Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557100 | RHN62322.1 | 87.500 | 272 | 34 | 0 | 1 | 272 | 1 | 272 | 9.73e-160 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557100 | sp|Q9LVW4|MY118_ARATH | 51.961 | 102 | 38 | 2 | 178 | 272 | 143 | 240 | 4.72e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557100 | A0A396I9P2 | 87.500 | 272 | 34 | 0 | 1 | 272 | 1 | 272 | 4.65e-160 | 455 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0557100 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557100 | MtrunA17_Chr4g0046181 | 87.500 | 272 | 34 | 0 | 1 | 272 | 1 | 272 | 8.95e-164 | 455 |
| Msa0557100 | MtrunA17_Chr7g0233161 | 69.373 | 271 | 83 | 0 | 2 | 272 | 80 | 350 | 2.69e-130 | 373 |
| Msa0557100 | MtrunA17_Chr7g0228531 | 62.500 | 272 | 101 | 1 | 1 | 272 | 1 | 271 | 2.77e-114 | 335 |
| Msa0557100 | MtrunA17_Chr7g0228481 | 59.926 | 272 | 108 | 1 | 1 | 272 | 1 | 271 | 2.21e-108 | 320 |
| Msa0557100 | MtrunA17_Chr7g0228401 | 43.114 | 334 | 124 | 3 | 1 | 272 | 1 | 330 | 1.72e-76 | 241 |
| Msa0557100 | MtrunA17_Chr7g0233061 | 35.507 | 276 | 127 | 8 | 1 | 272 | 1 | 229 | 3.76e-36 | 132 |
| Msa0557100 | MtrunA17_Chr3g0117511 | 72.414 | 58 | 16 | 0 | 215 | 272 | 177 | 234 | 7.25e-23 | 97.1 |
| Msa0557100 | MtrunA17_Chr3g0104501 | 70.370 | 54 | 16 | 0 | 219 | 272 | 131 | 184 | 5.35e-22 | 90.9 |
| Msa0557100 | MtrunA17_Chr4g0058991 | 70.370 | 54 | 16 | 0 | 219 | 272 | 207 | 260 | 1.21e-21 | 93.6 |
| Msa0557100 | MtrunA17_Chr5g0429661 | 68.519 | 54 | 17 | 0 | 219 | 272 | 120 | 173 | 1.35e-21 | 92.8 |
| Msa0557100 | MtrunA17_Chr1g0157731 | 55.932 | 59 | 26 | 0 | 213 | 271 | 83 | 141 | 9.50e-19 | 85.9 |
| Msa0557100 | MtrunA17_Chr3g0139671 | 57.627 | 59 | 25 | 0 | 213 | 271 | 77 | 135 | 1.66e-18 | 85.1 |
| Msa0557100 | MtrunA17_Chr7g0238631 | 58.333 | 60 | 25 | 0 | 213 | 272 | 105 | 164 | 3.78e-18 | 84.0 |
| Msa0557100 | MtrunA17_Chr5g0397841 | 51.667 | 60 | 29 | 0 | 213 | 272 | 102 | 161 | 9.69e-16 | 76.6 |
| Msa0557100 | MtrunA17_Chr1g0177901 | 66.667 | 42 | 14 | 0 | 231 | 272 | 4 | 45 | 6.31e-14 | 68.9 |
| Msa0557100 | MtrunA17_Chr3g0133601 | 52.830 | 53 | 25 | 0 | 220 | 272 | 36 | 88 | 6.26e-13 | 66.6 |
| Msa0557100 | MtrunA17_Chr4g0008551 | 50.943 | 53 | 26 | 0 | 220 | 272 | 37 | 89 | 3.16e-12 | 65.9 |
| Msa0557100 | MtrunA17_Chr5g0401731 | 46.154 | 65 | 35 | 0 | 208 | 272 | 2 | 66 | 1.15e-11 | 63.9 |
| Msa0557100 | MtrunA17_Chr4g0053431 | 47.170 | 53 | 28 | 0 | 220 | 272 | 4 | 56 | 9.80e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557100 | AT3G27785.1 | 51.961 | 102 | 38 | 2 | 178 | 272 | 143 | 240 | 4.79e-25 | 103 |
| Msa0557100 | AT4G18770.1 | 72.414 | 58 | 16 | 0 | 215 | 272 | 211 | 268 | 1.69e-23 | 99.0 |
| Msa0557100 | AT5G58850.1 | 60.938 | 64 | 25 | 0 | 209 | 272 | 93 | 156 | 9.08e-21 | 91.3 |
| Msa0557100 | AT5G11050.1 | 69.091 | 55 | 17 | 0 | 218 | 272 | 102 | 156 | 9.69e-21 | 91.3 |
| Msa0557100 | AT5G11510.3 | 54.237 | 59 | 27 | 0 | 213 | 271 | 73 | 131 | 1.36e-17 | 82.8 |
| Msa0557100 | AT5G11510.1 | 54.237 | 59 | 27 | 0 | 213 | 271 | 73 | 131 | 1.36e-17 | 82.8 |
| Msa0557100 | AT5G11510.4 | 54.237 | 59 | 27 | 0 | 213 | 271 | 73 | 131 | 1.36e-17 | 82.8 |
| Msa0557100 | AT3G09370.1 | 57.627 | 59 | 25 | 0 | 213 | 271 | 122 | 180 | 1.64e-17 | 82.4 |
| Msa0557100 | AT3G09370.2 | 57.627 | 59 | 25 | 0 | 213 | 271 | 127 | 185 | 1.72e-17 | 82.4 |
| Msa0557100 | AT5G11510.2 | 54.237 | 59 | 27 | 0 | 213 | 271 | 73 | 131 | 2.00e-17 | 82.4 |
| Msa0557100 | AT3G09370.3 | 57.627 | 59 | 25 | 0 | 213 | 271 | 135 | 193 | 2.24e-17 | 82.0 |
| Msa0557100 | AT5G11510.5 | 54.237 | 59 | 27 | 0 | 213 | 271 | 73 | 131 | 2.25e-17 | 82.0 |
| Msa0557100 | AT5G02320.1 | 55.000 | 60 | 27 | 0 | 213 | 272 | 119 | 178 | 1.19e-16 | 79.7 |
