Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557990 | XP_013457050.1 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 5.83e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557990 | sp|P22335|HSF24_SOLPE | 38.119 | 202 | 98 | 4 | 30 | 210 | 6 | 201 | 2.31e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557990 | G7ZZ89 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 2.78e-147 | 417 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0557990 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557990 | MtrunA17_Chr4g0047421 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 5.36e-151 | 417 |
| Msa0557990 | MtrunA17_Chr5g0397881 | 37.220 | 223 | 99 | 5 | 13 | 199 | 1 | 218 | 2.93e-41 | 143 |
| Msa0557990 | MtrunA17_Chr7g0257331 | 45.833 | 168 | 82 | 4 | 31 | 197 | 20 | 179 | 1.76e-39 | 135 |
| Msa0557990 | MtrunA17_Chr1g0203601 | 37.931 | 203 | 99 | 4 | 19 | 203 | 6 | 199 | 6.25e-38 | 133 |
| Msa0557990 | MtrunA17_Chr1g0185131 | 40.722 | 194 | 94 | 5 | 16 | 202 | 16 | 195 | 1.06e-36 | 130 |
| Msa0557990 | MtrunA17_Chr5g0441531 | 38.547 | 179 | 97 | 3 | 30 | 200 | 22 | 195 | 5.42e-35 | 124 |
| Msa0557990 | MtrunA17_Chr3g0134031 | 57.426 | 101 | 38 | 1 | 30 | 130 | 21 | 116 | 1.11e-34 | 126 |
| Msa0557990 | MtrunA17_Chr6g0472421 | 55.556 | 99 | 39 | 1 | 31 | 129 | 31 | 124 | 1.12e-34 | 125 |
| Msa0557990 | MtrunA17_Chr6g0467041 | 56.122 | 98 | 38 | 1 | 32 | 129 | 21 | 113 | 2.16e-34 | 124 |
| Msa0557990 | MtrunA17_Chr1g0204741 | 43.293 | 164 | 83 | 3 | 31 | 192 | 38 | 193 | 5.29e-34 | 123 |
| Msa0557990 | MtrunA17_Chr5g0402291 | 52.000 | 100 | 43 | 1 | 30 | 129 | 6 | 100 | 2.20e-33 | 121 |
| Msa0557990 | MtrunA17_Chr5g0410881 | 55.000 | 100 | 40 | 1 | 30 | 129 | 29 | 123 | 2.29e-33 | 124 |
| Msa0557990 | MtrunA17_Chr8g0375041 | 36.957 | 184 | 108 | 2 | 30 | 210 | 6 | 184 | 1.93e-32 | 117 |
| Msa0557990 | MtrunA17_Chr2g0330821 | 40.449 | 178 | 90 | 5 | 31 | 207 | 77 | 239 | 2.50e-32 | 119 |
| Msa0557990 | MtrunA17_Chr7g0260331 | 53.535 | 99 | 41 | 1 | 31 | 129 | 47 | 140 | 4.56e-32 | 119 |
| Msa0557990 | MtrunA17_Chr4g0071051 | 58.163 | 98 | 36 | 2 | 31 | 128 | 99 | 191 | 6.37e-32 | 119 |
| Msa0557990 | MtrunA17_Chr4g0039891 | 55.102 | 98 | 39 | 1 | 33 | 130 | 12 | 104 | 2.35e-31 | 119 |
| Msa0557990 | MtrunA17_Chr8g0378061 | 55.208 | 96 | 38 | 1 | 34 | 129 | 23 | 113 | 6.85e-31 | 117 |
| Msa0557990 | MtrunA17_Chr8g0379701 | 39.333 | 150 | 75 | 3 | 33 | 182 | 12 | 145 | 4.82e-30 | 114 |
| Msa0557990 | MtrunA17_Chr3g0135831 | 39.759 | 166 | 89 | 4 | 31 | 193 | 44 | 201 | 8.92e-30 | 113 |
| Msa0557990 | MtrunA17_Chr2g0284481 | 36.905 | 168 | 92 | 3 | 33 | 200 | 15 | 168 | 1.28e-28 | 110 |
