Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557760 | KEH31034.1 | 83.502 | 297 | 26 | 2 | 1 | 297 | 1 | 274 | 4.63e-167 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557760 | sp|Q1PFR7|LEC2_ARATH | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.63e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557760 | A0A072UMM3 | 83.502 | 297 | 26 | 2 | 1 | 297 | 1 | 274 | 2.21e-167 | 474 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0557760 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557760 | MtrunA17_Chr4g0047031 | 83.502 | 297 | 26 | 2 | 1 | 297 | 73 | 346 | 4.97e-171 | 477 |
| Msa0557760 | MtrunA17_Chr7g0251891 | 34.503 | 171 | 97 | 6 | 98 | 265 | 9 | 167 | 4.52e-20 | 86.3 |
| Msa0557760 | MtrunA17_Chr7g0237841 | 42.105 | 95 | 54 | 1 | 100 | 193 | 618 | 712 | 7.37e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557760 | AT1G28300.1 | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.74e-25 | 102 |
| Msa0557760 | AT3G24650.1 | 35.625 | 160 | 92 | 4 | 100 | 255 | 566 | 718 | 1.39e-19 | 89.4 |
| Msa0557760 | AT3G26790.1 | 36.134 | 119 | 74 | 2 | 98 | 214 | 84 | 202 | 1.80e-19 | 87.0 |
Find 59 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAGTCGACTAATAATT+TGG | 0.175655 | 4_1:+56237943 | Msa0557760:CDS |
| TTCCATAGGTATTGGATTAA+TGG | 0.179633 | 4_1:+56237202 | Msa0557760:intron |
| AGGTGACATTGCAGTATTAT+TGG | 0.262098 | 4_1:-56238002 | None:intergenic |
| TACTGCAATGTCACCTATAT+TGG | 0.265257 | 4_1:+56238009 | Msa0557760:CDS |
| TTGCAGTATTATTGGTTTCT+TGG | 0.266997 | 4_1:-56237994 | None:intergenic |
| AAACATGTGGAGTTCTTTCT+TGG | 0.273984 | 4_1:-56236393 | None:intergenic |
| TGCAGTATTATTGGTTTCTT+GGG | 0.347184 | 4_1:-56237993 | None:intergenic |
| TTTACAGTCACCTTTCCATC+TGG | 0.368295 | 4_1:-56236424 | None:intergenic |
| TGGTTTCTTGGGCGACTGAT+TGG | 0.387076 | 4_1:-56237982 | None:intergenic |
| TATATTGGACCATACCGTTT+TGG | 0.393571 | 4_1:+56238024 | Msa0557760:CDS |
| TATTAGTCGACTGAATTTGT+TGG | 0.408347 | 4_1:-56237937 | None:intergenic |
| TAAAACTAGAATGTATATTC+TGG | 0.416222 | 4_1:+56237225 | Msa0557760:CDS |
| ATCCCTTCTTTGCTAGGGGC+TGG | 0.418097 | 4_1:-56237024 | None:intergenic |
| AAAACGGTATGGTCCAATAT+AGG | 0.420315 | 4_1:-56238022 | None:intergenic |
| CTTCAATCCCTTCTTTGCTA+GGG | 0.422481 | 4_1:-56237029 | None:intergenic |
| AACATGTGGAGTTCTTTCTT+GGG | 0.423807 | 4_1:-56236392 | None:intergenic |
| CTTCCAGCCCCTAGCAAAGA+AGG | 0.423970 | 4_1:+56237021 | Msa0557760:CDS |
| CTCCCATGCATAGTTTGTAA+TGG | 0.426934 | 4_1:-56237364 | None:intergenic |
| TCTTGGGCGACTGATTGGTT+TGG | 0.430360 | 4_1:-56237977 | None:intergenic |
| CTATGCATGGGAGATTATCT+AGG | 0.431047 | 4_1:+56237374 | Msa0557760:CDS |
| ACTTCAATCCCTTCTTTGCT+AGG | 0.433841 | 4_1:-56237030 | None:intergenic |
| AAGAGCGATGTTAAGAACTA+TGG | 0.459102 | 4_1:+56236562 | Msa0557760:CDS |
| ACTTTATTCCTCTTCTCTGA+TGG | 0.466086 | 4_1:+56236171 | Msa0557760:CDS |
| ATATATATTCTGGTCGTGAA+TGG | 0.483145 | 4_1:+56237064 | Msa0557760:CDS |
| ATGTATATTCTGGAGGATAC+AGG | 0.488201 | 4_1:+56237235 | Msa0557760:CDS |
| TGGGCGACTGATTGGTTTGG+TGG | 0.491784 | 4_1:-56237974 | None:intergenic |
| CTTTATTCCTCTTCTCTGAT+GGG | 0.493478 | 4_1:+56236172 | Msa0557760:CDS |
| CTCCTCAACTTGGAATTGAA+AGG | 0.494865 | 4_1:+56236227 | Msa0557760:CDS |
| TCCTCAACTTGGAATTGAAA+GGG | 0.497695 | 4_1:+56236228 | Msa0557760:CDS |
| AGATTATCTAGGCCTTTATG+AGG | 0.503786 | 4_1:+56237385 | Msa0557760:CDS |
| AAACCATTACAAACTATGCA+TGG | 0.506884 | 4_1:+56237361 | Msa0557760:CDS |
