AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555270 MtrunA17_Chr4g0041151 93.115 305 15 2 1 302 1 302 0.0 510
Msa0555270 MtrunA17_Chr2g0283871 49.379 322 108 6 19 303 11 314 5.27e-87 263
Msa0555270 MtrunA17_Chr8g0344681 39.310 290 143 7 27 297 64 339 1.16e-46 161
Msa0555270 MtrunA17_Chr2g0325841 33.924 395 156 11 8 305 23 409 3.88e-40 149
Msa0555270 MtrunA17_Chr2g0331931 31.000 300 145 8 2 293 248 493 1.42e-27 112
Msa0555270 MtrunA17_Chr1g0179531 37.255 102 57 3 31 131 133 228 1.39e-16 80.1
Msa0555270 MtrunA17_Chr6g0485241 38.947 95 52 2 31 124 130 219 1.67e-16 79.3
Msa0555270 MtrunA17_Chr3g0082261 26.148 283 176 10 26 291 33 299 1.69e-14 72.8
Msa0555270 MtrunA17_Chr4g0066271 35.922 103 63 2 30 131 116 216 1.87e-14 73.6
Msa0555270 MtrunA17_Chr1g0164461 33.333 102 60 2 26 127 33 126 3.51e-12 64.3
Msa0555270 MtrunA17_Chr7g0250201 41.429 70 40 1 30 99 45 113 3.56e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555270 AT3G58630.2 47.678 323 123 9 1 299 1 301 1.86e-74 231
Msa0555270 AT3G58630.1 47.678 323 123 9 1 299 1 301 2.68e-74 231
Msa0555270 AT3G11100.1 40.345 290 122 7 13 302 9 247 1.77e-49 165
Msa0555270 AT5G05550.3 39.493 276 116 5 27 302 20 244 3.45e-49 164
Msa0555270 AT5G05550.1 39.493 276 116 5 27 302 20 244 4.45e-49 164
Msa0555270 AT5G05550.2 39.636 275 115 5 27 301 20 243 6.07e-49 164
Msa0555270 AT3G14180.1 59.615 104 38 2 27 130 80 179 3.07e-34 130
Msa0555270 AT3G14180.1 45.946 74 38 1 220 293 338 409 1.33e-14 74.3
Msa0555270 AT1G54060.1 51.485 101 44 2 27 127 90 185 6.99e-22 95.1
Msa0555270 AT3G10030.2 39.669 121 66 3 16 134 144 259 1.45e-20 92.4
Msa0555270 AT3G10030.1 39.669 121 66 3 16 134 144 259 1.57e-20 92.4
Msa0555270 AT3G54390.1 28.223 287 173 10 19 299 23 282 1.02e-15 76.6
Msa0555270 AT3G54390.2 28.223 287 173 10 19 299 39 298 1.54e-15 76.3
Msa0555270 AT3G24490.1 38.298 94 52 2 31 124 90 177 2.83e-15 75.9
Msa0555270 AT2G44730.1 34.737 95 59 2 30 123 63 155 6.30e-12 66.2

Find 109 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGAAACCAAACTCCTTA+TGG 0.211114 4_1:+53136905 None:intergenic
TGAAACGCGGTTGTTGAGTT+TGG 0.293921 4_1:+53137610 None:intergenic
GGCTGCTGCGGCGGCGGCTG+AGG 0.328447 4_1:-53136986 Msa0555270:CDS
ACAGAGACAAATGGTGGAAT+TGG 0.329589 4_1:-53136824 Msa0555270:CDS
GATGCAGTTTGTGAAGGATT+TGG 0.330097 4_1:-53136791 Msa0555270:CDS
CTTCCACCCTCATCGACGCC+TGG 0.342555 4_1:-53137482 Msa0555270:CDS
AACTCAACAACCGCGTTTCA+TGG 0.344366 4_1:-53137607 Msa0555270:exon
ACGTCGCGCTTTCTTGTTAC+CGG 0.348904 4_1:+53137371 None:intergenic
GACGAAGGTTACCGCGGTTA+AGG 0.349488 4_1:+53137442 None:intergenic
TCCCCGTCCGCGAAGACTGC+TGG 0.376207 4_1:-53137518 Msa0555270:CDS
TCGTCTCTATTCGCCATTGC+CGG 0.376976 4_1:+53137045 None:intergenic
CGCGGCGGCTGCTGCGGCGG+CGG 0.380481 4_1:-53136992 Msa0555270:CDS
GATGGGACCCATAAGGAGTT+TGG 0.382677 4_1:-53136913 Msa0555270:CDS
TCTGAAACCAAACTCCTTAT+GGG 0.394233 4_1:+53136906 None:intergenic
GTAACCTTCGTCAGAAAACT+TGG 0.396096 4_1:-53137431 Msa0555270:CDS
CTGGTAACCGCCGTCGGATT+CGG 0.403172 4_1:+53137278 None:intergenic
GGTGGAGAAGGTGGAGATTG+AGG 0.403697 4_1:+53137138 None:intergenic
ATCGTTCCGGCGGAATTTCT+CGG 0.404517 4_1:-53137019 Msa0555270:CDS
GAGGGTGGAAGTTGCGTCTT+CGG 0.412190 4_1:+53137494 None:intergenic
TCTTCTTTAACGTGTCGATT+CGG 0.420026 4_1:+53137328 None:intergenic
GAAGGTGGAGATTGAGGAGG+TGG 0.431088 4_1:+53137144 None:intergenic
AGTACAAGATCGAGAAAGCT+AGG 0.431421 4_1:-53137305 Msa0555270:CDS
TTCCACCCTCATCGACGCCT+GGG 0.432995 4_1:-53137481 Msa0555270:CDS
AAACGCACTAAACGTGCTTC+TGG 0.443118 4_1:-53136715 Msa0555270:CDS
GTGTGGAGTCAGAGGAATGG+AGG 0.449241 4_1:-53136957 Msa0555270:CDS
GTCCAGCAGTCTTCGCGGAC+GGG 0.450561 4_1:+53137516 None:intergenic
ACTAAACGTGCTTCTGGTTC+CGG 0.451057 4_1:-53136709 Msa0555270:intron
GGCGGCGTGGACGTCGTTGA+CGG 0.453788 4_1:+53137392 None:intergenic
CATCCGGTCGGTCCCCGATC+CGG 0.459199 4_1:-53137081 Msa0555270:CDS
TGGTCGGCGGACGGAGGCTA+AGG 0.476705 4_1:+53137657 None:intergenic
TGGTTGCTTGCAGCAGAAGT+TGG 0.477729 4_1:-53136545 Msa0555270:intron
ATAGAGACGAAGCATCGTTC+CGG 0.481552 4_1:-53137032 Msa0555270:CDS
TGTGGAGTCAGAGGAATGGA+GGG 0.481728 4_1:-53136956 Msa0555270:CDS