| Msa0557100 | AT5G02320.2 | 55.000 | 60 | 27 | 0 | 213 | 272 | 119 | 178 | 1.19e-16 | 79.7 |
| Msa0557100 | AT5G40360.1 | 59.322 | 59 | 23 | 1 | 215 | 272 | 151 | 209 | 1.36e-16 | 79.0 |
| Msa0557100 | AT4G32730.5 | 50.847 | 59 | 29 | 0 | 213 | 271 | 79 | 137 | 1.47e-16 | 79.7 |
| Msa0557100 | AT4G32730.4 | 50.847 | 59 | 29 | 0 | 213 | 271 | 79 | 137 | 1.47e-16 | 79.7 |
| Msa0557100 | AT4G32730.3 | 50.847 | 59 | 29 | 0 | 213 | 271 | 79 | 137 | 1.47e-16 | 79.7 |
| Msa0557100 | AT4G32730.2 | 50.847 | 59 | 29 | 0 | 213 | 271 | 79 | 137 | 1.47e-16 | 79.7 |
| Msa0557100 | AT4G32730.1 | 50.847 | 59 | 29 | 0 | 213 | 271 | 79 | 137 | 1.91e-16 | 79.3 |
| Msa0557100 | AT5G02320.3 | 55.000 | 60 | 27 | 0 | 213 | 272 | 59 | 118 | 2.23e-16 | 79.0 |
| Msa0557100 | AT4G00540.2 | 44.872 | 78 | 39 | 2 | 198 | 271 | 79 | 156 | 4.22e-14 | 72.0 |
| Msa0557100 | AT4G00540.1 | 44.872 | 78 | 39 | 2 | 198 | 271 | 77 | 154 | 6.67e-14 | 71.6 |
| Msa0557100 | AT5G40430.1 | 49.153 | 59 | 29 | 1 | 214 | 272 | 47 | 104 | 3.57e-12 | 65.1 |
| Msa0557100 | AT2G25230.1 | 49.153 | 59 | 30 | 0 | 214 | 272 | 19 | 77 | 3.32e-11 | 62.0 |
| Msa0557100 | AT3G11440.2 | 35.632 | 87 | 55 | 1 | 187 | 272 | 9 | 95 | 6.65e-11 | 62.8 |
| Msa0557100 | AT3G11440.3 | 35.632 | 87 | 55 | 1 | 187 | 272 | 9 | 95 | 6.66e-11 | 62.8 |
| Msa0557100 | AT3G11440.4 | 35.632 | 87 | 55 | 1 | 187 | 272 | 9 | 95 | 6.66e-11 | 62.8 |
| Msa0557100 | AT3G11440.1 | 35.632 | 87 | 55 | 1 | 187 | 272 | 9 | 95 | 6.66e-11 | 62.8 |
Find 83 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCATTGCAATCGATTTA+AGG | 0.126451 | 4_1:-55393538 | Msa0557100:CDS |
| CTTTCATGTGCTTCGCAATC+TGG | 0.148451 | 4_1:+55392758 | None:intergenic |
| TAAATCGATTGCAATGATTT+TGG | 0.193952 | 4_1:+55393541 | None:intergenic |
| CCATTGACCCTTGATTATAT+TGG | 0.221364 | 4_1:+55393047 | None:intergenic |
| CATTGACCCTTGATTATATT+GGG | 0.267345 | 4_1:+55393048 | None:intergenic |
| TTCAATTGGTGAATCACTTT+GGG | 0.274000 | 4_1:-55392795 | Msa0557100:CDS |
| AGTGGTGGTTAGCCTTGTTC+AGG | 0.290548 | 4_1:+55393508 | None:intergenic |
| CCATCTTCGTCCGGACATTA+AGG | 0.308704 | 4_1:-55392698 | None:intergenic |
| GCTCGAAATCCAATGATCTT+TGG | 0.313622 | 4_1:-55393378 | Msa0557100:CDS |
| TAGGAAGGGGTTTGGATCAT+AGG | 0.325274 | 4_1:+55393444 | None:intergenic |
| ATCACTTTGGGCTTAGAAAA+TGG | 0.360055 | 4_1:-55392783 | Msa0557100:CDS |
| TTGTAGGGTTCTTGTTCAAT+TGG | 0.374968 | 4_1:-55392809 | Msa0557100:intron |
| CTCGAAATCCAATGATCTTT+GGG | 0.385296 | 4_1:-55393377 | Msa0557100:CDS |
| GTTCAATTGGTGAATCACTT+TGG | 0.387935 | 4_1:-55392796 | Msa0557100:CDS |
| CTTTCATGCAATGGTGGAAC+TGG | 0.388962 | 4_1:-55393165 | Msa0557100:CDS |
| CAGCCTTGTAGGAAGGGGTT+TGG | 0.390076 | 4_1:+55393436 | None:intergenic |
| TGGGCCAAACTATAACAAAA+TGG | 0.396721 | 4_1:-55393358 | Msa0557100:CDS |
| TAGTTTGGCCCAAAGATCAT+TGG | 0.415096 | 4_1:+55393369 | None:intergenic |
| TTTCATGTGCTTCGCAATCT+GGG | 0.428385 | 4_1:+55392759 | None:intergenic |
| CAATTCCCGAGAAAATAATC+AGG | 0.429876 | 4_1:-55393139 | Msa0557100:CDS |
| AAGCACATGAAAGGCAGGAT+TGG | 0.441511 | 4_1:-55392748 | Msa0557100:CDS |
| ATTGGTGTACACAGCCTTGT+AGG | 0.450738 | 4_1:+55393425 | None:intergenic |
| GGGGTTTGGATCATAGGAAA+TGG | 0.453403 | 4_1:+55393450 | None:intergenic |
| GTGGTGGTTAGCCTTGTTCA+GGG | 0.453612 | 4_1:+55393509 | None:intergenic |
| CCAATATAATCAAGGGTCAA+TGG | 0.453640 | 4_1:-55393047 | Msa0557100:CDS |
| AGCACATGAAAGGCAGGATT+GGG | 0.455222 | 4_1:-55392747 | Msa0557100:CDS |
| TGGTGAAACTTCACAATCTC+GGG | 0.465903 | 4_1:-55393265 | Msa0557100:CDS |
| CAAGGATCCCAATATAATCA+AGG | 0.472343 | 4_1:-55393055 | Msa0557100:CDS |
