Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552170 | XP_003607180.1 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552170 | sp|Q8GTS2|BZP23_ARATH | 62.069 | 261 | 79 | 6 | 1 | 260 | 1 | 242 | 1.99e-107 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552170 | B7FIL7 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 536 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0552170 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552170 | MtrunA17_Chr4g0036971 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 536 |
| Msa0552170 | MtrunA17_Chr3g0090531 | 40.594 | 202 | 96 | 4 | 1 | 197 | 1 | 183 | 2.09e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552170 | AT2G16770.2 | 62.069 | 261 | 79 | 6 | 1 | 260 | 1 | 242 | 2.02e-108 | 313 |
| Msa0552170 | AT2G16770.1 | 62.069 | 261 | 79 | 6 | 1 | 260 | 1 | 242 | 2.02e-108 | 313 |
| Msa0552170 | AT4G35040.1 | 65.152 | 264 | 76 | 8 | 1 | 259 | 1 | 253 | 2.47e-108 | 314 |
| Msa0552170 | AT4G35040.4 | 65.152 | 264 | 76 | 8 | 1 | 259 | 1 | 253 | 2.47e-108 | 314 |
| Msa0552170 | AT4G35040.2 | 65.152 | 264 | 76 | 8 | 1 | 259 | 1 | 253 | 2.47e-108 | 314 |
| Msa0552170 | AT4G35040.3 | 65.152 | 264 | 76 | 8 | 1 | 259 | 1 | 253 | 2.47e-108 | 314 |
| Msa0552170 | AT3G51960.3 | 55.224 | 134 | 53 | 3 | 39 | 171 | 13 | 140 | 6.88e-46 | 152 |
| Msa0552170 | AT3G51960.2 | 55.224 | 134 | 53 | 3 | 39 | 171 | 52 | 179 | 1.57e-45 | 152 |
| Msa0552170 | AT3G51960.1 | 52.985 | 134 | 55 | 2 | 39 | 171 | 52 | 178 | 3.65e-44 | 149 |
Find 75 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGGATTGAAGGGGAAAT+TGG | 0.203175 | 4_1:+48635734 | Msa0552170:CDS |
| CCCAACCGGTCGCTTCTTAC+TGG | 0.266035 | 4_1:-48635537 | None:intergenic |
| AATCCTTGAGCCCCAAATTC+TGG | 0.295026 | 4_1:-48635958 | None:intergenic |
| GTTGCAGGGTCAGGCTGCTT+TGG | 0.296546 | 4_1:+48635667 | Msa0552170:CDS |
| GTGTATGGGAGGCCAGAATT+TGG | 0.299733 | 4_1:+48635946 | Msa0552170:CDS |
| TGTATGGGAGGCCAGAATTT+GGG | 0.316343 | 4_1:+48635947 | Msa0552170:CDS |
| AGTGTTTGTTGGTTGATATA+AGG | 0.329657 | 4_1:+48635711 | Msa0552170:CDS |
| GTTTGAAATTCACCCATGTT+TGG | 0.360095 | 4_1:-48635320 | None:intergenic |
| GTGTTTGTTGGTTGATATAA+GGG | 0.361837 | 4_1:+48635712 | Msa0552170:CDS |
| GGAGGATTGAAGGGGAAATT+GGG | 0.382575 | 4_1:+48635735 | Msa0552170:CDS |
| GCATTTGATGAGGAAGTTGC+AGG | 0.391045 | 4_1:+48635652 | Msa0552170:CDS |
| ATTTCAAACAAGTGGTTCAA+TGG | 0.405614 | 4_1:+48635334 | Msa0552170:CDS |
| CTTGGTATGAACATGATAAC+AGG | 0.414801 | 4_1:-48635450 | None:intergenic |
| GTTTGAGAGTCTCCAGTGTA+TGG | 0.417641 | 4_1:+48635931 | Msa0552170:CDS |
| TGCGAGGTTGAAGTGTTTGT+TGG | 0.420725 | 4_1:+48635700 | Msa0552170:CDS |
| ACATTCGCCGGTTTCTGATA+CGG | 0.425585 | 4_1:-48635764 | None:intergenic |
| GGCTGCGTCGTTGGAGGATG+AGG | 0.428168 | 4_1:+48635604 | Msa0552170:CDS |
| TCATCACACTGCACATTACA+AGG | 0.429810 | 4_1:-48635827 | None:intergenic |
| GCAGGGTCAGGCTGCTTTGG+AGG | 0.448256 | 4_1:+48635670 | Msa0552170:CDS |
| TCAGCAGCAATCTTCCCATC+TGG | 0.456534 | 4_1:-48635869 | None:intergenic |