GGTTGCTTGCAGCAGAAGTT+GGG 0.485653 4_1:-53136544 Msa0555270:intron
GTTCGCGGCGGCTGCTGCGG+CGG 0.489343 4_1:-53136995 Msa0555270:CDS
GGCGTTCGCGGCGGCTGCTG+CGG 0.494203 4_1:-53136998 Msa0555270:CDS
ACCGTCTCCACCGTCGCCTC+CGG 0.494561 4_1:-53137118 Msa0555270:CDS
TCCAGCAGTCTTCGCGGACG+GGG 0.495685 4_1:+53137517 None:intergenic
TGGAGTCAGAGGAATGGAGG+GGG 0.503575 4_1:-53136954 Msa0555270:CDS
ACTCGTCTTGACGTTCTCAT+CGG 0.505614 4_1:-53137237 Msa0555270:CDS
CAGTCTTCGCGGACGGGGAA+CGG 0.508470 4_1:+53137522 None:intergenic
GCGGAATTTCTCGGCGTTCG+CGG 0.513561 4_1:-53137010 Msa0555270:CDS
GTTGATAGGTGACGGAGCTC+CGG 0.518538 4_1:+53137575 None:intergenic
CGCGGCGGAACGGAGTTGAT+AGG 0.521754 4_1:+53137561 None:intergenic
TCTCCCCGCCGGTGAATGTA+CGG 0.525928 4_1:-53137191 Msa0555270:CDS
AGAAAACGATGGGACCCATA+AGG 0.527107 4_1:-53136920 Msa0555270:CDS
GGTCCAGCAGTCTTCGCGGA+CGG 0.531762 4_1:+53137515 None:intergenic
GACGGTGGAGACGGTGGAGA+AGG 0.533943 4_1:+53137126 None:intergenic
GCCGGAGGCGACGGTGGAGA+CGG 0.537471 4_1:+53137117 None:intergenic
GGAGTAGACCGTACATTCAC+CGG 0.542070 4_1:+53137183 None:intergenic
TCAGAGAATGCAGTTATACA+TGG 0.544592 4_1:-53136764 Msa0555270:CDS
GGCAGAAAGTGTGGAGTCAG+AGG 0.545717 4_1:-53136965 Msa0555270:CDS
GTTCCGGATCGGGGACCGAC+CGG 0.547076 4_1:+53137078 None:intergenic
ATTATCCACGCCGGAGGCGA+CGG 0.547703 4_1:+53137108 None:intergenic
GTGGACGTCGTTGACGGCGT+CGG 0.549602 4_1:+53137398 None:intergenic
GCAGAGGATGCAGTTTGTGA+AGG 0.549708 4_1:-53136797 Msa0555270:CDS
GGCGATGACGACGGAAGACG+CGG 0.549924 4_1:+53137543 None:intergenic
CTTCGGTCCAGCAGTCTTCG+CGG 0.552125 4_1:+53137511 None:intergenic
GTCGAGGTAGCGTTCACCCC+AGG 0.553968 4_1:+53137464 None:intergenic
ACGGCGGTTACCAGAGTCCC+TGG 0.554940 4_1:-53137269 Msa0555270:CDS
GGTGGAGACGGTGGAGAAGG+TGG 0.555662 4_1:+53137129 None:intergenic
TGGTTTCAGAGAGCTCGCTC+AGG 0.555951 4_1:-53136893 Msa0555270:CDS
AAAGTGTGGAGTCAGAGGAA+TGG 0.557513 4_1:-53136960 Msa0555270:CDS
AGCTTCAAAACAGAGACAAA+TGG 0.558007 4_1:-53136833 Msa0555270:CDS
CGACGGAAGACGCGGCGGAA+CGG 0.559377 4_1:+53137551 None:intergenic
GTCAACGACGTCCACGCCGC+CGG 0.559754 4_1:-53137390 Msa0555270:CDS
GGCGTGGATAATCTCTCATC+CGG 0.563671 4_1:-53137097 Msa0555270:CDS
TTCACCCCAGGCGTCGATGA+GGG 0.566151 4_1:+53137476 None:intergenic
GGTGGACGTTTGACGACGGT+TGG 0.571165 4_1:+53137162 None:intergenic
GGTTACCGCGGTTAAGGTCG+AGG 0.573221 4_1:+53137448 None:intergenic
ACCCCAGGCGTCGATGAGGG+TGG 0.576167 4_1:+53137479 None:intergenic
CTCCACCGTCGCCTCCGGCG+TGG 0.577896 4_1:-53137113 Msa0555270:CDS
GTACAAGATCGAGAAAGCTA+GGG 0.590074 4_1:-53137304 Msa0555270:CDS
ACGGGGAACGGCGATGACGA+CGG 0.590204 4_1:+53137534 None:intergenic
TGGATAATCTCTCATCCGGT+CGG 0.599124 4_1:-53137093 Msa0555270:CDS
CGTTTCATGGACATCATCGC+CGG 0.603278 4_1:-53137594 Msa0555270:exon
ATCCACGCCGGAGGCGACGG+TGG 0.604964 4_1:+53137111 None:intergenic
TGTTGAGTTTGGAAAATCGA+CGG 0.605500 4_1:+53137621 None:intergenic
AGAAAGGAAGAGAAAACGAT+GGG 0.606592 4_1:-53136930 Msa0555270:CDS
CTTTCTTGTTACCGGCGGCG+TGG 0.607096 4_1:+53137379 None:intergenic
TCGTCAGAAAACTTGGCAAG+AGG 0.608905 4_1:-53137424 Msa0555270:CDS
GTGGAGTCAGAGGAATGGAG+GGG 0.611126 4_1:-53136955 Msa0555270:CDS
TAGACCGTACATTCACCGGC+GGG 0.615042 4_1:+53137187 None:intergenic
GTTCACCCCAGGCGTCGATG+AGG 0.617071 4_1:+53137475 None:intergenic
GGAGGCGACGGTGGAGACGG+TGG 0.619172 4_1:+53137120 None:intergenic
TGGTGGAATTGGAGAAGCAG+AGG 0.620275 4_1:-53136813 Msa0555270:CDS
GGCGGCTGAGGCAGAAAGTG+TGG 0.620535 4_1:-53136974 Msa0555270:CDS
TCCACCCTCATCGACGCCTG+GGG 0.621538 4_1:-53137480 Msa0555270:CDS
GGAACGGAGTTGATAGGTGA+CGG 0.622230 4_1:+53137567 None:intergenic
GGGACTCTGGTAACCGCCGT+CGG 0.624801 4_1:+53137272 None:intergenic
GAGACGAAGCATCGTTCCGG+CGG 0.625337 4_1:-53137029 Msa0555270:CDS
GGAGAAGGTGGAGATTGAGG+AGG 0.635406 4_1:+53137141 None:intergenic
GAATTTCTCGGCGTTCGCGG+CGG 0.637732 4_1:-53137007 Msa0555270:CDS
AAGAAAGGAAGAGAAAACGA+TGG 0.648071 4_1:-53136931 Msa0555270:CDS
AGGAGGTGGACGTTTGACGA+CGG 0.650309 4_1:+53137158 None:intergenic
CGAACGCCGAGAAATTCCGC+CGG 0.653177 4_1:+53137013 None:intergenic
GCAGTTATACATGGAAACGC+AGG 0.653381 4_1:-53136755 Msa0555270:CDS
TGAGAGATTATCCACGCCGG+AGG 0.660526 4_1:+53137102 None:intergenic
