AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554940 MtrunA17_Chr4g0040681 95.842 505 15 2 1 500 1 504 0.0 1001
Msa0554940 MtrunA17_Chr4g0046291 48.057 489 189 11 13 497 11 438 7.84e-142 416
Msa0554940 MtrunA17_Chr2g0283011 43.284 67 37 1 14 79 10 76 4.49e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554940 AT1G28520.4 47.412 483 167 11 13 476 12 426 1.76e-135 400
Msa0554940 AT1G28520.1 47.412 483 167 11 13 476 12 426 1.76e-135 400
Msa0554940 AT1G28520.2 47.412 483 167 11 13 476 12 426 1.76e-135 400
Msa0554940 AT1G28520.5 47.412 483 167 11 13 476 12 426 1.76e-135 400
Msa0554940 AT1G28520.3 45.625 480 164 10 13 476 12 410 7.92e-128 380
Msa0554940 AT2G42400.1 44.622 502 194 16 13 489 8 450 9.75e-119 357

Find 151 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATTACACCACAAATTT+TGG 0.120500 4_1:+52682223 Msa0554940:CDS
GTGTCTCTCCTTCTCTTTCA+TGG 0.160134 4_1:-52680278 None:intergenic
CCAGAGTCAAATGCCCTTCT+AGG 0.198187 4_1:-52682805 None:intergenic
GTGCACTGTGGGACTGTTTC+AGG 0.229105 4_1:+52682314 Msa0554940:CDS
CGGATATTTGGAAGAATATT+AGG 0.243736 4_1:-52682259 None:intergenic
AATTGAAAGACATACATTTA+AGG 0.245998 4_1:-52680443 None:intergenic
CAGTCCCACAGTGCACATTT+TGG 0.247458 4_1:-52682307 None:intergenic
GAAGGTGGAGGGCGGATATT+TGG 0.256860 4_1:-52682271 None:intergenic
CGTCGACTTGTAGATATTTC+AGG 0.259494 4_1:+52683294 Msa0554940:three_prime_UTR
ATGCCACCAGGTCGCAAAAT+TGG 0.260053 4_1:-52682421 None:intergenic
GCCATGCCTGAGCTATTTAA+AGG 0.279844 4_1:-52682022 None:intergenic
TTTGACGCAACTACTTCTTC+TGG 0.288517 4_1:-52679843 None:intergenic
GAAGTATTTATTTAATATTC+AGG 0.302355 4_1:-52683243 None:intergenic
ATTCGGTTTGAATCAAGATA+TGG 0.326854 4_1:+52682063 Msa0554940:CDS
GCAACTACTTCTTCTGGAAT+TGG 0.351512 4_1:-52679837 None:intergenic
GGGAGCCTTGGTTCGTTCCC+CGG 0.354545 4_1:+52680526 Msa0554940:CDS
GGAGCCTTGGTTCGTTCCCC+GGG 0.354545 4_1:+52680527 Msa0554940:CDS
TTCTTGAGCGTGAAACTGTT+AGG 0.354570 4_1:+52682761 Msa0554940:CDS
TAGTAGTAATCACGAGCTTT+TGG 0.358062 4_1:+52682372 Msa0554940:CDS
TGTTCTTTGACAAGCCTAGA+AGG 0.358781 4_1:+52682791 Msa0554940:CDS
CAACCACGCCCACAATAATC+AGG 0.369577 4_1:-52682850 None:intergenic
AAAGCCCCTTGGAATGCTTC+AGG 0.372413 4_1:+52682538 Msa0554940:CDS
CTTTCTTGCAGACTGAAGAT+TGG 0.379338 4_1:-52680329 None:intergenic
CGGTTGGAGGAAGGTTGTTC+CGG 0.396856 4_1:-52679923 None:intergenic
GAGGCCAAGTCTCAGAATAT+TGG 0.400679 4_1:+52683216 Msa0554940:CDS
CAGCTCTGATTTAATTTGTC+GGG 0.416431 4_1:+52682105 Msa0554940:CDS
GCTAAATTTAATCTTGAAGA+AGG 0.418248 4_1:+52682172 Msa0554940:CDS
TTTCTGGTAAGCAACCTTCA+TGG 0.419867 4_1:-52682990 None:intergenic
CAATCTTCAGTCTGCAAGAA+AGG 0.425162 4_1:+52680330 Msa0554940:CDS
ATTCTATAGGATGGGAGCCT+TGG 0.430671 4_1:+52680514 Msa0554940:intron
GACTGTTTCAGGCCTGCTCA+AGG 0.443030 4_1:+52682325 Msa0554940:CDS
GCTGCTCCGTCGCCAGATGA+TGG 0.448458 4_1:+52683171 Msa0554940:CDS
CAAGTCGACGACCAGTCATT+TGG 0.451245 4_1:-52683281 None:intergenic
ATCAGTCCTCTGACTAAACC+TGG 0.453669 4_1:+52680595 Msa0554940:CDS
CCTAGAAGGGCATTTGACTC+TGG 0.453832 4_1:+52682805 Msa0554940:CDS
CATACTCTTGCATGCTGAGT+TGG 0.455978 4_1:+52683391 Msa0554940:three_prime_UTR
TAGCTCAGGCATGGCTCAGT+TGG 0.463141 4_1:+52682030 Msa0554940:CDS
GAAGCAGCACCTTCACACTT+AGG 0.463567 4_1:-52682511 None:intergenic
TGCTGATTTACAAAACAAGA+TGG 0.465472 4_1:+52683134 Msa0554940:CDS
AAGCAGCACCTTCACACTTA+GGG 0.467565 4_1:-52682510 None:intergenic
GCTAGGAAAGCAGAAGGTGG+AGG 0.468704 4_1:-52682283 None:intergenic
TGCCACTCAACATAATCAAC+AGG 0.470016 4_1:-52682943 None:intergenic
TCAACTGTTACAAGGATTTG+AGG 0.470109 4_1:+52680558 Msa0554940:CDS
AGCAGTCCTTTAAATAGCTC+AGG 0.483033 4_1:+52682016 Msa0554940:CDS
TCTTGAGCGTGAAACTGTTA+GGG 0.483389 4_1:+52682762 Msa0554940:CDS
CAGGCCAATATTCTGAGACT+TGG 0.484185 4_1:-52683220 None:intergenic
CTGATTATTGTGGGCGTGGT+TGG 0.485513 4_1:+52682851 Msa0554940:CDS
CTTGTAGATATTTCAGGATG+GGG 0.493360 4_1:+52683300 Msa0554940:three_prime_UTR
TCCTAAAGGAAAAGTGACTA+AGG 0.496242 4_1:+52683104 Msa0554940:CDS
AGAATATACCTTGAGGCGGT+TGG 0.496846 4_1:-52679939 None:intergenic
CACATGGTGAATAAGATTCA+AGG 0.499116 4_1:+52680298 Msa0554940:CDS
AACAGTTGAGCTAGTTCCCC+GGG 0.501649 4_1:-52680544 None:intergenic
CTGCTTCAACGAAAGCCCCT+TGG 0.502920 4_1:+52682527 Msa0554940:CDS
ACTTGTAGATATTTCAGGAT+GGG 0.503384 4_1:+52683299 Msa0554940:three_prime_UTR
ACAAATCGCCGCCGAGGGTA+GGG 0.503631 4_1:+52679889 Msa0554940:five_prime_UTR
CACTGCTCTAACCCTTGAGC+AGG 0.504462 4_1:-52682337 None:intergenic
TATTTATTTAATATTCAGGC+AGG 0.504657 4_1:-52683239 None:intergenic
CATACATTTAAGGAGGTAGC+TGG 0.508452 4_1:-52680433 None:intergenic