| AAATTCACCTTGGGATCCAT+TGG | 0.473505 | 4_1:+55393407 | None:intergenic |
| AGCACTGATAAATTCACCTT+GGG | 0.477960 | 4_1:+55393398 | None:intergenic |
| AAAATCTCCTTACCTTTCTA+GGG | 0.486296 | 4_1:-55393670 | Msa0557100:CDS |
| TCAGTTAAGTCTGAGCTTCA+AGG | 0.495082 | 4_1:-55393192 | Msa0557100:CDS |
| GTTCCTTTGCTAGAGTCAAC+GGG | 0.495391 | 4_1:+55393321 | None:intergenic |
| ATGGTGAAACTTCACAATCT+CGG | 0.496533 | 4_1:-55393266 | Msa0557100:CDS |
| GGTTGAGAAGGAACCATTGT+GGG | 0.502818 | 4_1:+55393612 | None:intergenic |
| TTGACTCTAGCAAAGGAACT+CGG | 0.516700 | 4_1:-55393317 | Msa0557100:CDS |
| TCACAATCACTAGTTTATGA+TGG | 0.525129 | 4_1:-55393228 | Msa0557100:CDS |
| TTGCGAAGCACATGAAAGGC+AGG | 0.529735 | 4_1:-55392753 | Msa0557100:CDS |
| AAGAATGTCACCTTAATGTC+CGG | 0.531823 | 4_1:+55392688 | None:intergenic |
| CAAGGCGGTCTTTCATGCAA+TGG | 0.535924 | 4_1:-55393174 | Msa0557100:CDS |
| TGTACACAGCCTTGTAGGAA+GGG | 0.539830 | 4_1:+55393430 | None:intergenic |
| GATCCAAACCCCTTCCTACA+AGG | 0.542810 | 4_1:-55393439 | Msa0557100:CDS |
| GGAAACAGTGTAGAGAGAGA+TGG | 0.544190 | 4_1:-55392726 | Msa0557100:CDS |
| ATGGAATAACCATCTTCGTC+CGG | 0.546557 | 4_1:-55392707 | Msa0557100:CDS |
| GGAAGATCCCTAGAAAGGTA+AGG | 0.551617 | 4_1:+55393663 | None:intergenic |
| GGGTCAATGGACTGCAAATG+AGG | 0.554129 | 4_1:-55393034 | Msa0557100:CDS |
| AGTTCCTTTGCTAGAGTCAA+CGG | 0.557352 | 4_1:+55393320 | None:intergenic |
| CCTTAATGTCCGGACGAAGA+TGG | 0.558157 | 4_1:+55392698 | None:intergenic |
| GGGTTTGGATCATAGGAAAT+GGG | 0.558920 | 4_1:+55393451 | None:intergenic |
| ATAGTTGGACCTGGTTGAGA+AGG | 0.560816 | 4_1:+55393600 | None:intergenic |
| CAGATTGCGAAGCACATGAA+AGG | 0.561261 | 4_1:-55392757 | Msa0557100:CDS |
| GTGTACACAGCCTTGTAGGA+AGG | 0.562152 | 4_1:+55393429 | None:intergenic |
| GATCATAGGAAATGGGCTGA+TGG | 0.564209 | 4_1:+55393458 | None:intergenic |
| TACAAGGCTGTGTACACCAA+TGG | 0.564934 | 4_1:-55393423 | Msa0557100:CDS |
| TGACTCTAGCAAAGGAACTC+GGG | 0.568735 | 4_1:-55393316 | Msa0557100:CDS |
| TAATAGTGAAATTCGACTCA+AGG | 0.569410 | 4_1:-55393073 | Msa0557100:CDS |
| GAGCACTGATAAATTCACCT+TGG | 0.570067 | 4_1:+55393397 | None:intergenic |
| AACTAGTGATTGTGATAGAG+AGG | 0.577417 | 4_1:+55393236 | None:intergenic |
| GTACACAGCCTTGTAGGAAG+GGG | 0.579540 | 4_1:+55393431 | None:intergenic |
| AATGGACTGCAAATGAGGAT+AGG | 0.588058 | 4_1:-55393029 | Msa0557100:intron |
| GGAAATGGGCTGATGGAGGA+AGG | 0.588206 | 4_1:+55393465 | None:intergenic |
| GATGGTGGAGGTGAAATAGT+TGG | 0.591461 | 4_1:+55393585 | None:intergenic |
| AAGGATCCCAATATAATCAA+GGG | 0.598168 | 4_1:-55393054 | Msa0557100:CDS |
| AACAAAATGGAAGTCATGCA+CGG | 0.599473 | 4_1:-55393345 | Msa0557100:CDS |
| GGCGGTCTTTCATGCAATGG+TGG | 0.602262 | 4_1:-55393171 | Msa0557100:CDS |
| GTGTACACCAATGGATCCCA+AGG | 0.604908 | 4_1:-55393414 | Msa0557100:CDS |
| TGGTGGTTAGCCTTGTTCAG+GGG | 0.606939 | 4_1:+55393510 | None:intergenic |
| AATTCCCGAGAAAATAATCA+GGG | 0.610827 | 4_1:-55393138 | Msa0557100:CDS |
| ACAATGGTTCCTTCTCAACC+AGG | 0.612990 | 4_1:-55393609 | Msa0557100:CDS |
| TAAGGAACATCCCCTGAACA+AGG | 0.623246 | 4_1:-55393520 | Msa0557100:CDS |
| CATAGGAAATGGGCTGATGG+AGG | 0.624974 | 4_1:+55393461 | None:intergenic |
| ACTAGTGATTGTGATAGAGA+GGG | 0.643028 | 4_1:+55393237 | None:intergenic |
| TCAGACTTAACTGACACAGA+TGG | 0.647247 | 4_1:+55393201 | None:intergenic |
| TATGTAGTGCAATGTGATGG+TGG | 0.651219 | 4_1:+55393570 | None:intergenic |
| GGAGGTGAAATAGTTGGACC+TGG | 0.663191 | 4_1:+55393591 | None:intergenic |
| AAAATCAGCGATCCCCACAA+TGG | 0.664196 | 4_1:-55393625 | Msa0557100:CDS |
| GGTCCCGTTGACTCTAGCAA+AGG | 0.669487 | 4_1:-55393324 | Msa0557100:CDS |
| AGATATGTAGTGCAATGTGA+TGG | 0.672654 | 4_1:+55393567 | None:intergenic |