GAGTTTGGAAAATCGACGGA+CGG 0.661497 4_1:+53137625 None:intergenic
TTCAAAACAGAGACAAATGG+TGG 0.662111 4_1:-53136830 Msa0555270:CDS
GCTAGGGTTTCCGAATCCGA+CGG 0.665069 4_1:-53137288 Msa0555270:CDS
TCGCGCTTTCTTGTTACCGG+CGG 0.665856 4_1:+53137374 None:intergenic
AGGGTTTCCGAATCCGACGG+CGG 0.672515 4_1:-53137285 Msa0555270:CDS
GATGACGACGGAAGACGCGG+CGG 0.700874 4_1:+53137546 None:intergenic
AGACCGTACATTCACCGGCG+GGG 0.706976 4_1:+53137188 None:intergenic
CGCTACCTCGACCTTAACCG+CGG 0.709531 4_1:-53137453 Msa0555270:CDS
GCGATGATGTCCATGAAACG+CGG 0.716790 4_1:+53137597 None:intergenic
GTAGACCGTACATTCACCGG+CGG 0.721299 4_1:+53137186 None:intergenic
GGATGAGAGATTATCCACGC+CGG 0.738065 4_1:+53137099 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATCATAAATTTGAAAC+AGG + chr4_1:53137552-53137571 None:intergenic 20.0%
!! ATCACATTAATGTGTAAATT+TGG - chr4_1:53137651-53137670 Msa0555270:five_prime_UTR 20.0%
!!! TGTGTAAATTTGGTTTTATA+TGG - chr4_1:53137661-53137680 Msa0555270:five_prime_UTR 20.0%
!!! TATTTTGTTACTTGTGATAA+TGG - chr4_1:53137705-53137724 Msa0555270:five_prime_UTR 20.0%
!!! AATGATCATAAATTTGAAAC+AGG + chr4_1:53137552-53137571 None:intergenic 20.0%
!! ATCACATTAATGTGTAAATT+TGG - chr4_1:53137651-53137670 Msa0555270:five_prime_UTR 20.0%
!!! TGTGTAAATTTGGTTTTATA+TGG - chr4_1:53137661-53137680 Msa0555270:five_prime_UTR 20.0%
!!! TATTTTGTTACTTGTGATAA+TGG - chr4_1:53137705-53137724 Msa0555270:five_prime_UTR 20.0%
!!! TTGTATTTGACTTTTTGATC+TGG - chr4_1:53137570-53137589 Msa0555270:CDS 25.0%
! CTCATGCTTAATGATTATTA+GGG - chr4_1:53137620-53137639 Msa0555270:five_prime_UTR 25.0%
! TCATGCTTAATGATTATTAG+GGG - chr4_1:53137621-53137640 Msa0555270:five_prime_UTR 25.0%
!!! TTGTATTTGACTTTTTGATC+TGG - chr4_1:53137570-53137589 Msa0555270:CDS 25.0%
! CTCATGCTTAATGATTATTA+GGG - chr4_1:53137620-53137639 Msa0555270:five_prime_UTR 25.0%
! TCATGCTTAATGATTATTAG+GGG - chr4_1:53137621-53137640 Msa0555270:five_prime_UTR 25.0%
GCTCATGCTTAATGATTATT+AGG - chr4_1:53137619-53137638 Msa0555270:five_prime_UTR 30.0%
GCTCATGCTTAATGATTATT+AGG - chr4_1:53137619-53137638 Msa0555270:five_prime_UTR 30.0%
TGTTGAGTTTGGAAAATCGA+CGG + chr4_1:53136608-53136627 None:intergenic 35.0%
!! TCTTCTTTAACGTGTCGATT+CGG + chr4_1:53136901-53136920 None:intergenic 35.0%
AAGAAAGGAAGAGAAAACGA+TGG - chr4_1:53137295-53137314 Msa0555270:CDS 35.0%
AGAAAGGAAGAGAAAACGAT+GGG - chr4_1:53137296-53137315 Msa0555270:CDS 35.0%
! TCTGAAACCAAACTCCTTAT+GGG + chr4_1:53137323-53137342 None:intergenic 35.0%
AGCTTCAAAACAGAGACAAA+TGG - chr4_1:53137393-53137412 Msa0555270:CDS 35.0%
TTCAAAACAGAGACAAATGG+TGG - chr4_1:53137396-53137415 Msa0555270:CDS 35.0%
TCAGAGAATGCAGTTATACA+TGG - chr4_1:53137462-53137481 Msa0555270:CDS 35.0%
TGTTGAGTTTGGAAAATCGA+CGG + chr4_1:53136608-53136627 None:intergenic 35.0%
!! TCTTCTTTAACGTGTCGATT+CGG + chr4_1:53136901-53136920 None:intergenic 35.0%
AAGAAAGGAAGAGAAAACGA+TGG - chr4_1:53137295-53137314 Msa0555270:CDS 35.0%
AGAAAGGAAGAGAAAACGAT+GGG - chr4_1:53137296-53137315 Msa0555270:CDS 35.0%
! TCTGAAACCAAACTCCTTAT+GGG + chr4_1:53137323-53137342 None:intergenic 35.0%
AGCTTCAAAACAGAGACAAA+TGG - chr4_1:53137393-53137412 Msa0555270:CDS 35.0%
TTCAAAACAGAGACAAATGG+TGG - chr4_1:53137396-53137415 Msa0555270:CDS 35.0%
TCAGAGAATGCAGTTATACA+TGG - chr4_1:53137462-53137481 Msa0555270:CDS 35.0%
GTAACCTTCGTCAGAAAACT+TGG - chr4_1:53136795-53136814 Msa0555270:CDS 40.0%
AGTACAAGATCGAGAAAGCT+AGG - chr4_1:53136921-53136940 Msa0555270:CDS 40.0%
GTACAAGATCGAGAAAGCTA+GGG - chr4_1:53136922-53136941 Msa0555270:CDS 40.0%
ACGTCAAGACGAGTGAAAAA+CGG + chr4_1:53136983-53137002 None:intergenic 40.0%
!! CTCTGAAACCAAACTCCTTA+TGG + chr4_1:53137324-53137343 None:intergenic 40.0%
! ACAGAGACAAATGGTGGAAT+TGG - chr4_1:53137402-53137421 Msa0555270:CDS 40.0%
GATGCAGTTTGTGAAGGATT+TGG - chr4_1:53137435-53137454 Msa0555270:CDS 40.0%
TTGAAACAGGTTAAGCTCAC+CGG + chr4_1:53137539-53137558 None:intergenic 40.0%
GTAACCTTCGTCAGAAAACT+TGG - chr4_1:53136795-53136814 Msa0555270:CDS 40.0%
AGTACAAGATCGAGAAAGCT+AGG - chr4_1:53136921-53136940 Msa0555270:CDS 40.0%
GTACAAGATCGAGAAAGCTA+GGG - chr4_1:53136922-53136941 Msa0555270:CDS 40.0%
ACGTCAAGACGAGTGAAAAA+CGG + chr4_1:53136983-53137002 None:intergenic 40.0%
