AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554190 MtrunA17_Chr4g0040071 100.000 216 0 0 1 216 1 216 5.32e-164 451
Msa0554190 MtrunA17_Chr5g0411151 72.381 210 56 1 3 210 23 232 6.28e-115 327
Msa0554190 MtrunA17_Chr5g0395181 73.516 219 45 4 1 213 1 212 1.86e-113 323
Msa0554190 MtrunA17_Chr8g0366581 69.159 214 62 2 3 213 21 233 3.01e-107 308
Msa0554190 MtrunA17_Chr7g0265291 54.726 201 81 5 15 209 7 203 1.30e-70 214
Msa0554190 MtrunA17_Chr1g0179781 53.465 202 81 4 15 209 7 202 3.16e-70 213
Msa0554190 MtrunA17_Chr2g0308401 50.000 136 58 4 16 141 5 140 3.94e-40 134
Msa0554190 MtrunA17_Chr2g0297251 35.808 229 106 6 15 209 37 258 4.19e-40 137
Msa0554190 MtrunA17_Chr4g0020811 48.529 136 60 3 16 141 7 142 6.73e-40 134
Msa0554190 MtrunA17_Chr7g0230511 32.922 243 115 5 12 208 6 246 1.75e-38 133
Msa0554190 MtrunA17_Chr4g0065041 31.837 245 115 4 15 208 8 251 5.69e-38 132
Msa0554190 MtrunA17_Chr2g0320521 35.683 227 110 6 16 208 7 231 7.61e-38 131
Msa0554190 MtrunA17_Chr2g0320561 48.936 141 62 4 16 146 5 145 3.52e-36 127
Msa0554190 MtrunA17_Chr2g0320551 45.588 136 64 3 16 141 5 140 2.31e-34 120
Msa0554190 MtrunA17_Chr4g0052451 45.122 82 39 1 67 142 11 92 4.04e-21 84.0
Msa0554190 MtrunA17_Chr8g0392151 33.951 162 82 6 1 141 1 158 1.47e-17 78.6
Msa0554190 MtrunA17_Chr8g0386511 29.560 159 99 4 54 208 4 153 6.43e-17 74.7
Msa0554190 MtrunA17_Chr5g0434331 27.500 200 103 8 15 208 43 206 1.08e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554190 AT4G17900.1 68.868 212 55 4 3 209 22 227 3.38e-101 292
Msa0554190 AT1G32700.1 67.907 215 62 4 6 216 2 213 9.65e-97 281
Msa0554190 AT4G17900.2 69.000 200 57 3 12 209 17 213 2.01e-96 280
Msa0554190 AT1G21000.2 51.046 239 76 5 9 208 7 243 1.75e-76 230
Msa0554190 AT1G21000.1 51.046 239 76 5 9 208 10 246 2.17e-76 230
Msa0554190 AT1G32700.2 67.797 177 51 3 43 216 1 174 1.37e-75 226
Msa0554190 AT1G76590.1 46.964 247 90 4 1 208 1 245 8.07e-72 219
Msa0554190 AT5G46710.1 52.404 208 87 5 9 208 22 225 8.19e-70 213
Msa0554190 AT5G46710.3 52.404 208 87 5 9 208 6 209 8.28e-70 212
Msa0554190 AT1G43000.2 51.442 208 87 3 15 208 16 223 4.74e-68 208
Msa0554190 AT1G43000.1 51.442 208 87 3 15 208 9 216 6.33e-68 207
Msa0554190 AT5G46710.2 61.940 134 50 1 9 141 22 155 1.79e-60 187
Msa0554190 AT2G27930.1 45.631 206 82 5 15 210 4 189 2.31e-51 164
Msa0554190 AT2G27930.4 45.631 206 82 5 15 210 4 189 2.31e-51 164
Msa0554190 AT2G27930.3 46.988 166 78 2 15 170 4 169 9.63e-47 152
Msa0554190 AT2G27930.2 46.988 166 78 2 15 170 4 169 9.63e-47 152
Msa0554190 AT2G12646.1 48.148 135 69 1 15 149 6 139 2.72e-39 136
Msa0554190 AT2G12646.2 48.148 135 69 1 15 149 6 139 2.72e-39 136
Msa0554190 AT2G12646.3 48.148 135 69 1 15 149 3 136 2.86e-39 135
Msa0554190 AT3G60670.1 46.970 132 69 1 10 141 2 132 4.99e-37 130
Msa0554190 AT1G31040.1 37.611 226 107 7 15 208 19 242 1.08e-36 129
Msa0554190 AT2G27930.5 46.053 152 53 4 68 210 61 192 5.03e-32 115
Msa0554190 AT2G27930.6 46.053 152 53 4 68 210 61 192 5.03e-32 115
Msa0554190 AT2G01818.1 35.071 211 116 8 17 208 13 221 2.10e-25 99.4
Msa0554190 AT2G01818.2 46.250 80 37 3 74 147 9 88 4.69e-13 65.1

Find 104 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGATATTGTTGAAAT+TGG 0.180508 4_1:+51435090 None:intergenic
TTCTGAGATACAGAAATTTC+TGG 0.238023 4_1:-51434341 Msa0554190:CDS
TTTATTCTTCCTCAACTTCT+TGG 0.252653 4_1:+51433663 None:intergenic
CAAACCAGATATGACTTTAA+TGG 0.254489 4_1:+51433339 None:intergenic
TTGATGAATAAGTAGTAAAT+TGG 0.255905 4_1:+51435125 None:intergenic
GTTTGAGGATTAGTCTTTAC+AGG 0.260024 4_1:-51433321 Msa0554190:three_prime_UTR
TCCTTCAGCTTCTGCTCTCT+TGG 0.285072 4_1:-51434190 Msa0554190:CDS
TATAGCATTAGCATCTAGTT+TGG 0.334906 4_1:-51433032 Msa0554190:three_prime_UTR
CCAGCCATTAAAGTCATATC+TGG 0.335400 4_1:-51433343 Msa0554190:three_prime_UTR
CTTCTGCTCTCTTGGTTGTA+AGG 0.335637 4_1:-51434182 Msa0554190:intron
TAGTATATGTAGTATTGTTT+TGG 0.357620 4_1:-51432921 Msa0554190:three_prime_UTR
TTTACTGCTCTACATTGTAT+AGG 0.359530 4_1:-51433183 Msa0554190:three_prime_UTR
CAAACAACATAGAACAATTC+AGG 0.377021 4_1:-51434763 Msa0554190:intron
TGGAATTAGGGAGGTGGAGG+AGG 0.387306 4_1:-51434951 Msa0554190:intron
CTCAACCTAGGCCTGGAAAA+GGG 0.405265 4_1:-51434255 Msa0554190:CDS
TTAATAATAATGTTATATAG+TGG 0.407826 4_1:-51433443 Msa0554190:three_prime_UTR
GTGATGCTAAATGTATATAT+TGG 0.408963 4_1:-51433075 Msa0554190:three_prime_UTR
GAAGGGAAAAGGTTGGAACT+TGG 0.412855 4_1:+51435198 None:intergenic
AAGAAACTTGTTTGAAGAAG+TGG 0.413060 4_1:+51434888 None:intergenic
CTTTGCACTGTTTATAACAT+AGG 0.413289 4_1:+51434300 None:intergenic
TTCATACCATGATGTGATAA+GGG 0.415618 4_1:-51434365 Msa0554190:CDS
CTTCATACCATGATGTGATA+AGG 0.416229 4_1:-51434366 Msa0554190:CDS
TTGGCTAGTGGACTAGTTAG+TGG 0.418428 4_1:-51432902 Msa0554190:three_prime_UTR
AGCAAGACAAACAGAACAAA+GGG 0.420807 4_1:+51434791 None:intergenic
TTGATGATATTGTTGAAATT+GGG 0.421355 4_1:+51435091 None:intergenic
AAGTGGGGAATTTATTGTAC+TGG 0.422400 4_1:-51433102 Msa0554190:three_prime_UTR
CCTCAACCTAGGCCTGGAAA+AGG 0.425716 4_1:-51434256 Msa0554190:CDS