| TGGTTGAGAAGGAACCATTG+TGG | 0.674386 | 4_1:+55393611 | None:intergenic |
| GTAGTGCAATGTGATGGTGG+AGG | 0.679229 | 4_1:+55393573 | None:intergenic |
| GTTGAGAAGGAACCATTGTG+GGG | 0.697326 | 4_1:+55393613 | None:intergenic |
| ATTCCCGAGAAAATAATCAG+GGG | 0.737411 | 4_1:-55393137 | Msa0557100:CDS |
| GTTAAGTCTGAGCTTCAAGG+CGG | 0.740497 | 4_1:-55393189 | Msa0557100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTTTATGGAAGGATTTTT+AGG | + | chr4_1:55392756-55392775 | None:intergenic | 25.0% |
| !! | TAAATCGATTGCAATGATTT+TGG | + | chr4_1:55392857-55392876 | None:intergenic | 25.0% |
| !! | AAATCATTGCAATCGATTTA+AGG | - | chr4_1:55392857-55392876 | Msa0557100:intron | 25.0% |
| !!! | ACTTCCATTTTGTTATAGTT+TGG | + | chr4_1:55393044-55393063 | None:intergenic | 25.0% |
| ! | GCAAAAAATCTCTTTCAATA+TGG | - | chr4_1:55393110-55393129 | Msa0557100:CDS | 25.0% |
| !!! | GAATAATATTTTGGCGATTT+TGG | + | chr4_1:55393298-55393317 | None:intergenic | 25.0% |
| ! | AAACTATGAAAACATCATGT+AGG | + | chr4_1:55393426-55393445 | None:intergenic | 25.0% |
| !! | GATTTTATGGAAGGATTTTT+AGG | + | chr4_1:55392756-55392775 | None:intergenic | 25.0% |
| !! | TAAATCGATTGCAATGATTT+TGG | + | chr4_1:55392857-55392876 | None:intergenic | 25.0% |
| !! | AAATCATTGCAATCGATTTA+AGG | - | chr4_1:55392857-55392876 | Msa0557100:intron | 25.0% |
| !!! | ACTTCCATTTTGTTATAGTT+TGG | + | chr4_1:55393044-55393063 | None:intergenic | 25.0% |
| ! | GCAAAAAATCTCTTTCAATA+TGG | - | chr4_1:55393110-55393129 | Msa0557100:CDS | 25.0% |
| !!! | GAATAATATTTTGGCGATTT+TGG | + | chr4_1:55393298-55393317 | None:intergenic | 25.0% |
| ! | AAACTATGAAAACATCATGT+AGG | + | chr4_1:55393426-55393445 | None:intergenic | 25.0% |
| AAAAATCTCCTTACCTTTCT+AGG | - | chr4_1:55392724-55392743 | Msa0557100:CDS | 30.0% | |
| AAAATCTCCTTACCTTTCTA+GGG | - | chr4_1:55392725-55392744 | Msa0557100:CDS | 30.0% | |
| ! | TCACAATCACTAGTTTATGA+TGG | - | chr4_1:55393167-55393186 | Msa0557100:CDS | 30.0% |
| AATTCCCGAGAAAATAATCA+GGG | - | chr4_1:55393257-55393276 | Msa0557100:CDS | 30.0% | |
| TAATAGTGAAATTCGACTCA+AGG | - | chr4_1:55393322-55393341 | Msa0557100:CDS | 30.0% | |
| AAGGATCCCAATATAATCAA+GGG | - | chr4_1:55393341-55393360 | Msa0557100:CDS | 30.0% | |
| CATTGACCCTTGATTATATT+GGG | + | chr4_1:55393350-55393369 | None:intergenic | 30.0% | |
| TTCAATTGGTGAATCACTTT+GGG | - | chr4_1:55393600-55393619 | Msa0557100:CDS | 30.0% | |
| AAAAATCTCCTTACCTTTCT+AGG | - | chr4_1:55392724-55392743 | Msa0557100:CDS | 30.0% | |
| AAAATCTCCTTACCTTTCTA+GGG | - | chr4_1:55392725-55392744 | Msa0557100:CDS | 30.0% | |
| ! | TCACAATCACTAGTTTATGA+TGG | - | chr4_1:55393167-55393186 | Msa0557100:CDS | 30.0% |
| AATTCCCGAGAAAATAATCA+GGG | - | chr4_1:55393257-55393276 | Msa0557100:CDS | 30.0% | |
| TAATAGTGAAATTCGACTCA+AGG | - | chr4_1:55393322-55393341 | Msa0557100:CDS | 30.0% | |
| AAGGATCCCAATATAATCAA+GGG | - | chr4_1:55393341-55393360 | Msa0557100:CDS | 30.0% | |
| CATTGACCCTTGATTATATT+GGG | + | chr4_1:55393350-55393369 | None:intergenic | 30.0% | |
| TTCAATTGGTGAATCACTTT+GGG | - | chr4_1:55393600-55393619 | Msa0557100:CDS | 30.0% | |
| !! | TTTTAGGAAGATCCCTAGAA+AGG | + | chr4_1:55392740-55392759 | None:intergenic | 35.0% |
| AGATATGTAGTGCAATGTGA+TGG | + | chr4_1:55392831-55392850 | None:intergenic | 35.0% | |
| !! | AGCACTGATAAATTCACCTT+GGG | + | chr4_1:55393000-55393019 | None:intergenic | 35.0% |
| CTCGAAATCCAATGATCTTT+GGG | - | chr4_1:55393018-55393037 | Msa0557100:intron | 35.0% | |
| TGGGCCAAACTATAACAAAA+TGG | - | chr4_1:55393037-55393056 | Msa0557100:CDS | 35.0% | |
| AACAAAATGGAAGTCATGCA+CGG | - | chr4_1:55393050-55393069 | Msa0557100:CDS | 35.0% | |
| ATGGTGAAACTTCACAATCT+CGG | - | chr4_1:55393129-55393148 | Msa0557100:CDS | 35.0% | |
