% |
| !! | ACTTAAAAGTTATCAAGAAA+TGG | - | chr4_1:48068152-48068171 | None:intergenic | 20.0% |
| !! | TAACATCTTAGTAAATGAAA+TGG | - | chr4_1:48068262-48068281 | None:intergenic | 20.0% |
| !!! | AACAAGCTAAATCTATATTT+TGG | + | chr4_1:48068723-48068742 | Msa0551850:intron | 20.0% |
| !! | AATAAACAACAAAAGCAATA+AGG | + | chr4_1:48068947-48068966 | Msa0551850:intron | 20.0% |
| !! | ATAAACAACAAAAGCAATAA+GGG | + | chr4_1:48068948-48068967 | Msa0551850:intron | 20.0% |
| !! | AATCTTACAATTACAAGAAA+TGG | + | chr4_1:48069051-48069070 | Msa0551850:intron | 20.0% |
| !! | ATCTTACAATTACAAGAAAT+GGG | + | chr4_1:48069052-48069071 | Msa0551850:intron | 20.0% |
| !! | AATATGGTTGAGAATTAAAT+TGG | - | chr4_1:48069120-48069139 | None:intergenic | 20.0% |
| !!! | GGTTATGATTATTTTCAATA+TGG | - | chr4_1:48069136-48069155 | None:intergenic | 20.0% |
| ! | TATAACTTATACCAAGAACA+TGG | + | chr4_1:48065873-48065892 | Msa0551850:CDS | 25.0% |
| ! | GATTATTATTGTTCCAAACA+AGG | + | chr4_1:48065972-48065991 | Msa0551850:CDS | 25.0% |
| ! | GTATGAAAGTTACTAATGTT+TGG | + | chr4_1:48066240-48066259 | Msa0551850:CDS | 25.0% |
| !! | ACTAATGTTTGGAGTTATTT+AGG | + | chr4_1:48066251-48066270 | Msa0551850:CDS | 25.0% |
| ! | CAAGTGATTGATTAAAGATT+GGG | - | chr4_1:48066375-48066394 | None:intergenic | 25.0% |
| ! | CAAAACAATCATAATCAACT+TGG | - | chr4_1:48066492-48066511 | None:intergenic | 25.0% |
| !!! | CAAGTTGATTATGATTGTTT+TGG | + | chr4_1:48066490-48066509 | Msa0551850:intron | 25.0% |
| !! | AAACTTCTGTTTCTTTCAAT+TGG | + | chr4_1:48066635-48066654 | Msa0551850:intron | 25.0% |
| !!! | TTGGCTATTTAAAGTGTTTT+TGG | + | chr4_1:48066654-48066673 | Msa0551850:intron | 25.0% |
| !!! | ACATTTTTTACAGATCAAGA+TGG | + | chr4_1:48066703-48066722 | Msa0551850:intron | 25.0% |
| ! | ATATATGCCATAAGCATAAA+CGG | - | chr4_1:48066774-48066793 | None:intergenic | 25.0% |
| !!! | AAAAGTTTCATGGTTTGTTT+TGG | + | chr4_1:48066836-48066855 | Msa0551850:intron | 25.0% |
| ! | TAATAAGAAATGACTTAGAC+TGG | - | chr4_1:48067085-48067104 | None:intergenic | 25.0% |
| ! | TTGAAAAAATGGTAAACAAG+TGG | + | chr4_1:48067109-48067128 | Msa0551850:CDS | 25.0% |
| ! | AATACCACATGTTTCTTATT+AGG | - | chr4_1:48067354-48067373 | None:intergenic | 25.0% |
| !!! | TTGAGTGAAATTTTTTTCAC+TGG | - | chr4_1:48067775-48067794 | None:intergenic | 25.0% |
| ! | ATGTTATTGAGAACATTAGA+AGG | - | chr4_1:48068065-48068084 | None:intergenic | 25.0% |