TTGTTCCCTGAGGCCGGTGT+AGG 0.425823 4_1:-51433208 Msa0554190:three_prime_UTR
TATATTGGTGGTTTATAGAA+AGG 0.430762 4_1:-51433060 Msa0554190:three_prime_UTR
GCTGTTGGAGGTGGTGTTGA+AGG 0.439304 4_1:+51433550 None:intergenic
TTAAAGTCATATCTGGTTTG+AGG 0.442998 4_1:-51433336 Msa0554190:three_prime_UTR
TGAGCCTTGTTCCCTGAGGC+CGG 0.446852 4_1:-51433214 Msa0554190:three_prime_UTR
ATTCTTCCTCAACTTCTTGG+AGG 0.449130 4_1:+51433666 None:intergenic
TAAATCCCTACACCGGCCTC+AGG 0.459529 4_1:+51433202 None:intergenic
GAACTTTGAACAAGTATGAA+TGG 0.464047 4_1:+51435170 None:intergenic
GGAGAGAGAAGGGAAAAGGT+TGG 0.466532 4_1:+51435191 None:intergenic
GGCCTCAGGGAACAAGGCTC+AGG 0.468455 4_1:+51433216 None:intergenic
GAATGGAGAGAGAAGGGAAA+AGG 0.486220 4_1:+51435187 None:intergenic
ATGAATAAGTAGTAAATTGG+AGG 0.486301 4_1:+51435128 None:intergenic
CAGATATGACTTTAATGGCT+GGG 0.486717 4_1:+51433344 None:intergenic
AAAAGGTTGGAACTTGGAAG+TGG 0.487499 4_1:+51435204 None:intergenic
AAGCAGGTAATAATATAAGT+GGG 0.493289 4_1:-51433118 Msa0554190:three_prime_UTR
GAAAGGCCTCAACCTAGGCC+TGG 0.497293 4_1:-51434262 Msa0554190:CDS
AAAGCAGGTAATAATATAAG+TGG 0.500799 4_1:-51433119 Msa0554190:three_prime_UTR
TTTGTAGTGGCGGGTGATGA+AGG 0.502057 4_1:+51435236 None:intergenic
AAGTATGAATGGAGAGAGAA+GGG 0.504399 4_1:+51435181 None:intergenic
CCAGATATGACTTTAATGGC+TGG 0.504748 4_1:+51433343 None:intergenic
TAACTCACTGCTGTTGGAGG+TGG 0.507231 4_1:+51433541 None:intergenic
AAATCATCATATCTCAATCA+TGG 0.507659 4_1:-51435069 Msa0554190:intron
TGTTCCCTGAGGCCGGTGTA+GGG 0.516004 4_1:-51433207 Msa0554190:three_prime_UTR
CTGTAACTCACTGCTGTTGG+AGG 0.521807 4_1:+51433538 None:intergenic
AAATGTTGAGTCAGAAAGAC+GGG 0.526940 4_1:-51433642 Msa0554190:CDS
GAAGGCTACGGTCACAGACT+TGG 0.533320 4_1:+51434218 None:intergenic
AGAACAGTTAAGAGGAGGAA+AGG 0.533678 4_1:-51433517 Msa0554190:CDS
ATCAATGTTGATAGATAAGG+AGG 0.535527 4_1:-51434390 Msa0554190:intron
AAAGGTTGGAACTTGGAAGT+GGG 0.536328 4_1:+51435205 None:intergenic
ATACTACTTTAAACTTCGAA+AGG 0.537251 4_1:+51432938 None:intergenic
CAAGTATGAATGGAGAGAGA+AGG 0.539088 4_1:+51435180 None:intergenic
ATTCCACATAGAGCTCCAAT+GGG 0.539365 4_1:-51433493 Msa0554190:CDS
TGAATGCAATATGTATTGCT+TGG 0.542264 4_1:-51434829 Msa0554190:CDS
AATTCCACATAGAGCTCCAA+TGG 0.542578 4_1:-51433494 Msa0554190:CDS
CAGAAACCCTTATCACATCA+TGG 0.550564 4_1:+51434359 None:intergenic
TCGATGAATGGCATTAGTAA+TGG 0.552753 4_1:-51433604 Msa0554190:CDS
TACACCGGCCTCAGGGAACA+AGG 0.553985 4_1:+51433210 None:intergenic
GCTACGGTCACAGACTTGGC+AGG 0.558501 4_1:+51434222 None:intergenic
TTGTTATCACTTTCTCAAAG+TGG 0.563310 4_1:-51433371 Msa0554190:three_prime_UTR
TCAACCTAGGCCTGGAAAAG+GGG 0.568882 4_1:-51434254 Msa0554190:CDS
TGAGTTACAGAACAGTTAAG+AGG 0.568904 4_1:-51433525 Msa0554190:CDS
TTGTAGTGGCGGGTGATGAA+GGG 0.569215 4_1:+51435237 None:intergenic
TGAATGAAAGGCCTCAACCT+AGG 0.570401 4_1:-51434267 Msa0554190:CDS
TTGGAACCTCCAAGAAGTTG+AGG 0.571156 4_1:-51433672 Msa0554190:CDS
AATGGCATTAGTAATGGAAG+TGG 0.573415 4_1:-51433598 Msa0554190:CDS
AGTCAGAAAGACGGGTCTGA+TGG 0.574132 4_1:-51433634 Msa0554190:CDS
ATGCTAAATGTATATATTGG+TGG 0.574221 4_1:-51433072 Msa0554190:three_prime_UTR
GTCACAGACTTGGCAGGTGT+TGG 0.575139 4_1:+51434228 None:intergenic
AGATATGACTTTAATGGCTG+GGG 0.576340 4_1:+51433345 None:intergenic
TGAAGAAGTGGTTGCAACCA+TGG 0.585315 4_1:+51434900 None:intergenic
AGAAGCTGAAGGAATCAAGA+AGG 0.586801 4_1:+51434200 None:intergenic
CTTTAAACTTCGAAAGGACA+AGG 0.593252 4_1:+51432944 None:intergenic
GATGGTGAAGAGTCGATGAA+TGG 0.596836 4_1:-51433616 Msa0554190:CDS
GTTCTGTAACTCACTGCTGT+TGG 0.597323 4_1:+51433535 None:intergenic
AAGAAAACAAGTGGCCACCA+TGG 0.602626 4_1:-51434917 Msa0554190:CDS
AGTCTTTACAGGTTCAGTTG+AGG 0.602664 4_1:-51433310 Msa0554190:three_prime_UTR
TGAAGGAATCAAGAAGGCTA+CGG 0.603890 4_1:+51434206 None:intergenic
AAGCAAGACAAACAGAACAA+AGG 0.605554 4_1:+51434790 None:intergenic
TATTGCTTGGATTGTAACAA+TGG 0.606739 4_1:-51434816 Msa0554190:CDS
AAAATGTTGAGTCAGAAAGA+CGG 0.611575 4_1:-51433643 Msa0554190:CDS
AGCAGGTAATAATATAAGTG+GGG 0.616086 4_1:-51433117 Msa0554190:three_prime_UTR
GAAATTTCTGGACATAGCAG+AGG 0.630359 4_1:-51434329 Msa0554190:CDS
ACCAAGAGAGCAGAAGCTGA+AGG 0.631097 4_1:+51434189 None:intergenic
AAATCCCTACACCGGCCTCA+GGG 0.631913 4_1:+51433203 None:intergenic
CACTCTTGTGTGAATCTGAG+TGG 0.634730 4_1:+51434850 None:intergenic
CTTCGAAAGGACAAGGACAA+TGG 0.640162 4_1:+51432951 None:intergenic
ACAATGAAGAAGAAAACAAG+TGG 0.648499 4_1:-51434926 Msa0554190:CDS
TCCACATAGAGCTCCAATGG+GGG 0.650434 4_1:-51433491 Msa0554190:CDS
GTTACAGAACAGTTAAGAGG+AGG 0.658849 4_1:-51433522 Msa0554190:CDS
CCACATAGAGCTCCAATGGG+GGG 0.658994 4_1:-51433490 Msa0554190:CDS
ATGGTCATGTACCAAACCAA+GGG 0.669200 4_1:+51432970 None:intergenic
AATGGTCATGTACCAAACCA+AGG 0.674933 4_1:+51432969 None:intergenic
AAGGTTGGAACTTGGAAGTG+GGG 0.677339 4_1:+51435206 None:intergenic
CACCTGAGCCTTGTTCCCTG+AGG 0.693600 4_1:-51433218 Msa0554190:three_prime_UTR
AGAGCAGTAAATCCCTACAC+CGG 0.717748 4_1:+51433195 None:intergenic
TTCCACATAGAGCTCCAATG+GGG 0.732872 4_1:-51433492 Msa0554190:CDS