TCAGGATGGGGTTCAGATTG+TGG 0.509656 4_1:+52683312 Msa0554940:three_prime_UTR
GATTACTACTACAGTAATCC+TGG 0.514174 4_1:-52682360 None:intergenic
ATCAAGGAAGCAGGTGATGA+AGG 0.514451 4_1:+52682879 Msa0554940:CDS
ATTTGTCGGGACCACAGCCT+CGG 0.516229 4_1:+52682118 Msa0554940:CDS
TGCTGTTCTTGCAAAGACAC+TGG 0.517048 4_1:+52682471 Msa0554940:CDS
AAAGTTGTCTCCAAAATTTG+TGG 0.522041 4_1:-52682233 None:intergenic
ACAGCTCTGATTTAATTTGT+CGG 0.522169 4_1:+52682104 Msa0554940:CDS
TTGTTGATAAGCAACGATCA+TGG 0.529822 4_1:-52683020 None:intergenic
TTTGTCGGGACCACAGCCTC+GGG 0.529845 4_1:+52682119 Msa0554940:CDS
ATCCCTGATTATTGTGGGCG+TGG 0.530254 4_1:+52682847 Msa0554940:CDS
GGGCATTTGACTCTGGAACT+AGG 0.533243 4_1:+52682812 Msa0554940:CDS
AAGCAGGTGATGAAGGAACA+TGG 0.536829 4_1:+52682886 Msa0554940:CDS
AGATCCATCCCTGATTATTG+TGG 0.539369 4_1:+52682841 Msa0554940:CDS
GATCCATCCCTGATTATTGT+GGG 0.542160 4_1:+52682842 Msa0554940:CDS
ATATACCTTGAGGCGGTTGG+AGG 0.544794 4_1:-52679936 None:intergenic
ACTGTTTCAGGCCTGCTCAA+GGG 0.545418 4_1:+52682326 Msa0554940:CDS
TCAGAAATCCATGAAAGAGA+AGG 0.547366 4_1:+52680270 Msa0554940:CDS
CTGCGTTGTACCCGAGGCTG+TGG 0.548854 4_1:-52682129 None:intergenic
TACTAACCTGAAGCATTCCA+AGG 0.549098 4_1:-52682544 None:intergenic
TCAACATAATCAACAGGCTG+TGG 0.549517 4_1:-52682937 None:intergenic
GCTGATTTACAAAACAAGAT+GGG 0.550937 4_1:+52683135 Msa0554940:CDS
TATGAAATCAATAACCATGA+AGG 0.551452 4_1:+52682976 Msa0554940:CDS
CGAAAGTATGACCTAGTGAC+TGG 0.552272 4_1:-52681970 None:intergenic
TTACTTCTGCGTTGTACCCG+AGG 0.555658 4_1:-52682135 None:intergenic
AGCCCCAAAATGTGCACTGT+GGG 0.556411 4_1:+52682303 Msa0554940:CDS
AGGTTTAGTCAGAGGACTGA+TGG 0.559286 4_1:-52680593 None:intergenic
CTAGGAAAGCAGAAGGTGGA+GGG 0.562417 4_1:-52682282 None:intergenic
CTTCAACAAATCGCCGCCGA+GGG 0.562779 4_1:+52679884 Msa0554940:five_prime_UTR
AACAAATCGCCGCCGAGGGT+AGG 0.562847 4_1:+52679888 Msa0554940:five_prime_UTR
TCAGTTGCTTCGAGAGTGGA+AGG 0.563881 4_1:+52680396 Msa0554940:CDS
GTTCTTTGACAAGCCTAGAA+GGG 0.566867 4_1:+52682792 Msa0554940:CDS
ACCTTGAGGCGGTTGGAGGA+AGG 0.566975 4_1:-52679932 None:intergenic
AAAGACACTGGGAAAAGAAG+TGG 0.569750 4_1:+52682483 Msa0554940:CDS
GAACTAGCTCAACTGTTACA+AGG 0.571434 4_1:+52680550 Msa0554940:CDS
TAATCAGTGTTAAACAGCCC+AGG 0.573081 4_1:-52680613 None:intergenic
TTGGCATGAATCAAGGAAGC+AGG 0.575003 4_1:+52682870 Msa0554940:CDS
TAACAGTTGAGCTAGTTCCC+CGG 0.575974 4_1:-52680545 None:intergenic
TCCTTTAAATAGCTCAGGCA+TGG 0.578059 4_1:+52682021 Msa0554940:CDS
TGCATCAGTTGCTTCGAGAG+TGG 0.578160 4_1:+52680392 Msa0554940:CDS
TACTGATATTCTCATCATTG+AGG 0.580303 4_1:+52680363 Msa0554940:CDS
GGCGTGGTTGGCATGAATCA+AGG 0.581508 4_1:+52682863 Msa0554940:CDS
TTGGAGGAAGGTTGTTCCGG+TGG 0.584750 4_1:-52679920 None:intergenic
AGCAGGTGATGAAGGAACAT+GGG 0.587152 4_1:+52682887 Msa0554940:CDS
AGATGATGGAAAATCTGTCA+AGG 0.589213 4_1:+52683185 Msa0554940:CDS
TCAAGGGTTAGAGCAGTGCC+AGG 0.589320 4_1:+52682342 Msa0554940:CDS
GACTTGTAGATATTTCAGGA+TGG 0.589529 4_1:+52683298 Msa0554940:three_prime_UTR
GCTGTTCTTGCAAAGACACT+GGG 0.597625 4_1:+52682472 Msa0554940:CDS
GGGTAGGGTTCTCATTCCAC+CGG 0.600797 4_1:+52679904 Msa0554940:five_prime_UTR
GATATGGATCACAACGCTGT+AGG 0.601822 4_1:+52682079 Msa0554940:CDS
TGACTGATTATTGTGGTGGT+AGG 0.602008 4_1:+52683364 Msa0554940:three_prime_UTR
AACAGCCCAGGTTTAGTCAG+AGG 0.603193 4_1:-52680601 None:intergenic
ACAAAAGAGATCATATTACA+TGG 0.603201 4_1:+52682912 Msa0554940:CDS
ACCTTCCTCCAACCGCCTCA+AGG 0.610581 4_1:+52679931 Msa0554940:five_prime_UTR
GTATGATGAAAGAAAACTCA+GGG 0.611743 4_1:+52680224 Msa0554940:exon
TGAAAGACATACATTTAAGG+AGG 0.614720 4_1:-52680440 None:intergenic
AATATTCTGAGACTTGGCCT+CGG 0.616309 4_1:-52683214 None:intergenic
GGTATGATGAAAGAAAACTC+AGG 0.617008 4_1:+52680223 Msa0554940:exon
ACATGGTGAATAAGATTCAA+GGG 0.617617 4_1:+52680299 Msa0554940:CDS
TCACTAGGTCATACTTTCGA+AGG 0.619681 4_1:+52681974 Msa0554940:CDS
AAGACACTGGGAAAAGAAGT+GGG 0.621213 4_1:+52682484 Msa0554940:CDS
ACGCCCACAATAATCAGGGA+TGG 0.621905 4_1:-52682845 None:intergenic
AGCGTGAAACTGTTAGGGAG+TGG 0.622146 4_1:+52682767 Msa0554940:CDS
GGGGCTAGGAAAGCAGAAGG+TGG 0.622810 4_1:-52682286 None:intergenic
ACTAACCTGAAGCATTCCAA+GGG 0.625065 4_1:-52682543 None:intergenic
TTTGATAATAACCAGTCACT+AGG 0.626203 4_1:+52681959 Msa0554940:CDS
TTTGGGGCTAGGAAAGCAGA+AGG 0.630230 4_1:-52682289 None:intergenic
GTGGGCATCCCTAAGTGTGA+AGG 0.630659 4_1:+52682502 Msa0554940:CDS
TGGAATGAGAACCCTACCCT+CGG 0.631803 4_1:-52679900 None:intergenic
GATGATGGAAAATCTGTCAA+GGG 0.632198 4_1:+52683186 Msa0554940:CDS
GCAAGAACAGCAGCAAACAA+AGG 0.637682 4_1:-52682460 None:intergenic