!! CTCTGAAACCAAACTCCTTA+TGG + chr4_1:53137324-53137343 None:intergenic 40.0%
! ACAGAGACAAATGGTGGAAT+TGG - chr4_1:53137402-53137421 Msa0555270:CDS 40.0%
GATGCAGTTTGTGAAGGATT+TGG - chr4_1:53137435-53137454 Msa0555270:CDS 40.0%
TTGAAACAGGTTAAGCTCAC+CGG + chr4_1:53137539-53137558 None:intergenic 40.0%
GAGTTTGGAAAATCGACGGA+CGG + chr4_1:53136604-53136623 None:intergenic 45.0%
TGAAACGCGGTTGTTGAGTT+TGG + chr4_1:53136619-53136638 None:intergenic 45.0%
AACTCAACAACCGCGTTTCA+TGG - chr4_1:53136619-53136638 Msa0555270:intron 45.0%
! TTTTCTGACGAAGGTTACCG+CGG + chr4_1:53136793-53136812 None:intergenic 45.0%
! CTTGCCAAGTTTTCTGACGA+AGG + chr4_1:53136802-53136821 None:intergenic 45.0%
TCGTCAGAAAACTTGGCAAG+AGG - chr4_1:53136802-53136821 Msa0555270:CDS 45.0%
! TCGGTTTTTGCACTGAACGT+CGG + chr4_1:53136882-53136901 None:intergenic 45.0%
ACTCGTCTTGACGTTCTCAT+CGG - chr4_1:53136989-53137008 Msa0555270:CDS 45.0%
! TCTCATCGGCGATACTTTTC+CGG - chr4_1:53137003-53137022 Msa0555270:CDS 45.0%
TGGATAATCTCTCATCCGGT+CGG - chr4_1:53137133-53137152 Msa0555270:CDS 45.0%
! ACGTTTTTGTGTTCCGGATC+GGG + chr4_1:53137161-53137180 None:intergenic 45.0%
! GACGTTTTTGTGTTCCGGAT+CGG + chr4_1:53137162-53137181 None:intergenic 45.0%
ATCCGGAACACAAAAACGTC+CGG - chr4_1:53137162-53137181 Msa0555270:CDS 45.0%
AACACAAAAACGTCCGGCAA+TGG - chr4_1:53137168-53137187 Msa0555270:CDS 45.0%
!! ATAGAGACGAAGCATCGTTC+CGG - chr4_1:53137194-53137213 Msa0555270:CDS 45.0%
AAAGTGTGGAGTCAGAGGAA+TGG - chr4_1:53137266-53137285 Msa0555270:CDS 45.0%
AGAAAACGATGGGACCCATA+AGG - chr4_1:53137306-53137325 Msa0555270:CDS 45.0%
GCAGTTATACATGGAAACGC+AGG - chr4_1:53137471-53137490 Msa0555270:CDS 45.0%
AAACGCACTAAACGTGCTTC+TGG - chr4_1:53137511-53137530 Msa0555270:CDS 45.0%
!! ACTAAACGTGCTTCTGGTTC+CGG - chr4_1:53137517-53137536 Msa0555270:CDS 45.0%
GAGTTTGGAAAATCGACGGA+CGG + chr4_1:53136604-53136623 None:intergenic 45.0%
TGAAACGCGGTTGTTGAGTT+TGG + chr4_1:53136619-53136638 None:intergenic 45.0%
AACTCAACAACCGCGTTTCA+TGG - chr4_1:53136619-53136638 Msa0555270:intron 45.0%
! TTTTCTGACGAAGGTTACCG+CGG + chr4_1:53136793-53136812 None:intergenic 45.0%
! CTTGCCAAGTTTTCTGACGA+AGG + chr4_1:53136802-53136821 None:intergenic 45.0%
TCGTCAGAAAACTTGGCAAG+AGG - chr4_1:53136802-53136821 Msa0555270:CDS 45.0%
! TCGGTTTTTGCACTGAACGT+CGG + chr4_1:53136882-53136901 None:intergenic 45.0%
ACTCGTCTTGACGTTCTCAT+CGG - chr4_1:53136989-53137008 Msa0555270:CDS 45.0%
! TCTCATCGGCGATACTTTTC+CGG - chr4_1:53137003-53137022 Msa0555270:CDS 45.0%
TGGATAATCTCTCATCCGGT+CGG - chr4_1:53137133-53137152 Msa0555270:CDS 45.0%
! ACGTTTTTGTGTTCCGGATC+GGG + chr4_1:53137161-53137180 None:intergenic 45.0%
! GACGTTTTTGTGTTCCGGAT+CGG + chr4_1:53137162-53137181 None:intergenic 45.0%
ATCCGGAACACAAAAACGTC+CGG - chr4_1:53137162-53137181 Msa0555270:CDS 45.0%
AACACAAAAACGTCCGGCAA+TGG - chr4_1:53137168-53137187 Msa0555270:CDS 45.0%
!! ATAGAGACGAAGCATCGTTC+CGG - chr4_1:53137194-53137213 Msa0555270:CDS 45.0%
AAAGTGTGGAGTCAGAGGAA+TGG - chr4_1:53137266-53137285 Msa0555270:CDS 45.0%
AGAAAACGATGGGACCCATA+AGG - chr4_1:53137306-53137325 Msa0555270:CDS 45.0%
GCAGTTATACATGGAAACGC+AGG - chr4_1:53137471-53137490 Msa0555270:CDS 45.0%
AAACGCACTAAACGTGCTTC+TGG - chr4_1:53137511-53137530 Msa0555270:CDS 45.0%
!! ACTAAACGTGCTTCTGGTTC+CGG - chr4_1:53137517-53137536 Msa0555270:CDS 45.0%
!! ACGAGAGTCGTTTTACCGTG+CGG + chr4_1:53136536-53136555 None:intergenic 50.0%
!!! TTGAGTTTTTGGTCGGCGGA+CGG + chr4_1:53136581-53136600 None:intergenic 50.0%
!!! ACGGTTGAGTTTTTGGTCGG+CGG + chr4_1:53136585-53136604 None:intergenic 50.0%
!!! CGGACGGTTGAGTTTTTGGT+CGG + chr4_1:53136588-53136607 None:intergenic 50.0%
! TCGACGGACGGTTGAGTTTT+TGG + chr4_1:53136592-53136611 None:intergenic 50.0%
GCGATGATGTCCATGAAACG+CGG + chr4_1:53136632-53136651 None:intergenic 50.0%
CGTTTCATGGACATCATCGC+CGG - chr4_1:53136632-53136651 Msa0555270:intron 50.0%
!! GGAACGGAGTTGATAGGTGA+CGG + chr4_1:53136662-53136681 None:intergenic 50.0%
ACGTCGCGCTTTCTTGTTAC+CGG + chr4_1:53136858-53136877 None:intergenic 50.0%
AGACGAGTGAAAAACGGCCA+GGG + chr4_1:53136977-53136996 None:intergenic 50.0%
AAGACGAGTGAAAAACGGCC+AGG + chr4_1:53136978-53136997 None:intergenic 50.0%