AGAAGTGGTTGCAACCATGG+TGG 0.773987 4_1:+51434903 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCAAATTTTTTCAATT+GGG + chr4_1:51433201-51433220 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCAAT+TGG + chr4_1:51433202-51433221 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGGAATT+AGG - chr4_1:51433218-51433237 Msa0554190:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTGGAATTA+GGG - chr4_1:51433219-51433238 Msa0554190:three_prime_UTR 10.0%
!! ACAATATAATAATCAAATTT+AGG + chr4_1:51434291-51434310 None:intergenic 10.0%
!! TTAATAATAATGTTATATAG+TGG - chr4_1:51434739-51434758 Msa0554190:intron 10.0%
!! ATATAAGAAAAAAAAAATGT+TGG - chr4_1:51435040-51435059 Msa0554190:intron 10.0%
!!! AAAATCAAATTTTTTCAATT+GGG + chr4_1:51433201-51433220 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCAAT+TGG + chr4_1:51433202-51433221 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGGAATT+AGG - chr4_1:51433218-51433237 Msa0554190:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTGGAATTA+GGG - chr4_1:51433219-51433238 Msa0554190:three_prime_UTR 10.0%
!! ACAATATAATAATCAAATTT+AGG + chr4_1:51434291-51434310 None:intergenic 10.0%
!! TTAATAATAATGTTATATAG+TGG - chr4_1:51434739-51434758 Msa0554190:intron 10.0%
!! ATATAAGAAAAAAAAAATGT+TGG - chr4_1:51435040-51435059 Msa0554190:intron 10.0%
!! TTACAAAAAAAACATCAAAA+GGG + chr4_1:51433158-51433177 None:intergenic 15.0%
!! ATTACAAAAAAAACATCAAA+AGG + chr4_1:51433159-51433178 None:intergenic 15.0%
!!! TTTTGCTAAAATAAATAATG+TGG - chr4_1:51433733-51433752 Msa0554190:intron 15.0%
!! TTACAAAAAAAACATCAAAA+GGG + chr4_1:51433158-51433177 None:intergenic 15.0%
!! ATTACAAAAAAAACATCAAA+AGG + chr4_1:51433159-51433178 None:intergenic 15.0%
!!! TTTTGCTAAAATAAATAATG+TGG - chr4_1:51433733-51433752 Msa0554190:intron 15.0%
!! TTGATGAATAAGTAGTAAAT+TGG + chr4_1:51433060-51433079 None:intergenic 20.0%
!!! TTGATGATATTGTTGAAATT+GGG + chr4_1:51433094-51433113 None:intergenic 20.0%
!!! TTTGATGATATTGTTGAAAT+TGG + chr4_1:51433095-51433114 None:intergenic 20.0%
!!! ACTGATTTGAAACAAAAAAT+TGG + chr4_1:51433447-51433466 None:intergenic 20.0%
!!! TATCAAATTTTCACAGAATT+GGG + chr4_1:51433507-51433526 None:intergenic 20.0%
!!! TTATCAAATTTTCACAGAAT+TGG + chr4_1:51433508-51433527 None:intergenic 20.0%
!! TAATTATTGAATTGGTCAAA+GGG + chr4_1:51433591-51433610 None:intergenic 20.0%
!! TTAATTATTGAATTGGTCAA+AGG + chr4_1:51433592-51433611 None:intergenic 20.0%
!! ATAACAAGCAATTATTCAAA+TGG + chr4_1:51433625-51433644 None:intergenic 20.0%
!!! TTTATCAATGTTGATAGATA+AGG - chr4_1:51433789-51433808 Msa0554190:intron 20.0%
!! CATCAAGTCAAAATAATTAA+GGG + chr4_1:51434084-51434103 None:intergenic 20.0%
!!! TCTATTGTAAAGTGTTAAAA+TGG - chr4_1:51434198-51434217 Msa0554190:CDS 20.0%
!!! AAAGTGTTAAAATGGTTAAA+TGG - chr4_1:51434206-51434225 Msa0554190:CDS 20.0%
!!! TAAAAAGTATGCAAACATTA+AGG - chr4_1:51434384-51434403 Msa0554190:intron 20.0%
!!! CATTTTTCTTACTTTTTCAA+AGG + chr4_1:51434426-51434445 None:intergenic 20.0%
!!! ATTTTTTCTTGTTAGATTGT+TGG - chr4_1:51434491-51434510 Msa0554190:intron 20.0%
!!! AACAACTGTTGTATATTTTT+AGG + chr4_1:51434796-51434815 None:intergenic 20.0%
!!! ACATAAAATCATATTTTCTG+AGG + chr4_1:51434927-51434946 None:intergenic 20.0%
!! TACATTGTATAGGAAAAAAT+GGG - chr4_1:51435009-51435028 Msa0554190:intron 20.0%
!!! TAGTATATGTAGTATTGTTT+TGG - chr4_1:51435261-51435280 Msa0554190:five_prime_UTR 20.0%
!! TTGATGAATAAGTAGTAAAT+TGG + chr4_1:51433060-51433079 None:intergenic 20.0%
!!! TTGATGATATTGTTGAAATT+GGG + chr4_1:51433094-51433113 None:intergenic 20.0%
!!! TTTGATGATATTGTTGAAAT+TGG + chr4_1:51433095-51433114 None:intergenic 20.0%
!!! ACTGATTTGAAACAAAAAAT+TGG + chr4_1:51433447-51433466 None:intergenic 20.0%
!!! TATCAAATTTTCACAGAATT+GGG + chr4_1:51433507-51433526 None:intergenic 20.0%
!!! TTATCAAATTTTCACAGAAT+TGG + chr4_1:51433508-51433527 None:intergenic 20.0%
!! TAATTATTGAATTGGTCAAA+GGG + chr4_1:51433591-51433610 None:intergenic 20.0%
!! TTAATTATTGAATTGGTCAA+AGG + chr4_1:51433592-51433611 None:intergenic 20.0%
!! ATAACAAGCAATTATTCAAA+TGG + chr4_1:51433625-51433644 None:intergenic 20.0%
!!! TTTATCAATGTTGATAGATA+AGG - chr4_1:51433789-51433808 Msa0554190:intron 20.0%
!! CATCAAGTCAAAATAATTAA+GGG + chr4_1:51434084-51434103 None:intergenic 20.0%
!!! TCTATTGTAAAGTGTTAAAA+TGG - chr4_1:51434198-51434217 Msa0554190:CDS 20.0%
!!! AAAGTGTTAAAATGGTTAAA+TGG - chr4_1:51434206-51434225 Msa0554190:CDS 20.0%
!!! TAAAAAGTATGCAAACATTA+AGG - chr4_1:51434384-51434403 Msa0554190:intron 20.0%
!!! CATTTTTCTTACTTTTTCAA+AGG + chr4_1:51434426-51434445 None:intergenic 20.0%
!!! ATTTTTTCTTGTTAGATTGT+TGG - chr4_1:51434491-51434510 Msa0554190:intron 20.0%
!!! AACAACTGTTGTATATTTTT+AGG + chr4_1:51434796-51434815 None:intergenic 20.0%
!!! ACATAAAATCATATTTTCTG+AGG + chr4_1:51434927-51434946 None:intergenic 20.0%
!! TACATTGTATAGGAAAAAAT+GGG - chr4_1:51435009-51435028 Msa0554190:intron 20.0%
!!! TAGTATATGTAGTATTGTTT+TGG - chr4_1:51435261-51435280 Msa0554190:five_prime_UTR 20.0%
! ATGAATAAGTAGTAAATTGG+AGG + chr4_1:51433057-51433076 None:intergenic 25.0%