GTCTGTATAATGCACAACCA+TGG 0.640803 4_1:-52683050 None:intergenic
AACCACGCCCACAATAATCA+GGG 0.641167 4_1:-52682849 None:intergenic
GTTCCCCGGGGAACGAACCA+AGG 0.641862 4_1:-52680531 None:intergenic
GCAGGTGATGAAGGAACATG+GGG 0.643689 4_1:+52682888 Msa0554940:CDS
ACTTCAACAAATCGCCGCCG+AGG 0.645399 4_1:+52679883 Msa0554940:five_prime_UTR
AGCCTGTTGATTATGTTGAG+TGG 0.648782 4_1:+52682941 Msa0554940:CDS
TCAGTCCTCTGACTAAACCT+GGG 0.653984 4_1:+52680596 Msa0554940:CDS
TCTTTCACATCAATGCCACC+AGG 0.663784 4_1:-52682433 None:intergenic
GGAAAGCAGAAGGTGGAGGG+CGG 0.666552 4_1:-52682279 None:intergenic
GTAATGACTGATTATTGTGG+TGG 0.676509 4_1:+52683360 Msa0554940:three_prime_UTR
CAACATAATCAACAGGCTGT+GGG 0.679528 4_1:-52682936 None:intergenic
GAGCCTTGGTTCGTTCCCCG+GGG 0.682409 4_1:+52680528 Msa0554940:CDS
AGTAAGAATATACCTTGAGG+CGG 0.683868 4_1:-52679943 None:intergenic
ATGATGAAAGAAAACTCAGG+GGG 0.696312 4_1:+52680226 Msa0554940:CDS
GAAAGAGAAGGAGAGACACA+TGG 0.697093 4_1:+52680282 Msa0554940:CDS
TAGCCCCAAAATGTGCACTG+TGG 0.701568 4_1:+52682302 Msa0554940:CDS
GGTGGCATTGATGTGAAAGA+CGG 0.715531 4_1:+52682436 Msa0554940:CDS
AATGAGAACCCTACCCTCGG+CGG 0.726593 4_1:-52679897 None:intergenic
CTAACCTGAAGCATTCCAAG+GGG 0.741948 4_1:-52682542 None:intergenic
AAGGTAATGACTGATTATTG+TGG 0.742590 4_1:+52683357 Msa0554940:three_prime_UTR
TATGATGAAAGAAAACTCAG+GGG 0.752762 4_1:+52680225 Msa0554940:exon
ACAGTTGAGCTAGTTCCCCG+GGG 0.783595 4_1:-52680543 None:intergenic
CAGGTGATGAAGGAACATGG+GGG 0.853574 4_1:+52682889 Msa0554940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - chr4_1:52680857-52680876 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr4_1:52680858-52680877 None:intergenic 0.0%
!!! TTGATTTTTTTTTTTTTTGA+AGG + chr4_1:52680198-52680217 Msa0554940:intron 10.0%
!! ATATACATATACATAAAAAT+TGG - chr4_1:52680488-52680507 None:intergenic 10.0%
!! AATTACAAAAAAAAAAAAGA+GGG - chr4_1:52681810-52681829 None:intergenic 10.0%
!! AAATTACAAAAAAAAAAAAG+AGG - chr4_1:52681811-52681830 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGAAGGA+AGG + chr4_1:52680202-52680221 Msa0554940:intron 15.0%
!! ATATACATAAAAATTGGATT+TGG - chr4_1:52680482-52680501 None:intergenic 15.0%
!!! TTTTATGTATATGTATATGT+TGG + chr4_1:52680490-52680509 Msa0554940:intron 15.0%
!! ATTAGAAAAGAAAACAATTA+GGG - chr4_1:52680991-52681010 None:intergenic 15.0%
!!! TAGATTAGTTTATTAAACTA+TGG - chr4_1:52681149-52681168 None:intergenic 15.0%
!!! ATGTTAAATATTTCCATTTT+AGG - chr4_1:52681522-52681541 None:intergenic 15.0%
!!! GAAGTATTTATTTAATATTC+AGG - chr4_1:52683246-52683265 None:intergenic 15.0%
!! AATTGAAAGACATACATTTA+AGG - chr4_1:52680446-52680465 None:intergenic 20.0%
!!! TATCAGTAATGTTATTTTGA+TGG - chr4_1:52680639-52680658 None:intergenic 20.0%
!! ATATATATATAGGGGTTATA+CGG - chr4_1:52680848-52680867 None:intergenic 20.0%
!! CATTAGAAAAGAAAACAATT+AGG - chr4_1:52680992-52681011 None:intergenic 20.0%
!! CATAATTTAGAAAAGGAAAT+CGG - chr4_1:52681061-52681080 None:intergenic 20.0%
!! TTTGTGACATAATTTAGAAA+AGG - chr4_1:52681068-52681087 None:intergenic 20.0%
!!! TTTTTTAACCTTCTTGTTTA+CGG + chr4_1:52681229-52681248 Msa0554940:intron 20.0%
!! AAATATTTAACATAGAACCT+AGG + chr4_1:52681529-52681548 Msa0554940:intron 20.0%
!! AATATTTAACATAGAACCTA+GGG + chr4_1:52681530-52681549 Msa0554940:intron 20.0%
!! ACAGTTATATATATAAGCTA+TGG - chr4_1:52681556-52681575 None:intergenic 20.0%
!!! ATTCAGTATTTTCAGAAATA+TGG + chr4_1:52681646-52681665 Msa0554940:intron 20.0%
!! TTATCAACAAAAATTAACCA+TGG + chr4_1:52683033-52683052 Msa0554940:CDS 20.0%
!! GATAAAAAAAAAAGTCCTAA+AGG + chr4_1:52683090-52683109 Msa0554940:CDS 20.0%
!! TATTTATTTAATATTCAGGC+AGG - chr4_1:52683242-52683261 None:intergenic 20.0%
!!! TGGAAATTTTTTACATTTCT+TGG + chr4_1:52683332-52683351 Msa0554940:three_prime_UTR 20.0%
!!! AAATTGCTTTTTGTATGTTT+GGG + chr4_1:52683465-52683484 Msa0554940:three_prime_UTR 20.0%
! TTGAATTTATAGTGATCGAT+CGG - chr4_1:52679975-52679994 None:intergenic 25.0%
!!! TAGCAATTATGAGTTTTATC+AGG + chr4_1:52680657-52680676 Msa0554940:CDS 25.0%
! GAGAATCTTCTATATATCTT+TGG + chr4_1:52680705-52680724 Msa0554940:intron 25.0%
! AAAAGAAAACAATTAGGGTA+AGG - chr4_1:52680986-52681005 None:intergenic 25.0%
! TTCTAAATTATGTCACAAAC+TGG + chr4_1:52681069-52681088 Msa0554940:intron 25.0%
!!! TTTTTAACCTTCTTGTTTAC+GGG + chr4_1:52681230-52681249 Msa0554940:intron 25.0%
! ACAAATGAATTTCAACAAGT+TGG - chr4_1:52681371-52681390 None:intergenic 25.0%
!! TTGTTGAAATTCATTTGTTG+AGG + chr4_1:52681373-52681392 Msa0554940:intron 25.0%
!! TTTCTTTAAGAGATAACAAC+TGG + chr4_1:52681913-52681932 Msa0554940:intron 25.0%