| ! | TTCTAATGTTCTCAATAACA+TGG | + | chr4_1:48068064-48068083 | Msa0551850:intron | 25.0% |
| ! | AGTTATGAATGATTTCATTG+TGG | + | chr4_1:48068169-48068188 | Msa0551850:intron | 25.0% |
| ! | ATCTTAGTAAATGAAATGGA+TGG | - | chr4_1:48068258-48068277 | None:intergenic | 25.0% |
| ! | TCATTTACTAAGATGTTACA+AGG | + | chr4_1:48068264-48068283 | Msa0551850:CDS | 25.0% |
| !! | AGAAGATTATAGCCTAATTT+TGG | + | chr4_1:48068498-48068517 | Msa0551850:intron | 25.0% |
| !! | GAAGATTATAGCCTAATTTT+GGG | + | chr4_1:48068499-48068518 | Msa0551850:intron | 25.0% |
| !! | CTTATGTTTAGCATTTCTTT+TGG | + | chr4_1:48068620-48068639 | Msa0551850:intron | 25.0% |
| !!! | GTACCAGAATGTTTAATTTT+GGG | - | chr4_1:48068897-48068916 | None:intergenic | 25.0% |
| !!! | TGTACCAGAATGTTTAATTT+TGG | - | chr4_1:48068898-48068917 | None:intergenic | 25.0% |
| !!! | AGCATTTTGTTTTATCATTG+TGG | - | chr4_1:48068976-48068995 | None:intergenic | 25.0% |
| TGACCAAGAAAAATATCTCT+GGG | - | chr4_1:48065828-48065847 | None:intergenic | 30.0% | |
| TTGACCAAGAAAAATATCTC+TGG | - | chr4_1:48065829-48065848 | None:intergenic | 30.0% | |
| ATTGTTCTTAAACCCTTGTT+TGG | - | chr4_1:48065988-48066007 | None:intergenic | 30.0% | |
| TTTAAGAACAATGAACCAGA+AGG | + | chr4_1:48065996-48066015 | Msa0551850:CDS | 30.0% | |
| AAGGACAAATTGTAAAGCAA+TGG | + | chr4_1:48066058-48066077 | Msa0551850:CDS | 30.0% | |
| !! | GCGAATTACTAAGTTGATAA+TGG | + | chr4_1:48066112-48066131 | Msa0551850:CDS | 30.0% |
| !! | AGAAAAGTATCAGAAACCAA+AGG | + | chr4_1:48066188-48066207 | Msa0551850:CDS | 30.0% |
| GCAAGTGATTGATTAAAGAT+TGG | - | chr4_1:48066376-48066395 | None:intergenic | 30.0% | |
| ATATGTATTAGTACGGTAAG+TGG | - | chr4_1:48066536-48066555 | None:intergenic | 30.0% | |
| TTAAGATCACCAAAATGAGA+AGG | - | chr4_1:48066808-48066827 | None:intergenic | 30.0% | |
| AACTCTGATCAAAAGTTTCA+TGG | + | chr4_1:48066826-48066845 | Msa0551850:intron | 30.0% | |
| !!! | TTGTTTTGGAAATGCATGTT+AGG | + | chr4_1:48066850-48066869 | Msa0551850:intron | 30.0% |
| GATTCAAAAGAAGAGTTTGA+AGG | + | chr4_1:48066877-48066896 | Msa0551850:CDS | 30.0% | |
| ACAAGCTTCAAAATCACAAA+TGG | + | chr4_1:48066926-48066945 | Msa0551850:CDS | 30.0% | |
| TCTCACTGATATTTATGATG+CGG | - | chr4_1:48067185-48067204 | None:intergenic | 30.0% | |
| ! | TTTTTGAATGAGTATCTTGC+TGG | + | chr4_1:48067252-48067271 | Msa0551850:CDS | 30.0% |
| ! | GAAGTACTTCTAAAGACATT+GGG | + | chr4_1:48067283-48067302 | Msa0551850:CDS | 30.0% |