! AAATCATCATATCTCAATCA+TGG - chr4_1:51433113-51433132 Msa0554190:three_prime_UTR 25.0%
!!! TTTTTTTTTTGGAATTAGGG+AGG - chr4_1:51433222-51433241 Msa0554190:three_prime_UTR 25.0%
! TCAAATCAGTTAATTGTGTT+TGG - chr4_1:51433457-51433476 Msa0554190:exon 25.0%
!!! AGATTGTGTTTTTGAATGAA+AGG - chr4_1:51433903-51433922 Msa0554190:intron 25.0%
! GCATCAAGTCAAAATAATTA+AGG + chr4_1:51434085-51434104 None:intergenic 25.0%
!!! ATTATTTTGACTTGATGCTA+TGG - chr4_1:51434087-51434106 Msa0554190:intron 25.0%
!! ACTTTTTACAGAAAAGAAGT+AGG + chr4_1:51434372-51434391 None:intergenic 25.0%
! CTACATTGTATAGGAAAAAA+TGG - chr4_1:51435008-51435027 Msa0554190:intron 25.0%
! ACATTGTATAGGAAAAAATG+GGG - chr4_1:51435010-51435029 Msa0554190:intron 25.0%
! AAAAAAAAATGTTGGAAAGC+AGG - chr4_1:51435048-51435067 Msa0554190:intron 25.0%
! AAAGCAGGTAATAATATAAG+TGG - chr4_1:51435063-51435082 Msa0554190:intron 25.0%
! AAGCAGGTAATAATATAAGT+GGG - chr4_1:51435064-51435083 Msa0554190:intron 25.0%
! GTGATGCTAAATGTATATAT+TGG - chr4_1:51435107-51435126 Msa0554190:five_prime_UTR 25.0%
! ATGCTAAATGTATATATTGG+TGG - chr4_1:51435110-51435129 Msa0554190:five_prime_UTR 25.0%
!! TATATTGGTGGTTTATAGAA+AGG - chr4_1:51435122-51435141 Msa0554190:five_prime_UTR 25.0%
!! GTGTATTAATTTTATTCCCT+TGG - chr4_1:51435196-51435215 Msa0554190:five_prime_UTR 25.0%
!! TTAATTTTATTCCCTTGGTT+TGG - chr4_1:51435201-51435220 Msa0554190:five_prime_UTR 25.0%
! ATACTACTTTAAACTTCGAA+AGG + chr4_1:51435247-51435266 None:intergenic 25.0%
! ATGAATAAGTAGTAAATTGG+AGG + chr4_1:51433057-51433076 None:intergenic 25.0%
! AAATCATCATATCTCAATCA+TGG - chr4_1:51433113-51433132 Msa0554190:three_prime_UTR 25.0%
!!! TTTTTTTTTTGGAATTAGGG+AGG - chr4_1:51433222-51433241 Msa0554190:three_prime_UTR 25.0%
! TCAAATCAGTTAATTGTGTT+TGG - chr4_1:51433457-51433476 Msa0554190:exon 25.0%
!!! AGATTGTGTTTTTGAATGAA+AGG - chr4_1:51433903-51433922 Msa0554190:intron 25.0%
! GCATCAAGTCAAAATAATTA+AGG + chr4_1:51434085-51434104 None:intergenic 25.0%
!!! ATTATTTTGACTTGATGCTA+TGG - chr4_1:51434087-51434106 Msa0554190:intron 25.0%
!! ACTTTTTACAGAAAAGAAGT+AGG + chr4_1:51434372-51434391 None:intergenic 25.0%
! CTACATTGTATAGGAAAAAA+TGG - chr4_1:51435008-51435027 Msa0554190:intron 25.0%
! ACATTGTATAGGAAAAAATG+GGG - chr4_1:51435010-51435029 Msa0554190:intron 25.0%
! AAAAAAAAATGTTGGAAAGC+AGG - chr4_1:51435048-51435067 Msa0554190:intron 25.0%
! AAAGCAGGTAATAATATAAG+TGG - chr4_1:51435063-51435082 Msa0554190:intron 25.0%
! AAGCAGGTAATAATATAAGT+GGG - chr4_1:51435064-51435083 Msa0554190:intron 25.0%
! GTGATGCTAAATGTATATAT+TGG - chr4_1:51435107-51435126 Msa0554190:five_prime_UTR 25.0%
! ATGCTAAATGTATATATTGG+TGG - chr4_1:51435110-51435129 Msa0554190:five_prime_UTR 25.0%
!! TATATTGGTGGTTTATAGAA+AGG - chr4_1:51435122-51435141 Msa0554190:five_prime_UTR 25.0%
!! GTGTATTAATTTTATTCCCT+TGG - chr4_1:51435196-51435215 Msa0554190:five_prime_UTR 25.0%
!! TTAATTTTATTCCCTTGGTT+TGG - chr4_1:51435201-51435220 Msa0554190:five_prime_UTR 25.0%
! ATACTACTTTAAACTTCGAA+AGG + chr4_1:51435247-51435266 None:intergenic 25.0%
GAACTTTGAACAAGTATGAA+TGG + chr4_1:51433015-51433034 None:intergenic 30.0%
ACAATGAAGAAGAAAACAAG+TGG - chr4_1:51433256-51433275 Msa0554190:three_prime_UTR 30.0%
! AAGAAACTTGTTTGAAGAAG+TGG + chr4_1:51433297-51433316 None:intergenic 30.0%
TGAATGCAATATGTATTGCT+TGG - chr4_1:51433353-51433372 Msa0554190:three_prime_UTR 30.0%
TATTGCTTGGATTGTAACAA+TGG - chr4_1:51433366-51433385 Msa0554190:three_prime_UTR 30.0%
CAAACAACATAGAACAATTC+AGG - chr4_1:51433419-51433438 Msa0554190:three_prime_UTR 30.0%
TCAGTTAATTGTGTTTGGTT+TGG - chr4_1:51433462-51433481 Msa0554190:exon 30.0%
! ATCAATGTTGATAGATAAGG+AGG - chr4_1:51433792-51433811 Msa0554190:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr4_1:51433817-51433836 Msa0554190:intron 30.0%
!! TTCTGAGATACAGAAATTTC+TGG - chr4_1:51433841-51433860 Msa0554190:intron 30.0%
CTTTGCACTGTTTATAACAT+AGG + chr4_1:51433885-51433904 None:intergenic 30.0%
CAGTTAGATGCATATGAAAT+TGG + chr4_1:51434053-51434072 None:intergenic 30.0%
! TTTTACAGAAAAGAAGTAGG+AGG + chr4_1:51434369-51434388 None:intergenic 30.0%
! AGAAAAATGATGATGAGAGT+AGG - chr4_1:51434437-51434456 Msa0554190:intron 30.0%
TTTATTCTTCCTCAACTTCT+TGG + chr4_1:51434522-51434541 None:intergenic 30.0%
AAAATGTTGAGTCAGAAAGA+CGG - chr4_1:51434539-51434558 Msa0554190:intron 30.0%
TTGTTATCACTTTCTCAAAG+TGG - chr4_1:51434811-51434830 Msa0554190:CDS 30.0%
CAAACCAGATATGACTTTAA+TGG + chr4_1:51434846-51434865 None:intergenic 30.0%
! TTAAAGTCATATCTGGTTTG+AGG - chr4_1:51434846-51434865 Msa0554190:CDS 30.0%
TTTACTGCTCTACATTGTAT+AGG - chr4_1:51434999-51435018 Msa0554190:intron 30.0%
CATTGTATAGGAAAAAATGG+GGG - chr4_1:51435011-51435030 Msa0554190:intron 30.0%
AGCAGGTAATAATATAAGTG+GGG - chr4_1:51435065-51435084 Msa0554190:intron 30.0%
TATAGCATTAGCATCTAGTT+TGG - chr4_1:51435150-51435169 Msa0554190:five_prime_UTR 30.0%
GAACTTTGAACAAGTATGAA+TGG + chr4_1:51433015-51433034 None:intergenic 30.0%
ACAATGAAGAAGAAAACAAG+TGG - chr4_1:51433256-51433275 Msa0554190:three_prime_UTR 30.0%
! AAGAAACTTGTTTGAAGAAG+TGG + chr4_1:51433297-51433316 None:intergenic 30.0%