! GCTAAATTTAATCTTGAAGA+AGG + chr4_1:52682172-52682191 Msa0554940:CDS 25.0%
!! GATAATTACACCACAAATTT+TGG + chr4_1:52682223-52682242 Msa0554940:CDS 25.0%
! ACAAAAGAGATCATATTACA+TGG + chr4_1:52682912-52682931 Msa0554940:CDS 25.0%
! TATGAAATCAATAACCATGA+AGG + chr4_1:52682976-52682995 Msa0554940:CDS 25.0%
!!! TTTTTTACATTTCTTGGACA+AGG + chr4_1:52683338-52683357 Msa0554940:three_prime_UTR 25.0%
!!! CAAATTGCTTTTTGTATGTT+TGG + chr4_1:52683464-52683483 Msa0554940:three_prime_UTR 25.0%
!!! AATTGCTTTTTGTATGTTTG+GGG + chr4_1:52683466-52683485 Msa0554940:three_prime_UTR 25.0%
CAAAGTAAGAATATACCTTG+AGG - chr4_1:52679949-52679968 None:intergenic 30.0%
CATAACAAACTCATAGAAAG+TGG - chr4_1:52680164-52680183 None:intergenic 30.0%
GTATGATGAAAGAAAACTCA+GGG + chr4_1:52680224-52680243 Msa0554940:exon 30.0%
TATGATGAAAGAAAACTCAG+GGG + chr4_1:52680225-52680244 Msa0554940:exon 30.0%
ACATGGTGAATAAGATTCAA+GGG + chr4_1:52680299-52680318 Msa0554940:CDS 30.0%
TACTGATATTCTCATCATTG+AGG + chr4_1:52680363-52680382 Msa0554940:CDS 30.0%
TGAAAGACATACATTTAAGG+AGG - chr4_1:52680443-52680462 None:intergenic 30.0%
TGTATATGTTGGCATTCTAT+AGG + chr4_1:52680501-52680520 Msa0554940:intron 30.0%
!! CAATTATGAGTTTTATCAGG+AGG + chr4_1:52680660-52680679 Msa0554940:CDS 30.0%
TCACAATGTTAGTATTATGC+TGG + chr4_1:52680751-52680770 Msa0554940:intron 30.0%
CACAATGTTAGTATTATGCT+GGG + chr4_1:52680752-52680771 Msa0554940:intron 30.0%
CTAATCTAATTCCTATCATG+TGG + chr4_1:52681161-52681180 Msa0554940:intron 30.0%
TAAAAAATGTGTCAGCCAAT+AGG - chr4_1:52681216-52681235 None:intergenic 30.0%
!! TTTTAACCTTCTTGTTTACG+GGG + chr4_1:52681231-52681250 Msa0554940:intron 30.0%
TGAACTGAAAAATCAGAACA+AGG - chr4_1:52681340-52681359 None:intergenic 30.0%
!! GTTTTCTAAGAGTTCTCTTT+TGG - chr4_1:52681407-52681426 None:intergenic 30.0%
!! CTTAGAAAACATTTCTAGTC+AGG + chr4_1:52681417-52681436 Msa0554940:intron 30.0%
AAGTGGTTAATTAAGTGAAG+TGG - chr4_1:52681484-52681503 None:intergenic 30.0%
!! GATTATTAGCCTTTCATTTG+TGG + chr4_1:52681740-52681759 Msa0554940:intron 30.0%
TTAATCACACCACAAATGAA+AGG - chr4_1:52681752-52681771 None:intergenic 30.0%
GTTATCTCTTAAAGAAAAGC+AGG - chr4_1:52681910-52681929 None:intergenic 30.0%
! TTTGATAATAACCAGTCACT+AGG + chr4_1:52681959-52681978 Msa0554940:CDS 30.0%
! CAGTTGGATTTTCATTCATT+CGG + chr4_1:52682046-52682065 Msa0554940:CDS 30.0%
! ATTCGGTTTGAATCAAGATA+TGG + chr4_1:52682063-52682082 Msa0554940:CDS 30.0%
!! ACAGCTCTGATTTAATTTGT+CGG + chr4_1:52682104-52682123 Msa0554940:CDS 30.0%
! GATGAGTATGATCAACTTTT+CGG + chr4_1:52682199-52682218 Msa0554940:CDS 30.0%
AAAGTTGTCTCCAAAATTTG+TGG - chr4_1:52682236-52682255 None:intergenic 30.0%
CGGATATTTGGAAGAATATT+AGG - chr4_1:52682262-52682281 None:intergenic 30.0%
ATCTTGCAAATTCTACAACT+AGG + chr4_1:52682613-52682632 Msa0554940:intron 30.0%
! ACTTGTTTCTTTCGTCTATT+TGG + chr4_1:52682677-52682696 Msa0554940:intron 30.0%
TTTCTTTCGTCTATTTGGTT+GGG + chr4_1:52682682-52682701 Msa0554940:intron 30.0%
!!! CGATCATGGTTATTTTTTTC+TGG - chr4_1:52683009-52683028 None:intergenic 30.0%
!! TGCTGATTTACAAAACAAGA+TGG + chr4_1:52683134-52683153 Msa0554940:CDS 30.0%
! GCTGATTTACAAAACAAGAT+GGG + chr4_1:52683135-52683154 Msa0554940:CDS 30.0%
ACTTGTAGATATTTCAGGAT+GGG + chr4_1:52683299-52683318 Msa0554940:three_prime_UTR 30.0%
AAGGTAATGACTGATTATTG+TGG + chr4_1:52683357-52683376 Msa0554940:three_prime_UTR 30.0%
AGTAAGAATATACCTTGAGG+CGG - chr4_1:52679946-52679965 None:intergenic 35.0%
AACCCTAGAATTTCTCAACT+AGG + chr4_1:52680008-52680027 Msa0554940:intron 35.0%
GACCTAGTTGAGAAATTCTA+GGG - chr4_1:52680013-52680032 None:intergenic 35.0%
AGACCTAGTTGAGAAATTCT+AGG - chr4_1:52680014-52680033 None:intergenic 35.0%
! AATGCCTATTTTGTGTGTCT+TGG + chr4_1:52680071-52680090 Msa0554940:intron 35.0%
GGTATGATGAAAGAAAACTC+AGG + chr4_1:52680223-52680242 Msa0554940:exon 35.0%
ATGATGAAAGAAAACTCAGG+GGG + chr4_1:52680226-52680245 Msa0554940:CDS 35.0%
TCAGAAATCCATGAAAGAGA+AGG + chr4_1:52680270-52680289 Msa0554940:CDS 35.0%
CACATGGTGAATAAGATTCA+AGG + chr4_1:52680298-52680317 Msa0554940:CDS 35.0%
TATGTTGGCATTCTATAGGA+TGG + chr4_1:52680505-52680524 Msa0554940:intron 35.0%
ATGTTGGCATTCTATAGGAT+GGG + chr4_1:52680506-52680525 Msa0554940:intron 35.0%
TCAACTGTTACAAGGATTTG+AGG + chr4_1:52680558-52680577 Msa0554940:CDS 35.0%
TGAGTTTCTTTCACTTGTTC+TGG + chr4_1:52680683-52680702 Msa0554940:intron 35.0%
TGTTAGTATTATGCTGGGAT+TGG + chr4_1:52680757-52680776 Msa0554940:intron 35.0%
ATATATAGGGGTTATACGGA+TGG - chr4_1:52680844-52680863 None:intergenic 35.0%
CGGAATAGTAGAACAATGTA+AGG - chr4_1:52681041-52681060 None:intergenic 35.0%