| GATGAGGAAGTTGCAGGGTC+AGG | 0.462530 | 4_1:+48635658 | Msa0552170:CDS |
| GTCGTTTCCGTATCAGAAAC+CGG | 0.470020 | 4_1:+48635757 | Msa0552170:CDS |
| AGGCCAGAATTTGGGGCTCA+AGG | 0.471770 | 4_1:+48635955 | Msa0552170:CDS |
| GAAAGCTAGGGCTGCGTCGT+TGG | 0.478279 | 4_1:+48635595 | Msa0552170:CDS |
| AGCTAGGGCTGCGTCGTTGG+AGG | 0.489293 | 4_1:+48635598 | Msa0552170:CDS |
| CTGCTGAAGATGATCAGGTT+GGG | 0.489651 | 4_1:+48635480 | Msa0552170:CDS |
| ATCTTCAGCAGGGACAATCT+TGG | 0.492177 | 4_1:-48635468 | None:intergenic |
| CAAGCTTCCAGTAAAAGAAA+AGG | 0.495698 | 4_1:+48636025 | Msa0552170:CDS |
| GGGTCAGGCTGCTTTGGAGG+CGG | 0.496716 | 4_1:+48635673 | Msa0552170:CDS |
| ACGGCCTCTTTATTCCCAAC+CGG | 0.498176 | 4_1:-48635551 | None:intergenic |
| CCATCGAATCCATCCTCATT+CGG | 0.507560 | 4_1:-48635902 | None:intergenic |
| TTGGGAATAAAGAGGCCGTT+AGG | 0.508441 | 4_1:+48635555 | Msa0552170:CDS |
| GCATATTGCCTTCGTCCAGA+TGG | 0.514127 | 4_1:+48635854 | Msa0552170:CDS |
| TGTCCCTGCTGAAGATGATC+AGG | 0.516014 | 4_1:+48635475 | Msa0552170:CDS |
| CCAGTAAGAAGCGACCGGTT+GGG | 0.517346 | 4_1:+48635537 | Msa0552170:CDS |
| ATCGTGAGAAGAAGAAAGCT+AGG | 0.518063 | 4_1:+48635582 | Msa0552170:CDS |
| TAATGTGCAGTGTGATGATC+GGG | 0.521659 | 4_1:+48635832 | Msa0552170:CDS |
| CTTTGGAGGCGGAAGTTGCG+AGG | 0.525689 | 4_1:+48635684 | Msa0552170:CDS |
| CCAACCTGATCATCTTCAGC+AGG | 0.525807 | 4_1:-48635479 | None:intergenic |
| TCCAGTAAGAAGCGACCGGT+TGG | 0.526553 | 4_1:+48635536 | Msa0552170:CDS |
| AGGATGAGGTCATGAAATTG+AGG | 0.534541 | 4_1:+48635618 | Msa0552170:CDS |
| ATGGGTGAATTTCAAACAAG+TGG | 0.547703 | 4_1:+48635326 | Msa0552170:CDS |
| CATATTGCCTTCGTCCAGAT+GGG | 0.548979 | 4_1:+48635855 | Msa0552170:CDS |
| AATTCTGGCCTCCCATACAC+TGG | 0.551814 | 4_1:-48635943 | None:intergenic |
| AATCCCGCGATGAATTTGCC+TGG | 0.554148 | 4_1:+48635788 | Msa0552170:CDS |
| GTGGCGTCGCCGAATGAGGA+TGG | 0.554803 | 4_1:+48635893 | Msa0552170:CDS |
| GACCAGGTGGGTTACACGTG+TGG | 0.559695 | 4_1:-48635406 | None:intergenic |
| ATCGCGGGATTCACATTCGC+CGG | 0.559991 | 4_1:-48635776 | None:intergenic |
| GGGTTCATCACATGAGAACC+AGG | 0.577391 | 4_1:-48635806 | None:intergenic |
| GTTTGTTGGTTGATATAAGG+GGG | 0.577819 | 4_1:+48635714 | Msa0552170:CDS |
| TGTTTGTTGGTTGATATAAG+GGG | 0.578417 | 4_1:+48635713 | Msa0552170:CDS |
| GGATGAGGTCATGAAATTGA+GGG | 0.578672 | 4_1:+48635619 | Msa0552170:CDS |
| ACACGTGTGGGTATGAGTAC+AGG | 0.580524 | 4_1:-48635393 | None:intergenic |
| GTAATGTGCAGTGTGATGAT+CGG | 0.581966 | 4_1:+48635831 | Msa0552170:CDS |
| GAAGTCCAGTAAGAAGCGAC+CGG | 0.585566 | 4_1:+48635532 | Msa0552170:CDS |
| TTTGAGAGTCTCCAGTGTAT+GGG | 0.588557 | 4_1:+48635932 | Msa0552170:CDS |
| GTATGGGAGGCCAGAATTTG+GGG | 0.595109 | 4_1:+48635948 | Msa0552170:CDS |
| CCGAATGAGGATGGATTCGA+TGG | 0.597469 | 4_1:+48635902 | Msa0552170:CDS |
| TGAAGTGGCGTCGCCGAATG+AGG | 0.598815 | 4_1:+48635889 | Msa0552170:CDS |
| ACCCACACGTGTAACCCACC+TGG | 0.607124 | 4_1:+48635404 | Msa0552170:CDS |
| ACCAGGTGGGTTACACGTGT+GGG | 0.610384 | 4_1:-48635405 | None:intergenic |