| TTCAATCCCTTCTTTGCTAG+GGG | 0.508172 | 4_1:-56237028 | None:intergenic |
| TCCCTTTCAATTCCAAGTTG+AGG | 0.508366 | 4_1:-56236229 | None:intergenic |
| TTACAGTCACCTTTCCATCT+GGG | 0.509432 | 4_1:-56236423 | None:intergenic |
| ATCATTACCATCTACCAAAA+CGG | 0.511373 | 4_1:-56238038 | None:intergenic |
| CATCGAGGAAATTGTATGCA+TGG | 0.513461 | 4_1:-56236134 | None:intergenic |
| TCCTTGCCTTGGTCTGCACA+AGG | 0.515897 | 4_1:-56237890 | None:intergenic |
| ATCGAGGAAATTGTATGCAT+GGG | 0.519150 | 4_1:-56236133 | None:intergenic |
| ATTCAAACTACTCCTCAACT+TGG | 0.519405 | 4_1:+56236217 | Msa0557760:CDS |
| GGAGTAGTTTGAATTATGAA+AGG | 0.529192 | 4_1:-56236208 | None:intergenic |
| TGTTGGTTGGCCAAGTCTGA+TGG | 0.537691 | 4_1:-56237920 | None:intergenic |
| AAAATTCAAATAGAGGGAGG+TGG | 0.561158 | 4_1:+56236990 | Msa0557760:intron |
| CGATGAACAACAAAGCAGCT+TGG | 0.562949 | 4_1:+56238078 | Msa0557760:CDS |
| GAAGAGGAATAAAGTTCATG+AGG | 0.578069 | 4_1:-56236163 | None:intergenic |
| AACCATTACAAACTATGCAT+GGG | 0.584630 | 4_1:+56237362 | Msa0557760:CDS |
| AGTCGACTGAATTTGTTGGT+TGG | 0.588883 | 4_1:-56237933 | None:intergenic |
| TACCATCTACCAAAACGGTA+TGG | 0.590397 | 4_1:-56238033 | None:intergenic |
| ACTTTGTCCCATCAGAGAAG+AGG | 0.602953 | 4_1:-56236179 | None:intergenic |
| TTGGTAGATGGTAATGATGG+TGG | 0.608724 | 4_1:+56238043 | Msa0557760:CDS |
| AACTAGAATGTATATTCTGG+AGG | 0.612428 | 4_1:+56237228 | Msa0557760:CDS |
| TTCCAGCCCCTAGCAAAGAA+GGG | 0.619594 | 4_1:+56237022 | Msa0557760:CDS |
| GCAAAATTGCTAGAGAACAA+AGG | 0.622012 | 4_1:+56236284 | Msa0557760:CDS |
| ACCTTGTGCAGACCAAGGCA+AGG | 0.622413 | 4_1:+56237889 | Msa0557760:CDS |
| CTCTTACCTTGTGCAGACCA+AGG | 0.626902 | 4_1:+56237884 | Msa0557760:CDS |
| TGGTCGCATTGTCCTCCCAA+AGG | 0.635548 | 4_1:+56236582 | Msa0557760:CDS |
| GTAGATGGTAATGATGGTGG+TGG | 0.655874 | 4_1:+56238046 | Msa0557760:CDS |
| GGCTTGTGATCTATCGACAG+TGG | 0.662909 | 4_1:+56237859 | Msa0557760:CDS |
| TTCATGAGGTTGATTCATCG+AGG | 0.675142 | 4_1:-56236149 | None:intergenic |
| AAGAAGCCCTCACCTTTGGG+AGG | 0.679981 | 4_1:-56236594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTTTTGTTCTTT+TGG | + | chr4_1:56236936-56236955 | Msa0557760:intron | 10.0% |
| !!! | TATTTTTATTTTTGTTCTTT+TGG | + | chr4_1:56236936-56236955 | Msa0557760:intron | 10.0% |
| !!! | TGTTTTATAAATCATAACAA+CGG | - | chr4_1:56236705-56236724 | None:intergenic | 15.0% |
| !!! | TACAATCATTTTTTTCATTT+GGG | - | chr4_1:56237606-56237625 | None:intergenic | 15.0% |
| !!! | TGTTTTATAAATCATAACAA+CGG | - | chr4_1:56236705-56236724 | None:intergenic | 15.0% |
| !!! | TACAATCATTTTTTTCATTT+GGG | - | chr4_1:56237606-56237625 | None:intergenic | 15.0% |
| !!! | GTTTTATAAATCATAACAAC+GGG | - | chr4_1:56236704-56236723 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | + | chr4_1:56237054-56237073 | Msa0557760:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | + | chr4_1:56237225-56237244 | Msa0557760:CDS | 20.0% |
| !!! | CTACAATCATTTTTTTCATT+TGG | - | chr4_1:56237607-56237626 | None:intergenic | 20.0% |
| !!! | GTTTTATAAATCATAACAAC+GGG | - | chr4_1:56236704-56236723 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | + | chr4_1:56237054-56237073 | Msa0557760:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | + | chr4_1:56237225-56237244 | Msa0557760:CDS | 20.0% |
