Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552060 | XP_013450939.1 | 84.774 | 532 | 77 | 2 | 29 | 556 | 309 | 840 | 0.0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552060 | sp|Q0WPF2|PCFS4_ARATH | 43.717 | 565 | 212 | 17 | 39 | 556 | 303 | 808 | 1.15e-123 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552060 | A0A072U797 | 84.774 | 532 | 77 | 2 | 29 | 556 | 309 | 840 | 0.0 | 867 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0552060 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552060 | MtrunA17_Chr6g0452881 | 84.774 | 532 | 77 | 2 | 29 | 556 | 309 | 840 | 0.0 | 867 |
| Msa0552060 | MtrunA17_Chr6g0452891 | 73.469 | 245 | 37 | 3 | 285 | 529 | 1 | 217 | 9.24e-121 | 354 |
| Msa0552060 | MtrunA17_Chr4g0037071 | 87.755 | 196 | 24 | 0 | 347 | 542 | 1 | 196 | 2.11e-110 | 328 |
| Msa0552060 | MtrunA17_Chr4g0037081 | 88.398 | 181 | 19 | 1 | 1 | 181 | 1 | 179 | 4.11e-106 | 316 |
| Msa0552060 | MtrunA17_Chr7g0265781 | 35.632 | 174 | 108 | 3 | 362 | 533 | 848 | 1019 | 6.40e-34 | 137 |
| Msa0552060 | MtrunA17_Chr1g0179281 | 35.593 | 177 | 108 | 4 | 362 | 534 | 839 | 1013 | 2.34e-32 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552060 | AT4G04885.1 | 43.717 | 565 | 212 | 17 | 39 | 556 | 303 | 808 | 1.17e-124 | 385 |
| Msa0552060 | AT1G66500.1 | 38.966 | 290 | 119 | 14 | 279 | 530 | 120 | 389 | 8.42e-45 | 164 |
| Msa0552060 | AT5G43620.1 | 36.271 | 295 | 115 | 12 | 279 | 530 | 119 | 383 | 2.07e-43 | 160 |
| Msa0552060 | AT2G36480.2 | 32.203 | 177 | 111 | 3 | 362 | 538 | 786 | 953 | 6.16e-25 | 110 |
| Msa0552060 | AT2G36480.1 | 32.203 | 177 | 111 | 3 | 362 | 538 | 786 | 953 | 6.16e-25 | 110 |
Find 145 sgRNAs with CRISPR-Local
Find 424 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATAATGCACATGTATTT+TGG | 0.156121 | 4_1:-48494813 | None:intergenic |
| AAACAGCTCTTTCGGTTTCC+TGG | 0.212509 | 4_1:+48494177 | Msa0552060:CDS |
| TGCGAGAGGGCTTCTGCTTA+TGG | 0.263284 | 4_1:-48494654 | None:intergenic |
| ACGCGGAGCATGCACATTTA+TGG | 0.263678 | 4_1:-48493780 | None:intergenic |
| TTATTCCATTAGGCGTATTA+AGG | 0.289551 | 4_1:-48494900 | None:intergenic |
| AAGAGCTGTTTGCAATTCTT+TGG | 0.289612 | 4_1:-48494165 | None:intergenic |
| TGACGAACCTTCAGAAGATT+TGG | 0.298615 | 4_1:-48494499 | None:intergenic |
| GCTTACTGCCAGAAGTTTCT+TGG | 0.305569 | 4_1:-48493472 | None:intergenic |
| TCTTTGGCTGCCTTCTTCAT+AGG | 0.310252 | 4_1:-48495509 | None:intergenic |
| ATGCCTGTTGTTATTCCATT+AGG | 0.318753 | 4_1:-48494910 | None:intergenic |
| AGAAACCATTACTTCTACTA+TGG | 0.330076 | 4_1:-48493610 | None:intergenic |
| ATGCATTTAGCATGAATAAT+GGG | 0.333257 | 4_1:-48494952 | None:intergenic |
| GATTCGAATGGATTCCTAAC+AGG | 0.333615 | 4_1:-48493839 | None:intergenic |
| TCTAGGAAGATCGCCATATA+AGG | 0.342211 | 4_1:-48494539 | None:intergenic |
| TCTGCAATCAGTGCCTTATA+TGG | 0.351640 | 4_1:+48494526 | Msa0552060:CDS |
| GGTTTCTTGCAACCAACTAT+TGG | 0.360158 | 4_1:+48493626 | Msa0552060:CDS |
| TATGCATTTAGCATGAATAA+TGG | 0.367648 | 4_1:-48494953 | None:intergenic |
| GGTAGAGCATGTGGGCCAGC+TGG | 0.367975 | 4_1:-48494223 | None:intergenic |
| AACAGCTCTTTCGGTTTCCT+GGG | 0.369608 | 4_1:+48494178 | Msa0552060:CDS |
| TCAGCGTCAAGGGTGTTTCC+TGG | 0.373151 | 4_1:+48493695 | Msa0552060:CDS |
| TGGCAGTAAGCCTTTGTTAG+TGG | 0.376982 | 4_1:+48493484 | Msa0552060:CDS |
| TCAAAAGTTGCTGGCAGAAC+TGG | 0.381258 | 4_1:-48493746 | None:intergenic |
| TAGGCATCAATTAGAGCTCT+TGG | 0.388106 | 4_1:-48493434 | None:intergenic |
| AGAATTGCAAACAGCTCTTT+CGG | 0.388388 | 4_1:+48494169 | Msa0552060:CDS |
| TGTGACTTCTGTGCTCATCT+TGG | 0.389046 | 4_1:-48494594 | None:intergenic |
| GCTGATTAGGCAACTGATAC+AGG | 0.398235 | 4_1:-48493961 | None:intergenic |
| GACAAAAGCCAAGAAACTTC+TGG | 0.416293 | 4_1:+48493464 | Msa0552060:CDS |
| TTGCCACCTTTACCTCCAGC+TGG | 0.419948 | 4_1:+48494208 | Msa0552060:CDS |
| GTGACTTCTGTGCTCATCTT+GGG | 0.422924 | 4_1:-48494593 | None:intergenic |
| GATTGGGATTAGGTAGAATC+TGG | 0.424134 | 4_1:-48494246 | None:intergenic |
| AAAGAAAGAAGATGAAGAGT+TGG | 0.425274 | 4_1:+48494771 | Msa0552060:CDS |
| GGATTCTTCGATGGAAATAT+AGG | 0.431337 | 4_1:-48493818 | None:intergenic |
| CTGTTTGCAATTCTTTGGCC+TGG | 0.431824 | 4_1:-48494160 | None:intergenic |
| CTTAGTGGTGCAGAGGCATT+GGG | 0.433928 | 4_1:+48494703 | Msa0552060:CDS |
| GAAGGACCAGGATTGGGATT+AGG | 0.436097 | 4_1:-48494256 | None:intergenic |
| GTGGACAAACGCCACCATTC+CGG | 0.438771 | 4_1:+48494017 | Msa0552060:CDS |
| TTCATCTTGGTGGGAATACT+CGG | 0.444524 | 4_1:+48493309 | Msa0552060:CDS |
| GACACAGAAGGACCAGGATT+GGG | 0.445177 | 4_1:-48494262 | None:intergenic |
| GCTTAGTGGTGCAGAGGCAT+TGG | 0.449928 | 4_1:+48494702 | Msa0552060:CDS |
| GCGTTTGTCCACTGTTATGC+GGG | 0.451893 | 4_1:-48494006 | None:intergenic |
| GTATACCTTAATACGCCTAA+TGG | 0.453857 | 4_1:+48494895 | Msa0552060:CDS |
| TAACAAGTTGTGCATTCGGC+AGG | 0.456111 | 4_1:-48494123 | None:intergenic |
| GGCTAATCAAGCCGCTGCGC+TGG | 0.457758 | 4_1:+48494354 | Msa0552060:CDS |
| CGCCTCGTTTCAAAAGTTGC+TGG | 0.461501 | 4_1:-48493755 | None:intergenic |
| TGGAAATATAGGAGTTATGC+TGG | 0.461860 | 4_1:-48493807 | None:intergenic |
| GGCATAACAAGTTGTGCATT+CGG | 0.461896 | 4_1:-48494127 | None:intergenic |
| TAAGTAAATTGTGACGCTGC+TGG | 0.462016 | 4_1:-48494058 | None:intergenic |
| TTCCATCGAAGAATCCTGTT+AGG | 0.463431 | 4_1:+48493825 | Msa0552060:CDS |
| GCTCATCTTGGGACTTGAAT+CGG | 0.465641 | 4_1:-48494582 | None:intergenic |
| CTTTGGCCTGGCGAAGGAAG+TGG | 0.465990 | 4_1:-48494148 | None:intergenic |
| TTGGGAGCTGAATCAGCTCC+AGG | 0.466055 | 4_1:+48494721 | Msa0552060:CDS |
| ATAACTGATGAAGAATCCTT+TGG | 0.473354 | 4_1:-48493341 | None:intergenic |
| TCACTGTAAAACTTGTCAAA+AGG | 0.474303 | 4_1:-48494841 | None:intergenic |
| GCCTTTGTTAGTGGAGCGAC+CGG | 0.474907 | 4_1:+48493493 | Msa0552060:CDS |
| GGCCCAAGGTGTTATGTCAT+TGG | 0.480316 | 4_1:+48494333 | Msa0552060:CDS |
| CCATGTTCATGCACAGGAAA+AGG | 0.480750 | 4_1:-48493908 | None:intergenic |
| TATTGGTTTCTCATCAGAAA+AGG | 0.481430 | 4_1:+48493643 | Msa0552060:CDS |
| TCTGATGAGAAACCAATAGT+TGG | 0.483041 | 4_1:-48493638 | None:intergenic |
| ACTTATAGCACTTCTTTGCC+AGG | 0.484285 | 4_1:+48494076 | Msa0552060:CDS |
| TGTGGGCCAGCTGGAGGTAA+AGG | 0.486896 | 4_1:-48494214 | None:intergenic |
| ACGCCTAATGGAATAACAAC+AGG | 0.488809 | 4_1:+48494907 | Msa0552060:CDS |
| TTAGCATTTATTGATTCGAA+TGG | 0.491940 | 4_1:-48493851 | None:intergenic |
| TGACACAGAAGGACCAGGAT+TGG | 0.501011 | 4_1:-48494263 | None:intergenic |