| ACTAGTGATTGTGATAGAGA+GGG | + | chr4_1:55393161-55393180 | None:intergenic | 35.0% | |
| AACTAGTGATTGTGATAGAG+AGG | + | chr4_1:55393162-55393181 | None:intergenic | 35.0% | |
| CAATTCCCGAGAAAATAATC+AGG | - | chr4_1:55393256-55393275 | Msa0557100:CDS | 35.0% | |
| ATTCCCGAGAAAATAATCAG+GGG | - | chr4_1:55393258-55393277 | Msa0557100:CDS | 35.0% | |
| CAAGGATCCCAATATAATCA+AGG | - | chr4_1:55393340-55393359 | Msa0557100:CDS | 35.0% | |
| CCATTGACCCTTGATTATAT+TGG | + | chr4_1:55393351-55393370 | None:intergenic | 35.0% | |
| CCAATATAATCAAGGGTCAA+TGG | - | chr4_1:55393348-55393367 | Msa0557100:CDS | 35.0% | |
| TTGTAGGGTTCTTGTTCAAT+TGG | - | chr4_1:55393586-55393605 | Msa0557100:CDS | 35.0% | |
| GTTCAATTGGTGAATCACTT+TGG | - | chr4_1:55393599-55393618 | Msa0557100:CDS | 35.0% | |
| ATCACTTTGGGCTTAGAAAA+TGG | - | chr4_1:55393612-55393631 | Msa0557100:CDS | 35.0% | |
| !! | TTTTAGGAAGATCCCTAGAA+AGG | + | chr4_1:55392740-55392759 | None:intergenic | 35.0% |
| AGATATGTAGTGCAATGTGA+TGG | + | chr4_1:55392831-55392850 | None:intergenic | 35.0% | |
| !! | AGCACTGATAAATTCACCTT+GGG | + | chr4_1:55393000-55393019 | None:intergenic | 35.0% |
| CTCGAAATCCAATGATCTTT+GGG | - | chr4_1:55393018-55393037 | Msa0557100:intron | 35.0% | |
| TGGGCCAAACTATAACAAAA+TGG | - | chr4_1:55393037-55393056 | Msa0557100:CDS | 35.0% | |
| AACAAAATGGAAGTCATGCA+CGG | - | chr4_1:55393050-55393069 | Msa0557100:CDS | 35.0% | |
| ATGGTGAAACTTCACAATCT+CGG | - | chr4_1:55393129-55393148 | Msa0557100:CDS | 35.0% | |
| ACTAGTGATTGTGATAGAGA+GGG | + | chr4_1:55393161-55393180 | None:intergenic | 35.0% | |
| AACTAGTGATTGTGATAGAG+AGG | + | chr4_1:55393162-55393181 | None:intergenic | 35.0% | |
| CAATTCCCGAGAAAATAATC+AGG | - | chr4_1:55393256-55393275 | Msa0557100:CDS | 35.0% | |
| ATTCCCGAGAAAATAATCAG+GGG | - | chr4_1:55393258-55393277 | Msa0557100:CDS | 35.0% | |
| CAAGGATCCCAATATAATCA+AGG | - | chr4_1:55393340-55393359 | Msa0557100:CDS | 35.0% | |
| CCATTGACCCTTGATTATAT+TGG | + | chr4_1:55393351-55393370 | None:intergenic | 35.0% | |
| CCAATATAATCAAGGGTCAA+TGG | - | chr4_1:55393348-55393367 | Msa0557100:CDS | 35.0% | |
| TTGTAGGGTTCTTGTTCAAT+TGG | - | chr4_1:55393586-55393605 | Msa0557100:CDS | 35.0% | |
| GTTCAATTGGTGAATCACTT+TGG | - | chr4_1:55393599-55393618 | Msa0557100:CDS | 35.0% | |
| ATCACTTTGGGCTTAGAAAA+TGG | - | chr4_1:55393612-55393631 | Msa0557100:CDS | 35.0% | |
| TATGTAGTGCAATGTGATGG+TGG | + | chr4_1:55392828-55392847 | None:intergenic | 40.0% | |
| ! | CTCTAGAAAAACTAGAGTGG+TGG | + | chr4_1:55392905-55392924 | None:intergenic | 40.0% |
| ! | CCACTCTAGAAAAACTAGAG+TGG | + | chr4_1:55392908-55392927 | None:intergenic | 40.0% |
| !!! | CCACTCTAGTTTTTCTAGAG+TGG | - | chr4_1:55392905-55392924 | Msa0557100:intron | 40.0% |
| GGGTTTGGATCATAGGAAAT+GGG | + | chr4_1:55392947-55392966 | None:intergenic | 40.0% | |
| AAATTCACCTTGGGATCCAT+TGG | + | chr4_1:55392991-55393010 | None:intergenic | 40.0% | |
| !! | GAGCACTGATAAATTCACCT+TGG | + | chr4_1:55393001-55393020 | None:intergenic | 40.0% |
| GCTCGAAATCCAATGATCTT+TGG | - | chr4_1:55393017-55393036 | Msa0557100:intron | 40.0% | |
| TAGTTTGGCCCAAAGATCAT+TGG | + | chr4_1:55393029-55393048 | None:intergenic | 40.0% | |
| AGTTCCTTTGCTAGAGTCAA+CGG | + | chr4_1:55393078-55393097 | None:intergenic | 40.0% | |
| TTGACTCTAGCAAAGGAACT+CGG | - | chr4_1:55393078-55393097 | Msa0557100:CDS | 40.0% | |
| TGGTGAAACTTCACAATCTC+GGG | - | chr4_1:55393130-55393149 | Msa0557100:CDS | 40.0% | |
| TCAGACTTAACTGACACAGA+TGG | + | chr4_1:55393197-55393216 | None:intergenic | 40.0% | |
| TCAGTTAAGTCTGAGCTTCA+AGG | - | chr4_1:55393203-55393222 | Msa0557100:CDS | 40.0% | |
| ! | ATGCCCCTGATTATTTTCTC+GGG | + | chr4_1:55393264-55393283 | None:intergenic | 40.0% |