| !!! | CTACAATCATTTTTTTCATT+TGG | - | chr4_1:56237607-56237626 | None:intergenic | 20.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | + | chr4_1:56236260-56236279 | Msa0557760:CDS | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | + | chr4_1:56236466-56236485 | Msa0557760:intron | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | + | chr4_1:56237329-56237348 | Msa0557760:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | + | chr4_1:56237330-56237349 | Msa0557760:intron | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | + | chr4_1:56237943-56237962 | Msa0557760:CDS | 25.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | - | chr4_1:56238120-56238139 | None:intergenic | 25.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | + | chr4_1:56236260-56236279 | Msa0557760:CDS | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | + | chr4_1:56236466-56236485 | Msa0557760:intron | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | + | chr4_1:56237329-56237348 | Msa0557760:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | + | chr4_1:56237330-56237349 | Msa0557760:intron | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | + | chr4_1:56237943-56237962 | Msa0557760:CDS | 25.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | - | chr4_1:56238120-56238139 | None:intergenic | 25.0% |
| GGAGTAGTTTGAATTATGAA+AGG | - | chr4_1:56236211-56236230 | None:intergenic | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | + | chr4_1:56236894-56236913 | Msa0557760:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | + | chr4_1:56236983-56237002 | Msa0557760:intron | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | + | chr4_1:56236984-56237003 | Msa0557760:intron | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | + | chr4_1:56237064-56237083 | Msa0557760:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | - | chr4_1:56237177-56237196 | None:intergenic | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | + | chr4_1:56237176-56237195 | Msa0557760:intron | 30.0% |
| GTATAAACTGGAAATTCCAT+AGG | + | chr4_1:56237188-56237207 | Msa0557760:intron | 30.0% | |
| !! | TTCCATAGGTATTGGATTAA+TGG | + | chr4_1:56237202-56237221 | Msa0557760:intron | 30.0% |
| TACCATTAATCCAATACCTA+TGG | - | chr4_1:56237207-56237226 | None:intergenic | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | + | chr4_1:56237228-56237247 | Msa0557760:CDS | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | - | chr4_1:56237268-56237287 | None:intergenic | 30.0% | |
| ! | TGTTTCAGTTCTCATGATTT+TGG | + | chr4_1:56237292-56237311 | Msa0557760:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | + | chr4_1:56237293-56237312 | Msa0557760:intron | 30.0% |
| AAACCATTACAAACTATGCA+TGG | + | chr4_1:56237361-56237380 | Msa0557760:CDS | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | + | chr4_1:56237362-56237381 | Msa0557760:CDS | 30.0% | |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | - | chr4_1:56237400-56237419 | None:intergenic | 30.0% |
| TGAGGACGAACTTAAAAATT+TGG | + | chr4_1:56237403-56237422 | Msa0557760:CDS | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | - | chr4_1:56237668-56237687 | None:intergenic | 30.0% | |
| !!! | TCTTGTTTTACAACTCACAA+TGG | - | chr4_1:56237771-56237790 | None:intergenic | 30.0% |
| TATTAGTCGACTGAATTTGT+TGG | - | chr4_1:56237940-56237959 | None:intergenic | 30.0% | |
| !! | TGCAGTATTATTGGTTTCTT+GGG | - | chr4_1:56237996-56238015 | None:intergenic | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | - | chr4_1:56237997-56238016 | None:intergenic | 30.0% |
| ATCATTACCATCTACCAAAA+CGG | - | chr4_1:56238041-56238060 | None:intergenic | 30.0% | |