! AGTGATACACTTTGGGAATT+GGG - chr4_1:52681273-52681292 None:intergenic 35.0%
CACTTAATTAACCACTTGAG+TGG + chr4_1:52681487-52681506 Msa0554940:intron 35.0%
! GTGGTTAGTTGTTCCTAAAA+TGG + chr4_1:52681506-52681525 Msa0554940:intron 35.0%
TATATATAAGCTATGGCCCT+AGG - chr4_1:52681549-52681568 None:intergenic 35.0%
CTAATAATCGTACTAGCTGA+TGG - chr4_1:52681729-52681748 None:intergenic 35.0%
TCAAAACATTTCTGCACGAA+TGG - chr4_1:52681944-52681963 None:intergenic 35.0%
!! CAGCTCTGATTTAATTTGTC+GGG + chr4_1:52682105-52682124 Msa0554940:CDS 35.0%
GATTACTACTACAGTAATCC+TGG - chr4_1:52682363-52682382 None:intergenic 35.0%
! TAGTAGTAATCACGAGCTTT+TGG + chr4_1:52682372-52682391 Msa0554940:CDS 35.0%
GTTTCTTTCGTCTATTTGGT+TGG + chr4_1:52682681-52682700 Msa0554940:intron 35.0%
! TTGTTGATAAGCAACGATCA+TGG - chr4_1:52683023-52683042 None:intergenic 35.0%
TCCTAAAGGAAAAGTGACTA+AGG + chr4_1:52683104-52683123 Msa0554940:CDS 35.0%
!!! TCCTTAGTCACTTTTCCTTT+AGG - chr4_1:52683108-52683127 None:intergenic 35.0%
! TTGACAGATTTTCCATCATC+TGG - chr4_1:52683186-52683205 None:intergenic 35.0%
!! AGATGATGGAAAATCTGTCA+AGG + chr4_1:52683185-52683204 Msa0554940:CDS 35.0%
!! GATGATGGAAAATCTGTCAA+GGG + chr4_1:52683186-52683205 Msa0554940:CDS 35.0%
! GATGATTTTTGCCAAATGAC+TGG + chr4_1:52683270-52683289 Msa0554940:three_prime_UTR 35.0%
GACTTGTAGATATTTCAGGA+TGG + chr4_1:52683298-52683317 Msa0554940:three_prime_UTR 35.0%
CTTGTAGATATTTCAGGATG+GGG + chr4_1:52683300-52683319 Msa0554940:three_prime_UTR 35.0%
GTAATGACTGATTATTGTGG+TGG + chr4_1:52683360-52683379 Msa0554940:three_prime_UTR 35.0%
!! GCAACTACTTCTTCTGGAAT+TGG - chr4_1:52679840-52679859 None:intergenic 40.0%
TTTGACGCAACTACTTCTTC+TGG - chr4_1:52679846-52679865 None:intergenic 40.0%
GGAACCAAGACACACAAAAT+AGG - chr4_1:52680078-52680097 None:intergenic 40.0%
! ATTTTGTGTGTCTTGGTTCC+CGG + chr4_1:52680078-52680097 Msa0554940:intron 40.0%
GAAACTTCGTACCTGTATCA+TGG + chr4_1:52680119-52680138 Msa0554940:intron 40.0%
CTCATGAGTTACCATGATAC+AGG - chr4_1:52680133-52680152 None:intergenic 40.0%
GAAAACTCAGGGGGAAAATA+TGG + chr4_1:52680235-52680254 Msa0554940:CDS 40.0%
CTTTCTTGCAGACTGAAGAT+TGG - chr4_1:52680332-52680351 None:intergenic 40.0%
CAATCTTCAGTCTGCAAGAA+AGG + chr4_1:52680330-52680349 Msa0554940:CDS 40.0%
CATACATTTAAGGAGGTAGC+TGG - chr4_1:52680436-52680455 None:intergenic 40.0%
GAACTAGCTCAACTGTTACA+AGG + chr4_1:52680550-52680569 Msa0554940:CDS 40.0%
TAATCAGTGTTAAACAGCCC+AGG - chr4_1:52680616-52680635 None:intergenic 40.0%
TAAGGAGTGGAGTGATAAGA+AGG - chr4_1:52680798-52680817 None:intergenic 40.0%
!! GCGTGACATGTTAATTTGTC+TGG + chr4_1:52680941-52680960 Msa0554940:intron 40.0%
! TTATGTCACAAACTGGTCTC+CGG + chr4_1:52681076-52681095 Msa0554940:intron 40.0%
ATTAGACACGATCGTACAAC+CGG - chr4_1:52681098-52681117 None:intergenic 40.0%
AATTCCTATCATGTGGTGTG+CGG + chr4_1:52681168-52681187 Msa0554940:intron 40.0%
!!! TGCGGTCTTTTAGTTCATTC+AGG + chr4_1:52681186-52681205 Msa0554940:intron 40.0%
GTTCATTCAGGCAAACCTAT+TGG + chr4_1:52681198-52681217 Msa0554940:intron 40.0%
GTAATTCCCCGTAAACAAGA+AGG - chr4_1:52681240-52681259 None:intergenic 40.0%
! ATACACTTTGGGAATTGGGT+GGG - chr4_1:52681269-52681288 None:intergenic 40.0%
! GAGTGATACACTTTGGGAAT+TGG - chr4_1:52681274-52681293 None:intergenic 40.0%
CCTAAAGAGATCAGATGACT+TGG - chr4_1:52681306-52681325 None:intergenic 40.0%
CCAAGTCATCTGATCTCTTT+AGG + chr4_1:52681303-52681322 Msa0554940:intron 40.0%
!! AGTCAGGACTAGTTAACCAT+TGG + chr4_1:52681433-52681452 Msa0554940:intron 40.0%
TAATCGTACTAGCTGATGGA+TGG - chr4_1:52681725-52681744 None:intergenic 40.0%
TCACTAGGTCATACTTTCGA+AGG + chr4_1:52681974-52681993 Msa0554940:CDS 40.0%
AGCAGTCCTTTAAATAGCTC+AGG + chr4_1:52682016-52682035 Msa0554940:CDS 40.0%
TCCTTTAAATAGCTCAGGCA+TGG + chr4_1:52682021-52682040 Msa0554940:CDS 40.0%
TTTGGCAAAAAGTGAGGATG+AGG + chr4_1:52682390-52682409 Msa0554940:CDS 40.0%
TTGGCAAAAAGTGAGGATGA+GGG + chr4_1:52682391-52682410 Msa0554940:CDS 40.0%
AAAGACACTGGGAAAAGAAG+TGG + chr4_1:52682483-52682502 Msa0554940:CDS 40.0%
AAGACACTGGGAAAAGAAGT+GGG + chr4_1:52682484-52682503 Msa0554940:CDS 40.0%
! ACTAACCTGAAGCATTCCAA+GGG - chr4_1:52682546-52682565 None:intergenic 40.0%
! TACTAACCTGAAGCATTCCA+AGG - chr4_1:52682547-52682566 None:intergenic 40.0%
TTCTTGAGCGTGAAACTGTT+AGG + chr4_1:52682761-52682780 Msa0554940:CDS 40.0%
TCTTGAGCGTGAAACTGTTA+GGG + chr4_1:52682762-52682781 Msa0554940:CDS 40.0%
TGTTCTTTGACAAGCCTAGA+AGG + chr4_1:52682791-52682810 Msa0554940:CDS 40.0%
GTTCTTTGACAAGCCTAGAA+GGG + chr4_1:52682792-52682811 Msa0554940:CDS 40.0%
AGATCCATCCCTGATTATTG+TGG + chr4_1:52682841-52682860 Msa0554940:CDS 40.0%