| ! | AAGTACTTCTAAAGACATTG+GGG | + | chr4_1:48067284-48067303 | Msa0551850:CDS | 30.0% |
| TATGCCTAATAAGAAACATG+TGG | + | chr4_1:48067347-48067366 | Msa0551850:intron | 30.0% | |
| TTGTCGAAAGTTTGATTCAA+TGG | + | chr4_1:48067407-48067426 | Msa0551850:intron | 30.0% | |
| TGTCGAAAGTTTGATTCAAT+GGG | + | chr4_1:48067408-48067427 | Msa0551850:intron | 30.0% | |
| TTGCGAATTTACAACATCAA+AGG | + | chr4_1:48067450-48067469 | Msa0551850:intron | 30.0% | |
| AAGATGGTCAAAAAAAGCAA+GGG | + | chr4_1:48067506-48067525 | Msa0551850:intron | 30.0% | |
| TCAGAAAATGCAATGAACAA+TGG | + | chr4_1:48067576-48067595 | Msa0551850:intron | 30.0% | |
| TCATAATAGCATTGCGATAA+AGG | - | chr4_1:48067617-48067636 | None:intergenic | 30.0% | |
| AAGAAACTCAACAAATCATG+TGG | + | chr4_1:48067676-48067695 | Msa0551850:intron | 30.0% | |
| TCAACAAATCATGTGGAAAT+TGG | + | chr4_1:48067683-48067702 | Msa0551850:intron | 30.0% | |
| ! | ATCATGTGGAAATTGGTTTA+TGG | + | chr4_1:48067690-48067709 | Msa0551850:intron | 30.0% |
| !! | GGGCATTTTGAAAAAAGAAA+AGG | + | chr4_1:48067873-48067892 | Msa0551850:intron | 30.0% |
| ! | AATGTTCCTTCTACTTCTTT+TGG | + | chr4_1:48068098-48068117 | Msa0551850:intron | 30.0% |
| AGTATTTAAACCCCAATTTG+AGG | - | chr4_1:48068235-48068254 | None:intergenic | 30.0% | |
| ACTAAGATGTTACAAGGAAT+TGG | + | chr4_1:48068270-48068289 | Msa0551850:CDS | 30.0% | |
| AGGTATGTATGTATGTATGT+AGG | + | chr4_1:48068313-48068332 | Msa0551850:intron | 30.0% | |
| ! | TTTTATGTTCTTGCCTATCT+TGG | - | chr4_1:48068431-48068450 | None:intergenic | 30.0% |
| AAGTTAGAGAGAAGATGAAA+TGG | + | chr4_1:48068452-48068471 | Msa0551850:intron | 30.0% | |
| AGTTAGAGAGAAGATGAAAT+GGG | + | chr4_1:48068453-48068472 | Msa0551850:intron | 30.0% | |
| AGATGTTGAAAGCTCAAAAT+TGG | + | chr4_1:48068550-48068569 | Msa0551850:intron | 30.0% | |
| TTCACAACATAATGTAGAAG+CGG | - | chr4_1:48068597-48068616 | None:intergenic | 30.0% | |
| !!! | TTTTGGGATGTTGAACTATT+GGG | - | chr4_1:48068881-48068900 | None:intergenic | 30.0% |
| !!! | ATTTTGGGATGTTGAACTAT+TGG | - | chr4_1:48068882-48068901 | None:intergenic | 30.0% |
| CATCCCAAAATTAAACATTC+TGG | + | chr4_1:48068891-48068910 | Msa0551850:intron | 30.0% | |
| CATTCTGGTACAAACATAAT+CGG | + | chr4_1:48068906-48068925 | Msa0551850:intron | 30.0% | |
| AAACAAAATGCTTCCATTGA+TGG | + | chr4_1:48068984-48069003 | Msa0551850:intron | 30.0% | |