| GGAGTAGTTTGAATTATGAA+AGG | - | chr4_1:56236211-56236230 | None:intergenic | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | + | chr4_1:56236894-56236913 | Msa0557760:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | + | chr4_1:56236983-56237002 | Msa0557760:intron | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | + | chr4_1:56236984-56237003 | Msa0557760:intron | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | + | chr4_1:56237064-56237083 | Msa0557760:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | - | chr4_1:56237177-56237196 | None:intergenic | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | + | chr4_1:56237176-56237195 | Msa0557760:intron | 30.0% |
| GTATAAACTGGAAATTCCAT+AGG | + | chr4_1:56237188-56237207 | Msa0557760:intron | 30.0% | |
| !! | TTCCATAGGTATTGGATTAA+TGG | + | chr4_1:56237202-56237221 | Msa0557760:intron | 30.0% |
| TACCATTAATCCAATACCTA+TGG | - | chr4_1:56237207-56237226 | None:intergenic | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | + | chr4_1:56237228-56237247 | Msa0557760:CDS | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | - | chr4_1:56237268-56237287 | None:intergenic | 30.0% | |
| ! | TGTTTCAGTTCTCATGATTT+TGG | + | chr4_1:56237292-56237311 | Msa0557760:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | + | chr4_1:56237293-56237312 | Msa0557760:intron | 30.0% |
| AAACCATTACAAACTATGCA+TGG | + | chr4_1:56237361-56237380 | Msa0557760:CDS | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | + | chr4_1:56237362-56237381 | Msa0557760:CDS | 30.0% | |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | - | chr4_1:56237400-56237419 | None:intergenic | 30.0% |
| TGAGGACGAACTTAAAAATT+TGG | + | chr4_1:56237403-56237422 | Msa0557760:CDS | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | - | chr4_1:56237668-56237687 | None:intergenic | 30.0% | |
| !!! | TCTTGTTTTACAACTCACAA+TGG | - | chr4_1:56237771-56237790 | None:intergenic | 30.0% |
| TATTAGTCGACTGAATTTGT+TGG | - | chr4_1:56237940-56237959 | None:intergenic | 30.0% | |
| !! | TGCAGTATTATTGGTTTCTT+GGG | - | chr4_1:56237996-56238015 | None:intergenic | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | - | chr4_1:56237997-56238016 | None:intergenic | 30.0% |
| ATCATTACCATCTACCAAAA+CGG | - | chr4_1:56238041-56238060 | None:intergenic | 30.0% | |
| GAAGAGGAATAAAGTTCATG+AGG | - | chr4_1:56236166-56236185 | None:intergenic | 35.0% | |
| ACTTTATTCCTCTTCTCTGA+TGG | + | chr4_1:56236171-56236190 | Msa0557760:CDS | 35.0% | |
| CTTTATTCCTCTTCTCTGAT+GGG | + | chr4_1:56236172-56236191 | Msa0557760:CDS | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | + | chr4_1:56236217-56236236 | Msa0557760:CDS | 35.0% | |
| TCCTCAACTTGGAATTGAAA+GGG | + | chr4_1:56236228-56236247 | Msa0557760:CDS | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | + | chr4_1:56236284-56236303 | Msa0557760:CDS | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | - | chr4_1:56236395-56236414 | None:intergenic | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | - | chr4_1:56236396-56236415 | None:intergenic | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | + | chr4_1:56236562-56236581 | Msa0557760:CDS | 35.0% | |
| !! | TGTGTCACTGTATTTTCGAA+AGG | - | chr4_1:56236859-56236878 | None:intergenic | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | - | chr4_1:56236990-56237009 | None:intergenic | 35.0% |
| ! | ACCTCCCTCTATTTGAATTT+TGG | - | chr4_1:56236991-56237010 | None:intergenic | 35.0% |
| AAAATTCAAATAGAGGGAGG+TGG | + | chr4_1:56236990-56237009 | Msa0557760:intron | 35.0% | |