GATCCATCCCTGATTATTGT+GGG + chr4_1:52682842-52682861 Msa0554940:CDS 40.0%
CAACATAATCAACAGGCTGT+GGG - chr4_1:52682939-52682958 None:intergenic 40.0%
TCAACATAATCAACAGGCTG+TGG - chr4_1:52682940-52682959 None:intergenic 40.0%
! AGCCTGTTGATTATGTTGAG+TGG + chr4_1:52682941-52682960 Msa0554940:CDS 40.0%
TGCCACTCAACATAATCAAC+AGG - chr4_1:52682946-52682965 None:intergenic 40.0%
! TTTCTGGTAAGCAACCTTCA+TGG - chr4_1:52682993-52683012 None:intergenic 40.0%
GTCTGTATAATGCACAACCA+TGG - chr4_1:52683053-52683072 None:intergenic 40.0%
!! AATATTCTGAGACTTGGCCT+CGG - chr4_1:52683217-52683236 None:intergenic 40.0%
!! CGTCGACTTGTAGATATTTC+AGG + chr4_1:52683294-52683313 Msa0554940:three_prime_UTR 40.0%
TGACTGATTATTGTGGTGGT+AGG + chr4_1:52683364-52683383 Msa0554940:three_prime_UTR 40.0%
AGAATATACCTTGAGGCGGT+TGG - chr4_1:52679942-52679961 None:intergenic 45.0%
TTCCCGGACTCGTTAAATGA+CGG + chr4_1:52680094-52680113 Msa0554940:intron 45.0%
GTGTCTCTCCTTCTCTTTCA+TGG - chr4_1:52680281-52680300 None:intergenic 45.0%
GAAAGAGAAGGAGAGACACA+TGG + chr4_1:52680282-52680301 Msa0554940:CDS 45.0%
ATTCTATAGGATGGGAGCCT+TGG + chr4_1:52680514-52680533 Msa0554940:intron 45.0%
TAACAGTTGAGCTAGTTCCC+CGG - chr4_1:52680548-52680567 None:intergenic 45.0%
AGGTTTAGTCAGAGGACTGA+TGG - chr4_1:52680596-52680615 None:intergenic 45.0%
ATCAGTCCTCTGACTAAACC+TGG + chr4_1:52680595-52680614 Msa0554940:CDS 45.0%
TCAGTCCTCTGACTAAACCT+GGG + chr4_1:52680596-52680615 Msa0554940:CDS 45.0%
GTGGAGTGATAAGAAGGTTG+AGG - chr4_1:52680792-52680811 None:intergenic 45.0%
! TACACTTTGGGAATTGGGTG+GGG - chr4_1:52681268-52681287 None:intergenic 45.0%
! GATACACTTTGGGAATTGGG+TGG - chr4_1:52681270-52681289 None:intergenic 45.0%
GAGCTCGAGTGATACACTTT+GGG - chr4_1:52681280-52681299 None:intergenic 45.0%
AGAGCTCGAGTGATACACTT+TGG - chr4_1:52681281-52681300 None:intergenic 45.0%
AAAGTGTATCACTCGAGCTC+TGG + chr4_1:52681280-52681299 Msa0554940:intron 45.0%
GGAACAACTAACCACTCAAG+TGG - chr4_1:52681501-52681520 None:intergenic 45.0%
! CGAAAGTATGACCTAGTGAC+TGG - chr4_1:52681973-52681992 None:intergenic 45.0%
GCCATGCCTGAGCTATTTAA+AGG - chr4_1:52682025-52682044 None:intergenic 45.0%
GATATGGATCACAACGCTGT+AGG + chr4_1:52682079-52682098 Msa0554940:CDS 45.0%
! AGTCCCACAGTGCACATTTT+GGG - chr4_1:52682309-52682328 None:intergenic 45.0%
! CGAGCTTTTGGCAAAAAGTG+AGG + chr4_1:52682384-52682403 Msa0554940:CDS 45.0%
! AAGACTCCAATTTTGCGACC+TGG + chr4_1:52682415-52682434 Msa0554940:CDS 45.0%
TCTTTCACATCAATGCCACC+AGG - chr4_1:52682436-52682455 None:intergenic 45.0%
!! GGTGGCATTGATGTGAAAGA+CGG + chr4_1:52682436-52682455 Msa0554940:CDS 45.0%
GCAAGAACAGCAGCAAACAA+AGG - chr4_1:52682463-52682482 None:intergenic 45.0%
TGCTGTTCTTGCAAAGACAC+TGG + chr4_1:52682471-52682490 Msa0554940:CDS 45.0%
GCTGTTCTTGCAAAGACACT+GGG + chr4_1:52682472-52682491 Msa0554940:CDS 45.0%
AAGCAGCACCTTCACACTTA+GGG - chr4_1:52682513-52682532 None:intergenic 45.0%
! CTAACCTGAAGCATTCCAAG+GGG - chr4_1:52682545-52682564 None:intergenic 45.0%
AACCACGCCCACAATAATCA+GGG - chr4_1:52682852-52682871 None:intergenic 45.0%
TTGGCATGAATCAAGGAAGC+AGG + chr4_1:52682870-52682889 Msa0554940:CDS 45.0%
ATCAAGGAAGCAGGTGATGA+AGG + chr4_1:52682879-52682898 Msa0554940:CDS 45.0%
AAGCAGGTGATGAAGGAACA+TGG + chr4_1:52682886-52682905 Msa0554940:CDS 45.0%
AGCAGGTGATGAAGGAACAT+GGG + chr4_1:52682887-52682906 Msa0554940:CDS 45.0%
! GATTTTCCATCATCTGGCGA+CGG - chr4_1:52683180-52683199 None:intergenic 45.0%
ATCTGTCAAGGGAAAAACCG+AGG + chr4_1:52683197-52683216 Msa0554940:CDS 45.0%
GAGGCCAAGTCTCAGAATAT+TGG + chr4_1:52683216-52683235 Msa0554940:CDS 45.0%
!! CAGGCCAATATTCTGAGACT+TGG - chr4_1:52683223-52683242 None:intergenic 45.0%
CATACTCTTGCATGCTGAGT+TGG + chr4_1:52683391-52683410 Msa0554940:three_prime_UTR 45.0%
!! ATATATATATATATATATAG+GGG - chr4_1:52680856-52680875 None:intergenic 5.0%
!! ATATATATATATATATATGT+CGG + chr4_1:52680912-52680931 Msa0554940:intron 5.0%
TGGAATGAGAACCCTACCCT+CGG - chr4_1:52679903-52679922 None:intergenic 50.0%
ATATACCTTGAGGCGGTTGG+AGG - chr4_1:52679939-52679958 None:intergenic 50.0%
CACCGTCATTTAACGAGTCC+GGG - chr4_1:52680099-52680118 None:intergenic 50.0%
CCACCGTCATTTAACGAGTC+CGG - chr4_1:52680100-52680119 None:intergenic 50.0%
TGCATCAGTTGCTTCGAGAG+TGG + chr4_1:52680392-52680411 Msa0554940:CDS 50.0%
TCAGTTGCTTCGAGAGTGGA+AGG + chr4_1:52680396-52680415 Msa0554940:CDS 50.0%
AACAGTTGAGCTAGTTCCCC+GGG - chr4_1:52680547-52680566 None:intergenic 50.0%
AACAGCCCAGGTTTAGTCAG+AGG - chr4_1:52680604-52680623 None:intergenic 50.0%
TAGGGGTTATACGGATGGCT+TGG - chr4_1:52680839-52680858 None:intergenic 50.0%