| GAACCAGGCAAATTCATCGC+GGG | 0.610422 | 4_1:-48635791 | None:intergenic |
| TCGTGAGAAGAAGAAAGCTA+GGG | 0.612179 | 4_1:+48635583 | Msa0552170:CDS |
| TGGGAAGATTGCTGCTGAAG+TGG | 0.614233 | 4_1:+48635874 | Msa0552170:CDS |
| CTTTGAATCAGCATTTGATG+AGG | 0.616238 | 4_1:+48635642 | Msa0552170:CDS |
| CAATCTTCCCATCTGGACGA+AGG | 0.622375 | 4_1:-48635862 | None:intergenic |
| CATTTGATGAGGAAGTTGCA+GGG | 0.622580 | 4_1:+48635653 | Msa0552170:CDS |
| CCTGCTGAAGATGATCAGGT+TGG | 0.627520 | 4_1:+48635479 | Msa0552170:CDS |
| GAGAGTCTCCAGTGTATGGG+AGG | 0.629740 | 4_1:+48635935 | Msa0552170:CDS |
| CTTCTCACGATACTTCCTAA+CGG | 0.630373 | 4_1:-48635570 | None:intergenic |
| GCGACCGGTTGGGAATAAAG+AGG | 0.649541 | 4_1:+48635547 | Msa0552170:CDS |
| CAACCTGATCATCTTCAGCA+GGG | 0.684116 | 4_1:-48635478 | None:intergenic |
| CATCACACTGCACATTACAA+GGG | 0.696358 | 4_1:-48635826 | None:intergenic |
| AGAACCAGGCAAATTCATCG+CGG | 0.732891 | 4_1:-48635792 | None:intergenic |
| GAATTGACATTAGACAACGT+CGG | 0.759673 | 4_1:-48636001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGATGAATTGTTGA+AGG | + | chr4_1:48635361-48635380 | Msa0552170:CDS | 20.0% |
| !!! | TTTTTTTGATGAATTGTTGA+AGG | + | chr4_1:48635361-48635380 | Msa0552170:CDS | 20.0% |
| ATTTCAAACAAGTGGTTCAA+TGG | + | chr4_1:48635334-48635353 | Msa0552170:CDS | 30.0% | |
| ! | AGTGTTTGTTGGTTGATATA+AGG | + | chr4_1:48635711-48635730 | Msa0552170:CDS | 30.0% |
| ! | GTGTTTGTTGGTTGATATAA+GGG | + | chr4_1:48635712-48635731 | Msa0552170:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATAAG+GGG | + | chr4_1:48635713-48635732 | Msa0552170:CDS | 30.0% |
| ATTTCAAACAAGTGGTTCAA+TGG | + | chr4_1:48635334-48635353 | Msa0552170:CDS | 30.0% | |
| ! | AGTGTTTGTTGGTTGATATA+AGG | + | chr4_1:48635711-48635730 | Msa0552170:CDS | 30.0% |
| ! | GTGTTTGTTGGTTGATATAA+GGG | + | chr4_1:48635712-48635731 | Msa0552170:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATAAG+GGG | + | chr4_1:48635713-48635732 | Msa0552170:CDS | 30.0% |
| ! | GTTTGAAATTCACCCATGTT+TGG | - | chr4_1:48635323-48635342 | None:intergenic | 35.0% |
| ATGGGTGAATTTCAAACAAG+TGG | + | chr4_1:48635326-48635345 | Msa0552170:CDS | 35.0% | |
| CTTGGTATGAACATGATAAC+AGG | - | chr4_1:48635453-48635472 | None:intergenic | 35.0% | |
| CTTTGAATCAGCATTTGATG+AGG | + | chr4_1:48635642-48635661 | Msa0552170:CDS | 35.0% | |
| ! | GTTTGTTGGTTGATATAAGG+GGG | + | chr4_1:48635714-48635733 | Msa0552170:CDS | 35.0% |
| GAATTGACATTAGACAACGT+CGG | - | chr4_1:48636004-48636023 | None:intergenic | 35.0% | |
| CAAGCTTCCAGTAAAAGAAA+AGG | + | chr4_1:48636025-48636044 | Msa0552170:CDS | 35.0% | |
| ! | GTCATCACCTTTTCTTTTAC+TGG | - | chr4_1:48636035-48636054 | None:intergenic | 35.0% |
| ! | GTTTGAAATTCACCCATGTT+TGG | - | chr4_1:48635323-48635342 | None:intergenic | 35.0% |
| ATGGGTGAATTTCAAACAAG+TGG | + | chr4_1:48635326-48635345 | Msa0552170:CDS | 35.0% | |
| CTTGGTATGAACATGATAAC+AGG | - | chr4_1:48635453-48635472 | None:intergenic | 35.0% | |
| CTTTGAATCAGCATTTGATG+AGG | + | chr4_1:48635642-48635661 | Msa0552170:CDS | 35.0% | |