GGAGTAGACCGTACATTCAC+CGG + chr4_1:53137046-53137065 None:intergenic 50.0%
GGATGAGAGATTATCCACGC+CGG + chr4_1:53137130-53137149 None:intergenic 50.0%
GGCGTGGATAATCTCTCATC+CGG - chr4_1:53137129-53137148 Msa0555270:CDS 50.0%
! CGTTTTTGTGTTCCGGATCG+GGG + chr4_1:53137160-53137179 None:intergenic 50.0%
! TGCCGGACGTTTTTGTGTTC+CGG + chr4_1:53137167-53137186 None:intergenic 50.0%
TCGTCTCTATTCGCCATTGC+CGG + chr4_1:53137184-53137203 None:intergenic 50.0%
ATCGTTCCGGCGGAATTTCT+CGG - chr4_1:53137207-53137226 Msa0555270:CDS 50.0%
TGTGGAGTCAGAGGAATGGA+GGG - chr4_1:53137270-53137289 Msa0555270:CDS 50.0%
GATGGGACCCATAAGGAGTT+TGG - chr4_1:53137313-53137332 Msa0555270:CDS 50.0%
TGGTGGAATTGGAGAAGCAG+AGG - chr4_1:53137413-53137432 Msa0555270:CDS 50.0%
GCAGAGGATGCAGTTTGTGA+AGG - chr4_1:53137429-53137448 Msa0555270:CDS 50.0%
TGGTTGCTTGCAGCAGAAGT+TGG - chr4_1:53137681-53137700 Msa0555270:five_prime_UTR 50.0%
GGTTGCTTGCAGCAGAAGTT+GGG - chr4_1:53137682-53137701 Msa0555270:five_prime_UTR 50.0%
!! ACGAGAGTCGTTTTACCGTG+CGG + chr4_1:53136536-53136555 None:intergenic 50.0%
!!! TTGAGTTTTTGGTCGGCGGA+CGG + chr4_1:53136581-53136600 None:intergenic 50.0%
!!! ACGGTTGAGTTTTTGGTCGG+CGG + chr4_1:53136585-53136604 None:intergenic 50.0%
!!! CGGACGGTTGAGTTTTTGGT+CGG + chr4_1:53136588-53136607 None:intergenic 50.0%
! TCGACGGACGGTTGAGTTTT+TGG + chr4_1:53136592-53136611 None:intergenic 50.0%
GCGATGATGTCCATGAAACG+CGG + chr4_1:53136632-53136651 None:intergenic 50.0%
CGTTTCATGGACATCATCGC+CGG - chr4_1:53136632-53136651 Msa0555270:intron 50.0%
!! GGAACGGAGTTGATAGGTGA+CGG + chr4_1:53136662-53136681 None:intergenic 50.0%
ACGTCGCGCTTTCTTGTTAC+CGG + chr4_1:53136858-53136877 None:intergenic 50.0%
AGACGAGTGAAAAACGGCCA+GGG + chr4_1:53136977-53136996 None:intergenic 50.0%
AAGACGAGTGAAAAACGGCC+AGG + chr4_1:53136978-53136997 None:intergenic 50.0%
GGAGTAGACCGTACATTCAC+CGG + chr4_1:53137046-53137065 None:intergenic 50.0%
GGATGAGAGATTATCCACGC+CGG + chr4_1:53137130-53137149 None:intergenic 50.0%
GGCGTGGATAATCTCTCATC+CGG - chr4_1:53137129-53137148 Msa0555270:CDS 50.0%
! CGTTTTTGTGTTCCGGATCG+GGG + chr4_1:53137160-53137179 None:intergenic 50.0%
! TGCCGGACGTTTTTGTGTTC+CGG + chr4_1:53137167-53137186 None:intergenic 50.0%
TCGTCTCTATTCGCCATTGC+CGG + chr4_1:53137184-53137203 None:intergenic 50.0%
ATCGTTCCGGCGGAATTTCT+CGG - chr4_1:53137207-53137226 Msa0555270:CDS 50.0%
TGTGGAGTCAGAGGAATGGA+GGG - chr4_1:53137270-53137289 Msa0555270:CDS 50.0%
GATGGGACCCATAAGGAGTT+TGG - chr4_1:53137313-53137332 Msa0555270:CDS 50.0%
TGGTGGAATTGGAGAAGCAG+AGG - chr4_1:53137413-53137432 Msa0555270:CDS 50.0%
GCAGAGGATGCAGTTTGTGA+AGG - chr4_1:53137429-53137448 Msa0555270:CDS 50.0%
TGGTTGCTTGCAGCAGAAGT+TGG - chr4_1:53137681-53137700 Msa0555270:five_prime_UTR 50.0%
GGTTGCTTGCAGCAGAAGTT+GGG - chr4_1:53137682-53137701 Msa0555270:five_prime_UTR 50.0%
! CAATGTGTTTTCCCCCCGCA+CGG - chr4_1:53136518-53136537 Msa0555270:CDS 55.0%
!! AGAGTCGTTTTACCGTGCGG+GGG + chr4_1:53136533-53136552 None:intergenic 55.0%
!! GAGAGTCGTTTTACCGTGCG+GGG + chr4_1:53136534-53136553 None:intergenic 55.0%
!! CGAGAGTCGTTTTACCGTGC+GGG + chr4_1:53136535-53136554 None:intergenic 55.0%
!! GTTGATAGGTGACGGAGCTC+CGG + chr4_1:53136654-53136673 None:intergenic 55.0%
GAGGGTGGAAGTTGCGTCTT+CGG + chr4_1:53136735-53136754 None:intergenic 55.0%
GACGAAGGTTACCGCGGTTA+AGG + chr4_1:53136787-53136806 None:intergenic 55.0%
TCGCGCTTTCTTGTTACCGG+CGG + chr4_1:53136855-53136874 None:intergenic 55.0%
GCTAGGGTTTCCGAATCCGA+CGG - chr4_1:53136938-53136957 Msa0555270:CDS 55.0%
TGAAAAACGGCCAGGGACTC+TGG + chr4_1:53136970-53136989 None:intergenic 55.0%
!!! GGCGGGGAGAGTTTTTTGAC+CGG + chr4_1:53137025-53137044 None:intergenic 55.0%
GGTCAAAAAACTCTCCCCGC+CGG - chr4_1:53137024-53137043 Msa0555270:CDS 55.0%
TAGACCGTACATTCACCGGC+GGG + chr4_1:53137042-53137061 None:intergenic 55.0%
GTAGACCGTACATTCACCGG+CGG + chr4_1:53137043-53137062 None:intergenic 55.0%
AGGAGGTGGACGTTTGACGA+CGG + chr4_1:53137071-53137090 None:intergenic 55.0%
GAAGGTGGAGATTGAGGAGG+TGG + chr4_1:53137085-53137104 None:intergenic 55.0%
GGAGAAGGTGGAGATTGAGG+AGG + chr4_1:53137088-53137107 None:intergenic 55.0%
GGTGGAGAAGGTGGAGATTG+AGG + chr4_1:53137091-53137110 None:intergenic 55.0%