| ATCAGACCGGGTAGCTGATT+AGG | 0.502180 | 4_1:-48493974 | None:intergenic |
| CTGAAGAGGAGGAGTTCGAT+TGG | 0.502985 | 4_1:+48493561 | Msa0552060:CDS |
| GGCATGGACAGGTCGCAGTT+AGG | 0.505187 | 4_1:+48494928 | Msa0552060:CDS |
| CCACAAGTTGTGCACTGTCT+AGG | 0.505428 | 4_1:-48494556 | None:intergenic |
| TCATCAAAACATCTCTTTCG+CGG | 0.506613 | 4_1:-48493374 | None:intergenic |
| TAATTTGATTAGTTCACTCA+TGG | 0.508846 | 4_1:+48494312 | Msa0552060:CDS |
| CCATCACAAAATATTCAGAC+AGG | 0.509001 | 4_1:-48494987 | None:intergenic |
| AGAGCTCTAATTGATGCCTA+TGG | 0.514260 | 4_1:+48493437 | Msa0552060:CDS |
| ACAAGTTGTGCATTCGGCAG+GGG | 0.514771 | 4_1:-48494121 | None:intergenic |
| AGCCAATGACATAACACCTT+GGG | 0.518658 | 4_1:-48494335 | None:intergenic |
| ACAGTGATGAAACGGAGGAT+TGG | 0.518817 | 4_1:+48494857 | Msa0552060:CDS |
| ACGGAGGATTGGATGTATAG+AGG | 0.522404 | 4_1:+48494868 | Msa0552060:CDS |
| AGCACAGAAGTCACATGGAT+TGG | 0.529243 | 4_1:+48494602 | Msa0552060:CDS |
| TGAAGAGGAGGAGTTCGATT+GGG | 0.536389 | 4_1:+48493562 | Msa0552060:CDS |
| CAGCTCTTTCGGTTTCCTGG+GGG | 0.541573 | 4_1:+48494180 | Msa0552060:CDS |
| CTCATAGCAGCACAATGTCC+TGG | 0.542263 | 4_1:-48494094 | None:intergenic |
| AATATCCAACAGTTGGCTGT+TGG | 0.544187 | 4_1:-48494288 | None:intergenic |
| ACAGCTCTTTCGGTTTCCTG+GGG | 0.544294 | 4_1:+48494179 | Msa0552060:CDS |
| AAATTAGAATATCCAACAGT+TGG | 0.545058 | 4_1:-48494295 | None:intergenic |
| TGCAACTACTTCAGCGTCAA+GGG | 0.545212 | 4_1:+48493685 | Msa0552060:CDS |
| GAATAACAACAGGCATGGAC+AGG | 0.551052 | 4_1:+48494917 | Msa0552060:CDS |
| GCAATTCTTTGGCCTGGCGA+AGG | 0.555122 | 4_1:-48494154 | None:intergenic |
| GTTATGCCACTTCCTTCGCC+AGG | 0.555543 | 4_1:+48494142 | Msa0552060:CDS |
| GGCGTTTGTCCACTGTTATG+CGG | 0.558202 | 4_1:-48494007 | None:intergenic |
| GTGCAACTACTTCAGCGTCA+AGG | 0.559076 | 4_1:+48493684 | Msa0552060:CDS |
| AGCAGAAGCCCTCTCGCAAG+TGG | 0.560089 | 4_1:+48494659 | Msa0552060:CDS |
| AGAATCTGGGGTAGAGCATG+TGG | 0.560420 | 4_1:-48494232 | None:intergenic |
| AAAGTTGCTGGCAGAACTGG+TGG | 0.562453 | 4_1:-48493743 | None:intergenic |
| TTCCTAACAGGATTCTTCGA+TGG | 0.563320 | 4_1:-48493827 | None:intergenic |
| AGTAGTTGCACTTGCTGCAA+CGG | 0.563425 | 4_1:-48493672 | None:intergenic |
| ATCAAGAAGATGCTTGCTGA+TGG | 0.563854 | 4_1:+48493284 | None:intergenic |
| ATTCTACCTAATCCCAATCC+TGG | 0.565745 | 4_1:+48494250 | Msa0552060:CDS |
| TGGCTTGACACAGAAGGACC+AGG | 0.566253 | 4_1:-48494268 | None:intergenic |
| CTACTATGGTCTACTAGTGT+CGG | 0.567210 | 4_1:-48493596 | None:intergenic |
| GGCTGTTGGCTTGACACAGA+AGG | 0.567803 | 4_1:-48494274 | None:intergenic |
| TCAAGCCAACAGCCAACTGT+TGG | 0.568482 | 4_1:+48494283 | Msa0552060:CDS |
| GACGCTGCTGGATCCTGAGA+TGG | 0.569203 | 4_1:-48494046 | None:intergenic |
| CGGGTTAGATGAAATCAGAC+CGG | 0.570016 | 4_1:-48493987 | None:intergenic |
| GTAGACCATAGTAGAAGTAA+TGG | 0.573238 | 4_1:+48493605 | Msa0552060:CDS |
| ATTAGTTCACTCATGGCCCA+AGG | 0.574805 | 4_1:+48494319 | Msa0552060:CDS |
| GTTTGATCCAAATCTTCTGA+AGG | 0.578645 | 4_1:+48494492 | Msa0552060:CDS |
| GGAGTTATGCTGGGAGGACG+CGG | 0.578950 | 4_1:-48493797 | None:intergenic |
| AACAAGTTGTGCATTCGGCA+GGG | 0.580020 | 4_1:-48494122 | None:intergenic |
| CAAGTTGTGCATTCGGCAGG+GGG | 0.582637 | 4_1:-48494120 | None:intergenic |
| TCCGGTCGCTCCACTAACAA+AGG | 0.582967 | 4_1:-48493494 | None:intergenic |
| ATGCAGGGCACCTATGAAGA+AGG | 0.583079 | 4_1:+48495499 | Msa0552060:intron |
| CCTAGACAGTGCACAACTTG+TGG | 0.586792 | 4_1:+48494556 | Msa0552060:CDS |
| TCAACACCATGTTCATGCAC+AGG | 0.588454 | 4_1:-48493914 | None:intergenic |
| AGCTCTTTCGGTTTCCTGGG+GGG | 0.591033 | 4_1:+48494181 | Msa0552060:CDS |
| AGTGAGACGATGTGGCTTAG+TGG | 0.601641 | 4_1:+48494688 | Msa0552060:CDS |
| TAATGGAATAACAACAGGCA+TGG | 0.604751 | 4_1:+48494912 | Msa0552060:CDS |
| AATAGTACCAGTGTGAGTAA+TGG | 0.608110 | 4_1:+48493872 | Msa0552060:CDS |
| AGAGCATGTGGGCCAGCTGG+AGG | 0.611285 | 4_1:-48494220 | None:intergenic |
| GGAAATATAGGAGTTATGCT+GGG | 0.611878 | 4_1:-48493806 | None:intergenic |
| AATTAGACCATTACTCACAC+TGG | 0.612003 | 4_1:-48493879 | None:intergenic |
| CTCACAAACCACTTGCGAGA+GGG | 0.612344 | 4_1:-48494667 | None:intergenic |
| GGGTTAGATGAAATCAGACC+GGG | 0.617202 | 4_1:-48493986 | None:intergenic |
| ATTGGGATTAGGTAGAATCT+GGG | 0.617573 | 4_1:-48494245 | None:intergenic |
| TAGCCAATGACATAACACCT+TGG | 0.621234 | 4_1:-48494336 | None:intergenic |
| TGCATTTAGCATGAATAATG+GGG | 0.625810 | 4_1:-48494951 | None:intergenic |
| TACTCGGAGCGAAATACCAA+AGG | 0.632478 | 4_1:+48493325 | Msa0552060:CDS |
| ATGGCAGAATACTGAAGAGG+AGG | 0.632607 | 4_1:+48493550 | Msa0552060:CDS |
| ACTCACAAACCACTTGCGAG+AGG | 0.632815 | 4_1:-48494668 | None:intergenic |
| AGATGAGCACAGAAGTCACA+TGG | 0.637659 | 4_1:+48494597 | Msa0552060:CDS |
| GGGCCAGCTGGAGGTAAAGG+TGG | 0.639466 | 4_1:-48494211 | None:intergenic |
| CAGTTGCCTAATCAGCTACC+CGG | 0.639744 | 4_1:+48493968 | Msa0552060:CDS |
| GCAGCCAAAGAAAACGAATG+TGG | 0.641390 | 4_1:+48495521 | Msa0552060:CDS |
| ATAAGTTTATGACAACATCA+TGG | 0.644139 | 4_1:+48493531 | Msa0552060:CDS |
| CATCTTGGGACTTGAATCGG+AGG | 0.650361 | 4_1:-48494579 | None:intergenic |
| TCAATATTAGAATTGAGACC+AGG | 0.653967 | 4_1:-48493713 | None:intergenic |
| GATGTGGCTTAGTGGTGCAG+AGG | 0.663497 | 4_1:+48494696 | Msa0552060:CDS |
| ATCATGGCAGAATACTGAAG+AGG | 0.665757 | 4_1:+48493547 | Msa0552060:CDS |
| AGATTTAGTTACCAGCGCAG+CGG | 0.668143 | 4_1:-48494365 | None:intergenic |
| CATCACAAAATATTCAGACA+GGG | 0.668681 | 4_1:-48494986 | None:intergenic |
| TCATCTAACCCGCATAACAG+TGG | 0.680332 | 4_1:+48493998 | Msa0552060:CDS |
| GAATCTGGGGTAGAGCATGT+GGG | 0.680646 | 4_1:-48494231 | None:intergenic |
| TTGGGATTAGGTAGAATCTG+GGG | 0.686989 | 4_1:-48494244 | None:intergenic |
| TTGCTGGCAGAACTGGTGGA+CGG | 0.691595 | 4_1:-48493739 | None:intergenic |
| GAGTTAAGCTATCTCAACAA+CGG | 0.702080 | 4_1:+48493395 | Msa0552060:CDS |
| GGTTTGTGAGTGAGACGATG+TGG | 0.711325 | 4_1:+48494680 | Msa0552060:CDS |
| AATATAGGAGTTATGCTGGG+AGG | 0.735215 | 4_1:-48493803 | None:intergenic |
| TTTGCCAACCGAGACCACCG+AGG | 0.785753 | 4_1:+48494747 | Msa0552060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAATATAATTACAAAAT+TGG | - | chr4_1:48494446-48494465 | None:intergenic | 10.0% |
| !! | TAACAATATAATTACAAAAT+TGG | - | chr4_1:48494446-48494465 | None:intergenic | 10.0% |
| !! | AATTATATTGTTATGTTTGT+AGG | + | chr4_1:48494453-48494472 | Msa0552060:intron | 15.0% |