| Msa0557990 | MtrunA17_Chr6g0485571 | 50.000 | 98 | 44 | 1 | 32 | 129 | 10 | 102 | 1.83e-27 | 106 |
| Msa0557990 | MtrunA17_Chr8g0392001 | 40.385 | 156 | 82 | 5 | 32 | 186 | 21 | 166 | 3.33e-27 | 106 |
| Msa0557990 | MtrunA17_Chr1g0179321 | 56.061 | 66 | 24 | 1 | 32 | 97 | 48 | 108 | 1.35e-20 | 82.8 |
| Msa0557990 | MtrunA17_Chr4g0023771 | 52.381 | 63 | 25 | 1 | 33 | 95 | 15 | 72 | 2.89e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557990 | AT5G62020.1 | 35.025 | 197 | 97 | 3 | 30 | 200 | 20 | 211 | 2.92e-37 | 131 |
| Msa0557990 | AT2G41690.1 | 38.974 | 195 | 98 | 4 | 21 | 199 | 28 | 217 | 1.93e-36 | 128 |
| Msa0557990 | AT4G36990.1 | 36.792 | 212 | 101 | 5 | 22 | 211 | 3 | 203 | 1.08e-35 | 127 |
| Msa0557990 | AT4G17750.1 | 56.436 | 101 | 39 | 1 | 30 | 130 | 49 | 144 | 1.40e-34 | 128 |
| Msa0557990 | AT1G46264.1 | 49.153 | 118 | 55 | 1 | 30 | 147 | 31 | 143 | 2.64e-34 | 125 |
| Msa0557990 | AT4G11660.1 | 54.455 | 101 | 41 | 1 | 30 | 130 | 56 | 151 | 2.70e-33 | 123 |
| Msa0557990 | AT5G43840.1 | 51.351 | 111 | 49 | 1 | 31 | 141 | 17 | 122 | 6.94e-33 | 120 |
| Msa0557990 | AT5G03720.2 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 9.68e-33 | 122 |
| Msa0557990 | AT5G03720.1 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 9.68e-33 | 122 |
| Msa0557990 | AT1G32330.1 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 9.75e-33 | 123 |
| Msa0557990 | AT1G32330.2 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 9.76e-33 | 123 |
| Msa0557990 | AT4G13980.1 | 37.569 | 181 | 90 | 3 | 34 | 211 | 24 | 184 | 1.46e-32 | 122 |
| Msa0557990 | AT3G22830.1 | 53.000 | 100 | 42 | 1 | 31 | 130 | 59 | 153 | 1.72e-32 | 121 |
| Msa0557990 | AT3G63350.1 | 55.102 | 98 | 39 | 1 | 31 | 128 | 26 | 118 | 7.70e-32 | 117 |
| Msa0557990 | AT5G16820.1 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 1.05e-31 | 120 |
| Msa0557990 | AT5G16820.2 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 1.05e-31 | 120 |
| Msa0557990 | AT2G26150.1 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.26e-31 | 117 |
| Msa0557990 | AT2G26150.4 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.26e-31 | 117 |
| Msa0557990 | AT3G51910.1 | 48.276 | 116 | 53 | 3 | 30 | 144 | 26 | 135 | 1.59e-30 | 113 |
| Msa0557990 | AT3G02990.1 | 52.577 | 97 | 41 | 1 | 33 | 129 | 23 | 114 | 9.85e-29 | 112 |
| Msa0557990 | AT3G24520.1 | 46.296 | 108 | 53 | 1 | 32 | 139 | 16 | 118 | 1.22e-28 | 109 |
| Msa0557990 | AT5G54070.1 | 51.546 | 97 | 42 | 1 | 32 | 128 | 70 | 161 | 2.70e-28 | 108 |
| Msa0557990 | AT4G18880.1 | 38.012 | 171 | 92 | 4 | 21 | 186 | 6 | 167 | 4.18e-25 | 101 |