TGAGAGATTATCCACGCCGG+AGG + chr4_1:53137127-53137146 None:intergenic 55.0%
! GGCAGAAAGTGTGGAGTCAG+AGG - chr4_1:53137261-53137280 Msa0555270:CDS 55.0%
GTGTGGAGTCAGAGGAATGG+AGG - chr4_1:53137269-53137288 Msa0555270:CDS 55.0%
GTGGAGTCAGAGGAATGGAG+GGG - chr4_1:53137271-53137290 Msa0555270:CDS 55.0%
TGGAGTCAGAGGAATGGAGG+GGG - chr4_1:53137272-53137291 Msa0555270:CDS 55.0%
GAGGAATGGAGGGGGAAGAA+AGG - chr4_1:53137280-53137299 Msa0555270:CDS 55.0%
TGGTTTCAGAGAGCTCGCTC+AGG - chr4_1:53137333-53137352 Msa0555270:CDS 55.0%
! CAATGTGTTTTCCCCCCGCA+CGG - chr4_1:53136518-53136537 Msa0555270:CDS 55.0%
!! AGAGTCGTTTTACCGTGCGG+GGG + chr4_1:53136533-53136552 None:intergenic 55.0%
!! GAGAGTCGTTTTACCGTGCG+GGG + chr4_1:53136534-53136553 None:intergenic 55.0%
!! CGAGAGTCGTTTTACCGTGC+GGG + chr4_1:53136535-53136554 None:intergenic 55.0%
!! GTTGATAGGTGACGGAGCTC+CGG + chr4_1:53136654-53136673 None:intergenic 55.0%
GAGGGTGGAAGTTGCGTCTT+CGG + chr4_1:53136735-53136754 None:intergenic 55.0%
GACGAAGGTTACCGCGGTTA+AGG + chr4_1:53136787-53136806 None:intergenic 55.0%
TCGCGCTTTCTTGTTACCGG+CGG + chr4_1:53136855-53136874 None:intergenic 55.0%
GCTAGGGTTTCCGAATCCGA+CGG - chr4_1:53136938-53136957 Msa0555270:CDS 55.0%
TGAAAAACGGCCAGGGACTC+TGG + chr4_1:53136970-53136989 None:intergenic 55.0%
!!! GGCGGGGAGAGTTTTTTGAC+CGG + chr4_1:53137025-53137044 None:intergenic 55.0%
GGTCAAAAAACTCTCCCCGC+CGG - chr4_1:53137024-53137043 Msa0555270:CDS 55.0%
TAGACCGTACATTCACCGGC+GGG + chr4_1:53137042-53137061 None:intergenic 55.0%
GTAGACCGTACATTCACCGG+CGG + chr4_1:53137043-53137062 None:intergenic 55.0%
AGGAGGTGGACGTTTGACGA+CGG + chr4_1:53137071-53137090 None:intergenic 55.0%
GAAGGTGGAGATTGAGGAGG+TGG + chr4_1:53137085-53137104 None:intergenic 55.0%
GGAGAAGGTGGAGATTGAGG+AGG + chr4_1:53137088-53137107 None:intergenic 55.0%
GGTGGAGAAGGTGGAGATTG+AGG + chr4_1:53137091-53137110 None:intergenic 55.0%
TGAGAGATTATCCACGCCGG+AGG + chr4_1:53137127-53137146 None:intergenic 55.0%
! GGCAGAAAGTGTGGAGTCAG+AGG - chr4_1:53137261-53137280 Msa0555270:CDS 55.0%
GTGTGGAGTCAGAGGAATGG+AGG - chr4_1:53137269-53137288 Msa0555270:CDS 55.0%
GTGGAGTCAGAGGAATGGAG+GGG - chr4_1:53137271-53137290 Msa0555270:CDS 55.0%
TGGAGTCAGAGGAATGGAGG+GGG - chr4_1:53137272-53137291 Msa0555270:CDS 55.0%
GAGGAATGGAGGGGGAAGAA+AGG - chr4_1:53137280-53137299 Msa0555270:CDS 55.0%
TGGTTTCAGAGAGCTCGCTC+AGG - chr4_1:53137333-53137352 Msa0555270:CDS 55.0%
!! GAGTCGTTTTACCGTGCGGG+GGG + chr4_1:53136532-53136551 None:intergenic 60.0%
!!! AGTTTTTGGTCGGCGGACGG+AGG + chr4_1:53136578-53136597 None:intergenic 60.0%
CTTCGGTCCAGCAGTCTTCG+CGG + chr4_1:53136718-53136737 None:intergenic 60.0%
TTCCACCCTCATCGACGCCT+GGG - chr4_1:53136745-53136764 Msa0555270:CDS 60.0%
!! TTCACCCCAGGCGTCGATGA+GGG + chr4_1:53136753-53136772 None:intergenic 60.0%
CGCTACCTCGACCTTAACCG+CGG - chr4_1:53136773-53136792 Msa0555270:CDS 60.0%
GGTTACCGCGGTTAAGGTCG+AGG + chr4_1:53136781-53136800 None:intergenic 60.0%
CTTTCTTGTTACCGGCGGCG+TGG + chr4_1:53136850-53136869 None:intergenic 60.0%
AGGGTTTCCGAATCCGACGG+CGG - chr4_1:53136941-53136960 Msa0555270:CDS 60.0%
CTGGTAACCGCCGTCGGATT+CGG + chr4_1:53136951-53136970 None:intergenic 60.0%
TCTCCCCGCCGGTGAATGTA+CGG - chr4_1:53137035-53137054 Msa0555270:CDS 60.0%
AGACCGTACATTCACCGGCG+GGG + chr4_1:53137041-53137060 None:intergenic 60.0%
GGTGGACGTTTGACGACGGT+TGG + chr4_1:53137067-53137086 None:intergenic 60.0%
ATTATCCACGCCGGAGGCGA+CGG + chr4_1:53137121-53137140 None:intergenic 60.0%
!! GAGACGAAGCATCGTTCCGG+CGG - chr4_1:53137197-53137216 Msa0555270:CDS 60.0%
CGAACGCCGAGAAATTCCGC+CGG + chr4_1:53137216-53137235 None:intergenic 60.0%
GCGGAATTTCTCGGCGTTCG+CGG - chr4_1:53137216-53137235 Msa0555270:CDS 60.0%
GAATTTCTCGGCGTTCGCGG+CGG - chr4_1:53137219-53137238 Msa0555270:CDS 60.0%
!! GAGTCGTTTTACCGTGCGGG+GGG + chr4_1:53136532-53136551 None:intergenic 60.0%
!!! AGTTTTTGGTCGGCGGACGG+AGG + chr4_1:53136578-53136597 None:intergenic 60.0%
CTTCGGTCCAGCAGTCTTCG+CGG + chr4_1:53136718-53136737 None:intergenic 60.0%
TTCCACCCTCATCGACGCCT+GGG - chr4_1:53136745-53136764 Msa0555270:CDS 60.0%
!! TTCACCCCAGGCGTCGATGA+GGG + chr4_1:53136753-53136772 None:intergenic 60.0%
CGCTACCTCGACCTTAACCG+CGG - chr4_1:53136773-53136792 Msa0555270:CDS 60.0%