| ! | GTTTGTTGGTTGATATAAGG+GGG | + | chr4_1:48635714-48635733 | Msa0552170:CDS | 35.0% |
| GAATTGACATTAGACAACGT+CGG | - | chr4_1:48636004-48636023 | None:intergenic | 35.0% | |
| CAAGCTTCCAGTAAAAGAAA+AGG | + | chr4_1:48636025-48636044 | Msa0552170:CDS | 35.0% | |
| ! | GTCATCACCTTTTCTTTTAC+TGG | - | chr4_1:48636035-48636054 | None:intergenic | 35.0% |
| !!! | GTGTTTTCGAGTCCAAACAT+GGG | + | chr4_1:48635308-48635327 | Msa0552170:CDS | 40.0% |
| GTGTGAGTGTGTGAAAAATC+AGG | - | chr4_1:48635431-48635450 | None:intergenic | 40.0% | |
| CTTCTCACGATACTTCCTAA+CGG | - | chr4_1:48635573-48635592 | None:intergenic | 40.0% | |
| ATCGTGAGAAGAAGAAAGCT+AGG | + | chr4_1:48635582-48635601 | Msa0552170:CDS | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | + | chr4_1:48635583-48635602 | Msa0552170:CDS | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | + | chr4_1:48635618-48635637 | Msa0552170:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | + | chr4_1:48635619-48635638 | Msa0552170:CDS | 40.0% | |
| CATTTGATGAGGAAGTTGCA+GGG | + | chr4_1:48635653-48635672 | Msa0552170:CDS | 40.0% | |
| ATATAAGGGGGAGGATTGAA+GGG | + | chr4_1:48635726-48635745 | Msa0552170:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | - | chr4_1:48635829-48635848 | None:intergenic | 40.0% | |
| TCATCACACTGCACATTACA+AGG | - | chr4_1:48635830-48635849 | None:intergenic | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | + | chr4_1:48635831-48635850 | Msa0552170:CDS | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | + | chr4_1:48635832-48635851 | Msa0552170:CDS | 40.0% | |
| TTTGAGAGTCTCCAGTGTAT+GGG | + | chr4_1:48635932-48635951 | Msa0552170:CDS | 40.0% | |
| !!! | GTGTTTTCGAGTCCAAACAT+GGG | + | chr4_1:48635308-48635327 | Msa0552170:CDS | 40.0% |
| GTGTGAGTGTGTGAAAAATC+AGG | - | chr4_1:48635431-48635450 | None:intergenic | 40.0% | |
| CTTCTCACGATACTTCCTAA+CGG | - | chr4_1:48635573-48635592 | None:intergenic | 40.0% | |
| ATCGTGAGAAGAAGAAAGCT+AGG | + | chr4_1:48635582-48635601 | Msa0552170:CDS | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | + | chr4_1:48635583-48635602 | Msa0552170:CDS | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | + | chr4_1:48635618-48635637 | Msa0552170:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | + | chr4_1:48635619-48635638 | Msa0552170:CDS | 40.0% | |
| CATTTGATGAGGAAGTTGCA+GGG | + | chr4_1:48635653-48635672 | Msa0552170:CDS | 40.0% | |
| ATATAAGGGGGAGGATTGAA+GGG | + | chr4_1:48635726-48635745 | Msa0552170:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | - | chr4_1:48635829-48635848 | None:intergenic | 40.0% | |
| TCATCACACTGCACATTACA+AGG | - | chr4_1:48635830-48635849 | None:intergenic | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | + | chr4_1:48635831-48635850 | Msa0552170:CDS | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | + | chr4_1:48635832-48635851 | Msa0552170:CDS | 40.0% | |
| TTTGAGAGTCTCCAGTGTAT+GGG | + | chr4_1:48635932-48635951 | Msa0552170:CDS | 40.0% | |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | + | chr4_1:48635307-48635326 | Msa0552170:CDS | 45.0% |