AAGACCGCACACCACATGAT+AGG - chr4_1:52681175-52681194 None:intergenic 50.0%
TTGGGAATTGGGTGGGGTTA+TGG - chr4_1:52681262-52681281 None:intergenic 50.0%
CACAACTCTCTGAGCACCAA+TGG - chr4_1:52681452-52681471 None:intergenic 50.0%
! CTGATGGATGGCTAGCTATG+GGG - chr4_1:52681713-52681732 None:intergenic 50.0%
! GCTGATGGATGGCTAGCTAT+GGG - chr4_1:52681714-52681733 None:intergenic 50.0%
! AGCTGATGGATGGCTAGCTA+TGG - chr4_1:52681715-52681734 None:intergenic 50.0%
TTACTTCTGCGTTGTACCCG+AGG - chr4_1:52682138-52682157 None:intergenic 50.0%
CTAGGAAAGCAGAAGGTGGA+GGG - chr4_1:52682285-52682304 None:intergenic 50.0%
! TTTGGGGCTAGGAAAGCAGA+AGG - chr4_1:52682292-52682311 None:intergenic 50.0%
!!! ACAGTGCACATTTTGGGGCT+AGG - chr4_1:52682303-52682322 None:intergenic 50.0%
TAGCCCCAAAATGTGCACTG+TGG + chr4_1:52682302-52682321 Msa0554940:CDS 50.0%
AGCCCCAAAATGTGCACTGT+GGG + chr4_1:52682303-52682322 Msa0554940:CDS 50.0%
! GTCCCACAGTGCACATTTTG+GGG - chr4_1:52682308-52682327 None:intergenic 50.0%
! CAGTCCCACAGTGCACATTT+TGG - chr4_1:52682310-52682329 None:intergenic 50.0%
ACTGTTTCAGGCCTGCTCAA+GGG + chr4_1:52682326-52682345 Msa0554940:CDS 50.0%
! ACTCCAATTTTGCGACCTGG+TGG + chr4_1:52682418-52682437 Msa0554940:CDS 50.0%
ATGCCACCAGGTCGCAAAAT+TGG - chr4_1:52682424-52682443 None:intergenic 50.0%
GAAGCAGCACCTTCACACTT+AGG - chr4_1:52682514-52682533 None:intergenic 50.0%
AAAGCCCCTTGGAATGCTTC+AGG + chr4_1:52682538-52682557 Msa0554940:CDS 50.0%
AGCGTGAAACTGTTAGGGAG+TGG + chr4_1:52682767-52682786 Msa0554940:CDS 50.0%
CCAGAGTCAAATGCCCTTCT+AGG - chr4_1:52682808-52682827 None:intergenic 50.0%
!! CCTAGAAGGGCATTTGACTC+TGG + chr4_1:52682805-52682824 Msa0554940:CDS 50.0%
!! GGGCATTTGACTCTGGAACT+AGG + chr4_1:52682812-52682831 Msa0554940:CDS 50.0%
ACGCCCACAATAATCAGGGA+TGG - chr4_1:52682848-52682867 None:intergenic 50.0%
ATCCCTGATTATTGTGGGCG+TGG + chr4_1:52682847-52682866 Msa0554940:CDS 50.0%
CAACCACGCCCACAATAATC+AGG - chr4_1:52682853-52682872 None:intergenic 50.0%
CTGATTATTGTGGGCGTGGT+TGG + chr4_1:52682851-52682870 Msa0554940:CDS 50.0%
GCAGGTGATGAAGGAACATG+GGG + chr4_1:52682888-52682907 Msa0554940:CDS 50.0%
CAGGTGATGAAGGAACATGG+GGG + chr4_1:52682889-52682908 Msa0554940:CDS 50.0%
CAAGTCGACGACCAGTCATT+TGG - chr4_1:52683284-52683303 None:intergenic 50.0%
TCAGGATGGGGTTCAGATTG+TGG + chr4_1:52683312-52683331 Msa0554940:three_prime_UTR 50.0%
ACTTCAACAAATCGCCGCCG+AGG + chr4_1:52679883-52679902 Msa0554940:five_prime_UTR 55.0%
CTTCAACAAATCGCCGCCGA+GGG + chr4_1:52679884-52679903 Msa0554940:five_prime_UTR 55.0%
AATGAGAACCCTACCCTCGG+CGG - chr4_1:52679900-52679919 None:intergenic 55.0%
GGGTAGGGTTCTCATTCCAC+CGG + chr4_1:52679904-52679923 Msa0554940:five_prime_UTR 55.0%
TTGGAGGAAGGTTGTTCCGG+TGG - chr4_1:52679923-52679942 None:intergenic 55.0%
CGGTTGGAGGAAGGTTGTTC+CGG - chr4_1:52679926-52679945 None:intergenic 55.0%
CCGGACTCGTTAAATGACGG+TGG + chr4_1:52680097-52680116 Msa0554940:intron 55.0%
ACAGTTGAGCTAGTTCCCCG+GGG - chr4_1:52680546-52680565 None:intergenic 55.0%
!! ATACGGATGGCTTGGTGGCT+GGG - chr4_1:52680831-52680850 None:intergenic 55.0%
!! TATACGGATGGCTTGGTGGC+TGG - chr4_1:52680832-52680851 None:intergenic 55.0%
! GGGTTATACGGATGGCTTGG+TGG - chr4_1:52680836-52680855 None:intergenic 55.0%
TAGCTCAGGCATGGCTCAGT+TGG + chr4_1:52682030-52682049 Msa0554940:CDS 55.0%
ATTTGTCGGGACCACAGCCT+CGG + chr4_1:52682118-52682137 Msa0554940:CDS 55.0%
GAAGGTGGAGGGCGGATATT+TGG - chr4_1:52682274-52682293 None:intergenic 55.0%
GCTAGGAAAGCAGAAGGTGG+AGG - chr4_1:52682286-52682305 None:intergenic 55.0%
GTGCACTGTGGGACTGTTTC+AGG + chr4_1:52682314-52682333 Msa0554940:CDS 55.0%
GACTGTTTCAGGCCTGCTCA+AGG + chr4_1:52682325-52682344 Msa0554940:CDS 55.0%
CACTGCTCTAACCCTTGAGC+AGG - chr4_1:52682340-52682359 None:intergenic 55.0%
TCAAGGGTTAGAGCAGTGCC+AGG + chr4_1:52682342-52682361 Msa0554940:CDS 55.0%
GTGGGCATCCCTAAGTGTGA+AGG + chr4_1:52682502-52682521 Msa0554940:CDS 55.0%
CTGCTTCAACGAAAGCCCCT+TGG + chr4_1:52682527-52682546 Msa0554940:CDS 55.0%
GGCGTGGTTGGCATGAATCA+AGG + chr4_1:52682863-52682882 Msa0554940:CDS 55.0%
AACAAATCGCCGCCGAGGGT+AGG + chr4_1:52679888-52679907 Msa0554940:five_prime_UTR 60.0%
ACAAATCGCCGCCGAGGGTA+GGG + chr4_1:52679889-52679908 Msa0554940:five_prime_UTR 60.0%
ACCTTCCTCCAACCGCCTCA+AGG + chr4_1:52679931-52679950 Msa0554940:five_prime_UTR 60.0%
ACCTTGAGGCGGTTGGAGGA+AGG - chr4_1:52679935-52679954 None:intergenic 60.0%
!! TACGGATGGCTTGGTGGCTG+GGG - chr4_1:52680830-52680849 None:intergenic 60.0%
TTTGTCGGGACCACAGCCTC+GGG + chr4_1:52682119-52682138 Msa0554940:CDS 60.0%
GGAAAGCAGAAGGTGGAGGG+CGG - chr4_1:52682282-52682301 None:intergenic 60.0%