| !! | AGGGATTGAAGTCATTTTCA+AGG | + | chr4_1:56237041-56237060 | Msa0557760:CDS | 35.0% |
| TATACCCATTAGAGTTTGGA+AGG | - | chr4_1:56237173-56237192 | None:intergenic | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | + | chr4_1:56237194-56237213 | Msa0557760:intron | 35.0% | |
| ! | ATGTATATTCTGGAGGATAC+AGG | + | chr4_1:56237235-56237254 | Msa0557760:CDS | 35.0% |
| AGATTATCTAGGCCTTTATG+AGG | + | chr4_1:56237385-56237404 | Msa0557760:CDS | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | - | chr4_1:56237662-56237681 | None:intergenic | 35.0% | |
| AGGTGACATTGCAGTATTAT+TGG | - | chr4_1:56238005-56238024 | None:intergenic | 35.0% | |
| TACTGCAATGTCACCTATAT+TGG | + | chr4_1:56238009-56238028 | Msa0557760:CDS | 35.0% | |
| AAAACGGTATGGTCCAATAT+AGG | - | chr4_1:56238025-56238044 | None:intergenic | 35.0% | |
| ! | TATATTGGACCATACCGTTT+TGG | + | chr4_1:56238024-56238043 | Msa0557760:CDS | 35.0% |
| !! | GTTTTGGTAGATGGTAATGA+TGG | + | chr4_1:56238040-56238059 | Msa0557760:CDS | 35.0% |
| GAAGAGGAATAAAGTTCATG+AGG | - | chr4_1:56236166-56236185 | None:intergenic | 35.0% | |
| ACTTTATTCCTCTTCTCTGA+TGG | + | chr4_1:56236171-56236190 | Msa0557760:CDS | 35.0% | |
| CTTTATTCCTCTTCTCTGAT+GGG | + | chr4_1:56236172-56236191 | Msa0557760:CDS | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | + | chr4_1:56236217-56236236 | Msa0557760:CDS | 35.0% | |
| TCCTCAACTTGGAATTGAAA+GGG | + | chr4_1:56236228-56236247 | Msa0557760:CDS | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | + | chr4_1:56236284-56236303 | Msa0557760:CDS | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | - | chr4_1:56236395-56236414 | None:intergenic | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | - | chr4_1:56236396-56236415 | None:intergenic | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | + | chr4_1:56236562-56236581 | Msa0557760:CDS | 35.0% | |
| !! | TGTGTCACTGTATTTTCGAA+AGG | - | chr4_1:56236859-56236878 | None:intergenic | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | - | chr4_1:56236990-56237009 | None:intergenic | 35.0% |
| ! | ACCTCCCTCTATTTGAATTT+TGG | - | chr4_1:56236991-56237010 | None:intergenic | 35.0% |
| AAAATTCAAATAGAGGGAGG+TGG | + | chr4_1:56236990-56237009 | Msa0557760:intron | 35.0% | |
| !! | AGGGATTGAAGTCATTTTCA+AGG | + | chr4_1:56237041-56237060 | Msa0557760:CDS | 35.0% |
| TATACCCATTAGAGTTTGGA+AGG | - | chr4_1:56237173-56237192 | None:intergenic | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | + | chr4_1:56237194-56237213 | Msa0557760:intron | 35.0% | |
| ! | ATGTATATTCTGGAGGATAC+AGG | + | chr4_1:56237235-56237254 | Msa0557760:CDS | 35.0% |
| AGATTATCTAGGCCTTTATG+AGG | + | chr4_1:56237385-56237404 | Msa0557760:CDS | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | - | chr4_1:56237662-56237681 | None:intergenic | 35.0% | |
| AGGTGACATTGCAGTATTAT+TGG | - | chr4_1:56238005-56238024 | None:intergenic | 35.0% | |
| TACTGCAATGTCACCTATAT+TGG | + | chr4_1:56238009-56238028 | Msa0557760:CDS | 35.0% | |
| AAAACGGTATGGTCCAATAT+AGG | - | chr4_1:56238025-56238044 | None:intergenic | 35.0% | |
| ! | TATATTGGACCATACCGTTT+TGG | + | chr4_1:56238024-56238043 | Msa0557760:CDS | 35.0% |
| !! | GTTTTGGTAGATGGTAATGA+TGG | + | chr4_1:56238040-56238059 | Msa0557760:CDS | 35.0% |
| ! | TTCATGAGGTTGATTCATCG+AGG | - | chr4_1:56236152-56236171 | None:intergenic | 40.0% |
| CTCCTCAACTTGGAATTGAA+AGG | + | chr4_1:56236227-56236246 | Msa0557760:CDS | 40.0% | |
| TCCCTTTCAATTCCAAGTTG+AGG | - | chr4_1:56236232-56236251 | None:intergenic | 40.0% | |