| GTGAAAAATCAGGACCAGGT+GGG | - | chr4_1:48635421-48635440 | None:intergenic | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | - | chr4_1:48635422-48635441 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | - | chr4_1:48635425-48635444 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | - | chr4_1:48635471-48635490 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | - | chr4_1:48635481-48635500 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | + | chr4_1:48635480-48635499 | Msa0552170:CDS | 45.0% | |
| TTGGGAATAAAGAGGCCGTT+AGG | + | chr4_1:48635555-48635574 | Msa0552170:CDS | 45.0% | |
| GCATTTGATGAGGAAGTTGC+AGG | + | chr4_1:48635652-48635671 | Msa0552170:CDS | 45.0% | |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | + | chr4_1:48635700-48635719 | Msa0552170:CDS | 45.0% |
| ! | TGTTGGTTGATATAAGGGGG+AGG | + | chr4_1:48635717-48635736 | Msa0552170:CDS | 45.0% |
| GATATAAGGGGGAGGATTGA+AGG | + | chr4_1:48635725-48635744 | Msa0552170:CDS | 45.0% | |
| TATAAGGGGGAGGATTGAAG+GGG | + | chr4_1:48635727-48635746 | Msa0552170:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | + | chr4_1:48635735-48635754 | Msa0552170:CDS | 45.0% | |
| GTCGTTTCCGTATCAGAAAC+CGG | + | chr4_1:48635757-48635776 | Msa0552170:CDS | 45.0% | |
| !! | ACATTCGCCGGTTTCTGATA+CGG | - | chr4_1:48635767-48635786 | None:intergenic | 45.0% |
| AGAACCAGGCAAATTCATCG+CGG | - | chr4_1:48635795-48635814 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | + | chr4_1:48635855-48635874 | Msa0552170:CDS | 45.0% | |
| CCATCGAATCCATCCTCATT+CGG | - | chr4_1:48635905-48635924 | None:intergenic | 45.0% | |
| GTTTGAGAGTCTCCAGTGTA+TGG | + | chr4_1:48635931-48635950 | Msa0552170:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | + | chr4_1:48635947-48635966 | Msa0552170:CDS | 45.0% | |
| AATCCTTGAGCCCCAAATTC+TGG | - | chr4_1:48635961-48635980 | None:intergenic | 45.0% | |
| ! | CTCAAGGATTTTCGTGGTTG+TGG | + | chr4_1:48635971-48635990 | Msa0552170:CDS | 45.0% |
| ! | AAGGATTTTCGTGGTTGTGG+AGG | + | chr4_1:48635974-48635993 | Msa0552170:CDS | 45.0% |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | + | chr4_1:48635307-48635326 | Msa0552170:CDS | 45.0% |
| GTGAAAAATCAGGACCAGGT+GGG | - | chr4_1:48635421-48635440 | None:intergenic | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | - | chr4_1:48635422-48635441 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | - | chr4_1:48635425-48635444 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | - | chr4_1:48635471-48635490 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | - | chr4_1:48635481-48635500 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | + | chr4_1:48635480-48635499 | Msa0552170:CDS | 45.0% | |
| TTGGGAATAAAGAGGCCGTT+AGG | + | chr4_1:48635555-48635574 | Msa0552170:CDS | 45.0% | |
| GCATTTGATGAGGAAGTTGC+AGG | + | chr4_1:48635652-48635671 | Msa0552170:CDS | 45.0% | |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | + | chr4_1:48635700-48635719 | Msa0552170:CDS | 45.0% |