| !! | TGAAAAGTTTTGTCCATCAA+TGG | - | chr4_1:48069000-48069019 | None:intergenic | 30.0% |
| !! | ACTTTTCAAGAGAAGAACAA+AGG | + | chr4_1:48069012-48069031 | Msa0551850:intron | 30.0% |
| !! | CTTTTCAAGAGAAGAACAAA+GGG | + | chr4_1:48069013-48069032 | Msa0551850:intron | 30.0% |
| ! | GACTTTAACCATGTCTTTTA+TGG | - | chr4_1:48069186-48069205 | None:intergenic | 30.0% |
| ! | AAGCCCAGAGATATTTTTCT+TGG | + | chr4_1:48065822-48065841 | Msa0551850:CDS | 35.0% |
| !! | ATGGGTTTTAGTGTGAGAAA+AGG | + | chr4_1:48065903-48065922 | Msa0551850:CDS | 35.0% |
| !! | TGGGTTTTAGTGTGAGAAAA+GGG | + | chr4_1:48065904-48065923 | Msa0551850:CDS | 35.0% |
| ! | TTTTAGTGTGAGAAAAGGGA+AGG | + | chr4_1:48065908-48065927 | Msa0551850:CDS | 35.0% |
| TAGGTGAAGTTGCTTATCAA+AGG | + | chr4_1:48066027-48066046 | Msa0551850:CDS | 35.0% | |
| AGGTGAAGTTGCTTATCAAA+GGG | + | chr4_1:48066028-48066047 | Msa0551850:CDS | 35.0% | |
| CGATTTAATGTTAGCAAGGA+TGG | + | chr4_1:48066083-48066102 | Msa0551850:CDS | 35.0% | |
| AATAAATGTCTTTGCTCGAG+CGG | - | chr4_1:48066158-48066177 | None:intergenic | 35.0% | |
| ! | AAAGTATCAGAAACCAAAGG+AGG | + | chr4_1:48066191-48066210 | Msa0551850:CDS | 35.0% |
| ATAAAGTCTATGGTGAATGC+TGG | + | chr4_1:48066218-48066237 | Msa0551850:CDS | 35.0% | |
| TTGGAGTTATTTAGGAGAAG+AGG | + | chr4_1:48066259-48066278 | Msa0551850:CDS | 35.0% | |
| AGTTATTTAGGAGAAGAGGT+TGG | + | chr4_1:48066263-48066282 | Msa0551850:CDS | 35.0% | |
| ! | CATTGGTTAAACGTGATTCT+TGG | - | chr4_1:48066448-48066467 | None:intergenic | 35.0% |
| ! | CACGTTTAACCAATGTGTTT+TGG | + | chr4_1:48066453-48066472 | Msa0551850:intron | 35.0% |
| !!! | TGATTGTTTTGGAGATGTTG+TGG | + | chr4_1:48066501-48066520 | Msa0551850:intron | 35.0% |
| ! | TTGATATGTGCTCCTTTTGT+TGG | + | chr4_1:48066559-48066578 | Msa0551850:intron | 35.0% |
| ! | TGATATGTGCTCCTTTTGTT+GGG | + | chr4_1:48066560-48066579 | Msa0551850:intron | 35.0% |
| CGTTTGCAAAATGTCATGTT+TGG | + | chr4_1:48066592-48066611 | Msa0551850:intron | 35.0% | |
| !!! | TAAAGTGTTTTTGGAGAGCA+TGG | + | chr4_1:48066663-48066682 | Msa0551850:intron | 35.0% |
| !!! | AAAGTGTTTTTGGAGAGCAT+GGG | + | chr4_1:48066664-48066683 | Msa0551850:intron | 35.0% |
| CATAAACGGTGACATGTATT+TGG | - | chr4_1:48066760-48066779 | None:intergenic | 35.0% | |
| TCACTGATATTTATGATGCG+GGG | - | chr4_1:48067183-48067202 | None:intergenic | 35.0% | |
| CTCACTGATATTTATGATGC+GGG | - | chr4_1:48067184-48067203 | None:intergenic | 35.0% | |