| TCTGGGCTGTAAAAAACATG+TGG | - | chr4_1:56236409-56236428 | None:intergenic | 40.0% | |
| !!! | CATGTTTTTTACAGCCCAGA+TGG | + | chr4_1:56236409-56236428 | Msa0557760:CDS | 40.0% |
| ! | TTTTTACAGCCCAGATGGAA+AGG | + | chr4_1:56236414-56236433 | Msa0557760:CDS | 40.0% |
| TTACAGTCACCTTTCCATCT+GGG | - | chr4_1:56236426-56236445 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | - | chr4_1:56236427-56236446 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | + | chr4_1:56236987-56237006 | Msa0557760:intron | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | - | chr4_1:56237031-56237050 | None:intergenic | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | - | chr4_1:56237032-56237051 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | - | chr4_1:56237033-56237052 | None:intergenic | 40.0% | |
| ! | CTCCCATGCATAGTTTGTAA+TGG | - | chr4_1:56237367-56237386 | None:intergenic | 40.0% |
| CTATGCATGGGAGATTATCT+AGG | + | chr4_1:56237374-56237393 | Msa0557760:CDS | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | + | chr4_1:56237838-56237857 | Msa0557760:intron | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | - | chr4_1:56237904-56237923 | None:intergenic | 40.0% |
| GGAAAAAGAACCATCAGACT+TGG | + | chr4_1:56237910-56237929 | Msa0557760:CDS | 40.0% | |
| !! | AGTCGACTGAATTTGTTGGT+TGG | - | chr4_1:56237936-56237955 | None:intergenic | 40.0% |
| TACCATCTACCAAAACGGTA+TGG | - | chr4_1:56238036-56238055 | None:intergenic | 40.0% | |
| ! | TTGGTAGATGGTAATGATGG+TGG | + | chr4_1:56238043-56238062 | Msa0557760:CDS | 40.0% |
| ! | TTCATGAGGTTGATTCATCG+AGG | - | chr4_1:56236152-56236171 | None:intergenic | 40.0% |
| CTCCTCAACTTGGAATTGAA+AGG | + | chr4_1:56236227-56236246 | Msa0557760:CDS | 40.0% | |
| TCCCTTTCAATTCCAAGTTG+AGG | - | chr4_1:56236232-56236251 | None:intergenic | 40.0% | |
| TCTGGGCTGTAAAAAACATG+TGG | - | chr4_1:56236409-56236428 | None:intergenic | 40.0% | |
| !!! | CATGTTTTTTACAGCCCAGA+TGG | + | chr4_1:56236409-56236428 | Msa0557760:CDS | 40.0% |
| ! | TTTTTACAGCCCAGATGGAA+AGG | + | chr4_1:56236414-56236433 | Msa0557760:CDS | 40.0% |
| TTACAGTCACCTTTCCATCT+GGG | - | chr4_1:56236426-56236445 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | - | chr4_1:56236427-56236446 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | + | chr4_1:56236987-56237006 | Msa0557760:intron | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | - | chr4_1:56237031-56237050 | None:intergenic | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | - | chr4_1:56237032-56237051 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | - | chr4_1:56237033-56237052 | None:intergenic | 40.0% | |
| ! | CTCCCATGCATAGTTTGTAA+TGG | - | chr4_1:56237367-56237386 | None:intergenic | 40.0% |
| CTATGCATGGGAGATTATCT+AGG | + | chr4_1:56237374-56237393 | Msa0557760:CDS | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | + | chr4_1:56237838-56237857 | Msa0557760:intron | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | - | chr4_1:56237904-56237923 | None:intergenic | 40.0% |
| GGAAAAAGAACCATCAGACT+TGG | + | chr4_1:56237910-56237929 | Msa0557760:CDS | 40.0% | |
| !! | AGTCGACTGAATTTGTTGGT+TGG | - | chr4_1:56237936-56237955 | None:intergenic | 40.0% |
| TACCATCTACCAAAACGGTA+TGG | - | chr4_1:56238036-56238055 | None:intergenic | 40.0% | |
| ! | TTGGTAGATGGTAATGATGG+TGG | + | chr4_1:56238043-56238062 | Msa0557760:CDS | 40.0% |