| ! | TGTTGGTTGATATAAGGGGG+AGG | + | chr4_1:48635717-48635736 | Msa0552170:CDS | 45.0% |
| GATATAAGGGGGAGGATTGA+AGG | + | chr4_1:48635725-48635744 | Msa0552170:CDS | 45.0% | |
| TATAAGGGGGAGGATTGAAG+GGG | + | chr4_1:48635727-48635746 | Msa0552170:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | + | chr4_1:48635735-48635754 | Msa0552170:CDS | 45.0% | |
| GTCGTTTCCGTATCAGAAAC+CGG | + | chr4_1:48635757-48635776 | Msa0552170:CDS | 45.0% | |
| !! | ACATTCGCCGGTTTCTGATA+CGG | - | chr4_1:48635767-48635786 | None:intergenic | 45.0% |
| AGAACCAGGCAAATTCATCG+CGG | - | chr4_1:48635795-48635814 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | + | chr4_1:48635855-48635874 | Msa0552170:CDS | 45.0% | |
| CCATCGAATCCATCCTCATT+CGG | - | chr4_1:48635905-48635924 | None:intergenic | 45.0% | |
| GTTTGAGAGTCTCCAGTGTA+TGG | + | chr4_1:48635931-48635950 | Msa0552170:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | + | chr4_1:48635947-48635966 | Msa0552170:CDS | 45.0% | |
| AATCCTTGAGCCCCAAATTC+TGG | - | chr4_1:48635961-48635980 | None:intergenic | 45.0% | |
| ! | CTCAAGGATTTTCGTGGTTG+TGG | + | chr4_1:48635971-48635990 | Msa0552170:CDS | 45.0% |
| ! | AAGGATTTTCGTGGTTGTGG+AGG | + | chr4_1:48635974-48635993 | Msa0552170:CDS | 45.0% |
| ACACGTGTGGGTATGAGTAC+AGG | - | chr4_1:48635396-48635415 | None:intergenic | 50.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | + | chr4_1:48635475-48635494 | Msa0552170:CDS | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | - | chr4_1:48635482-48635501 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | + | chr4_1:48635479-48635498 | Msa0552170:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | + | chr4_1:48635532-48635551 | Msa0552170:CDS | 50.0% | |
| ACGGCCTCTTTATTCCCAAC+CGG | - | chr4_1:48635554-48635573 | None:intergenic | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | + | chr4_1:48635734-48635753 | Msa0552170:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | + | chr4_1:48635788-48635807 | Msa0552170:CDS | 50.0% | |
| GAACCAGGCAAATTCATCGC+GGG | - | chr4_1:48635794-48635813 | None:intergenic | 50.0% | |
| GGGTTCATCACATGAGAACC+AGG | - | chr4_1:48635809-48635828 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | + | chr4_1:48635854-48635873 | Msa0552170:CDS | 50.0% | |
| CAATCTTCCCATCTGGACGA+AGG | - | chr4_1:48635865-48635884 | None:intergenic | 50.0% | |
| TCAGCAGCAATCTTCCCATC+TGG | - | chr4_1:48635872-48635891 | None:intergenic | 50.0% | |
| TGGGAAGATTGCTGCTGAAG+TGG | + | chr4_1:48635874-48635893 | Msa0552170:CDS | 50.0% | |
| ! | CCGAATGAGGATGGATTCGA+TGG | + | chr4_1:48635902-48635921 | Msa0552170:CDS | 50.0% |
| AATTCTGGCCTCCCATACAC+TGG | - | chr4_1:48635946-48635965 | None:intergenic | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | + | chr4_1:48635946-48635965 | Msa0552170:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | + | chr4_1:48635948-48635967 | Msa0552170:CDS | 50.0% | |
| ! | TTGGGGCTCAAGGATTTTCG+TGG | + | chr4_1:48635965-48635984 | Msa0552170:CDS | 50.0% |