GGTTACCGCGGTTAAGGTCG+AGG + chr4_1:53136781-53136800 None:intergenic 60.0%
CTTTCTTGTTACCGGCGGCG+TGG + chr4_1:53136850-53136869 None:intergenic 60.0%
AGGGTTTCCGAATCCGACGG+CGG - chr4_1:53136941-53136960 Msa0555270:CDS 60.0%
CTGGTAACCGCCGTCGGATT+CGG + chr4_1:53136951-53136970 None:intergenic 60.0%
TCTCCCCGCCGGTGAATGTA+CGG - chr4_1:53137035-53137054 Msa0555270:CDS 60.0%
AGACCGTACATTCACCGGCG+GGG + chr4_1:53137041-53137060 None:intergenic 60.0%
GGTGGACGTTTGACGACGGT+TGG + chr4_1:53137067-53137086 None:intergenic 60.0%
ATTATCCACGCCGGAGGCGA+CGG + chr4_1:53137121-53137140 None:intergenic 60.0%
!! GAGACGAAGCATCGTTCCGG+CGG - chr4_1:53137197-53137216 Msa0555270:CDS 60.0%
CGAACGCCGAGAAATTCCGC+CGG + chr4_1:53137216-53137235 None:intergenic 60.0%
GCGGAATTTCTCGGCGTTCG+CGG - chr4_1:53137216-53137235 Msa0555270:CDS 60.0%
GAATTTCTCGGCGTTCGCGG+CGG - chr4_1:53137219-53137238 Msa0555270:CDS 60.0%
! CGCGGCGGAACGGAGTTGAT+AGG + chr4_1:53136668-53136687 None:intergenic 65.0%
GATGACGACGGAAGACGCGG+CGG + chr4_1:53136683-53136702 None:intergenic 65.0%
GGCGATGACGACGGAAGACG+CGG + chr4_1:53136686-53136705 None:intergenic 65.0%
ACGGGGAACGGCGATGACGA+CGG + chr4_1:53136695-53136714 None:intergenic 65.0%
CAGTCTTCGCGGACGGGGAA+CGG + chr4_1:53136707-53136726 None:intergenic 65.0%
TCCAGCAGTCTTCGCGGACG+GGG + chr4_1:53136712-53136731 None:intergenic 65.0%
GTCCAGCAGTCTTCGCGGAC+GGG + chr4_1:53136713-53136732 None:intergenic 65.0%
GGTCCAGCAGTCTTCGCGGA+CGG + chr4_1:53136714-53136733 None:intergenic 65.0%
CTTCCACCCTCATCGACGCC+TGG - chr4_1:53136744-53136763 Msa0555270:CDS 65.0%
TCCACCCTCATCGACGCCTG+GGG - chr4_1:53136746-53136765 Msa0555270:CDS 65.0%
!! GTTCACCCCAGGCGTCGATG+AGG + chr4_1:53136754-53136773 None:intergenic 65.0%
GTCGAGGTAGCGTTCACCCC+AGG + chr4_1:53136765-53136784 None:intergenic 65.0%
GTGGACGTCGTTGACGGCGT+CGG + chr4_1:53136831-53136850 None:intergenic 65.0%
GGGACTCTGGTAACCGCCGT+CGG + chr4_1:53136957-53136976 None:intergenic 65.0%
ACGGCGGTTACCAGAGTCCC+TGG - chr4_1:53136957-53136976 Msa0555270:CDS 65.0%
GGTGGAGACGGTGGAGAAGG+TGG + chr4_1:53137100-53137119 None:intergenic 65.0%
GACGGTGGAGACGGTGGAGA+AGG + chr4_1:53137103-53137122 None:intergenic 65.0%
GGCGGCTGAGGCAGAAAGTG+TGG - chr4_1:53137252-53137271 Msa0555270:CDS 65.0%
! CGCGGCGGAACGGAGTTGAT+AGG + chr4_1:53136668-53136687 None:intergenic 65.0%
GATGACGACGGAAGACGCGG+CGG + chr4_1:53136683-53136702 None:intergenic 65.0%
GGCGATGACGACGGAAGACG+CGG + chr4_1:53136686-53136705 None:intergenic 65.0%
ACGGGGAACGGCGATGACGA+CGG + chr4_1:53136695-53136714 None:intergenic 65.0%
CAGTCTTCGCGGACGGGGAA+CGG + chr4_1:53136707-53136726 None:intergenic 65.0%
TCCAGCAGTCTTCGCGGACG+GGG + chr4_1:53136712-53136731 None:intergenic 65.0%
GTCCAGCAGTCTTCGCGGAC+GGG + chr4_1:53136713-53136732 None:intergenic 65.0%
GGTCCAGCAGTCTTCGCGGA+CGG + chr4_1:53136714-53136733 None:intergenic 65.0%
CTTCCACCCTCATCGACGCC+TGG - chr4_1:53136744-53136763 Msa0555270:CDS 65.0%
TCCACCCTCATCGACGCCTG+GGG - chr4_1:53136746-53136765 Msa0555270:CDS 65.0%
!! GTTCACCCCAGGCGTCGATG+AGG + chr4_1:53136754-53136773 None:intergenic 65.0%
GTCGAGGTAGCGTTCACCCC+AGG + chr4_1:53136765-53136784 None:intergenic 65.0%
GTGGACGTCGTTGACGGCGT+CGG + chr4_1:53136831-53136850 None:intergenic 65.0%
GGGACTCTGGTAACCGCCGT+CGG + chr4_1:53136957-53136976 None:intergenic 65.0%
ACGGCGGTTACCAGAGTCCC+TGG - chr4_1:53136957-53136976 Msa0555270:CDS 65.0%
GGTGGAGACGGTGGAGAAGG+TGG + chr4_1:53137100-53137119 None:intergenic 65.0%
GACGGTGGAGACGGTGGAGA+AGG + chr4_1:53137103-53137122 None:intergenic 65.0%
GGCGGCTGAGGCAGAAAGTG+TGG - chr4_1:53137252-53137271 Msa0555270:CDS 65.0%
TGGTCGGCGGACGGAGGCTA+AGG + chr4_1:53136572-53136591 None:intergenic 70.0%
CGACGGAAGACGCGGCGGAA+CGG + chr4_1:53136678-53136697 None:intergenic 70.0%
TCCCCGTCCGCGAAGACTGC+TGG - chr4_1:53136708-53136727 Msa0555270:intron 70.0%
!! ACCCCAGGCGTCGATGAGGG+TGG + chr4_1:53136750-53136769 None:intergenic 70.0%
GGCGGCGTGGACGTCGTTGA+CGG + chr4_1:53136837-53136856 None:intergenic 70.0%
GTCAACGACGTCCACGCCGC+CGG - chr4_1:53136836-53136855 Msa0555270:CDS 70.0%
ACCGTCTCCACCGTCGCCTC+CGG - chr4_1:53137108-53137127 Msa0555270:CDS 70.0%