| !! | AATTATATTGTTATGTTTGT+AGG | + | chr4_1:48494453-48494472 | Msa0552060:intron | 15.0% |
| !! | GGGATATAAAAATTAAACTA+AGG | - | chr4_1:48494393-48494412 | None:intergenic | 20.0% |
| !! | AATGAATTAAAGACATAAAG+TGG | - | chr4_1:48495071-48495090 | None:intergenic | 20.0% |
| !! | GGGATATAAAAATTAAACTA+AGG | - | chr4_1:48494393-48494412 | None:intergenic | 20.0% |
| !! | AATGAATTAAAGACATAAAG+TGG | - | chr4_1:48495071-48495090 | None:intergenic | 20.0% |
| ! | ATAAGTTTATGACAACATCA+TGG | + | chr4_1:48493531-48493550 | Msa0552060:CDS | 25.0% |
| !!! | TTAGCATTTATTGATTCGAA+TGG | - | chr4_1:48493854-48493873 | None:intergenic | 25.0% |
| ! | AAATTAGAATATCCAACAGT+TGG | - | chr4_1:48494298-48494317 | None:intergenic | 25.0% |
| !! | TAATTTGATTAGTTCACTCA+TGG | + | chr4_1:48494312-48494331 | Msa0552060:CDS | 25.0% |
| ! | AACAAAAATGGAAGGAAAAT+GGG | - | chr4_1:48494413-48494432 | None:intergenic | 25.0% |
| ! | AAACAAAAATGGAAGGAAAA+TGG | - | chr4_1:48494414-48494433 | None:intergenic | 25.0% |
| !! | TTATGTTTGTAGGATTTTGT+TGG | + | chr4_1:48494463-48494482 | Msa0552060:intron | 25.0% |
| !! | TACATAATGCACATGTATTT+TGG | - | chr4_1:48494816-48494835 | None:intergenic | 25.0% |
| ! | ATGCATTTAGCATGAATAAT+GGG | - | chr4_1:48494955-48494974 | None:intergenic | 25.0% |
| ! | TATGCATTTAGCATGAATAA+TGG | - | chr4_1:48494956-48494975 | None:intergenic | 25.0% |
| !!! | AATATTTTGTGATGGATGAA+GGG | + | chr4_1:48494995-48495014 | Msa0552060:CDS | 25.0% |
| !! | ATTGACTGACATATGTTTTT+GGG | + | chr4_1:48495088-48495107 | Msa0552060:intron | 25.0% |
| !!! | TTATGTTTTTTCTTTCCCAT+TGG | + | chr4_1:48495148-48495167 | Msa0552060:intron | 25.0% |
| !! | CAAAAACAAGTTTTACCAAT+GGG | - | chr4_1:48495166-48495185 | None:intergenic | 25.0% |
| !!! | CATTGGTAAAACTTGTTTTT+GGG | + | chr4_1:48495165-48495184 | Msa0552060:intron | 25.0% |
| !!! | ATTGGTAAAACTTGTTTTTG+GGG | + | chr4_1:48495166-48495185 | Msa0552060:intron | 25.0% |
| ! | AAATATACGTGCCTATTTAA+TGG | + | chr4_1:48495389-48495408 | Msa0552060:intron | 25.0% |
| ! | ATAATAACATCATGTGAAGT+TGG | - | chr4_1:48495418-48495437 | None:intergenic | 25.0% |
| ! | CATGATGTTATTATTTCAAG+TGG | + | chr4_1:48495424-48495443 | Msa0552060:intron | 25.0% |
| ! | ATAAGTTTATGACAACATCA+TGG | + | chr4_1:48493531-48493550 | Msa0552060:CDS | 25.0% |
| !!! | TTAGCATTTATTGATTCGAA+TGG | - | chr4_1:48493854-48493873 | None:intergenic | 25.0% |
| ! | AAATTAGAATATCCAACAGT+TGG | - | chr4_1:48494298-48494317 | None:intergenic | 25.0% |
| !! | TAATTTGATTAGTTCACTCA+TGG | + | chr4_1:48494312-48494331 | Msa0552060:CDS | 25.0% |
| ! | AACAAAAATGGAAGGAAAAT+GGG | - | chr4_1:48494413-48494432 | None:intergenic | 25.0% |
| ! | AAACAAAAATGGAAGGAAAA+TGG | - | chr4_1:48494414-48494433 | None:intergenic | 25.0% |
| !! | TTATGTTTGTAGGATTTTGT+TGG | + | chr4_1:48494463-48494482 | Msa0552060:intron | 25.0% |
| !! | TACATAATGCACATGTATTT+TGG | - | chr4_1:48494816-48494835 | None:intergenic | 25.0% |
| ! | ATGCATTTAGCATGAATAAT+GGG | - | chr4_1:48494955-48494974 | None:intergenic | 25.0% |
| ! | TATGCATTTAGCATGAATAA+TGG | - | chr4_1:48494956-48494975 | None:intergenic | 25.0% |
| !!! | AATATTTTGTGATGGATGAA+GGG | + | chr4_1:48494995-48495014 | Msa0552060:CDS | 25.0% |
| !! | ATTGACTGACATATGTTTTT+GGG | + | chr4_1:48495088-48495107 | Msa0552060:intron | 25.0% |
| !!! | TTATGTTTTTTCTTTCCCAT+TGG | + | chr4_1:48495148-48495167 | Msa0552060:intron | 25.0% |
| !! | CAAAAACAAGTTTTACCAAT+GGG | - | chr4_1:48495166-48495185 | None:intergenic | 25.0% |
| !!! | CATTGGTAAAACTTGTTTTT+GGG | + | chr4_1:48495165-48495184 | Msa0552060:intron | 25.0% |
| !!! | ATTGGTAAAACTTGTTTTTG+GGG | + | chr4_1:48495166-48495185 | Msa0552060:intron | 25.0% |
| ! | AAATATACGTGCCTATTTAA+TGG | + | chr4_1:48495389-48495408 | Msa0552060:intron | 25.0% |
| ! | ATAATAACATCATGTGAAGT+TGG | - | chr4_1:48495418-48495437 | None:intergenic | 25.0% |
| ! | CATGATGTTATTATTTCAAG+TGG | + | chr4_1:48495424-48495443 | Msa0552060:intron | 25.0% |
| ATAACTGATGAAGAATCCTT+TGG | - | chr4_1:48493344-48493363 | None:intergenic | 30.0% | |
| !! | TTATCCATACCGTTTTTATC+CGG | - | chr4_1:48493515-48493534 | None:intergenic | 30.0% |
| AGAAACCATTACTTCTACTA+TGG | - | chr4_1:48493613-48493632 | None:intergenic | 30.0% | |
| !! | TATTGGTTTCTCATCAGAAA+AGG | + | chr4_1:48493643-48493662 | Msa0552060:CDS | 30.0% |
| TCAATATTAGAATTGAGACC+AGG | - | chr4_1:48493716-48493735 | None:intergenic | 30.0% | |
| !! | GCTTATGGTTTTTAGACATA+CGG | - | chr4_1:48494642-48494661 | None:intergenic | 30.0% |
| ! | TTCATCTTCTTTCTTTTCCT+CGG | - | chr4_1:48494767-48494786 | None:intergenic | 30.0% |
| AAAGAAAGAAGATGAAGAGT+TGG | + | chr4_1:48494771-48494790 | Msa0552060:CDS | 30.0% | |
| TCACTGTAAAACTTGTCAAA+AGG | - | chr4_1:48494844-48494863 | None:intergenic | 30.0% | |
| ! | CAAGTTTTACAGTGATGAAA+CGG | + | chr4_1:48494849-48494868 | Msa0552060:CDS | 30.0% |
| TTATTCCATTAGGCGTATTA+AGG | - | chr4_1:48494903-48494922 | None:intergenic | 30.0% | |
| TGCATTTAGCATGAATAATG+GGG | - | chr4_1:48494954-48494973 | None:intergenic | 30.0% | |
| CATCACAAAATATTCAGACA+GGG | - | chr4_1:48494989-48495008 | None:intergenic | 30.0% | |
| !!! | GAATATTTTGTGATGGATGA+AGG | + | chr4_1:48494994-48495013 | Msa0552060:CDS | 30.0% |
| !!! | ATATTTTGTGATGGATGAAG+GGG | + | chr4_1:48494996-48495015 | Msa0552060:CDS | 30.0% |
| !! | CATTGACTGACATATGTTTT+TGG | + | chr4_1:48495087-48495106 | Msa0552060:intron | 30.0% |
| !! | TTGACTGACATATGTTTTTG+GGG | + | chr4_1:48495089-48495108 | Msa0552060:intron | 30.0% |
| ! | CCAAAAACAAGTTTTACCAA+TGG | - | chr4_1:48495167-48495186 | None:intergenic | 30.0% |
| !! | CCATTGGTAAAACTTGTTTT+TGG | + | chr4_1:48495164-48495183 | Msa0552060:intron | 30.0% |
| !!! | TTGGTAAAACTTGTTTTTGG+GGG | + | chr4_1:48495167-48495186 | Msa0552060:intron | 30.0% |
| AAGTCACCAAAAGAACAATA+TGG | - | chr4_1:48495213-48495232 | None:intergenic | 30.0% | |
| ATAACTGATGAAGAATCCTT+TGG | - | chr4_1:48493344-48493363 | None:intergenic | 30.0% | |
| !! | TTATCCATACCGTTTTTATC+CGG | - | chr4_1:48493515-48493534 | None:intergenic | 30.0% |
| AGAAACCATTACTTCTACTA+TGG | - | chr4_1:48493613-48493632 | None:intergenic | 30.0% | |
| !! | TATTGGTTTCTCATCAGAAA+AGG | + | chr4_1:48493643-48493662 | Msa0552060:CDS | 30.0% |
| TCAATATTAGAATTGAGACC+AGG | - | chr4_1:48493716-48493735 | None:intergenic | 30.0% | |
| !! | GCTTATGGTTTTTAGACATA+CGG | - | chr4_1:48494642-48494661 | None:intergenic | 30.0% |
| ! | TTCATCTTCTTTCTTTTCCT+CGG | - | chr4_1:48494767-48494786 | None:intergenic | 30.0% |