| !! | GGAAGTACTTCTAAAGACAT+TGG | + | chr4_1:48067282-48067301 | Msa0551850:CDS | 35.0% |
| ! | ACCAATACTTTCTGAGAAGA+TGG | + | chr4_1:48067490-48067509 | Msa0551850:intron | 35.0% |
| ! | ACCATCTTCTCAGAAAGTAT+TGG | - | chr4_1:48067494-48067513 | None:intergenic | 35.0% |
| GAAGATGGTCAAAAAAAGCA+AGG | + | chr4_1:48067505-48067524 | Msa0551850:intron | 35.0% | |
| GAAAATGCAATGAACAATGG+TGG | + | chr4_1:48067579-48067598 | Msa0551850:intron | 35.0% | |
| !!! | TAATCTAGTTTTGGATAGCC+AGG | + | chr4_1:48067647-48067666 | Msa0551850:intron | 35.0% |
| ! | ATGTGGAAATTGGTTTATGG+TGG | + | chr4_1:48067693-48067712 | Msa0551850:intron | 35.0% |
| AATTGAGCTCATTGATGCAT+TGG | - | chr4_1:48067734-48067753 | None:intergenic | 35.0% | |
| ! | TTGTTCCATTAGTTCTTCCA+TGG | + | chr4_1:48068035-48068054 | Msa0551850:intron | 35.0% |
| AGGGTTATCATTCCTCAAAT+TGG | + | chr4_1:48068220-48068239 | Msa0551850:intron | 35.0% | |
| GGGTTATCATTCCTCAAATT+GGG | + | chr4_1:48068221-48068240 | Msa0551850:intron | 35.0% | |
| GGTTATCATTCCTCAAATTG+GGG | + | chr4_1:48068222-48068241 | Msa0551850:CDS | 35.0% | |
| !! | CACATGTAACTCATTGATTC+AGG | + | chr4_1:48068293-48068312 | Msa0551850:CDS | 35.0% |
| GCATAACTAGACCCAAAATT+AGG | - | chr4_1:48068513-48068532 | None:intergenic | 35.0% | |
| TGTTGAAAGCTCAAAATTGG+TGG | + | chr4_1:48068553-48068572 | Msa0551850:intron | 35.0% | |
| TCACAACATAATGTAGAAGC+GGG | - | chr4_1:48068596-48068615 | None:intergenic | 35.0% | |
| AAGAAATGGGCATAACAACA+AGG | + | chr4_1:48069065-48069084 | Msa0551850:intron | 35.0% | |
| TTATTGTGCGGTTATCATAG+CGG | + | chr4_1:48069242-48069261 | Msa0551850:intron | 35.0% | |
| CTTTCTCTCTTCTAACTTTG+TGG | - | chr4_1:48069357-48069376 | None:intergenic | 35.0% | |
| CAAGAACATGGCTTCAAGAT+GGG | + | chr4_1:48065885-48065904 | Msa0551850:CDS | 40.0% | |
| ! | CTTATCAAAGGGCTGATTCA+AGG | + | chr4_1:48066039-48066058 | Msa0551850:CDS | 40.0% |
| GGTGCGATTTAATGTTAGCA+AGG | + | chr4_1:48066079-48066098 | Msa0551850:CDS | 40.0% | |
| ATGTTAGCAAGGATGGAGAA+TGG | + | chr4_1:48066090-48066109 | Msa0551850:CDS | 40.0% | |
| AATGGATCACAACCATGCTT+TGG | + | chr4_1:48066130-48066149 | Msa0551850:CDS | 40.0% | |
| AGACTTTATGAGACCTCCTT+TGG | - | chr4_1:48066207-48066226 | None:intergenic | 40.0% | |
| AGGAGGTCTCATAAAGTCTA+TGG | + | chr4_1:48066208-48066227 | Msa0551850:CDS | 40.0% | |
| TATTTAGGAGAAGAGGTTGG+TGG | + | chr4_1:48066266-48066285 | Msa0551850:CDS | 40.0% | |