| ! | CATGCCCCTGATTATTTTCT+CGG | + | chr4_1:55393265-55393284 | None:intergenic | 40.0% |
| !! | AATGGACTGCAAATGAGGAT+AGG | - | chr4_1:55393366-55393385 | Msa0557100:CDS | 40.0% |
| TTTCATGTGCTTCGCAATCT+GGG | + | chr4_1:55393639-55393658 | None:intergenic | 40.0% | |
| ATGGAATAACCATCTTCGTC+CGG | - | chr4_1:55393688-55393707 | Msa0557100:CDS | 40.0% | |
| TATGTAGTGCAATGTGATGG+TGG | + | chr4_1:55392828-55392847 | None:intergenic | 40.0% | |
| ! | CTCTAGAAAAACTAGAGTGG+TGG | + | chr4_1:55392905-55392924 | None:intergenic | 40.0% |
| ! | CCACTCTAGAAAAACTAGAG+TGG | + | chr4_1:55392908-55392927 | None:intergenic | 40.0% |
| !!! | CCACTCTAGTTTTTCTAGAG+TGG | - | chr4_1:55392905-55392924 | Msa0557100:intron | 40.0% |
| GGGTTTGGATCATAGGAAAT+GGG | + | chr4_1:55392947-55392966 | None:intergenic | 40.0% | |
| AAATTCACCTTGGGATCCAT+TGG | + | chr4_1:55392991-55393010 | None:intergenic | 40.0% | |
| !! | GAGCACTGATAAATTCACCT+TGG | + | chr4_1:55393001-55393020 | None:intergenic | 40.0% |
| GCTCGAAATCCAATGATCTT+TGG | - | chr4_1:55393017-55393036 | Msa0557100:intron | 40.0% | |
| TAGTTTGGCCCAAAGATCAT+TGG | + | chr4_1:55393029-55393048 | None:intergenic | 40.0% | |
| AGTTCCTTTGCTAGAGTCAA+CGG | + | chr4_1:55393078-55393097 | None:intergenic | 40.0% | |
| TTGACTCTAGCAAAGGAACT+CGG | - | chr4_1:55393078-55393097 | Msa0557100:CDS | 40.0% | |
| TGGTGAAACTTCACAATCTC+GGG | - | chr4_1:55393130-55393149 | Msa0557100:CDS | 40.0% | |
| TCAGACTTAACTGACACAGA+TGG | + | chr4_1:55393197-55393216 | None:intergenic | 40.0% | |
| TCAGTTAAGTCTGAGCTTCA+AGG | - | chr4_1:55393203-55393222 | Msa0557100:CDS | 40.0% | |
| ! | ATGCCCCTGATTATTTTCTC+GGG | + | chr4_1:55393264-55393283 | None:intergenic | 40.0% |
| ! | CATGCCCCTGATTATTTTCT+CGG | + | chr4_1:55393265-55393284 | None:intergenic | 40.0% |
| !! | AATGGACTGCAAATGAGGAT+AGG | - | chr4_1:55393366-55393385 | Msa0557100:CDS | 40.0% |
| TTTCATGTGCTTCGCAATCT+GGG | + | chr4_1:55393639-55393658 | None:intergenic | 40.0% | |
| ATGGAATAACCATCTTCGTC+CGG | - | chr4_1:55393688-55393707 | Msa0557100:CDS | 40.0% | |
| GGAAGATCCCTAGAAAGGTA+AGG | + | chr4_1:55392735-55392754 | None:intergenic | 45.0% | |
| !!! | GGGATCGCTGATTTTATGGA+AGG | + | chr4_1:55392765-55392784 | None:intergenic | 45.0% |
| !!! | TGTGGGGATCGCTGATTTTA+TGG | + | chr4_1:55392769-55392788 | None:intergenic | 45.0% |
| AAAATCAGCGATCCCCACAA+TGG | - | chr4_1:55392770-55392789 | Msa0557100:CDS | 45.0% | |
| GTTGAGAAGGAACCATTGTG+GGG | + | chr4_1:55392785-55392804 | None:intergenic | 45.0% | |
| GGTTGAGAAGGAACCATTGT+GGG | + | chr4_1:55392786-55392805 | None:intergenic | 45.0% | |
| TGGTTGAGAAGGAACCATTG+TGG | + | chr4_1:55392787-55392806 | None:intergenic | 45.0% | |
| ACAATGGTTCCTTCTCAACC+AGG | - | chr4_1:55392786-55392805 | Msa0557100:CDS | 45.0% | |
| ATAGTTGGACCTGGTTGAGA+AGG | + | chr4_1:55392798-55392817 | None:intergenic | 45.0% | |
| !! | GATGGTGGAGGTGAAATAGT+TGG | + | chr4_1:55392813-55392832 | None:intergenic | 45.0% |
| TAAGGAACATCCCCTGAACA+AGG | - | chr4_1:55392875-55392894 | Msa0557100:intron | 45.0% | |
| !! | GATCATAGGAAATGGGCTGA+TGG | + | chr4_1:55392940-55392959 | None:intergenic | 45.0% |
| GGGGTTTGGATCATAGGAAA+TGG | + | chr4_1:55392948-55392967 | None:intergenic | 45.0% | |
| TAGGAAGGGGTTTGGATCAT+AGG | + | chr4_1:55392954-55392973 | None:intergenic | 45.0% | |
| ! | TGTACACAGCCTTGTAGGAA+GGG | + | chr4_1:55392968-55392987 | None:intergenic | 45.0% |
| ! | ATTGGTGTACACAGCCTTGT+AGG | + | chr4_1:55392973-55392992 | None:intergenic | 45.0% |
| TACAAGGCTGTGTACACCAA+TGG | - | chr4_1:55392972-55392991 | Msa0557100:intron | 45.0% | |
| GTTCCTTTGCTAGAGTCAAC+GGG | + | chr4_1:55393077-55393096 | None:intergenic | 45.0% | |