| ACTTTGTCCCATCAGAGAAG+AGG | - | chr4_1:56236182-56236201 | None:intergenic | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | - | chr4_1:56236600-56236619 | None:intergenic | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | + | chr4_1:56236604-56236623 | Msa0557760:intron | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | + | chr4_1:56237165-56237184 | Msa0557760:intron | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | + | chr4_1:56237166-56237185 | Msa0557760:intron | 45.0% | |
| ! | TTTGGGAAGTGTGCATTGAC+TGG | - | chr4_1:56237589-56237608 | None:intergenic | 45.0% |
| CATGAACTCTTCTTTGTGCG+AGG | + | chr4_1:56237813-56237832 | Msa0557760:intron | 45.0% | |
| !! | GACCATACCGTTTTGGTAGA+TGG | + | chr4_1:56238031-56238050 | Msa0557760:CDS | 45.0% |
| !! | GTAGATGGTAATGATGGTGG+TGG | + | chr4_1:56238046-56238065 | Msa0557760:CDS | 45.0% |
| CGATGAACAACAAAGCAGCT+TGG | + | chr4_1:56238078-56238097 | Msa0557760:CDS | 45.0% | |
| ACTTTGTCCCATCAGAGAAG+AGG | - | chr4_1:56236182-56236201 | None:intergenic | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | - | chr4_1:56236600-56236619 | None:intergenic | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | + | chr4_1:56236604-56236623 | Msa0557760:intron | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | + | chr4_1:56237165-56237184 | Msa0557760:intron | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | + | chr4_1:56237166-56237185 | Msa0557760:intron | 45.0% | |
| ! | TTTGGGAAGTGTGCATTGAC+TGG | - | chr4_1:56237589-56237608 | None:intergenic | 45.0% |
| CATGAACTCTTCTTTGTGCG+AGG | + | chr4_1:56237813-56237832 | Msa0557760:intron | 45.0% | |
| !! | GACCATACCGTTTTGGTAGA+TGG | + | chr4_1:56238031-56238050 | Msa0557760:CDS | 45.0% |
| !! | GTAGATGGTAATGATGGTGG+TGG | + | chr4_1:56238046-56238065 | Msa0557760:CDS | 45.0% |
| CGATGAACAACAAAGCAGCT+TGG | + | chr4_1:56238078-56238097 | Msa0557760:CDS | 45.0% | |
| !! | TTTAATTAATTATATTTATG+TGG | + | chr4_1:56236448-56236467 | Msa0557760:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | - | chr4_1:56237441-56237460 | None:intergenic | 5.0% |
| !! | TTTAATTAATTATATTTATG+TGG | + | chr4_1:56236448-56236467 | Msa0557760:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | - | chr4_1:56237441-56237460 | None:intergenic | 5.0% |
| CATTGTCCTCCCAAAGGTGA+GGG | + | chr4_1:56236588-56236607 | Msa0557760:intron | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | - | chr4_1:56236601-56236620 | None:intergenic | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | + | chr4_1:56236603-56236622 | Msa0557760:intron | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | + | chr4_1:56237022-56237041 | Msa0557760:CDS | 50.0% | |
| GGCTTGTGATCTATCGACAG+TGG | + | chr4_1:56237859-56237878 | Msa0557760:CDS | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | + | chr4_1:56237884-56237903 | Msa0557760:CDS | 50.0% | |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | - | chr4_1:56237923-56237942 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | - | chr4_1:56237980-56237999 | None:intergenic | 50.0% |
| TGGTTTCTTGGGCGACTGAT+TGG | - | chr4_1:56237985-56238004 | None:intergenic | 50.0% | |
| CATTGTCCTCCCAAAGGTGA+GGG | + | chr4_1:56236588-56236607 | Msa0557760:intron | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | - | chr4_1:56236601-56236620 | None:intergenic | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | + | chr4_1:56236603-56236622 | Msa0557760:intron | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | + | chr4_1:56237022-56237041 | Msa0557760:CDS | 50.0% | |