| ! | GATTTTCGTGGTTGTGGAGG+TGG | + | chr4_1:48635977-48635996 | Msa0552170:CDS | 50.0% |
| ACACGTGTGGGTATGAGTAC+AGG | - | chr4_1:48635396-48635415 | None:intergenic | 50.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | + | chr4_1:48635475-48635494 | Msa0552170:CDS | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | - | chr4_1:48635482-48635501 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | + | chr4_1:48635479-48635498 | Msa0552170:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | + | chr4_1:48635532-48635551 | Msa0552170:CDS | 50.0% | |
| ACGGCCTCTTTATTCCCAAC+CGG | - | chr4_1:48635554-48635573 | None:intergenic | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | + | chr4_1:48635734-48635753 | Msa0552170:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | + | chr4_1:48635788-48635807 | Msa0552170:CDS | 50.0% | |
| GAACCAGGCAAATTCATCGC+GGG | - | chr4_1:48635794-48635813 | None:intergenic | 50.0% | |
| GGGTTCATCACATGAGAACC+AGG | - | chr4_1:48635809-48635828 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | + | chr4_1:48635854-48635873 | Msa0552170:CDS | 50.0% | |
| CAATCTTCCCATCTGGACGA+AGG | - | chr4_1:48635865-48635884 | None:intergenic | 50.0% | |
| TCAGCAGCAATCTTCCCATC+TGG | - | chr4_1:48635872-48635891 | None:intergenic | 50.0% | |
| TGGGAAGATTGCTGCTGAAG+TGG | + | chr4_1:48635874-48635893 | Msa0552170:CDS | 50.0% | |
| ! | CCGAATGAGGATGGATTCGA+TGG | + | chr4_1:48635902-48635921 | Msa0552170:CDS | 50.0% |
| AATTCTGGCCTCCCATACAC+TGG | - | chr4_1:48635946-48635965 | None:intergenic | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | + | chr4_1:48635946-48635965 | Msa0552170:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | + | chr4_1:48635948-48635967 | Msa0552170:CDS | 50.0% | |
| ! | TTGGGGCTCAAGGATTTTCG+TGG | + | chr4_1:48635965-48635984 | Msa0552170:CDS | 50.0% |
| ! | GATTTTCGTGGTTGTGGAGG+TGG | + | chr4_1:48635977-48635996 | Msa0552170:CDS | 50.0% |
| !! | ACCAGGTGGGTTACACGTGT+GGG | - | chr4_1:48635408-48635427 | None:intergenic | 55.0% |
| TCCAGTAAGAAGCGACCGGT+TGG | + | chr4_1:48635536-48635555 | Msa0552170:CDS | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | + | chr4_1:48635537-48635556 | Msa0552170:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | + | chr4_1:48635547-48635566 | Msa0552170:CDS | 55.0% | |
| GATGAGGAAGTTGCAGGGTC+AGG | + | chr4_1:48635658-48635677 | Msa0552170:CDS | 55.0% | |
| ATCGCGGGATTCACATTCGC+CGG | - | chr4_1:48635779-48635798 | None:intergenic | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | + | chr4_1:48635935-48635954 | Msa0552170:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | + | chr4_1:48635955-48635974 | Msa0552170:CDS | 55.0% |
| !! | ACCAGGTGGGTTACACGTGT+GGG | - | chr4_1:48635408-48635427 | None:intergenic | 55.0% |
| TCCAGTAAGAAGCGACCGGT+TGG | + | chr4_1:48635536-48635555 | Msa0552170:CDS | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | + | chr4_1:48635537-48635556 | Msa0552170:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | + | chr4_1:48635547-48635566 | Msa0552170:CDS | 55.0% | |