TGAATGCAATATGTATTGCT+TGG - chr4_1:51433353-51433372 Msa0554190:three_prime_UTR 30.0%
TATTGCTTGGATTGTAACAA+TGG - chr4_1:51433366-51433385 Msa0554190:three_prime_UTR 30.0%
CAAACAACATAGAACAATTC+AGG - chr4_1:51433419-51433438 Msa0554190:three_prime_UTR 30.0%
TCAGTTAATTGTGTTTGGTT+TGG - chr4_1:51433462-51433481 Msa0554190:exon 30.0%
! ATCAATGTTGATAGATAAGG+AGG - chr4_1:51433792-51433811 Msa0554190:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr4_1:51433817-51433836 Msa0554190:intron 30.0%
!! TTCTGAGATACAGAAATTTC+TGG - chr4_1:51433841-51433860 Msa0554190:intron 30.0%
CTTTGCACTGTTTATAACAT+AGG + chr4_1:51433885-51433904 None:intergenic 30.0%
CAGTTAGATGCATATGAAAT+TGG + chr4_1:51434053-51434072 None:intergenic 30.0%
! TTTTACAGAAAAGAAGTAGG+AGG + chr4_1:51434369-51434388 None:intergenic 30.0%
! AGAAAAATGATGATGAGAGT+AGG - chr4_1:51434437-51434456 Msa0554190:intron 30.0%
TTTATTCTTCCTCAACTTCT+TGG + chr4_1:51434522-51434541 None:intergenic 30.0%
AAAATGTTGAGTCAGAAAGA+CGG - chr4_1:51434539-51434558 Msa0554190:intron 30.0%
TTGTTATCACTTTCTCAAAG+TGG - chr4_1:51434811-51434830 Msa0554190:CDS 30.0%
CAAACCAGATATGACTTTAA+TGG + chr4_1:51434846-51434865 None:intergenic 30.0%
! TTAAAGTCATATCTGGTTTG+AGG - chr4_1:51434846-51434865 Msa0554190:CDS 30.0%
TTTACTGCTCTACATTGTAT+AGG - chr4_1:51434999-51435018 Msa0554190:intron 30.0%
CATTGTATAGGAAAAAATGG+GGG - chr4_1:51435011-51435030 Msa0554190:intron 30.0%
AGCAGGTAATAATATAAGTG+GGG - chr4_1:51435065-51435084 Msa0554190:intron 30.0%
TATAGCATTAGCATCTAGTT+TGG - chr4_1:51435150-51435169 Msa0554190:five_prime_UTR 30.0%
AAGTATGAATGGAGAGAGAA+GGG + chr4_1:51433004-51433023 None:intergenic 35.0%
!!! TTTTTTTGGAATTAGGGAGG+TGG - chr4_1:51433225-51433244 Msa0554190:three_prime_UTR 35.0%
AGCAAGACAAACAGAACAAA+GGG + chr4_1:51433394-51433413 None:intergenic 35.0%
AAGCAAGACAAACAGAACAA+AGG + chr4_1:51433395-51433414 None:intergenic 35.0%
! TGTTGATTGTTCTGCTTTGA+TGG - chr4_1:51433671-51433690 Msa0554190:CDS 35.0%
CTTCATACCATGATGTGATA+AGG - chr4_1:51433816-51433835 Msa0554190:intron 35.0%
!!! TTTTGACTTGATGCTATGGT+TGG - chr4_1:51434091-51434110 Msa0554190:intron 35.0%
CAATAGAAAACTTTCCACAC+AGG + chr4_1:51434185-51434204 None:intergenic 35.0%
TGATCCAAAAATGCAGTTTG+GGG + chr4_1:51434235-51434254 None:intergenic 35.0%
GTGATCCAAAAATGCAGTTT+GGG + chr4_1:51434236-51434255 None:intergenic 35.0%
TGTGATCCAAAAATGCAGTT+TGG + chr4_1:51434237-51434256 None:intergenic 35.0%
! AAAATGATGATGAGAGTAGG+TGG - chr4_1:51434440-51434459 Msa0554190:intron 35.0%
AAATGTTGAGTCAGAAAGAC+GGG - chr4_1:51434540-51434559 Msa0554190:intron 35.0%
TCGATGAATGGCATTAGTAA+TGG - chr4_1:51434578-51434597 Msa0554190:intron 35.0%
! AATGGCATTAGTAATGGAAG+TGG - chr4_1:51434584-51434603 Msa0554190:intron 35.0%
TGAGTTACAGAACAGTTAAG+AGG - chr4_1:51434657-51434676 Msa0554190:intron 35.0%
AGATATGACTTTAATGGCTG+GGG + chr4_1:51434840-51434859 None:intergenic 35.0%
CAGATATGACTTTAATGGCT+GGG + chr4_1:51434841-51434860 None:intergenic 35.0%
!! GTTTGAGGATTAGTCTTTAC+AGG - chr4_1:51434861-51434880 Msa0554190:CDS 35.0%
!!! TCTGAGGACACAACTTTTTT+GGG + chr4_1:51434911-51434930 None:intergenic 35.0%
!!! TTCTGAGGACACAACTTTTT+TGG + chr4_1:51434912-51434931 None:intergenic 35.0%
AAGTGGGGAATTTATTGTAC+TGG - chr4_1:51435080-51435099 Msa0554190:five_prime_UTR 35.0%
CTTTAAACTTCGAAAGGACA+AGG + chr4_1:51435241-51435260 None:intergenic 35.0%
!!! TGTAGTATTGTTTTGGCTAG+TGG - chr4_1:51435268-51435287 Msa0554190:five_prime_UTR 35.0%
AAGTATGAATGGAGAGAGAA+GGG + chr4_1:51433004-51433023 None:intergenic 35.0%
!!! TTTTTTTGGAATTAGGGAGG+TGG - chr4_1:51433225-51433244 Msa0554190:three_prime_UTR 35.0%
AGCAAGACAAACAGAACAAA+GGG + chr4_1:51433394-51433413 None:intergenic 35.0%
AAGCAAGACAAACAGAACAA+AGG + chr4_1:51433395-51433414 None:intergenic 35.0%
! TGTTGATTGTTCTGCTTTGA+TGG - chr4_1:51433671-51433690 Msa0554190:CDS 35.0%
CTTCATACCATGATGTGATA+AGG - chr4_1:51433816-51433835 Msa0554190:intron 35.0%
!!! TTTTGACTTGATGCTATGGT+TGG - chr4_1:51434091-51434110 Msa0554190:intron 35.0%
CAATAGAAAACTTTCCACAC+AGG + chr4_1:51434185-51434204 None:intergenic 35.0%
TGATCCAAAAATGCAGTTTG+GGG + chr4_1:51434235-51434254 None:intergenic 35.0%
GTGATCCAAAAATGCAGTTT+GGG + chr4_1:51434236-51434255 None:intergenic 35.0%
TGTGATCCAAAAATGCAGTT+TGG + chr4_1:51434237-51434256 None:intergenic 35.0%
! AAAATGATGATGAGAGTAGG+TGG - chr4_1:51434440-51434459 Msa0554190:intron 35.0%
AAATGTTGAGTCAGAAAGAC+GGG - chr4_1:51434540-51434559 Msa0554190:intron 35.0%
TCGATGAATGGCATTAGTAA+TGG - chr4_1:51434578-51434597 Msa0554190:intron 35.0%
! AATGGCATTAGTAATGGAAG+TGG - chr4_1:51434584-51434603 Msa0554190:intron 35.0%
TGAGTTACAGAACAGTTAAG+AGG - chr4_1:51434657-51434676 Msa0554190:intron 35.0%
AGATATGACTTTAATGGCTG+GGG + chr4_1:51434840-51434859 None:intergenic 35.0%
CAGATATGACTTTAATGGCT+GGG + chr4_1:51434841-51434860 None:intergenic 35.0%
!! GTTTGAGGATTAGTCTTTAC+AGG - chr4_1:51434861-51434880 Msa0554190:CDS 35.0%
!!! TCTGAGGACACAACTTTTTT+GGG + chr4_1:51434911-51434930 None:intergenic 35.0%
!!! TTCTGAGGACACAACTTTTT+TGG + chr4_1:51434912-51434931 None:intergenic 35.0%