| GGCTTGTGATCTATCGACAG+TGG | + | chr4_1:56237859-56237878 | Msa0557760:CDS | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | + | chr4_1:56237884-56237903 | Msa0557760:CDS | 50.0% | |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | - | chr4_1:56237923-56237942 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | - | chr4_1:56237980-56237999 | None:intergenic | 50.0% |
| TGGTTTCTTGGGCGACTGAT+TGG | - | chr4_1:56237985-56238004 | None:intergenic | 50.0% | |
| TGGTCGCATTGTCCTCCCAA+AGG | + | chr4_1:56236582-56236601 | Msa0557760:CDS | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | + | chr4_1:56236587-56236606 | Msa0557760:intron | 55.0% | |
| AAGAAGCCCTCACCTTTGGG+AGG | - | chr4_1:56236597-56236616 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | + | chr4_1:56237021-56237040 | Msa0557760:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | - | chr4_1:56237027-56237046 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | + | chr4_1:56237889-56237908 | Msa0557760:CDS | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | - | chr4_1:56237893-56237912 | None:intergenic | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | - | chr4_1:56237977-56237996 | None:intergenic | 55.0% |
| TGGTCGCATTGTCCTCCCAA+AGG | + | chr4_1:56236582-56236601 | Msa0557760:CDS | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | + | chr4_1:56236587-56236606 | Msa0557760:intron | 55.0% | |
| AAGAAGCCCTCACCTTTGGG+AGG | - | chr4_1:56236597-56236616 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | + | chr4_1:56237021-56237040 | Msa0557760:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | - | chr4_1:56237027-56237046 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | + | chr4_1:56237889-56237908 | Msa0557760:CDS | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | - | chr4_1:56237893-56237912 | None:intergenic | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | - | chr4_1:56237977-56237996 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 56236136 | 56238144 | 56236136 | ID=Msa0557760;Name=Msa0557760 |
| chr4_1 | mRNA | 56236136 | 56238144 | 56236136 | ID=Msa0557760-mRNA-1;Parent=Msa0557760;Name=Msa0557760-mRNA-1;_AED=0.08;_eAED=0.15;_QI=0|0|0|1|1|1|6|0|298 |
| chr4_1 | exon | 56236136 | 56236435 | 56236136 | ID=Msa0557760-mRNA-1:exon:16817;Parent=Msa0557760-mRNA-1 |
| chr4_1 | exon | 56236529 | 56236603 | 56236529 | ID=Msa0557760-mRNA-1:exon:16818;Parent=Msa0557760-mRNA-1 |
| chr4_1 | exon | 56237003 | 56237100 | 56237003 | ID=Msa0557760-mRNA-1:exon:16819;Parent=Msa0557760-mRNA-1 |
| chr4_1 | exon | 56237210 | 56237256 | 56237210 | ID=Msa0557760-mRNA-1:exon:16820;Parent=Msa0557760-mRNA-1 |
| chr4_1 | exon | 56237351 | 56237424 | 56237351 | ID=Msa0557760-mRNA-1:exon:16821;Parent=Msa0557760-mRNA-1 |
| chr4_1 | exon | 56237842 | 56238144 | 56237842 | ID=Msa0557760-mRNA-1:exon:16822;Parent=Msa0557760-mRNA-1 |
| chr4_1 | CDS | 56236136 | 56236435 | 56236136 | ID=Msa0557760-mRNA-1:cds;Parent=Msa0557760-mRNA-1 |
| chr4_1 | CDS | 56236529 | 56236603 | 56236529 | ID=Msa0557760-mRNA-1:cds;Parent=Msa0557760-mRNA-1 |
| chr4_1 | CDS | 56237003 | 56237100 | 56237003 | ID=Msa0557760-mRNA-1:cds;Parent=Msa0557760-mRNA-1 |
| chr4_1 | CDS | 56237210 | 56237256 | 56237210 | ID=Msa0557760-mRNA-1:cds;Parent=Msa0557760-mRNA-1 |
| chr4_1 | CDS | 56237351 | 56237424 | 56237351 | ID=Msa0557760-mRNA-1:cds;Parent=Msa0557760-mRNA-1 |
| chr4_1 | CDS | 56237842 | 56238144 | 56237842 | ID=Msa0557760-mRNA-1:cds;Parent=Msa0557760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