| TGACTCTAGCAAAGGAACTC+GGG | - | chr4_1:55393079-55393098 | Msa0557100:CDS | 45.0% | |
| GTTAAGTCTGAGCTTCAAGG+CGG | - | chr4_1:55393206-55393225 | Msa0557100:CDS | 45.0% | |
| ! | CTTTCATGCAATGGTGGAAC+TGG | - | chr4_1:55393230-55393249 | Msa0557100:CDS | 45.0% |
| CTTTCATGTGCTTCGCAATC+TGG | + | chr4_1:55393640-55393659 | None:intergenic | 45.0% | |
| CAGATTGCGAAGCACATGAA+AGG | - | chr4_1:55393638-55393657 | Msa0557100:CDS | 45.0% | |
| AAGCACATGAAAGGCAGGAT+TGG | - | chr4_1:55393647-55393666 | Msa0557100:CDS | 45.0% | |
| AGCACATGAAAGGCAGGATT+GGG | - | chr4_1:55393648-55393667 | Msa0557100:CDS | 45.0% | |
| GGAAACAGTGTAGAGAGAGA+TGG | - | chr4_1:55393669-55393688 | Msa0557100:CDS | 45.0% | |
| GGAAGATCCCTAGAAAGGTA+AGG | + | chr4_1:55392735-55392754 | None:intergenic | 45.0% | |
| !!! | GGGATCGCTGATTTTATGGA+AGG | + | chr4_1:55392765-55392784 | None:intergenic | 45.0% |
| !!! | TGTGGGGATCGCTGATTTTA+TGG | + | chr4_1:55392769-55392788 | None:intergenic | 45.0% |
| AAAATCAGCGATCCCCACAA+TGG | - | chr4_1:55392770-55392789 | Msa0557100:CDS | 45.0% | |
| GTTGAGAAGGAACCATTGTG+GGG | + | chr4_1:55392785-55392804 | None:intergenic | 45.0% | |
| GGTTGAGAAGGAACCATTGT+GGG | + | chr4_1:55392786-55392805 | None:intergenic | 45.0% | |
| TGGTTGAGAAGGAACCATTG+TGG | + | chr4_1:55392787-55392806 | None:intergenic | 45.0% | |
| ACAATGGTTCCTTCTCAACC+AGG | - | chr4_1:55392786-55392805 | Msa0557100:CDS | 45.0% | |
| ATAGTTGGACCTGGTTGAGA+AGG | + | chr4_1:55392798-55392817 | None:intergenic | 45.0% | |
| !! | GATGGTGGAGGTGAAATAGT+TGG | + | chr4_1:55392813-55392832 | None:intergenic | 45.0% |
| TAAGGAACATCCCCTGAACA+AGG | - | chr4_1:55392875-55392894 | Msa0557100:intron | 45.0% | |
| !! | GATCATAGGAAATGGGCTGA+TGG | + | chr4_1:55392940-55392959 | None:intergenic | 45.0% |
| GGGGTTTGGATCATAGGAAA+TGG | + | chr4_1:55392948-55392967 | None:intergenic | 45.0% | |
| TAGGAAGGGGTTTGGATCAT+AGG | + | chr4_1:55392954-55392973 | None:intergenic | 45.0% | |
| ! | TGTACACAGCCTTGTAGGAA+GGG | + | chr4_1:55392968-55392987 | None:intergenic | 45.0% |
| ! | ATTGGTGTACACAGCCTTGT+AGG | + | chr4_1:55392973-55392992 | None:intergenic | 45.0% |
| TACAAGGCTGTGTACACCAA+TGG | - | chr4_1:55392972-55392991 | Msa0557100:intron | 45.0% | |
| GTTCCTTTGCTAGAGTCAAC+GGG | + | chr4_1:55393077-55393096 | None:intergenic | 45.0% | |
| TGACTCTAGCAAAGGAACTC+GGG | - | chr4_1:55393079-55393098 | Msa0557100:CDS | 45.0% | |
| GTTAAGTCTGAGCTTCAAGG+CGG | - | chr4_1:55393206-55393225 | Msa0557100:CDS | 45.0% | |
| ! | CTTTCATGCAATGGTGGAAC+TGG | - | chr4_1:55393230-55393249 | Msa0557100:CDS | 45.0% |
| CTTTCATGTGCTTCGCAATC+TGG | + | chr4_1:55393640-55393659 | None:intergenic | 45.0% | |
| CAGATTGCGAAGCACATGAA+AGG | - | chr4_1:55393638-55393657 | Msa0557100:CDS | 45.0% | |
| AAGCACATGAAAGGCAGGAT+TGG | - | chr4_1:55393647-55393666 | Msa0557100:CDS | 45.0% | |
| AGCACATGAAAGGCAGGATT+GGG | - | chr4_1:55393648-55393667 | Msa0557100:CDS | 45.0% | |
| GGAAACAGTGTAGAGAGAGA+TGG | - | chr4_1:55393669-55393688 | Msa0557100:CDS | 45.0% | |
| !!! | TATTATTTTGAATAATATTT+TGG | + | chr4_1:55393307-55393326 | None:intergenic | 5.0% |
| !!! | TTTTTTTAATATATTTTTGT+AGG | - | chr4_1:55393570-55393589 | Msa0557100:CDS | 5.0% |
| !!! | TTTTTTAATATATTTTTGTA+GGG | - | chr4_1:55393571-55393590 | Msa0557100:CDS | 5.0% |
| !!! | TATTATTTTGAATAATATTT+TGG | + | chr4_1:55393307-55393326 | None:intergenic | 5.0% |
| !!! | TTTTTTTAATATATTTTTGT+AGG | - | chr4_1:55393570-55393589 | Msa0557100:CDS | 5.0% |
| !!! | TTTTTTAATATATTTTTGTA+GGG | - | chr4_1:55393571-55393590 | Msa0557100:CDS | 5.0% |
| GGAGGTGAAATAGTTGGACC+TGG | + | chr4_1:55392807-55392826 | None:intergenic | 50.0% | |