AAGTGGGGAATTTATTGTAC+TGG - chr4_1:51435080-51435099 Msa0554190:five_prime_UTR 35.0%
CTTTAAACTTCGAAAGGACA+AGG + chr4_1:51435241-51435260 None:intergenic 35.0%
!!! TGTAGTATTGTTTTGGCTAG+TGG - chr4_1:51435268-51435287 Msa0554190:five_prime_UTR 35.0%
AAAGGTTGGAACTTGGAAGT+GGG + chr4_1:51432980-51432999 None:intergenic 40.0%
AAAAGGTTGGAACTTGGAAG+TGG + chr4_1:51432981-51433000 None:intergenic 40.0%
CAAGTATGAATGGAGAGAGA+AGG + chr4_1:51433005-51433024 None:intergenic 40.0%
GATTGTTCTGCTTTGATGGA+TGG - chr4_1:51433675-51433694 Msa0554190:CDS 40.0%
CAGAAACCCTTATCACATCA+TGG + chr4_1:51433826-51433845 None:intergenic 40.0%
! GAAATTTCTGGACATAGCAG+AGG - chr4_1:51433853-51433872 Msa0554190:intron 40.0%
TGAAGGAATCAAGAAGGCTA+CGG + chr4_1:51433979-51433998 None:intergenic 40.0%
AGAAGCTGAAGGAATCAAGA+AGG + chr4_1:51433985-51434004 None:intergenic 40.0%
!! TGATGCTATGGTTGGTAATC+TGG - chr4_1:51434099-51434118 Msa0554190:intron 40.0%
! TTGGTAATCTGGAGTTCAGT+CGG - chr4_1:51434110-51434129 Msa0554190:intron 40.0%
TCAGTCGGGTAAGTAAAGTT+TGG - chr4_1:51434125-51434144 Msa0554190:intron 40.0%
! GATTCCCCAAACTGCATTTT+TGG - chr4_1:51434228-51434247 Msa0554190:CDS 40.0%
ATTCTTCCTCAACTTCTTGG+AGG + chr4_1:51434519-51434538 None:intergenic 40.0%
GTTACAGAACAGTTAAGAGG+AGG - chr4_1:51434660-51434679 Msa0554190:intron 40.0%
AGAACAGTTAAGAGGAGGAA+AGG - chr4_1:51434665-51434684 Msa0554190:intron 40.0%
AATTCCACATAGAGCTCCAA+TGG - chr4_1:51434688-51434707 Msa0554190:intron 40.0%
ATTCCACATAGAGCTCCAAT+GGG - chr4_1:51434689-51434708 Msa0554190:intron 40.0%
CCAGATATGACTTTAATGGC+TGG + chr4_1:51434842-51434861 None:intergenic 40.0%
CCAGCCATTAAAGTCATATC+TGG - chr4_1:51434839-51434858 Msa0554190:CDS 40.0%
AGTCTTTACAGGTTCAGTTG+AGG - chr4_1:51434872-51434891 Msa0554190:CDS 40.0%
!!! CTGAGGACACAACTTTTTTG+GGG + chr4_1:51434910-51434929 None:intergenic 40.0%
ATGGTCATGTACCAAACCAA+GGG + chr4_1:51435215-51435234 None:intergenic 40.0%
AATGGTCATGTACCAAACCA+AGG + chr4_1:51435216-51435235 None:intergenic 40.0%
AAAGGTTGGAACTTGGAAGT+GGG + chr4_1:51432980-51432999 None:intergenic 40.0%
AAAAGGTTGGAACTTGGAAG+TGG + chr4_1:51432981-51433000 None:intergenic 40.0%
CAAGTATGAATGGAGAGAGA+AGG + chr4_1:51433005-51433024 None:intergenic 40.0%
GATTGTTCTGCTTTGATGGA+TGG - chr4_1:51433675-51433694 Msa0554190:CDS 40.0%
CAGAAACCCTTATCACATCA+TGG + chr4_1:51433826-51433845 None:intergenic 40.0%
! GAAATTTCTGGACATAGCAG+AGG - chr4_1:51433853-51433872 Msa0554190:intron 40.0%
TGAAGGAATCAAGAAGGCTA+CGG + chr4_1:51433979-51433998 None:intergenic 40.0%
AGAAGCTGAAGGAATCAAGA+AGG + chr4_1:51433985-51434004 None:intergenic 40.0%
!! TGATGCTATGGTTGGTAATC+TGG - chr4_1:51434099-51434118 Msa0554190:intron 40.0%
! TTGGTAATCTGGAGTTCAGT+CGG - chr4_1:51434110-51434129 Msa0554190:intron 40.0%
TCAGTCGGGTAAGTAAAGTT+TGG - chr4_1:51434125-51434144 Msa0554190:intron 40.0%
! GATTCCCCAAACTGCATTTT+TGG - chr4_1:51434228-51434247 Msa0554190:CDS 40.0%
ATTCTTCCTCAACTTCTTGG+AGG + chr4_1:51434519-51434538 None:intergenic 40.0%
GTTACAGAACAGTTAAGAGG+AGG - chr4_1:51434660-51434679 Msa0554190:intron 40.0%
AGAACAGTTAAGAGGAGGAA+AGG - chr4_1:51434665-51434684 Msa0554190:intron 40.0%
AATTCCACATAGAGCTCCAA+TGG - chr4_1:51434688-51434707 Msa0554190:intron 40.0%
ATTCCACATAGAGCTCCAAT+GGG - chr4_1:51434689-51434708 Msa0554190:intron 40.0%
CCAGATATGACTTTAATGGC+TGG + chr4_1:51434842-51434861 None:intergenic 40.0%
CCAGCCATTAAAGTCATATC+TGG - chr4_1:51434839-51434858 Msa0554190:CDS 40.0%
AGTCTTTACAGGTTCAGTTG+AGG - chr4_1:51434872-51434891 Msa0554190:CDS 40.0%
!!! CTGAGGACACAACTTTTTTG+GGG + chr4_1:51434910-51434929 None:intergenic 40.0%
ATGGTCATGTACCAAACCAA+GGG + chr4_1:51435215-51435234 None:intergenic 40.0%
AATGGTCATGTACCAAACCA+AGG + chr4_1:51435216-51435235 None:intergenic 40.0%
AAGGTTGGAACTTGGAAGTG+GGG + chr4_1:51432979-51432998 None:intergenic 45.0%
GAAGGGAAAAGGTTGGAACT+TGG + chr4_1:51432987-51433006 None:intergenic 45.0%
GAATGGAGAGAGAAGGGAAA+AGG + chr4_1:51432998-51433017 None:intergenic 45.0%
!!! TTTTGGAATTAGGGAGGTGG+AGG - chr4_1:51433228-51433247 Msa0554190:three_prime_UTR 45.0%
AAGAAAACAAGTGGCCACCA+TGG - chr4_1:51433265-51433284 Msa0554190:three_prime_UTR 45.0%
TGAAGAAGTGGTTGCAACCA+TGG + chr4_1:51433285-51433304 None:intergenic 45.0%
CACTCTTGTGTGAATCTGAG+TGG + chr4_1:51433335-51433354 None:intergenic 45.0%
! GTTCTGCTTTGATGGATGGA+TGG - chr4_1:51433679-51433698 Msa0554190:CDS 45.0%
TGAATGAAAGGCCTCAACCT+AGG - chr4_1:51433915-51433934 Msa0554190:intron 45.0%
CTTCTGCTCTCTTGGTTGTA+AGG - chr4_1:51434000-51434019 Msa0554190:intron 45.0%
! TGGTAATCTGGAGTTCAGTC+GGG - chr4_1:51434111-51434130 Msa0554190:intron 45.0%
TTGAAGCTGATTGACCTGTG+TGG - chr4_1:51434168-51434187 Msa0554190:intron 45.0%
TTGGAACCTCCAAGAAGTTG+AGG - chr4_1:51434510-51434529 Msa0554190:intron 45.0%
GATGGTGAAGAGTCGATGAA+TGG - chr4_1:51434566-51434585 Msa0554190:intron 45.0%
GTTCTGTAACTCACTGCTGT+TGG + chr4_1:51434650-51434669 None:intergenic 45.0%
TTCCACATAGAGCTCCAATG+GGG - chr4_1:51434690-51434709 Msa0554190:intron 45.0%
ATAATGATTCCTCCCCCCAT+TGG + chr4_1:51434707-51434726 None:intergenic 45.0%