| !! | GTTGGTGGATTTGATAAGCT+TGG | + | chr4_1:48066281-48066300 | Msa0551850:CDS | 40.0% |
| CTGCACACTATAGTAGAACA+TGG | - | chr4_1:48066420-48066439 | None:intergenic | 40.0% | |
| !!! | ACCAATGTGTTTTGGAGAGA+TGG | + | chr4_1:48066461-48066480 | Msa0551850:intron | 40.0% |
| ACCATCTCTCCAAAACACAT+TGG | - | chr4_1:48066465-48066484 | None:intergenic | 40.0% | |
| ! | GATATGTGCTCCTTTTGTTG+GGG | + | chr4_1:48066561-48066580 | Msa0551850:intron | 40.0% |
| CGATGATTTACCCCAACAAA+AGG | - | chr4_1:48066574-48066593 | None:intergenic | 40.0% | |
| CATGTCACCGTTTATGCTTA+TGG | + | chr4_1:48066764-48066783 | Msa0551850:intron | 40.0% | |
| ! | CAGAATGCACCTTCTCATTT+TGG | + | chr4_1:48066796-48066815 | Msa0551850:intron | 40.0% |
| !! | AAGAAGAGTTTGAAGGCACT+TGG | + | chr4_1:48066884-48066903 | Msa0551850:CDS | 40.0% |
| GCGACAATTAGAGACTGAAA+AGG | + | chr4_1:48067131-48067150 | Msa0551850:CDS | 40.0% | |
| AATGAGTATCTTGCTGGAAC+TGG | + | chr4_1:48067258-48067277 | Msa0551850:CDS | 40.0% | |
| !! | CTTCTCAGAAAGTATTGGTC+AGG | - | chr4_1:48067489-48067508 | None:intergenic | 40.0% |
| AGCATTGCGATAAAGGATCA+TGG | - | chr4_1:48067610-48067629 | None:intergenic | 40.0% | |
| GTTGAGTTTCTTTGTGTTCC+TGG | - | chr4_1:48067668-48067687 | None:intergenic | 40.0% | |
| !!! | ACCTTCCTTTAGTTTTTGCG+CGG | - | chr4_1:48067836-48067855 | None:intergenic | 40.0% |
| AGGTCTAATACTCGCATGAA+AGG | + | chr4_1:48067852-48067871 | Msa0551850:intron | 40.0% | |
| GGTCTAATACTCGCATGAAA+GGG | + | chr4_1:48067853-48067872 | Msa0551850:intron | 40.0% | |
| ! | TCCATTAGTTCTTCCATGGA+TGG | + | chr4_1:48068039-48068058 | Msa0551850:intron | 40.0% |
| !! | TTCTTTTGGTGCACCTTTAG+AGG | + | chr4_1:48068112-48068131 | Msa0551850:intron | 40.0% |
| !! | CTATCTTGGAAAGCACTACT+TGG | - | chr4_1:48068417-48068436 | None:intergenic | 40.0% |
| CAAGTAGTGCTTTCCAAGAT+AGG | + | chr4_1:48068415-48068434 | Msa0551850:intron | 40.0% | |
| GTCTAGTTATGCAGTACTTC+TGG | + | chr4_1:48068521-48068540 | Msa0551850:intron | 40.0% | |
| !! | TGGTGGTTTTGCTTATGAAG+TGG | + | chr4_1:48068570-48068589 | Msa0551850:intron | 40.0% |
| ! | TCTTTTATGGAGTCTGGGTT+GGG | - | chr4_1:48069173-48069192 | None:intergenic | 40.0% |
| ! | CCATGTCTTTTATGGAGTCT+GGG | - | chr4_1:48069178-48069197 | None:intergenic | 40.0% |
| ! | ACCATGTCTTTTATGGAGTC+TGG | - | chr4_1:48069179-48069198 | None:intergenic | 40.0% |