| !! | GTAGTGCAATGTGATGGTGG+AGG | + | chr4_1:55392825-55392844 | None:intergenic | 50.0% |
| !! | TGGTGGTTAGCCTTGTTCAG+GGG | + | chr4_1:55392888-55392907 | None:intergenic | 50.0% |
| !! | GTGGTGGTTAGCCTTGTTCA+GGG | + | chr4_1:55392889-55392908 | None:intergenic | 50.0% |
| !! | AGTGGTGGTTAGCCTTGTTC+AGG | + | chr4_1:55392890-55392909 | None:intergenic | 50.0% |
| !! | CATAGGAAATGGGCTGATGG+AGG | + | chr4_1:55392937-55392956 | None:intergenic | 50.0% |
| GATCCAAACCCCTTCCTACA+AGG | - | chr4_1:55392956-55392975 | Msa0557100:intron | 50.0% | |
| ! | GTACACAGCCTTGTAGGAAG+GGG | + | chr4_1:55392967-55392986 | None:intergenic | 50.0% |
| ! | GTGTACACAGCCTTGTAGGA+AGG | + | chr4_1:55392969-55392988 | None:intergenic | 50.0% |
| GTGTACACCAATGGATCCCA+AGG | - | chr4_1:55392981-55393000 | Msa0557100:intron | 50.0% | |
| CAAGGCGGTCTTTCATGCAA+TGG | - | chr4_1:55393221-55393240 | Msa0557100:CDS | 50.0% | |
| !! | GGGTCAATGGACTGCAAATG+AGG | - | chr4_1:55393361-55393380 | Msa0557100:CDS | 50.0% |
| TTGCGAAGCACATGAAAGGC+AGG | - | chr4_1:55393642-55393661 | Msa0557100:CDS | 50.0% | |
| GGAGGTGAAATAGTTGGACC+TGG | + | chr4_1:55392807-55392826 | None:intergenic | 50.0% | |
| !! | GTAGTGCAATGTGATGGTGG+AGG | + | chr4_1:55392825-55392844 | None:intergenic | 50.0% |
| !! | TGGTGGTTAGCCTTGTTCAG+GGG | + | chr4_1:55392888-55392907 | None:intergenic | 50.0% |
| !! | GTGGTGGTTAGCCTTGTTCA+GGG | + | chr4_1:55392889-55392908 | None:intergenic | 50.0% |
| !! | AGTGGTGGTTAGCCTTGTTC+AGG | + | chr4_1:55392890-55392909 | None:intergenic | 50.0% |
| !! | CATAGGAAATGGGCTGATGG+AGG | + | chr4_1:55392937-55392956 | None:intergenic | 50.0% |
| GATCCAAACCCCTTCCTACA+AGG | - | chr4_1:55392956-55392975 | Msa0557100:intron | 50.0% | |
| ! | GTACACAGCCTTGTAGGAAG+GGG | + | chr4_1:55392967-55392986 | None:intergenic | 50.0% |
| ! | GTGTACACAGCCTTGTAGGA+AGG | + | chr4_1:55392969-55392988 | None:intergenic | 50.0% |
| GTGTACACCAATGGATCCCA+AGG | - | chr4_1:55392981-55393000 | Msa0557100:intron | 50.0% | |
| CAAGGCGGTCTTTCATGCAA+TGG | - | chr4_1:55393221-55393240 | Msa0557100:CDS | 50.0% | |
| !! | GGGTCAATGGACTGCAAATG+AGG | - | chr4_1:55393361-55393380 | Msa0557100:CDS | 50.0% |
| TTGCGAAGCACATGAAAGGC+AGG | - | chr4_1:55393642-55393661 | Msa0557100:CDS | 50.0% | |
| !! | GGAAATGGGCTGATGGAGGA+AGG | + | chr4_1:55392933-55392952 | None:intergenic | 55.0% |
| ! | CAGCCTTGTAGGAAGGGGTT+TGG | + | chr4_1:55392962-55392981 | None:intergenic | 55.0% |
| !! | GGTCCCGTTGACTCTAGCAA+AGG | - | chr4_1:55393071-55393090 | Msa0557100:CDS | 55.0% |
| GGCGGTCTTTCATGCAATGG+TGG | - | chr4_1:55393224-55393243 | Msa0557100:CDS | 55.0% | |
| !! | GGAAATGGGCTGATGGAGGA+AGG | + | chr4_1:55392933-55392952 | None:intergenic | 55.0% |
| ! | CAGCCTTGTAGGAAGGGGTT+TGG | + | chr4_1:55392962-55392981 | None:intergenic | 55.0% |
| !! | GGTCCCGTTGACTCTAGCAA+AGG | - | chr4_1:55393071-55393090 | Msa0557100:CDS | 55.0% |
| GGCGGTCTTTCATGCAATGG+TGG | - | chr4_1:55393224-55393243 | Msa0557100:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 55392699 | 55393718 | 55392699 | ID=Msa0557100;Name=Msa0557100 |
| chr4_1 | mRNA | 55392699 | 55393718 | 55392699 | ID=Msa0557100-mRNA-1;Parent=Msa0557100;Name=Msa0557100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|272 |
| chr4_1 | exon | 55393030 | 55393718 | 55393030 | ID=Msa0557100-mRNA-1:exon:16567;Parent=Msa0557100-mRNA-1 |
| chr4_1 | exon | 55392699 | 55392825 | 55392699 | ID=Msa0557100-mRNA-1:exon:16566;Parent=Msa0557100-mRNA-1 |
| chr4_1 | CDS | 55393030 | 55393718 | 55393030 | ID=Msa0557100-mRNA-1:cds;Parent=Msa0557100-mRNA-1 |
| chr4_1 | CDS | 55392699 | 55392825 | 55392699 | ID=Msa0557100-mRNA-1:cds;Parent=Msa0557100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