AGAGCAGTAAATCCCTACAC+CGG + chr4_1:51434990-51435009 None:intergenic 45.0%
CTTCGAAAGGACAAGGACAA+TGG + chr4_1:51435234-51435253 None:intergenic 45.0%
!! TTGGCTAGTGGACTAGTTAG+TGG - chr4_1:51435280-51435299 Msa0554190:five_prime_UTR 45.0%
AAGGTTGGAACTTGGAAGTG+GGG + chr4_1:51432979-51432998 None:intergenic 45.0%
GAAGGGAAAAGGTTGGAACT+TGG + chr4_1:51432987-51433006 None:intergenic 45.0%
GAATGGAGAGAGAAGGGAAA+AGG + chr4_1:51432998-51433017 None:intergenic 45.0%
!!! TTTTGGAATTAGGGAGGTGG+AGG - chr4_1:51433228-51433247 Msa0554190:three_prime_UTR 45.0%
AAGAAAACAAGTGGCCACCA+TGG - chr4_1:51433265-51433284 Msa0554190:three_prime_UTR 45.0%
TGAAGAAGTGGTTGCAACCA+TGG + chr4_1:51433285-51433304 None:intergenic 45.0%
CACTCTTGTGTGAATCTGAG+TGG + chr4_1:51433335-51433354 None:intergenic 45.0%
! GTTCTGCTTTGATGGATGGA+TGG - chr4_1:51433679-51433698 Msa0554190:CDS 45.0%
TGAATGAAAGGCCTCAACCT+AGG - chr4_1:51433915-51433934 Msa0554190:intron 45.0%
CTTCTGCTCTCTTGGTTGTA+AGG - chr4_1:51434000-51434019 Msa0554190:intron 45.0%
! TGGTAATCTGGAGTTCAGTC+GGG - chr4_1:51434111-51434130 Msa0554190:intron 45.0%
TTGAAGCTGATTGACCTGTG+TGG - chr4_1:51434168-51434187 Msa0554190:intron 45.0%
TTGGAACCTCCAAGAAGTTG+AGG - chr4_1:51434510-51434529 Msa0554190:intron 45.0%
GATGGTGAAGAGTCGATGAA+TGG - chr4_1:51434566-51434585 Msa0554190:intron 45.0%
GTTCTGTAACTCACTGCTGT+TGG + chr4_1:51434650-51434669 None:intergenic 45.0%
TTCCACATAGAGCTCCAATG+GGG - chr4_1:51434690-51434709 Msa0554190:intron 45.0%
ATAATGATTCCTCCCCCCAT+TGG + chr4_1:51434707-51434726 None:intergenic 45.0%
AGAGCAGTAAATCCCTACAC+CGG + chr4_1:51434990-51435009 None:intergenic 45.0%
CTTCGAAAGGACAAGGACAA+TGG + chr4_1:51435234-51435253 None:intergenic 45.0%
!!! ATTTGATTTTTTTTTTTTTT+TGG - chr4_1:51433211-51433230 Msa0554190:three_prime_UTR 5.0%
!!! ATTTGATAATAAAATAATTT+TGG - chr4_1:51433519-51433538 Msa0554190:CDS 5.0%
!!! ATTTTTTTTAATTATTGAAT+TGG + chr4_1:51433599-51433618 None:intergenic 5.0%
!!! GATAATTTTTATTTAAATTA+TGG - chr4_1:51433701-51433720 Msa0554190:intron 5.0%
!!! ATTTGATTTTTTTTTTTTTT+TGG - chr4_1:51433211-51433230 Msa0554190:three_prime_UTR 5.0%
!!! ATTTGATAATAAAATAATTT+TGG - chr4_1:51433519-51433538 Msa0554190:CDS 5.0%
!!! ATTTTTTTTAATTATTGAAT+TGG + chr4_1:51433599-51433618 None:intergenic 5.0%
!!! GATAATTTTTATTTAAATTA+TGG - chr4_1:51433701-51433720 Msa0554190:intron 5.0%
!! TTGTAGTGGCGGGTGATGAA+GGG + chr4_1:51432948-51432967 None:intergenic 50.0%
!! TTTGTAGTGGCGGGTGATGA+AGG + chr4_1:51432949-51432968 None:intergenic 50.0%
! GGCTATGCTTTTGTAGTGGC+GGG + chr4_1:51432958-51432977 None:intergenic 50.0%
! GGGCTATGCTTTTGTAGTGG+CGG + chr4_1:51432959-51432978 None:intergenic 50.0%
! GTGGGGCTATGCTTTTGTAG+TGG + chr4_1:51432962-51432981 None:intergenic 50.0%
GGAGAGAGAAGGGAAAAGGT+TGG + chr4_1:51432994-51433013 None:intergenic 50.0%
AGAAGTGGTTGCAACCATGG+TGG + chr4_1:51433282-51433301 None:intergenic 50.0%
CTCAACCTAGGCCTGGAAAA+GGG - chr4_1:51433927-51433946 Msa0554190:intron 50.0%
TCAACCTAGGCCTGGAAAAG+GGG - chr4_1:51433928-51433947 Msa0554190:intron 50.0%
TCCTTCAGCTTCTGCTCTCT+TGG - chr4_1:51433992-51434011 Msa0554190:intron 50.0%
ACCAAGAGAGCAGAAGCTGA+AGG + chr4_1:51433996-51434015 None:intergenic 50.0%
AGTCAGAAAGACGGGTCTGA+TGG - chr4_1:51434548-51434567 Msa0554190:intron 50.0%
TAACTCACTGCTGTTGGAGG+TGG + chr4_1:51434644-51434663 None:intergenic 50.0%
CTGTAACTCACTGCTGTTGG+AGG + chr4_1:51434647-51434666 None:intergenic 50.0%
TCCACATAGAGCTCCAATGG+GGG - chr4_1:51434691-51434710 Msa0554190:intron 50.0%
!! TTGTAGTGGCGGGTGATGAA+GGG + chr4_1:51432948-51432967 None:intergenic 50.0%
!! TTTGTAGTGGCGGGTGATGA+AGG + chr4_1:51432949-51432968 None:intergenic 50.0%
! GGCTATGCTTTTGTAGTGGC+GGG + chr4_1:51432958-51432977 None:intergenic 50.0%
! GGGCTATGCTTTTGTAGTGG+CGG + chr4_1:51432959-51432978 None:intergenic 50.0%
! GTGGGGCTATGCTTTTGTAG+TGG + chr4_1:51432962-51432981 None:intergenic 50.0%
GGAGAGAGAAGGGAAAAGGT+TGG + chr4_1:51432994-51433013 None:intergenic 50.0%
AGAAGTGGTTGCAACCATGG+TGG + chr4_1:51433282-51433301 None:intergenic 50.0%
CTCAACCTAGGCCTGGAAAA+GGG - chr4_1:51433927-51433946 Msa0554190:intron 50.0%
TCAACCTAGGCCTGGAAAAG+GGG - chr4_1:51433928-51433947 Msa0554190:intron 50.0%
TCCTTCAGCTTCTGCTCTCT+TGG - chr4_1:51433992-51434011 Msa0554190:intron 50.0%
ACCAAGAGAGCAGAAGCTGA+AGG + chr4_1:51433996-51434015 None:intergenic 50.0%
AGTCAGAAAGACGGGTCTGA+TGG - chr4_1:51434548-51434567 Msa0554190:intron 50.0%
TAACTCACTGCTGTTGGAGG+TGG + chr4_1:51434644-51434663 None:intergenic 50.0%
CTGTAACTCACTGCTGTTGG+AGG + chr4_1:51434647-51434666 None:intergenic 50.0%
TCCACATAGAGCTCCAATGG+GGG - chr4_1:51434691-51434710 Msa0554190:intron 50.0%
TGGAATTAGGGAGGTGGAGG+AGG - chr4_1:51433231-51433250 Msa0554190:three_prime_UTR 55.0%
! CCTTTTCCAGGCCTAGGTTG+AGG + chr4_1:51433929-51433948 None:intergenic 55.0%
CCTCAACCTAGGCCTGGAAA+AGG - chr4_1:51433926-51433945 Msa0554190:intron 55.0%
!!! GTGTTGGTGACCCCTTTTCC+AGG + chr4_1:51433941-51433960 None:intergenic 55.0%
GTCACAGACTTGGCAGGTGT+TGG + chr4_1:51433957-51433976 None:intergenic 55.0%