| AAAGAAAGAAGATGAAGAGT+TGG | + | chr4_1:48494771-48494790 | Msa0552060:CDS | 30.0% | |
| TCACTGTAAAACTTGTCAAA+AGG | - | chr4_1:48494844-48494863 | None:intergenic | 30.0% | |
| ! | CAAGTTTTACAGTGATGAAA+CGG | + | chr4_1:48494849-48494868 | Msa0552060:CDS | 30.0% |
| TTATTCCATTAGGCGTATTA+AGG | - | chr4_1:48494903-48494922 | None:intergenic | 30.0% | |
| TGCATTTAGCATGAATAATG+GGG | - | chr4_1:48494954-48494973 | None:intergenic | 30.0% | |
| CATCACAAAATATTCAGACA+GGG | - | chr4_1:48494989-48495008 | None:intergenic | 30.0% | |
| !!! | GAATATTTTGTGATGGATGA+AGG | + | chr4_1:48494994-48495013 | Msa0552060:CDS | 30.0% |
| !!! | ATATTTTGTGATGGATGAAG+GGG | + | chr4_1:48494996-48495015 | Msa0552060:CDS | 30.0% |
| !! | CATTGACTGACATATGTTTT+TGG | + | chr4_1:48495087-48495106 | Msa0552060:intron | 30.0% |
| !! | TTGACTGACATATGTTTTTG+GGG | + | chr4_1:48495089-48495108 | Msa0552060:intron | 30.0% |
| ! | CCAAAAACAAGTTTTACCAA+TGG | - | chr4_1:48495167-48495186 | None:intergenic | 30.0% |
| !! | CCATTGGTAAAACTTGTTTT+TGG | + | chr4_1:48495164-48495183 | Msa0552060:intron | 30.0% |
| !!! | TTGGTAAAACTTGTTTTTGG+GGG | + | chr4_1:48495167-48495186 | Msa0552060:intron | 30.0% |
| AAGTCACCAAAAGAACAATA+TGG | - | chr4_1:48495213-48495232 | None:intergenic | 30.0% | |
| TCATCAAAACATCTCTTTCG+CGG | - | chr4_1:48493377-48493396 | None:intergenic | 35.0% | |
| GAGTTAAGCTATCTCAACAA+CGG | + | chr4_1:48493395-48493414 | Msa0552060:CDS | 35.0% | |
| GTAGACCATAGTAGAAGTAA+TGG | + | chr4_1:48493605-48493624 | Msa0552060:CDS | 35.0% | |
| TCTGATGAGAAACCAATAGT+TGG | - | chr4_1:48493641-48493660 | None:intergenic | 35.0% | |
| GGAAATATAGGAGTTATGCT+GGG | - | chr4_1:48493809-48493828 | None:intergenic | 35.0% | |
| TGGAAATATAGGAGTTATGC+TGG | - | chr4_1:48493810-48493829 | None:intergenic | 35.0% | |
| GGATTCTTCGATGGAAATAT+AGG | - | chr4_1:48493821-48493840 | None:intergenic | 35.0% | |
| AATAGTACCAGTGTGAGTAA+TGG | + | chr4_1:48493872-48493891 | Msa0552060:CDS | 35.0% | |
| AATTAGACCATTACTCACAC+TGG | - | chr4_1:48493882-48493901 | None:intergenic | 35.0% | |
| ! | CTGATACAGGTTTCTTTTAC+TGG | - | chr4_1:48493951-48493970 | None:intergenic | 35.0% |
| AAGAGCTGTTTGCAATTCTT+TGG | - | chr4_1:48494168-48494187 | None:intergenic | 35.0% | |
| AGAATTGCAAACAGCTCTTT+CGG | + | chr4_1:48494169-48494188 | Msa0552060:CDS | 35.0% | |
| ATTGGGATTAGGTAGAATCT+GGG | - | chr4_1:48494248-48494267 | None:intergenic | 35.0% | |
| CGCAATCAAACAAAAATGGA+AGG | - | chr4_1:48494421-48494440 | None:intergenic | 35.0% | |
| GGTACGCAATCAAACAAAAA+TGG | - | chr4_1:48494425-48494444 | None:intergenic | 35.0% | |
| GTTTGATCCAAATCTTCTGA+AGG | + | chr4_1:48494492-48494511 | Msa0552060:CDS | 35.0% | |
| GTATACCTTAATACGCCTAA+TGG | + | chr4_1:48494895-48494914 | Msa0552060:CDS | 35.0% | |
| ! | ATGCCTGTTGTTATTCCATT+AGG | - | chr4_1:48494913-48494932 | None:intergenic | 35.0% |
| TAATGGAATAACAACAGGCA+TGG | + | chr4_1:48494912-48494931 | Msa0552060:CDS | 35.0% | |
| CCATCACAAAATATTCAGAC+AGG | - | chr4_1:48494990-48495009 | None:intergenic | 35.0% | |
| ! | CCTGTCTGAATATTTTGTGA+TGG | + | chr4_1:48494987-48495006 | Msa0552060:CDS | 35.0% |
| !!! | TGACTGACATATGTTTTTGG+GGG | + | chr4_1:48495090-48495109 | Msa0552060:intron | 35.0% |
| AACGTGCGATTACGATATAA+TGG | - | chr4_1:48495256-48495275 | None:intergenic | 35.0% | |
| ! | TATATCGTAATCGCACGTTT+TGG | + | chr4_1:48495257-48495276 | Msa0552060:intron | 35.0% |
| AAAAAACAGGACATTGCATC+TGG | - | chr4_1:48495290-48495309 | None:intergenic | 35.0% | |
| ACATAGAAGACGGAAAAAAC+AGG | - | chr4_1:48495303-48495322 | None:intergenic | 35.0% | |
| TATGTCATGTCTTGCAAATG+AGG | + | chr4_1:48495318-48495337 | Msa0552060:intron | 35.0% | |
| TCTTGCAAATGAGGATATCA+TGG | + | chr4_1:48495327-48495346 | Msa0552060:intron | 35.0% | |
| ! | TTAAAATAGCTTGCAGCACT+AGG | + | chr4_1:48495351-48495370 | Msa0552060:intron | 35.0% |
| ! | TTGTTTTCCTCTTTGTATGC+AGG | + | chr4_1:48495483-48495502 | Msa0552060:intron | 35.0% |
| ! | TGTTTTCCTCTTTGTATGCA+GGG | + | chr4_1:48495484-48495503 | Msa0552060:intron | 35.0% |
| TCATCAAAACATCTCTTTCG+CGG | - | chr4_1:48493377-48493396 | None:intergenic | 35.0% | |
| GAGTTAAGCTATCTCAACAA+CGG | + | chr4_1:48493395-48493414 | Msa0552060:CDS | 35.0% | |
| GTAGACCATAGTAGAAGTAA+TGG | + | chr4_1:48493605-48493624 | Msa0552060:CDS | 35.0% | |
| TCTGATGAGAAACCAATAGT+TGG | - | chr4_1:48493641-48493660 | None:intergenic | 35.0% | |
| GGAAATATAGGAGTTATGCT+GGG | - | chr4_1:48493809-48493828 | None:intergenic | 35.0% | |
| TGGAAATATAGGAGTTATGC+TGG | - | chr4_1:48493810-48493829 | None:intergenic | 35.0% | |
| GGATTCTTCGATGGAAATAT+AGG | - | chr4_1:48493821-48493840 | None:intergenic | 35.0% | |
| AATAGTACCAGTGTGAGTAA+TGG | + | chr4_1:48493872-48493891 | Msa0552060:CDS | 35.0% | |
| AATTAGACCATTACTCACAC+TGG | - | chr4_1:48493882-48493901 | None:intergenic | 35.0% | |
| ! | CTGATACAGGTTTCTTTTAC+TGG | - | chr4_1:48493951-48493970 | None:intergenic | 35.0% |
| AAGAGCTGTTTGCAATTCTT+TGG | - | chr4_1:48494168-48494187 | None:intergenic | 35.0% | |
| AGAATTGCAAACAGCTCTTT+CGG | + | chr4_1:48494169-48494188 | Msa0552060:CDS | 35.0% | |
| ATTGGGATTAGGTAGAATCT+GGG | - | chr4_1:48494248-48494267 | None:intergenic | 35.0% | |
| CGCAATCAAACAAAAATGGA+AGG | - | chr4_1:48494421-48494440 | None:intergenic | 35.0% | |
| GGTACGCAATCAAACAAAAA+TGG | - | chr4_1:48494425-48494444 | None:intergenic | 35.0% | |
| GTTTGATCCAAATCTTCTGA+AGG | + | chr4_1:48494492-48494511 | Msa0552060:CDS | 35.0% | |
| GTATACCTTAATACGCCTAA+TGG | + | chr4_1:48494895-48494914 | Msa0552060:CDS | 35.0% | |
| ! | ATGCCTGTTGTTATTCCATT+AGG | - | chr4_1:48494913-48494932 | None:intergenic | 35.0% |
| TAATGGAATAACAACAGGCA+TGG | + | chr4_1:48494912-48494931 | Msa0552060:CDS | 35.0% | |
| CCATCACAAAATATTCAGAC+AGG | - | chr4_1:48494990-48495009 | None:intergenic | 35.0% | |
| ! | CCTGTCTGAATATTTTGTGA+TGG | + | chr4_1:48494987-48495006 | Msa0552060:CDS | 35.0% |
| !!! | TGACTGACATATGTTTTTGG+GGG | + | chr4_1:48495090-48495109 | Msa0552060:intron | 35.0% |
| AACGTGCGATTACGATATAA+TGG | - | chr4_1:48495256-48495275 | None:intergenic | 35.0% | |
| ! | TATATCGTAATCGCACGTTT+TGG | + | chr4_1:48495257-48495276 | Msa0552060:intron | 35.0% |
| AAAAAACAGGACATTGCATC+TGG | - | chr4_1:48495290-48495309 | None:intergenic | 35.0% | |
| ACATAGAAGACGGAAAAAAC+AGG | - | chr4_1:48495303-48495322 | None:intergenic | 35.0% | |