| ! | TGGTCAAGTTGTGCATAGCA+AGG | + | chr4_1:48065842-48065861 | Msa0551850:CDS | 45.0% |
| CCATCTTGAAGCCATGTTCT+TGG | - | chr4_1:48065887-48065906 | None:intergenic | 45.0% | |
| CCAAGAACATGGCTTCAAGA+TGG | + | chr4_1:48065884-48065903 | Msa0551850:CDS | 45.0% | |
| GAACCAGAAGGAGAAATCGT+AGG | + | chr4_1:48066008-48066027 | Msa0551850:CDS | 45.0% | |
| TCACCTACGATTTCTCCTTC+TGG | - | chr4_1:48066014-48066033 | None:intergenic | 45.0% | |
| CATTACGTCTCCGATTGCTT+TGG | - | chr4_1:48066737-48066756 | None:intergenic | 45.0% | |
| !! | ATGGAGCACTGCATATAGCA+AGG | + | chr4_1:48066978-48066997 | Msa0551850:CDS | 45.0% |
| AGTGTGTTAAGTGCGATTGC+CGG | + | chr4_1:48067051-48067070 | Msa0551850:CDS | 45.0% | |
| CTGATATTTATGATGCGGGG+AGG | - | chr4_1:48067180-48067199 | None:intergenic | 45.0% | |
| GCCATCCATGGAAGAACTAA+TGG | - | chr4_1:48068043-48068062 | None:intergenic | 45.0% | |
| GAACATTAGAAGGCCATCCA+TGG | - | chr4_1:48068055-48068074 | None:intergenic | 45.0% | |
| GGTGCACCAAAAGAAGTAGA+AGG | - | chr4_1:48068107-48068126 | None:intergenic | 45.0% | |
| !! | GGTTGGGATTTTGGGGATTT+AGG | - | chr4_1:48069157-48069176 | None:intergenic | 45.0% |
| ! | GTCTTTTATGGAGTCTGGGT+TGG | - | chr4_1:48069174-48069193 | None:intergenic | 45.0% |
| CCCAGACTCCATAAAAGACA+TGG | + | chr4_1:48069175-48069194 | Msa0551850:intron | 45.0% | |
| TCCACAATCTCATCAGAACG+TGG | + | chr4_1:48069215-48069234 | Msa0551850:intron | 45.0% | |
| ACCACGTTCTGATGAGATTG+TGG | - | chr4_1:48069219-48069238 | None:intergenic | 45.0% | |
| ! | GAACGTGGTGCTTTATTGTG+CGG | + | chr4_1:48069230-48069249 | Msa0551850:intron | 45.0% |
| GGAGCCATGACCAAAGCAAT+CGG | + | chr4_1:48066724-48066743 | Msa0551850:intron | 50.0% | |
| GTCTCCGATTGCTTTGGTCA+TGG | - | chr4_1:48066731-48066750 | None:intergenic | 50.0% | |
| ! | ACTTAGACTGGTTGCTGCTC+CGG | - | chr4_1:48067073-48067092 | None:intergenic | 50.0% |
| GAGTATCTTGCTGGAACTGG+TGG | + | chr4_1:48067261-48067280 | Msa0551850:CDS | 50.0% | |
| ACAACTGATCGTTGCAGCAG+AGG | - | chr4_1:48067385-48067404 | None:intergenic | 50.0% | |
| GCCGCGCAAAAACTAAAGGA+AGG | + | chr4_1:48067832-48067851 | Msa0551850:intron | 50.0% | |
| !! | GAGAAGATGAAATGGGCTGC+TGG | + | chr4_1:48068460-48068479 | Msa0551850:intron | 50.0% |
| ACAAGGACTGCTACAGAGCA+AGG | + | chr4_1:48069082-48069101 | Msa0551850:intron | 50.0% | |
| !! | GAGTCTGGGTTGGGATTTTG+GGG | - | chr4_1:48069164-48069183 | None:intergenic | 50.0% |