CATCCGGTCGGTCCCCGATC+CGG - chr4_1:53137145-53137164 Msa0555270:CDS 70.0%
GTTCCGGATCGGGGACCGAC+CGG + chr4_1:53137151-53137170 None:intergenic 70.0%
TGGTCGGCGGACGGAGGCTA+AGG + chr4_1:53136572-53136591 None:intergenic 70.0%
CGACGGAAGACGCGGCGGAA+CGG + chr4_1:53136678-53136697 None:intergenic 70.0%
TCCCCGTCCGCGAAGACTGC+TGG - chr4_1:53136708-53136727 Msa0555270:intron 70.0%
!! ACCCCAGGCGTCGATGAGGG+TGG + chr4_1:53136750-53136769 None:intergenic 70.0%
GGCGGCGTGGACGTCGTTGA+CGG + chr4_1:53136837-53136856 None:intergenic 70.0%
GTCAACGACGTCCACGCCGC+CGG - chr4_1:53136836-53136855 Msa0555270:CDS 70.0%
ACCGTCTCCACCGTCGCCTC+CGG - chr4_1:53137108-53137127 Msa0555270:CDS 70.0%
CATCCGGTCGGTCCCCGATC+CGG - chr4_1:53137145-53137164 Msa0555270:CDS 70.0%
GTTCCGGATCGGGGACCGAC+CGG + chr4_1:53137151-53137170 None:intergenic 70.0%
GGAGGCGACGGTGGAGACGG+TGG + chr4_1:53137109-53137128 None:intergenic 75.0%
GCCGGAGGCGACGGTGGAGA+CGG + chr4_1:53137112-53137131 None:intergenic 75.0%
ATCCACGCCGGAGGCGACGG+TGG + chr4_1:53137118-53137137 None:intergenic 75.0%
GGAGGCGACGGTGGAGACGG+TGG + chr4_1:53137109-53137128 None:intergenic 75.0%
GCCGGAGGCGACGGTGGAGA+CGG + chr4_1:53137112-53137131 None:intergenic 75.0%
ATCCACGCCGGAGGCGACGG+TGG + chr4_1:53137118-53137137 None:intergenic 75.0%
! CTCCACCGTCGCCTCCGGCG+TGG - chr4_1:53137113-53137132 Msa0555270:CDS 80.0%
! GGCGTTCGCGGCGGCTGCTG+CGG - chr4_1:53137228-53137247 Msa0555270:CDS 80.0%
! GTTCGCGGCGGCTGCTGCGG+CGG - chr4_1:53137231-53137250 Msa0555270:CDS 80.0%
! CTCCACCGTCGCCTCCGGCG+TGG - chr4_1:53137113-53137132 Msa0555270:CDS 80.0%
! GGCGTTCGCGGCGGCTGCTG+CGG - chr4_1:53137228-53137247 Msa0555270:CDS 80.0%
! GTTCGCGGCGGCTGCTGCGG+CGG - chr4_1:53137231-53137250 Msa0555270:CDS 80.0%
! GGCTGCTGCGGCGGCGGCTG+AGG - chr4_1:53137240-53137259 Msa0555270:CDS 85.0%
! GGCTGCTGCGGCGGCGGCTG+AGG - chr4_1:53137240-53137259 Msa0555270:CDS 85.0%
! CGCGGCGGCTGCTGCGGCGG+CGG - chr4_1:53137234-53137253 Msa0555270:CDS 90.0%
! CGCGGCGGCTGCTGCGGCGG+CGG - chr4_1:53137234-53137253 Msa0555270:CDS 90.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53136514 53137734 53136514 ID=Msa0555270;Name=Msa0555270
chr4_1 mRNA 53136514 53137734 53136514 ID=Msa0555270-mRNA-1;Parent=Msa0555270;Name=Msa0555270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=124|0|0.5|0.5|1|1|2|0|313
chr4_1 exon 53136514 53136554 53136514 ID=Msa0555270-mRNA-1:exon:15436;Parent=Msa0555270-mRNA-1
chr4_1 exon 53136710 53137734 53136710 ID=Msa0555270-mRNA-1:exon:15435;Parent=Msa0555270-mRNA-1
chr4_1 five_prime_UTR 53137611 53137734 53137611 ID=Msa0555270-mRNA-1:five_prime_utr;Parent=Msa0555270-mRNA-1
chr4_1 CDS 53136710 53137610 53136710 ID=Msa0555270-mRNA-1:cds;Parent=Msa0555270-mRNA-1
chr4_1 CDS 53136514 53136554 53136514 ID=Msa0555270-mRNA-1:cds;Parent=Msa0555270-mRNA-1
Gene Sequence

>Msa0555270

ATGGACATCATCGCCGGAGCTCCGTCACCTATCAACTCCGTTCCGCCGCGTCTTCCGTCGTCATCGCCGTTCCCCGTCCGCGAAGACTGCTGGACCGAAGACGCAACTTCCACCCTCATCGACGCCTGGGGTGAACGCTACCTCGACCTTAACCGCGGTAACCTTCGTCAGAAAACTTGGCAAGAGGTTGCCGACGCCGTCAACGACGTCCACGCCGCCGGTAACAAGAAAGCGCGACGTACCGACGTTCAGTGCAAAAACCGAATCGACACGTTAAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCCGAATCCGACGGCGGTTACCAGAGTCCCTGGCCGTTTTTCACTCGTCTTGACGTTCTCATCGGCGATACTTTTCCGGTCAAAAAACTCTCCCCGCCGGTGAATGTACGGTCTACTCCAACCGTCGTCAAACGTCCACCTCCTCAATCTCCACCTTCTCCACCGTCTCCACCGTCGCCTCCGGCGTGGATAATCTCTCATCCGGTCGGTCCCCGATCCGGAACACAAAAACGTCCGGCAATGGCGAATAGAGACGAAGCATCGTTCCGGCGGAATTTCTCGGCGTTCGCGGCGGCTGCTGCGGCGGCGGCTGAGGCAGAAAGTGTGGAGTCAGAGGAATGGAGGGGGAAGAAAGGAAGAGAAAACGATGGGACCCATAAGGAGTTTGGTTTCAGAGAGCTCGCTCAGGCTATAGAGAGATTCAGTGAAGTATATGAAAGAGTTGAAGCTTCAAAACAGAGACAAATGGTGGAATTGGAGAAGCAGAGGATGCAGTTTGTGAAGGATTTGGAGTATCAGAGAATGCAGTTATACATGGAAACGCAGGTTCAGCTTCAGAAAATCAAACGCACTAAACGTGCTTCTGGTTCCGCAGAAGTTGGGTATTTTGTTACTTGTGATAATGGTAACTGA
Protein sequence

>Msa0555270

MDIIAGAPSPINSVPPRLPSSSPFPVREDCWTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVNDVHAAGNKKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYQSPWPFFTRLDVLIGDTFPVKKLSPPVNVRSTPTVVKRPPPQSPPSPPSPPSPPAWIISHPVGPRSGTQKRPAMANRDEASFRRNFSAFAAAAAAAAEAESVESEEWRGKKGRENDGTHKEFGFRELAQAIERFSEVYERVEASKQRQMVELEKQRMQFVKDLEYQRMQLYMETQVQLQKIKRTKRASGSAEVGYFVTCDNGN*