| TATGTCATGTCTTGCAAATG+AGG | + | chr4_1:48495318-48495337 | Msa0552060:intron | 35.0% | |
| TCTTGCAAATGAGGATATCA+TGG | + | chr4_1:48495327-48495346 | Msa0552060:intron | 35.0% | |
| ! | TTAAAATAGCTTGCAGCACT+AGG | + | chr4_1:48495351-48495370 | Msa0552060:intron | 35.0% |
| ! | TTGTTTTCCTCTTTGTATGC+AGG | + | chr4_1:48495483-48495502 | Msa0552060:intron | 35.0% |
| ! | TGTTTTCCTCTTTGTATGCA+GGG | + | chr4_1:48495484-48495503 | Msa0552060:intron | 35.0% |
| ! | CTTGCTGATGGTTTTCATCT+TGG | + | chr4_1:48493296-48493315 | Msa0552060:CDS | 40.0% |
| ! | CTGATGGTTTTCATCTTGGT+GGG | + | chr4_1:48493300-48493319 | Msa0552060:CDS | 40.0% |
| TTCATCTTGGTGGGAATACT+CGG | + | chr4_1:48493309-48493328 | Msa0552060:CDS | 40.0% | |
| TAGGCATCAATTAGAGCTCT+TGG | - | chr4_1:48493437-48493456 | None:intergenic | 40.0% | |
| ! | AGAGCTCTAATTGATGCCTA+TGG | + | chr4_1:48493437-48493456 | Msa0552060:CDS | 40.0% |
| !! | TTGGCTTTTGTCACTACCAT+AGG | - | chr4_1:48493456-48493475 | None:intergenic | 40.0% |
| GACAAAAGCCAAGAAACTTC+TGG | + | chr4_1:48493464-48493483 | Msa0552060:CDS | 40.0% | |
| ATCATGGCAGAATACTGAAG+AGG | + | chr4_1:48493547-48493566 | Msa0552060:CDS | 40.0% | |
| CTACTATGGTCTACTAGTGT+CGG | - | chr4_1:48493599-48493618 | None:intergenic | 40.0% | |
| GGTTTCTTGCAACCAACTAT+TGG | + | chr4_1:48493626-48493645 | Msa0552060:CDS | 40.0% | |
| AATATAGGAGTTATGCTGGG+AGG | - | chr4_1:48493806-48493825 | None:intergenic | 40.0% | |
| TTCCATCGAAGAATCCTGTT+AGG | + | chr4_1:48493825-48493844 | Msa0552060:CDS | 40.0% | |
| TTCCTAACAGGATTCTTCGA+TGG | - | chr4_1:48493830-48493849 | None:intergenic | 40.0% | |
| ! | GATTCGAATGGATTCCTAAC+AGG | - | chr4_1:48493842-48493861 | None:intergenic | 40.0% |
| TGAGATGGAAAAAACCGGAA+TGG | - | chr4_1:48494034-48494053 | None:intergenic | 40.0% | |
| !!! | ATTCCGGTTTTTTCCATCTC+AGG | + | chr4_1:48494033-48494052 | Msa0552060:CDS | 40.0% |
| GATCCTGAGATGGAAAAAAC+CGG | - | chr4_1:48494039-48494058 | None:intergenic | 40.0% | |
| TAAGTAAATTGTGACGCTGC+TGG | - | chr4_1:48494061-48494080 | None:intergenic | 40.0% | |
| ACTTATAGCACTTCTTTGCC+AGG | + | chr4_1:48494076-48494095 | Msa0552060:CDS | 40.0% | |
| GGCATAACAAGTTGTGCATT+CGG | - | chr4_1:48494130-48494149 | None:intergenic | 40.0% | |
| TTGGGATTAGGTAGAATCTG+GGG | - | chr4_1:48494247-48494266 | None:intergenic | 40.0% | |
| GATTGGGATTAGGTAGAATC+TGG | - | chr4_1:48494249-48494268 | None:intergenic | 40.0% | |
| ATTCTACCTAATCCCAATCC+TGG | + | chr4_1:48494250-48494269 | Msa0552060:CDS | 40.0% | |
| AATATCCAACAGTTGGCTGT+TGG | - | chr4_1:48494291-48494310 | None:intergenic | 40.0% | |
| AGCCAATGACATAACACCTT+GGG | - | chr4_1:48494338-48494357 | None:intergenic | 40.0% | |
| TAGCCAATGACATAACACCT+TGG | - | chr4_1:48494339-48494358 | None:intergenic | 40.0% | |
| TGACGAACCTTCAGAAGATT+TGG | - | chr4_1:48494502-48494521 | None:intergenic | 40.0% | |
| TCTGCAATCAGTGCCTTATA+TGG | + | chr4_1:48494526-48494545 | Msa0552060:CDS | 40.0% | |
| TCTAGGAAGATCGCCATATA+AGG | - | chr4_1:48494542-48494561 | None:intergenic | 40.0% | |
| ! | ATCTTCTTTCTTTTCCTCGG+TGG | - | chr4_1:48494764-48494783 | None:intergenic | 40.0% |
| ! | GTTTTACAGTGATGAAACGG+AGG | + | chr4_1:48494852-48494871 | Msa0552060:CDS | 40.0% |
| ACGCCTAATGGAATAACAAC+AGG | + | chr4_1:48494907-48494926 | Msa0552060:CDS | 40.0% | |
| ACAATATGGCTGCTGAATTC+TGG | - | chr4_1:48495199-48495218 | None:intergenic | 40.0% | |
| ! | CAGCAGCCATATTGTTCTTT+TGG | + | chr4_1:48495204-48495223 | Msa0552060:intron | 40.0% |
| GCAAGACATGACATAGAAGA+CGG | - | chr4_1:48495313-48495332 | None:intergenic | 40.0% | |
| GAAGTTGGCAGCCATTAAAT+AGG | - | chr4_1:48495403-48495422 | None:intergenic | 40.0% | |
| ! | AGCTCCACATTCGTTTTCTT+TGG | - | chr4_1:48495528-48495547 | None:intergenic | 40.0% |
| ! | CTTGCTGATGGTTTTCATCT+TGG | + | chr4_1:48493296-48493315 | Msa0552060:CDS | 40.0% |
| ! | CTGATGGTTTTCATCTTGGT+GGG | + | chr4_1:48493300-48493319 | Msa0552060:CDS | 40.0% |
| TTCATCTTGGTGGGAATACT+CGG | + | chr4_1:48493309-48493328 | Msa0552060:CDS | 40.0% | |
| TAGGCATCAATTAGAGCTCT+TGG | - | chr4_1:48493437-48493456 | None:intergenic | 40.0% | |
| ! | AGAGCTCTAATTGATGCCTA+TGG | + | chr4_1:48493437-48493456 | Msa0552060:CDS | 40.0% |
| !! | TTGGCTTTTGTCACTACCAT+AGG | - | chr4_1:48493456-48493475 | None:intergenic | 40.0% |
| GACAAAAGCCAAGAAACTTC+TGG | + | chr4_1:48493464-48493483 | Msa0552060:CDS | 40.0% | |
| ATCATGGCAGAATACTGAAG+AGG | + | chr4_1:48493547-48493566 | Msa0552060:CDS | 40.0% | |
| CTACTATGGTCTACTAGTGT+CGG | - | chr4_1:48493599-48493618 | None:intergenic | 40.0% | |
| GGTTTCTTGCAACCAACTAT+TGG | + | chr4_1:48493626-48493645 | Msa0552060:CDS | 40.0% | |
| AATATAGGAGTTATGCTGGG+AGG | - | chr4_1:48493806-48493825 | None:intergenic | 40.0% | |
| TTCCATCGAAGAATCCTGTT+AGG | + | chr4_1:48493825-48493844 | Msa0552060:CDS | 40.0% | |
| TTCCTAACAGGATTCTTCGA+TGG | - | chr4_1:48493830-48493849 | None:intergenic | 40.0% | |
| ! | GATTCGAATGGATTCCTAAC+AGG | - | chr4_1:48493842-48493861 | None:intergenic | 40.0% |
| TGAGATGGAAAAAACCGGAA+TGG | - | chr4_1:48494034-48494053 | None:intergenic | 40.0% | |
| !!! | ATTCCGGTTTTTTCCATCTC+AGG | + | chr4_1:48494033-48494052 | Msa0552060:CDS | 40.0% |
| GATCCTGAGATGGAAAAAAC+CGG | - | chr4_1:48494039-48494058 | None:intergenic | 40.0% | |
| TAAGTAAATTGTGACGCTGC+TGG | - | chr4_1:48494061-48494080 | None:intergenic | 40.0% | |
| ACTTATAGCACTTCTTTGCC+AGG | + | chr4_1:48494076-48494095 | Msa0552060:CDS | 40.0% | |
| GGCATAACAAGTTGTGCATT+CGG | - | chr4_1:48494130-48494149 | None:intergenic | 40.0% | |
| TTGGGATTAGGTAGAATCTG+GGG | - | chr4_1:48494247-48494266 | None:intergenic | 40.0% | |
| GATTGGGATTAGGTAGAATC+TGG | - | chr4_1:48494249-48494268 | None:intergenic | 40.0% | |
| ATTCTACCTAATCCCAATCC+TGG | + | chr4_1:48494250-48494269 | Msa0552060:CDS | 40.0% | |
| AATATCCAACAGTTGGCTGT+TGG | - | chr4_1:48494291-48494310 | None:intergenic | 40.0% | |
| AGCCAATGACATAACACCTT+GGG | - | chr4_1:48494338-48494357 | None:intergenic | 40.0% | |
| TAGCCAATGACATAACACCT+TGG | - | chr4_1:48494339-48494358 | None:intergenic | 40.0% | |
| TGACGAACCTTCAGAAGATT+TGG | - | chr4_1:48494502-48494521 | None:intergenic | 40.0% | |
| TCTGCAATCAGTGCCTTATA+TGG | + | chr4_1:48494526-48494545 | Msa0552060:CDS | 40.0% | |
| TCTAGGAAGATCGCCATATA+AGG | - | chr4_1:48494542-48494561 | None:intergenic | 40.0% | |
| ! | ATCTTCTTTCTTTTCCTCGG+TGG | - | chr4_1:48494764-48494783 | None:intergenic | 40.0% |
| ! | GTTTTACAGTGATGAAACGG+AGG | + | chr4_1:48494852-48494871 | Msa0552060:CDS | 40.0% |