| !! | GGAGTCTGGGTTGGGATTTT+GGG | - | chr4_1:48069165-48069184 | None:intergenic | 50.0% |
| !! | TGGAGTCTGGGTTGGGATTT+TGG | - | chr4_1:48069166-48069185 | None:intergenic | 50.0% |
| ! | TGTGCGGTTATCATAGCGGA+TGG | + | chr4_1:48069246-48069265 | Msa0551850:intron | 50.0% |
| TGGACTTGAGGTCGAAGTAG+TGG | + | chr4_1:48069294-48069313 | Msa0551850:CDS | 50.0% | |
| AGCACAGCAAAGTTCGCAGT+CGG | + | chr4_1:48069318-48069337 | Msa0551850:CDS | 50.0% | |
| ! | TGATGCGGGGAGGCATACTT+TGG | - | chr4_1:48067170-48067189 | None:intergenic | 55.0% |
| !!! | CCTTTAGTTTTTGCGCGGCG+AGG | - | chr4_1:48067831-48067850 | None:intergenic | 55.0% |
| CCTCGCCGCGCAAAAACTAA+AGG | + | chr4_1:48067828-48067847 | Msa0551850:intron | 55.0% | |
| AGTTCGCAGTCGGATATCGC+AGG | + | chr4_1:48069328-48069347 | Msa0551850:CDS | 55.0% | |
| TCGCAGTCGGATATCGCAGG+TGG | + | chr4_1:48069331-48069350 | Msa0551850:CDS | 60.0% | |
| GCTCGAGCGGCACCAAAGCA+TGG | - | chr4_1:48066145-48066164 | None:intergenic | 65.0% | |
| AAGTCCATCGCGCGCTGCAC+TGG | - | chr4_1:48069281-48069300 | None:intergenic | 65.0% | |
| ! | TGCAGCGCGCGATGGACTTG+AGG | + | chr4_1:48069282-48069301 | Msa0551850:CDS | 65.0% |
| CGAGCCAGTGCAGCGCGCGA+TGG | + | chr4_1:48069274-48069293 | Msa0551850:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 48065786 | 48069384 | 48065786 | ID=Msa0551850;Name=Msa0551850 |
| chr4_1 | mRNA | 48065786 | 48069384 | 48065786 | ID=Msa0551850-mRNA-1;Parent=Msa0551850;Name=Msa0551850-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.5|1|1|4|0|412 |
| chr4_1 | exon | 48065786 | 48066347 | 48065786 | ID=Msa0551850-mRNA-1:exon:13112;Parent=Msa0551850-mRNA-1 |
| chr4_1 | exon | 48066872 | 48067332 | 48066872 | ID=Msa0551850-mRNA-1:exon:13113;Parent=Msa0551850-mRNA-1 |
| chr4_1 | exon | 48068222 | 48068314 | 48068222 | ID=Msa0551850-mRNA-1:exon:13114;Parent=Msa0551850-mRNA-1 |
| chr4_1 | exon | 48069262 | 48069384 | 48069262 | ID=Msa0551850-mRNA-1:exon:13115;Parent=Msa0551850-mRNA-1 |
| chr4_1 | CDS | 48065786 | 48066347 | 48065786 | ID=Msa0551850-mRNA-1:cds;Parent=Msa0551850-mRNA-1 |
| chr4_1 | CDS | 48066872 | 48067332 | 48066872 | ID=Msa0551850-mRNA-1:cds;Parent=Msa0551850-mRNA-1 |
| chr4_1 | CDS | 48068222 | 48068314 | 48068222 | ID=Msa0551850-mRNA-1:cds;Parent=Msa0551850-mRNA-1 |
| chr4_1 | CDS | 48069262 | 48069384 | 48069262 | ID=Msa0551850-mRNA-1:cds;Parent=Msa0551850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