GGGGCTAGGAAAGCAGAAGG+TGG - chr4_1:52682289-52682308 None:intergenic 60.0%
! GGGAGCCTTGGTTCGTTCCC+CGG + chr4_1:52680526-52680545 Msa0554940:CDS 65.0%
! GGAGCCTTGGTTCGTTCCCC+GGG + chr4_1:52680527-52680546 Msa0554940:CDS 65.0%
! GAGCCTTGGTTCGTTCCCCG+GGG + chr4_1:52680528-52680547 Msa0554940:CDS 65.0%
GTTCCCCGGGGAACGAACCA+AGG - chr4_1:52680534-52680553 None:intergenic 65.0%
GGGGTGGGGGAGTTAAGGAG+TGG - chr4_1:52680811-52680830 None:intergenic 65.0%
TGGCTGGGGTGGGGGAGTTA+AGG - chr4_1:52680816-52680835 None:intergenic 65.0%
!! ATGGCTTGGTGGCTGGGGTG+GGG - chr4_1:52680825-52680844 None:intergenic 65.0%
!! GATGGCTTGGTGGCTGGGGT+GGG - chr4_1:52680826-52680845 None:intergenic 65.0%
CTGCGTTGTACCCGAGGCTG+TGG - chr4_1:52682132-52682151 None:intergenic 65.0%
GCTGCTCCGTCGCCAGATGA+TGG + chr4_1:52683171-52683190 Msa0554940:CDS 65.0%
!! TGGCTTGGTGGCTGGGGTGG+GGG - chr4_1:52680824-52680843 None:intergenic 70.0%
!! GGATGGCTTGGTGGCTGGGG+TGG - chr4_1:52680827-52680846 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 52679825 52683529 52679825 ID=Msa0554940;Name=Msa0554940
chr4_1 mRNA 52679825 52683529 52679825 ID=Msa0554940-mRNA-1;Parent=Msa0554940;Name=Msa0554940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=134|1|1|1|1|1|5|275|500
chr4_1 exon 52679825 52679952 52679825 ID=Msa0554940-mRNA-1:exon:15197;Parent=Msa0554940-mRNA-1
chr4_1 exon 52680220 52680450 52680220 ID=Msa0554940-mRNA-1:exon:15198;Parent=Msa0554940-mRNA-1
chr4_1 exon 52680523 52680681 52680523 ID=Msa0554940-mRNA-1:exon:15199;Parent=Msa0554940-mRNA-1
chr4_1 exon 52681953 52682559 52681953 ID=Msa0554940-mRNA-1:exon:15200;Parent=Msa0554940-mRNA-1
chr4_1 exon 52682743 52683529 52682743 ID=Msa0554940-mRNA-1:exon:15201;Parent=Msa0554940-mRNA-1
chr4_1 five_prime_UTR 52679825 52679952 52679825 ID=Msa0554940-mRNA-1:five_prime_utr;Parent=Msa0554940-mRNA-1
chr4_1 five_prime_UTR 52680220 52680225 52680220 ID=Msa0554940-mRNA-1:five_prime_utr;Parent=Msa0554940-mRNA-1
chr4_1 CDS 52680226 52680450 52680226 ID=Msa0554940-mRNA-1:cds;Parent=Msa0554940-mRNA-1
chr4_1 CDS 52680523 52680681 52680523 ID=Msa0554940-mRNA-1:cds;Parent=Msa0554940-mRNA-1
chr4_1 CDS 52681953 52682559 52681953 ID=Msa0554940-mRNA-1:cds;Parent=Msa0554940-mRNA-1
chr4_1 CDS 52682743 52683254 52682743 ID=Msa0554940-mRNA-1:cds;Parent=Msa0554940-mRNA-1
chr4_1 three_prime_UTR 52683255 52683529 52683255 ID=Msa0554940-mRNA-1:three_prime_utr;Parent=Msa0554940-mRNA-1
Gene Sequence

>Msa0554940

ATGATGAAAGAAAACTCAGGGGGAAAATATGGATCTTCTTCTTCTCAGAAATCCATGAAAGAGAAGGAGAGACACATGGTGAATAAGATTCAAGGGATTTTCACCAATCTTCAGTCTGCAAGAAAGGAAAGCAGAGCTACTGATATTCTCATCATTGAGGAGCAGATGCATCAGTTGCTTCGAGAGTGGAAGGCAGAACTCGAGTCTCCAGCTACCTCCTTAAATGATGGGAGCCTTGGTTCGTTCCCCGGGGAACTAGCTCAACTGTTACAAGGATTTGAGGAGAAAGACGACGCCATCAGTCCTCTGACTAAACCTGGGCTGTTTAACACTGATTACCATCAAAATAACATTACTGATAGCAATTATGAGTTTTATCAGGAGAAATGTTTTGATAATAACCAGTCACTAGGTCATACTTTCGAAGGCTCTGCTTCAACTCTGTTCAGCAGTCCTTTAAATAGCTCAGGCATGGCTCAGTTGGATTTTCATTCATTCGGTTTGAATCAAGATATGGATCACAACGCTGTAGGTCACAGCTCTGATTTAATTTGTCGGGACCACAGCCTCGGGTACAACGCAGAAGTAAAAAACTCAGAATCAGCTAAATTTAATCTTGAAGAAGGCTTTGATGAGTATGATCAACTTTTCGGAGATAATTACACCACAAATTTTGGAGACAACTTTATACCTAATATTCTTCCAAATATCCGCCCTCCACCTTCTGCTTTCCTAGCCCCAAAATGTGCACTGTGGGACTGTTTCAGGCCTGCTCAAGGGTTAGAGCAGTGCCAGGATTACTGTAGTAGTAATCACGAGCTTTTGGCAAAAAGTGAGGATGAGGGCAAGACTCCAATTTTGCGACCTGGTGGCATTGATGTGAAAGACGGTCCTTTGTTTGCTGCTGTTCTTGCAAAGACACTGGGAAAAGAAGTGGGCATCCCTAAGTGTGAAGGTGCTGCTTCAACGAAAGCCCCTTGGAATGCTTCAGAGTTGTTTGACATTTCTCTTCTTGAGCGTGAAACTGTTAGGGAGTGGCTGTTCTTTGACAAGCCTAGAAGGGCATTTGACTCTGGAACTAGGAAACAGAGATCCATCCCTGATTATTGTGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTGATGAAGGAACATGGGGGACAAAAGAGATCATATTACATGGACCCACAGCCTGTTGATTATGTTGAGTGGCATTTGTACGAGTATGAAATCAATAACCATGAAGGTTGCTTACCAGAAAAAAATAACCATGATCGTTGCTTATCAACAAAAATTAACCATGGTTGTGCATTATACAGACTAGAATTAAAGCGTGTAGATAAAAAAAAAAGTCCTAAAGGAAAAGTGACTAAGGAATCACTTGCTGATTTACAAAACAAGATGGGAAAGCTAACTGCTGCTGCTCCGTCGCCAGATGATGGAAAATCTGTCAAGGGAAAAACCGAGGCCAAGTCTCAGAATATTGGCCTGCCTGAATATTAA
Protein sequence

>Msa0554940

MMKENSGGKYGSSSSQKSMKEKERHMVNKIQGIFTNLQSARKESRATDILIIEEQMHQLLREWKAELESPATSLNDGSLGSFPGELAQLLQGFEEKDDAISPLTKPGLFNTDYHQNNITDSNYEFYQEKCFDNNQSLGHTFEGSASTLFSSPLNSSGMAQLDFHSFGLNQDMDHNAVGHSSDLICRDHSLGYNAEVKNSESAKFNLEEGFDEYDQLFGDNYTTNFGDNFIPNILPNIRPPPSAFLAPKCALWDCFRPAQGLEQCQDYCSSNHELLAKSEDEGKTPILRPGGIDVKDGPLFAAVLAKTLGKEVGIPKCEGAASTKAPWNASELFDISLLERETVREWLFFDKPRRAFDSGTRKQRSIPDYCGRGWHESRKQVMKEHGGQKRSYYMDPQPVDYVEWHLYEYEINNHEGCLPEKNNHDRCLSTKINHGCALYRLELKRVDKKKSPKGKVTKESLADLQNKMGKLTAAAPSPDDGKSVKGKTEAKSQNIGLPEY*