| ACGCCTAATGGAATAACAAC+AGG | + | chr4_1:48494907-48494926 | Msa0552060:CDS | 40.0% | |
| ACAATATGGCTGCTGAATTC+TGG | - | chr4_1:48495199-48495218 | None:intergenic | 40.0% | |
| ! | CAGCAGCCATATTGTTCTTT+TGG | + | chr4_1:48495204-48495223 | Msa0552060:intron | 40.0% |
| GCAAGACATGACATAGAAGA+CGG | - | chr4_1:48495313-48495332 | None:intergenic | 40.0% | |
| GAAGTTGGCAGCCATTAAAT+AGG | - | chr4_1:48495403-48495422 | None:intergenic | 40.0% | |
| ! | AGCTCCACATTCGTTTTCTT+TGG | - | chr4_1:48495528-48495547 | None:intergenic | 40.0% |
| ! | GCTGATGGTTTTCATCTTGG+TGG | + | chr4_1:48493299-48493318 | Msa0552060:CDS | 45.0% |
| TACTCGGAGCGAAATACCAA+AGG | + | chr4_1:48493325-48493344 | Msa0552060:CDS | 45.0% | |
| !! | AGAGCTCTTGGATTTTGACG+CGG | - | chr4_1:48493425-48493444 | None:intergenic | 45.0% |
| GCTTACTGCCAGAAGTTTCT+TGG | - | chr4_1:48493475-48493494 | None:intergenic | 45.0% | |
| TGGCAGTAAGCCTTTGTTAG+TGG | + | chr4_1:48493484-48493503 | Msa0552060:CDS | 45.0% | |
| ATGGCAGAATACTGAAGAGG+AGG | + | chr4_1:48493550-48493569 | Msa0552060:CDS | 45.0% | |
| TGAAGAGGAGGAGTTCGATT+GGG | + | chr4_1:48493562-48493581 | Msa0552060:CDS | 45.0% | |
| ! | AGTAGTTGCACTTGCTGCAA+CGG | - | chr4_1:48493675-48493694 | None:intergenic | 45.0% |
| TGCAACTACTTCAGCGTCAA+GGG | + | chr4_1:48493685-48493704 | Msa0552060:CDS | 45.0% | |
| TCAAAAGTTGCTGGCAGAAC+TGG | - | chr4_1:48493749-48493768 | None:intergenic | 45.0% | |
| !!! | TGCCAGCAACTTTTGAAACG+AGG | + | chr4_1:48493753-48493772 | Msa0552060:CDS | 45.0% |
| CCATGTTCATGCACAGGAAA+AGG | - | chr4_1:48493911-48493930 | None:intergenic | 45.0% | |
| ! | CCTTTTCCTGTGCATGAACA+TGG | + | chr4_1:48493908-48493927 | Msa0552060:CDS | 45.0% |
| TCAACACCATGTTCATGCAC+AGG | - | chr4_1:48493917-48493936 | None:intergenic | 45.0% | |
| GCTGATTAGGCAACTGATAC+AGG | - | chr4_1:48493964-48493983 | None:intergenic | 45.0% | |
| GGGTTAGATGAAATCAGACC+GGG | - | chr4_1:48493989-48494008 | None:intergenic | 45.0% | |
| ! | CGGGTTAGATGAAATCAGAC+CGG | - | chr4_1:48493990-48494009 | None:intergenic | 45.0% |
| TCATCTAACCCGCATAACAG+TGG | + | chr4_1:48493998-48494017 | Msa0552060:CDS | 45.0% | |
| GATGGAAAAAACCGGAATGG+TGG | - | chr4_1:48494031-48494050 | None:intergenic | 45.0% | |
| AACAAGTTGTGCATTCGGCA+GGG | - | chr4_1:48494125-48494144 | None:intergenic | 45.0% | |
| TAACAAGTTGTGCATTCGGC+AGG | - | chr4_1:48494126-48494145 | None:intergenic | 45.0% | |
| CTGTTTGCAATTCTTTGGCC+TGG | - | chr4_1:48494163-48494182 | None:intergenic | 45.0% | |
| AAACAGCTCTTTCGGTTTCC+TGG | + | chr4_1:48494177-48494196 | Msa0552060:CDS | 45.0% | |
| AACAGCTCTTTCGGTTTCCT+GGG | + | chr4_1:48494178-48494197 | Msa0552060:CDS | 45.0% | |
| ATTAGTTCACTCATGGCCCA+AGG | + | chr4_1:48494319-48494338 | Msa0552060:CDS | 45.0% | |
| AGATTTAGTTACCAGCGCAG+CGG | - | chr4_1:48494368-48494387 | None:intergenic | 45.0% | |
| GCTCATCTTGGGACTTGAAT+CGG | - | chr4_1:48494585-48494604 | None:intergenic | 45.0% | |
| GTGACTTCTGTGCTCATCTT+GGG | - | chr4_1:48494596-48494615 | None:intergenic | 45.0% | |
| TGTGACTTCTGTGCTCATCT+TGG | - | chr4_1:48494597-48494616 | None:intergenic | 45.0% | |
| AGATGAGCACAGAAGTCACA+TGG | + | chr4_1:48494597-48494616 | Msa0552060:CDS | 45.0% | |
| AGCACAGAAGTCACATGGAT+TGG | + | chr4_1:48494602-48494621 | Msa0552060:CDS | 45.0% | |
| ! | TTTCTTTTCCTCGGTGGTCT+CGG | - | chr4_1:48494758-48494777 | None:intergenic | 45.0% |
| ACAGTGATGAAACGGAGGAT+TGG | + | chr4_1:48494857-48494876 | Msa0552060:CDS | 45.0% | |
| ACGGAGGATTGGATGTATAG+AGG | + | chr4_1:48494868-48494887 | Msa0552060:CDS | 45.0% | |
| GAATAACAACAGGCATGGAC+AGG | + | chr4_1:48494917-48494936 | Msa0552060:CDS | 45.0% | |
| TCTTTGGCTGCCTTCTTCAT+AGG | - | chr4_1:48495512-48495531 | None:intergenic | 45.0% | |
| GCAGCCAAAGAAAACGAATG+TGG | + | chr4_1:48495521-48495540 | Msa0552060:CDS | 45.0% | |
| ! | GCTGATGGTTTTCATCTTGG+TGG | + | chr4_1:48493299-48493318 | Msa0552060:CDS | 45.0% |
| TACTCGGAGCGAAATACCAA+AGG | + | chr4_1:48493325-48493344 | Msa0552060:CDS | 45.0% | |
| !! | AGAGCTCTTGGATTTTGACG+CGG | - | chr4_1:48493425-48493444 | None:intergenic | 45.0% |
| GCTTACTGCCAGAAGTTTCT+TGG | - | chr4_1:48493475-48493494 | None:intergenic | 45.0% | |
| TGGCAGTAAGCCTTTGTTAG+TGG | + | chr4_1:48493484-48493503 | Msa0552060:CDS | 45.0% | |
| ATGGCAGAATACTGAAGAGG+AGG | + | chr4_1:48493550-48493569 | Msa0552060:CDS | 45.0% | |
| TGAAGAGGAGGAGTTCGATT+GGG | + | chr4_1:48493562-48493581 | Msa0552060:CDS | 45.0% | |
| ! | AGTAGTTGCACTTGCTGCAA+CGG | - | chr4_1:48493675-48493694 | None:intergenic | 45.0% |
| TGCAACTACTTCAGCGTCAA+GGG | + | chr4_1:48493685-48493704 | Msa0552060:CDS | 45.0% | |
| TCAAAAGTTGCTGGCAGAAC+TGG | - | chr4_1:48493749-48493768 | None:intergenic | 45.0% | |
| !!! | TGCCAGCAACTTTTGAAACG+AGG | + | chr4_1:48493753-48493772 | Msa0552060:CDS | 45.0% |
| CCATGTTCATGCACAGGAAA+AGG | - | chr4_1:48493911-48493930 | None:intergenic | 45.0% | |
| ! | CCTTTTCCTGTGCATGAACA+TGG | + | chr4_1:48493908-48493927 | Msa0552060:CDS | 45.0% |
| TCAACACCATGTTCATGCAC+AGG | - | chr4_1:48493917-48493936 | None:intergenic | 45.0% | |
| GCTGATTAGGCAACTGATAC+AGG | - | chr4_1:48493964-48493983 | None:intergenic | 45.0% | |
| GGGTTAGATGAAATCAGACC+GGG | - | chr4_1:48493989-48494008 | None:intergenic | 45.0% | |
| ! | CGGGTTAGATGAAATCAGAC+CGG | - | chr4_1:48493990-48494009 | None:intergenic | 45.0% |
| TCATCTAACCCGCATAACAG+TGG | + | chr4_1:48493998-48494017 | Msa0552060:CDS | 45.0% | |
| GATGGAAAAAACCGGAATGG+TGG | - | chr4_1:48494031-48494050 | None:intergenic | 45.0% | |
| AACAAGTTGTGCATTCGGCA+GGG | - | chr4_1:48494125-48494144 | None:intergenic | 45.0% | |
| TAACAAGTTGTGCATTCGGC+AGG | - | chr4_1:48494126-48494145 | None:intergenic | 45.0% | |
| CTGTTTGCAATTCTTTGGCC+TGG | - | chr4_1:48494163-48494182 | None:intergenic | 45.0% | |
| AAACAGCTCTTTCGGTTTCC+TGG | + | chr4_1:48494177-48494196 | Msa0552060:CDS | 45.0% | |
| AACAGCTCTTTCGGTTTCCT+GGG | + | chr4_1:48494178-48494197 | Msa0552060:CDS | 45.0% | |
| ATTAGTTCACTCATGGCCCA+AGG | + | chr4_1:48494319-48494338 | Msa0552060:CDS | 45.0% | |
| AGATTTAGTTACCAGCGCAG+CGG | - | chr4_1:48494368-48494387 | None:intergenic | 45.0% | |
| GCTCATCTTGGGACTTGAAT+CGG | - | chr4_1:48494585-48494604 | None:intergenic | 45.0% | |
| GTGACTTCTGTGCTCATCTT+GGG | - | chr4_1:48494596-48494615 | None:intergenic | 45.0% | |
| TGTGACTTCTGTGCTCATCT+TGG | - | chr4_1:48494597-48494616 | None:intergenic | 45.0% | |