| GATGAGGAAGTTGCAGGGTC+AGG | + | chr4_1:48635658-48635677 | Msa0552170:CDS | 55.0% | |
| ATCGCGGGATTCACATTCGC+CGG | - | chr4_1:48635779-48635798 | None:intergenic | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | + | chr4_1:48635935-48635954 | Msa0552170:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | + | chr4_1:48635955-48635974 | Msa0552170:CDS | 55.0% |
| ACCCACACGTGTAACCCACC+TGG | + | chr4_1:48635404-48635423 | Msa0552170:CDS | 60.0% | |
| !! | GACCAGGTGGGTTACACGTG+TGG | - | chr4_1:48635409-48635428 | None:intergenic | 60.0% |
| CCCAACCGGTCGCTTCTTAC+TGG | - | chr4_1:48635540-48635559 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | + | chr4_1:48635595-48635614 | Msa0552170:CDS | 60.0% | |
| GTTGCAGGGTCAGGCTGCTT+TGG | + | chr4_1:48635667-48635686 | Msa0552170:CDS | 60.0% | |
| ! | CTTTGGAGGCGGAAGTTGCG+AGG | + | chr4_1:48635684-48635703 | Msa0552170:CDS | 60.0% |
| TGAAGTGGCGTCGCCGAATG+AGG | + | chr4_1:48635889-48635908 | Msa0552170:CDS | 60.0% | |
| ACCCACACGTGTAACCCACC+TGG | + | chr4_1:48635404-48635423 | Msa0552170:CDS | 60.0% | |
| !! | GACCAGGTGGGTTACACGTG+TGG | - | chr4_1:48635409-48635428 | None:intergenic | 60.0% |
| CCCAACCGGTCGCTTCTTAC+TGG | - | chr4_1:48635540-48635559 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | + | chr4_1:48635595-48635614 | Msa0552170:CDS | 60.0% | |
| GTTGCAGGGTCAGGCTGCTT+TGG | + | chr4_1:48635667-48635686 | Msa0552170:CDS | 60.0% | |
| ! | CTTTGGAGGCGGAAGTTGCG+AGG | + | chr4_1:48635684-48635703 | Msa0552170:CDS | 60.0% |
| TGAAGTGGCGTCGCCGAATG+AGG | + | chr4_1:48635889-48635908 | Msa0552170:CDS | 60.0% | |
| AGCTAGGGCTGCGTCGTTGG+AGG | + | chr4_1:48635598-48635617 | Msa0552170:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | + | chr4_1:48635604-48635623 | Msa0552170:CDS | 65.0% | |
| ! | GCAGGGTCAGGCTGCTTTGG+AGG | + | chr4_1:48635670-48635689 | Msa0552170:CDS | 65.0% |
| !! | GGGTCAGGCTGCTTTGGAGG+CGG | + | chr4_1:48635673-48635692 | Msa0552170:CDS | 65.0% |
| GTGGCGTCGCCGAATGAGGA+TGG | + | chr4_1:48635893-48635912 | Msa0552170:CDS | 65.0% | |
| AGCTAGGGCTGCGTCGTTGG+AGG | + | chr4_1:48635598-48635617 | Msa0552170:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | + | chr4_1:48635604-48635623 | Msa0552170:CDS | 65.0% | |
| ! | GCAGGGTCAGGCTGCTTTGG+AGG | + | chr4_1:48635670-48635689 | Msa0552170:CDS | 65.0% |
| !! | GGGTCAGGCTGCTTTGGAGG+CGG | + | chr4_1:48635673-48635692 | Msa0552170:CDS | 65.0% |
| GTGGCGTCGCCGAATGAGGA+TGG | + | chr4_1:48635893-48635912 | Msa0552170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 48635272 | 48636057 | 48635272 | ID=Msa0552170;Name=Msa0552170 |
| chr4_1 | mRNA | 48635272 | 48636057 | 48635272 | ID=Msa0552170-mRNA-1;Parent=Msa0552170;Name=Msa0552170-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|261 |
| chr4_1 | exon | 48635272 | 48636057 | 48635272 | ID=Msa0552170-mRNA-1:exon:13365;Parent=Msa0552170-mRNA-1 |
| chr4_1 | CDS | 48635272 | 48636057 | 48635272 | ID=Msa0552170-mRNA-1:cds;Parent=Msa0552170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