GAAGGCTACGGTCACAGACT+TGG + chr4_1:51433967-51433986 None:intergenic 55.0%
! GCTGTTGGAGGTGGTGTTGA+AGG + chr4_1:51434635-51434654 None:intergenic 55.0%
CCACATAGAGCTCCAATGGG+GGG - chr4_1:51434692-51434711 Msa0554190:intron 55.0%
AAATCCCTACACCGGCCTCA+GGG + chr4_1:51434982-51435001 None:intergenic 55.0%
TAAATCCCTACACCGGCCTC+AGG + chr4_1:51434983-51435002 None:intergenic 55.0%
TGGAATTAGGGAGGTGGAGG+AGG - chr4_1:51433231-51433250 Msa0554190:three_prime_UTR 55.0%
! CCTTTTCCAGGCCTAGGTTG+AGG + chr4_1:51433929-51433948 None:intergenic 55.0%
CCTCAACCTAGGCCTGGAAA+AGG - chr4_1:51433926-51433945 Msa0554190:intron 55.0%
!!! GTGTTGGTGACCCCTTTTCC+AGG + chr4_1:51433941-51433960 None:intergenic 55.0%
GTCACAGACTTGGCAGGTGT+TGG + chr4_1:51433957-51433976 None:intergenic 55.0%
GAAGGCTACGGTCACAGACT+TGG + chr4_1:51433967-51433986 None:intergenic 55.0%
! GCTGTTGGAGGTGGTGTTGA+AGG + chr4_1:51434635-51434654 None:intergenic 55.0%
CCACATAGAGCTCCAATGGG+GGG - chr4_1:51434692-51434711 Msa0554190:intron 55.0%
AAATCCCTACACCGGCCTCA+GGG + chr4_1:51434982-51435001 None:intergenic 55.0%
TAAATCCCTACACCGGCCTC+AGG + chr4_1:51434983-51435002 None:intergenic 55.0%
GAAAGGCCTCAACCTAGGCC+TGG - chr4_1:51433920-51433939 Msa0554190:intron 60.0%
! GTGACCCCTTTTCCAGGCCT+AGG + chr4_1:51433935-51433954 None:intergenic 60.0%
GCTACGGTCACAGACTTGGC+AGG + chr4_1:51433963-51433982 None:intergenic 60.0%
CCCCCCATTGGAGCTCTATG+TGG + chr4_1:51434695-51434714 None:intergenic 60.0%
CATAGAGCTCCAATGGGGGG+AGG - chr4_1:51434695-51434714 Msa0554190:intron 60.0%
!! CACCTGAGCCTTGTTCCCTG+AGG - chr4_1:51434964-51434983 Msa0554190:intron 60.0%
!! TGAGCCTTGTTCCCTGAGGC+CGG - chr4_1:51434968-51434987 Msa0554190:intron 60.0%
TACACCGGCCTCAGGGAACA+AGG + chr4_1:51434975-51434994 None:intergenic 60.0%
TTGTTCCCTGAGGCCGGTGT+AGG - chr4_1:51434974-51434993 Msa0554190:intron 60.0%
TGTTCCCTGAGGCCGGTGTA+GGG - chr4_1:51434975-51434994 Msa0554190:intron 60.0%
GAAAGGCCTCAACCTAGGCC+TGG - chr4_1:51433920-51433939 Msa0554190:intron 60.0%
! GTGACCCCTTTTCCAGGCCT+AGG + chr4_1:51433935-51433954 None:intergenic 60.0%
GCTACGGTCACAGACTTGGC+AGG + chr4_1:51433963-51433982 None:intergenic 60.0%
CCCCCCATTGGAGCTCTATG+TGG + chr4_1:51434695-51434714 None:intergenic 60.0%
CATAGAGCTCCAATGGGGGG+AGG - chr4_1:51434695-51434714 Msa0554190:intron 60.0%
!! CACCTGAGCCTTGTTCCCTG+AGG - chr4_1:51434964-51434983 Msa0554190:intron 60.0%
!! TGAGCCTTGTTCCCTGAGGC+CGG - chr4_1:51434968-51434987 Msa0554190:intron 60.0%
TACACCGGCCTCAGGGAACA+AGG + chr4_1:51434975-51434994 None:intergenic 60.0%
TTGTTCCCTGAGGCCGGTGT+AGG - chr4_1:51434974-51434993 Msa0554190:intron 60.0%
TGTTCCCTGAGGCCGGTGTA+GGG - chr4_1:51434975-51434994 Msa0554190:intron 60.0%
GGCCTCAGGGAACAAGGCTC+AGG + chr4_1:51434969-51434988 None:intergenic 65.0%
GGCCTCAGGGAACAAGGCTC+AGG + chr4_1:51434969-51434988 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51432902 51435302 51432902 ID=Msa0554190;Name=Msa0554190
chr4_1 mRNA 51432902 51435302 51432902 ID=Msa0554190-mRNA-1;Parent=Msa0554190;Name=Msa0554190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=230|1|1|1|1|1|4|566|216
chr4_1 exon 51432902 51433698 51432902 ID=Msa0554190-mRNA-1:exon:14702;Parent=Msa0554190-mRNA-1
chr4_1 exon 51434183 51434398 51434183 ID=Msa0554190-mRNA-1:exon:14701;Parent=Msa0554190-mRNA-1
chr4_1 exon 51434764 51434964 51434764 ID=Msa0554190-mRNA-1:exon:14700;Parent=Msa0554190-mRNA-1
chr4_1 exon 51435070 51435302 51435070 ID=Msa0554190-mRNA-1:exon:14699;Parent=Msa0554190-mRNA-1
chr4_1 five_prime_UTR 51435073 51435302 51435073 ID=Msa0554190-mRNA-1:five_prime_utr;Parent=Msa0554190-mRNA-1
chr4_1 CDS 51435070 51435072 51435070 ID=Msa0554190-mRNA-1:cds;Parent=Msa0554190-mRNA-1
chr4_1 CDS 51434764 51434964 51434764 ID=Msa0554190-mRNA-1:cds;Parent=Msa0554190-mRNA-1
chr4_1 CDS 51434183 51434398 51434183 ID=Msa0554190-mRNA-1:cds;Parent=Msa0554190-mRNA-1
chr4_1 CDS 51433468 51433698 51433468 ID=Msa0554190-mRNA-1:cds;Parent=Msa0554190-mRNA-1
chr4_1 three_prime_UTR 51432902 51433467 51432902 ID=Msa0554190-mRNA-1:three_prime_utr;Parent=Msa0554190-mRNA-1
Gene Sequence

>Msa0554190

ATGGGAGGTGGAGGAGGTAACAATGAAGAAGAAAACAAGTGGCCACCATGGTTGCAACCACTTCTTCAAACAAGTTTCTTTGTTCAATGCAAAGTCCACTCAGATTCACACAAGAGTGAATGCAATATGTATTGCTTGGATTGTAACAATGGTGCCCTTTGTTCTGTTTGTCTTGCTTCTCACAAACAACATAGAACAATTCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTTTCTGAGATACAGAAATTTCTGGACATAGCAGAGGTTCAAACCTATGTTATAAACAGTGCAAAGATTGTGTTTTTGAATGAAAGGCCTCAACCTAGGCCTGGAAAAGGGGTCACCAACACCTGCCAAGTCTGTGACCGTAGCCTTCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAGAAGTTGAGGAAGAATAAAATGTTGAGTCAGAAAGACGGGTCTGATGGTGAAGAGTCGATGAATGGCATTAGTAATGGAAGTGGCAGAAACAGAAGTCATAGTTTTACACCTTCAACACCACCTCCAACAGCAGTGAGTTACAGAACAGTTAAGAGGAGGAAAGGAATTCCACATAGAGCTCCAATGGGGGGAGGAATCATTATAGAATTCTAA
Protein sequence

>Msa0554190

MGGGGGNNEEENKWPPWLQPLLQTSFFVQCKVHSDSHKSECNMYCLDCNNGALCSVCLASHKQHRTIQIRRSSYHDVIRVSEIQKFLDIAEVQTYVINSAKIVFLNERPQPRPGKGVTNTCQVCDRSLLDSFSFCSLGCKIVGTSKKLRKNKMLSQKDGSDGEESMNGISNGSGRNRSHSFTPSTPPPTAVSYRTVKRRKGIPHRAPMGGGIIIEF*