| AGATGAGCACAGAAGTCACA+TGG | + | chr4_1:48494597-48494616 | Msa0552060:CDS | 45.0% | |
| AGCACAGAAGTCACATGGAT+TGG | + | chr4_1:48494602-48494621 | Msa0552060:CDS | 45.0% | |
| ! | TTTCTTTTCCTCGGTGGTCT+CGG | - | chr4_1:48494758-48494777 | None:intergenic | 45.0% |
| ACAGTGATGAAACGGAGGAT+TGG | + | chr4_1:48494857-48494876 | Msa0552060:CDS | 45.0% | |
| ACGGAGGATTGGATGTATAG+AGG | + | chr4_1:48494868-48494887 | Msa0552060:CDS | 45.0% | |
| GAATAACAACAGGCATGGAC+AGG | + | chr4_1:48494917-48494936 | Msa0552060:CDS | 45.0% | |
| TCTTTGGCTGCCTTCTTCAT+AGG | - | chr4_1:48495512-48495531 | None:intergenic | 45.0% | |
| GCAGCCAAAGAAAACGAATG+TGG | + | chr4_1:48495521-48495540 | Msa0552060:CDS | 45.0% | |
| GTGGAGCGACCGGATAAAAA+CGG | + | chr4_1:48493503-48493522 | Msa0552060:CDS | 50.0% | |
| GCGACCGGATAAAAACGGTA+TGG | + | chr4_1:48493508-48493527 | Msa0552060:CDS | 50.0% | |
| CTGAAGAGGAGGAGTTCGAT+TGG | + | chr4_1:48493561-48493580 | Msa0552060:CDS | 50.0% | |
| GTGCAACTACTTCAGCGTCA+AGG | + | chr4_1:48493684-48493703 | Msa0552060:CDS | 50.0% | |
| AAAGTTGCTGGCAGAACTGG+TGG | - | chr4_1:48493746-48493765 | None:intergenic | 50.0% | |
| CGCCTCGTTTCAAAAGTTGC+TGG | - | chr4_1:48493758-48493777 | None:intergenic | 50.0% | |
| ACGCGGAGCATGCACATTTA+TGG | - | chr4_1:48493783-48493802 | None:intergenic | 50.0% | |
| CAGTTGCCTAATCAGCTACC+CGG | + | chr4_1:48493968-48493987 | Msa0552060:CDS | 50.0% | |
| ATCAGACCGGGTAGCTGATT+AGG | - | chr4_1:48493977-48493996 | None:intergenic | 50.0% | |
| GCGTTTGTCCACTGTTATGC+GGG | - | chr4_1:48494009-48494028 | None:intergenic | 50.0% | |
| GGCGTTTGTCCACTGTTATG+CGG | - | chr4_1:48494010-48494029 | None:intergenic | 50.0% | |
| CTCATAGCAGCACAATGTCC+TGG | - | chr4_1:48494097-48494116 | None:intergenic | 50.0% | |
| ACAAGTTGTGCATTCGGCAG+GGG | - | chr4_1:48494124-48494143 | None:intergenic | 50.0% | |
| ACAGCTCTTTCGGTTTCCTG+GGG | + | chr4_1:48494179-48494198 | Msa0552060:CDS | 50.0% | |
| ! | GAATCTGGGGTAGAGCATGT+GGG | - | chr4_1:48494234-48494253 | None:intergenic | 50.0% |
| ! | AGAATCTGGGGTAGAGCATG+TGG | - | chr4_1:48494235-48494254 | None:intergenic | 50.0% |
| GAAGGACCAGGATTGGGATT+AGG | - | chr4_1:48494259-48494278 | None:intergenic | 50.0% | |
| GACACAGAAGGACCAGGATT+GGG | - | chr4_1:48494265-48494284 | None:intergenic | 50.0% | |
| TGACACAGAAGGACCAGGAT+TGG | - | chr4_1:48494266-48494285 | None:intergenic | 50.0% | |
| TCAAGCCAACAGCCAACTGT+TGG | + | chr4_1:48494283-48494302 | Msa0552060:CDS | 50.0% | |
| ! | GGCCCAAGGTGTTATGTCAT+TGG | + | chr4_1:48494333-48494352 | Msa0552060:CDS | 50.0% |
| CCACAAGTTGTGCACTGTCT+AGG | - | chr4_1:48494559-48494578 | None:intergenic | 50.0% | |
| CCTAGACAGTGCACAACTTG+TGG | + | chr4_1:48494556-48494575 | Msa0552060:CDS | 50.0% | |
| CATCTTGGGACTTGAATCGG+AGG | - | chr4_1:48494582-48494601 | None:intergenic | 50.0% | |
| CTCACAAACCACTTGCGAGA+GGG | - | chr4_1:48494670-48494689 | None:intergenic | 50.0% | |
| ACTCACAAACCACTTGCGAG+AGG | - | chr4_1:48494671-48494690 | None:intergenic | 50.0% | |
| GGTTTGTGAGTGAGACGATG+TGG | + | chr4_1:48494680-48494699 | Msa0552060:CDS | 50.0% | |
| AGTGAGACGATGTGGCTTAG+TGG | + | chr4_1:48494688-48494707 | Msa0552060:CDS | 50.0% | |
| !! | CTTAGTGGTGCAGAGGCATT+GGG | + | chr4_1:48494703-48494722 | Msa0552060:CDS | 50.0% |
| GTCTCGGTTGGCAAAAAACC+TGG | - | chr4_1:48494742-48494761 | None:intergenic | 50.0% | |
| ! | ATAGCTTGCAGCACTAGGCA+TGG | + | chr4_1:48495356-48495375 | Msa0552060:intron | 50.0% |
| TAGGTGCCCTGCATACAAAG+AGG | - | chr4_1:48495493-48495512 | None:intergenic | 50.0% | |
| ! | ATGCAGGGCACCTATGAAGA+AGG | + | chr4_1:48495499-48495518 | Msa0552060:intron | 50.0% |
| GTGGAGCGACCGGATAAAAA+CGG | + | chr4_1:48493503-48493522 | Msa0552060:CDS | 50.0% | |
| GCGACCGGATAAAAACGGTA+TGG | + | chr4_1:48493508-48493527 | Msa0552060:CDS | 50.0% | |
| CTGAAGAGGAGGAGTTCGAT+TGG | + | chr4_1:48493561-48493580 | Msa0552060:CDS | 50.0% | |
| GTGCAACTACTTCAGCGTCA+AGG | + | chr4_1:48493684-48493703 | Msa0552060:CDS | 50.0% | |
| AAAGTTGCTGGCAGAACTGG+TGG | - | chr4_1:48493746-48493765 | None:intergenic | 50.0% | |
| CGCCTCGTTTCAAAAGTTGC+TGG | - | chr4_1:48493758-48493777 | None:intergenic | 50.0% | |
| ACGCGGAGCATGCACATTTA+TGG | - | chr4_1:48493783-48493802 | None:intergenic | 50.0% | |
| CAGTTGCCTAATCAGCTACC+CGG | + | chr4_1:48493968-48493987 | Msa0552060:CDS | 50.0% | |
| ATCAGACCGGGTAGCTGATT+AGG | - | chr4_1:48493977-48493996 | None:intergenic | 50.0% | |
| GCGTTTGTCCACTGTTATGC+GGG | - | chr4_1:48494009-48494028 | None:intergenic | 50.0% | |
| GGCGTTTGTCCACTGTTATG+CGG | - | chr4_1:48494010-48494029 | None:intergenic | 50.0% | |
| CTCATAGCAGCACAATGTCC+TGG | - | chr4_1:48494097-48494116 | None:intergenic | 50.0% | |
| ACAAGTTGTGCATTCGGCAG+GGG | - | chr4_1:48494124-48494143 | None:intergenic | 50.0% | |
| ACAGCTCTTTCGGTTTCCTG+GGG | + | chr4_1:48494179-48494198 | Msa0552060:CDS | 50.0% | |
| ! | GAATCTGGGGTAGAGCATGT+GGG | - | chr4_1:48494234-48494253 | None:intergenic | 50.0% |
| ! | AGAATCTGGGGTAGAGCATG+TGG | - | chr4_1:48494235-48494254 | None:intergenic | 50.0% |
| GAAGGACCAGGATTGGGATT+AGG | - | chr4_1:48494259-48494278 | None:intergenic | 50.0% | |
| GACACAGAAGGACCAGGATT+GGG | - | chr4_1:48494265-48494284 | None:intergenic | 50.0% | |
| TGACACAGAAGGACCAGGAT+TGG | - | chr4_1:48494266-48494285 | None:intergenic | 50.0% | |
| TCAAGCCAACAGCCAACTGT+TGG | + | chr4_1:48494283-48494302 | Msa0552060:CDS | 50.0% | |
| ! | GGCCCAAGGTGTTATGTCAT+TGG | + | chr4_1:48494333-48494352 | Msa0552060:CDS | 50.0% |
| CCACAAGTTGTGCACTGTCT+AGG | - | chr4_1:48494559-48494578 | None:intergenic | 50.0% | |
| CCTAGACAGTGCACAACTTG+TGG | + | chr4_1:48494556-48494575 | Msa0552060:CDS | 50.0% | |
| CATCTTGGGACTTGAATCGG+AGG | - | chr4_1:48494582-48494601 | None:intergenic | 50.0% | |
| CTCACAAACCACTTGCGAGA+GGG | - | chr4_1:48494670-48494689 | None:intergenic | 50.0% | |
| ACTCACAAACCACTTGCGAG+AGG | - | chr4_1:48494671-48494690 | None:intergenic | 50.0% | |
| GGTTTGTGAGTGAGACGATG+TGG | + | chr4_1:48494680-48494699 | Msa0552060:CDS | 50.0% | |
| AGTGAGACGATGTGGCTTAG+TGG | + | chr4_1:48494688-48494707 | Msa0552060:CDS | 50.0% | |
| !! | CTTAGTGGTGCAGAGGCATT+GGG | + | chr4_1:48494703-48494722 | Msa0552060:CDS | 50.0% |
| GTCTCGGTTGGCAAAAAACC+TGG | - | chr4_1:48494742-48494761 | None:intergenic | 50.0% | |
| ! | ATAGCTTGCAGCACTAGGCA+TGG | + | chr4_1:48495356-48495375 | Msa0552060:intron | 50.0% |
| TAGGTGCCCTGCATACAAAG+AGG | - | chr4_1:48495493-48495512 | None:intergenic | 50.0% | |
| ! | ATGCAGGGCACCTATGAAGA+AGG | + | chr4_1:48495499-48495518 | Msa0552060:intron | 50.0% |
| GCCTTTGTTAGTGGAGCGAC+CGG | + | chr4_1:48493493-48493512 | Msa0552060:CDS | 55.0% | |
| TCCGGTCGCTCCACTAACAA+AGG | - | chr4_1:48493497-48493516 | None:intergenic | 55.0% | |
| !! | TCAGCGTCAAGGGTGTTTCC+TGG | + | chr4_1:48493695-48493714 | Msa0552060:CDS | 55.0% |
| TTGCTGGCAGAACTGGTGGA+CGG | - | chr4_1:48493742-48493761 | None:intergenic | 55.0% | |
| GTGGACAAACGCCACCATTC+CGG | + | chr4_1:48494017-48494036 | Msa0552060:CDS | 55.0% | |
| CAAGTTGTGCATTCGGCAGG+GGG | - | chr4_1:48494123-48494142 | None:intergenic | 55.0% | |
| ! | GTTATGCCACTTCCTTCGCC+AGG | + | chr4_1:48494142-48494161 | Msa0552060:CDS | 55.0% |
| GCAATTCTTTGGCCTGGCGA+AGG | - | chr4_1:48494157-48494176 | None:intergenic | 55.0% | |
| CAGCTCTTTCGGTTTCCTGG+GGG | + | chr4_1:48494180-48494199 | Msa0552060:CDS | 55.0% | |
| AGCTCTTTCGGTTTCCTGGG+GGG | + | chr4_1:48494181-48494200 | Msa0552060:CDS | 55.0% | |
| TTGCCACCTTTACCTCCAGC+TGG | + | chr4_1:48494208-48494227 | Msa0552060:CDS | 55.0% | |
| TGGCTTGACACAGAAGGACC+AGG | - | chr4_1:48494271-48494290 | None:intergenic | 55.0% | |
| !! | GGCTGTTGGCTTGACACAGA+AGG | - | chr4_1:48494277-48494296 | None:intergenic | 55.0% |
| TGCGAGAGGGCTTCTGCTTA+TGG | - | chr4_1:48494657-48494676 | None:intergenic | 55.0% | |
| GATGTGGCTTAGTGGTGCAG+AGG | + | chr4_1:48494696-48494715 | Msa0552060:CDS | 55.0% | |
| ! | GCTTAGTGGTGCAGAGGCAT+TGG | + | chr4_1:48494702-48494721 | Msa0552060:CDS | 55.0% |
| TTGGGAGCTGAATCAGCTCC+AGG | + | chr4_1:48494721-48494740 | Msa0552060:CDS | 55.0% | |
| ! | TTTTCCTCGGTGGTCTCGGT+TGG | - | chr4_1:48494754-48494773 | None:intergenic | 55.0% |
| GCCTTTGTTAGTGGAGCGAC+CGG | + | chr4_1:48493493-48493512 | Msa0552060:CDS | 55.0% | |
| TCCGGTCGCTCCACTAACAA+AGG | - | chr4_1:48493497-48493516 | None:intergenic | 55.0% | |
| !! | TCAGCGTCAAGGGTGTTTCC+TGG | + | chr4_1:48493695-48493714 | Msa0552060:CDS | 55.0% |
| TTGCTGGCAGAACTGGTGGA+CGG | - | chr4_1:48493742-48493761 | None:intergenic | 55.0% | |
| GTGGACAAACGCCACCATTC+CGG | + | chr4_1:48494017-48494036 | Msa0552060:CDS | 55.0% | |
| CAAGTTGTGCATTCGGCAGG+GGG | - | chr4_1:48494123-48494142 | None:intergenic | 55.0% | |
| ! | GTTATGCCACTTCCTTCGCC+AGG | + | chr4_1:48494142-48494161 | Msa0552060:CDS | 55.0% |
| GCAATTCTTTGGCCTGGCGA+AGG | - | chr4_1:48494157-48494176 | None:intergenic | 55.0% | |
| CAGCTCTTTCGGTTTCCTGG+GGG | + | chr4_1:48494180-48494199 | Msa0552060:CDS | 55.0% | |
| AGCTCTTTCGGTTTCCTGGG+GGG | + | chr4_1:48494181-48494200 | Msa0552060:CDS | 55.0% | |
| TTGCCACCTTTACCTCCAGC+TGG | + | chr4_1:48494208-48494227 | Msa0552060:CDS | 55.0% | |
| TGGCTTGACACAGAAGGACC+AGG | - | chr4_1:48494271-48494290 | None:intergenic | 55.0% | |
| !! | GGCTGTTGGCTTGACACAGA+AGG | - | chr4_1:48494277-48494296 | None:intergenic | 55.0% |
| TGCGAGAGGGCTTCTGCTTA+TGG | - | chr4_1:48494657-48494676 | None:intergenic | 55.0% | |
| GATGTGGCTTAGTGGTGCAG+AGG | + | chr4_1:48494696-48494715 | Msa0552060:CDS | 55.0% | |
| ! | GCTTAGTGGTGCAGAGGCAT+TGG | + | chr4_1:48494702-48494721 | Msa0552060:CDS | 55.0% |
| TTGGGAGCTGAATCAGCTCC+AGG | + | chr4_1:48494721-48494740 | Msa0552060:CDS | 55.0% | |
| ! | TTTTCCTCGGTGGTCTCGGT+TGG | - | chr4_1:48494754-48494773 | None:intergenic | 55.0% |
| GGAGTTATGCTGGGAGGACG+CGG | - | chr4_1:48493800-48493819 | None:intergenic | 60.0% | |
| GACGCTGCTGGATCCTGAGA+TGG | - | chr4_1:48494049-48494068 | None:intergenic | 60.0% | |
| CTTTGGCCTGGCGAAGGAAG+TGG | - | chr4_1:48494151-48494170 | None:intergenic | 60.0% | |
| TGTGGGCCAGCTGGAGGTAA+AGG | - | chr4_1:48494217-48494236 | None:intergenic | 60.0% | |
| AGCAGAAGCCCTCTCGCAAG+TGG | + | chr4_1:48494659-48494678 | Msa0552060:CDS | 60.0% | |
| TTTGCCAACCGAGACCACCG+AGG | + | chr4_1:48494747-48494766 | Msa0552060:CDS | 60.0% | |
| GGCATGGACAGGTCGCAGTT+AGG | + | chr4_1:48494928-48494947 | Msa0552060:CDS | 60.0% | |
| GGAGTTATGCTGGGAGGACG+CGG | - | chr4_1:48493800-48493819 | None:intergenic | 60.0% | |
| GACGCTGCTGGATCCTGAGA+TGG | - | chr4_1:48494049-48494068 | None:intergenic | 60.0% | |
| CTTTGGCCTGGCGAAGGAAG+TGG | - | chr4_1:48494151-48494170 | None:intergenic | 60.0% | |
| TGTGGGCCAGCTGGAGGTAA+AGG | - | chr4_1:48494217-48494236 | None:intergenic | 60.0% | |
| AGCAGAAGCCCTCTCGCAAG+TGG | + | chr4_1:48494659-48494678 | Msa0552060:CDS | 60.0% | |
| TTTGCCAACCGAGACCACCG+AGG | + | chr4_1:48494747-48494766 | Msa0552060:CDS | 60.0% | |
| GGCATGGACAGGTCGCAGTT+AGG | + | chr4_1:48494928-48494947 | Msa0552060:CDS | 60.0% | |
| AAGGTGGCAAAGCTCCCCCC+AGG | - | chr4_1:48494198-48494217 | None:intergenic | 65.0% | |
| GGGCCAGCTGGAGGTAAAGG+TGG | - | chr4_1:48494214-48494233 | None:intergenic | 65.0% | |
| AGAGCATGTGGGCCAGCTGG+AGG | - | chr4_1:48494223-48494242 | None:intergenic | 65.0% | |
| GGTAGAGCATGTGGGCCAGC+TGG | - | chr4_1:48494226-48494245 | None:intergenic | 65.0% | |
| GGCTAATCAAGCCGCTGCGC+TGG | + | chr4_1:48494354-48494373 | Msa0552060:CDS | 65.0% | |
| AAGGTGGCAAAGCTCCCCCC+AGG | - | chr4_1:48494198-48494217 | None:intergenic | 65.0% | |
| GGGCCAGCTGGAGGTAAAGG+TGG | - | chr4_1:48494214-48494233 | None:intergenic | 65.0% | |
| AGAGCATGTGGGCCAGCTGG+AGG | - | chr4_1:48494223-48494242 | None:intergenic | 65.0% | |
| GGTAGAGCATGTGGGCCAGC+TGG | - | chr4_1:48494226-48494245 | None:intergenic | 65.0% | |
| GGCTAATCAAGCCGCTGCGC+TGG | + | chr4_1:48494354-48494373 | Msa0552060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 48493293 | 48495549 | 48493293 | ID=Msa0552060;Name=Msa0552060 |
| chr4_1 | mRNA | 48493293 | 48495549 | 48493293 | ID=Msa0552060-mRNA-1;Parent=Msa0552060;Name=Msa0552060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.33|1|1|1|3|0|556 |
| chr4_1 | exon | 48493293 | 48494375 | 48493293 | ID=Msa0552060-mRNA-1:exon:13259;Parent=Msa0552060-mRNA-1 |
| chr4_1 | exon | 48494475 | 48495017 | 48494475 | ID=Msa0552060-mRNA-1:exon:13260;Parent=Msa0552060-mRNA-1 |
| chr4_1 | exon | 48495505 | 48495549 | 48495505 | ID=Msa0552060-mRNA-1:exon:13261;Parent=Msa0552060-mRNA-1 |
| chr4_1 | CDS | 48493293 | 48494375 | 48493293 | ID=Msa0552060-mRNA-1:cds;Parent=Msa0552060-mRNA-1 |
| chr4_1 | CDS | 48494475 | 48495017 | 48494475 | ID=Msa0552060-mRNA-1:cds;Parent=Msa0552060-mRNA-1 |
| chr4_1 | CDS | 48495505 | 48495549 | 48495505 | ID=Msa0552060-mRNA-1:cds;Parent=Msa0552060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