| Msa0557990 | AT5G45710.3 | 37.500 | 160 | 86 | 3 | 33 | 186 | 13 | 164 | 9.83e-25 | 99.8 |
| Msa0557990 | AT5G45710.1 | 37.500 | 160 | 86 | 3 | 33 | 186 | 13 | 164 | 9.83e-25 | 99.8 |
| Msa0557990 | AT1G67970.1 | 46.465 | 99 | 47 | 2 | 32 | 129 | 18 | 111 | 4.83e-24 | 98.2 |
| Msa0557990 | AT4G18870.1 | 38.710 | 93 | 51 | 2 | 33 | 125 | 146 | 232 | 9.93e-15 | 71.6 |
| Msa0557990 | AT4G18870.1 | 34.862 | 109 | 61 | 4 | 28 | 134 | 8 | 108 | 1.70e-12 | 65.5 |
Find 42 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGTCTCCTAACTTTATTT+TGG | 0.243004 | 4_1:-56581913 | None:intergenic |
| TTGTTGTGCTTGAAATATTT+AGG | 0.265731 | 4_1:-56580009 | None:intergenic |
| ACTCTAACCTCTCCTTCTTT+AGG | 0.266225 | 4_1:-56581814 | None:intergenic |
| AATGGTGCAGGGCACCTTAA+TGG | 0.303317 | 4_1:-56579853 | None:intergenic |
| CAATTTCCTTCTGATCAAAA+TGG | 0.319082 | 4_1:+56579817 | Msa0557990:CDS |
| TCTATTGAAGACCTATGATT+TGG | 0.323717 | 4_1:+56579876 | Msa0557990:CDS |
| AGAAATTTCAAAAGGGTTGC+AGG | 0.342009 | 4_1:+56581639 | Msa0557990:CDS |
| GAGTGTCCCTTAAGCCATTA+AGG | 0.355422 | 4_1:+56579839 | Msa0557990:CDS |
| CCAGCATGAGAAATTTCAAA+AGG | 0.385876 | 4_1:+56581631 | Msa0557990:CDS |
| CAGGGCACCTTAATGGCTTA+AGG | 0.389744 | 4_1:-56579846 | None:intergenic |
| GGAGTGTCTCTCTCAGTATA+TGG | 0.401866 | 4_1:+56581883 | Msa0557990:CDS |
| AGAAAATATCATCTAAAAGA+TGG | 0.402907 | 4_1:+56581603 | Msa0557990:CDS |
| TCATAGGTCTTCAATAGAAA+TGG | 0.435601 | 4_1:-56579871 | None:intergenic |
| ATAACCGCCAAAATAAAGTT+AGG | 0.439240 | 4_1:+56581906 | Msa0557990:CDS |
| GGCACTTGAAATGAAGTTGT+TGG | 0.448229 | 4_1:+56581862 | Msa0557990:CDS |
| CAGCATGAGAAATTTCAAAA+GGG | 0.481854 | 4_1:+56581632 | Msa0557990:CDS |
| GAACAAGACTTGAGATATTG+AGG | 0.482054 | 4_1:-56581710 | None:intergenic |
| ATTGAAGACCTATGATTTGG+TGG | 0.487727 | 4_1:+56579879 | Msa0557990:CDS |
| GTCTTCAATAGAAATGGTGC+AGG | 0.494487 | 4_1:-56579865 | None:intergenic |
| GTGAGCTCTGAGAATTCAGC+TGG | 0.504092 | 4_1:-56579982 | None:intergenic |
| ACCTTGTTCCACCAAATCAT+AGG | 0.508730 | 4_1:-56579887 | None:intergenic |
| GAAAATATCATCTAAAAGAT+GGG | 0.510989 | 4_1:+56581604 | Msa0557990:CDS |
| TCATGGAATGAAGAAGGAAA+TGG | 0.522950 | 4_1:+56579943 | Msa0557990:CDS |
| AGGGCACCTTAATGGCTTAA+GGG | 0.526456 | 4_1:-56579845 | None:intergenic |
| AGATATTGAGGAAACACGCT+TGG | 0.529081 | 4_1:-56581698 | None:intergenic |
| TAGCAATCATGAACTACTCA+TGG | 0.534704 | 4_1:+56581778 | Msa0557990:CDS |
| ATTGTGTCATGGAATGAAGA+AGG | 0.551158 | 4_1:+56579937 | Msa0557990:CDS |
| GGAGAACAAGAACCTAAAGA+AGG | 0.564741 | 4_1:+56581802 | Msa0557990:CDS |
| ACCTATGATTTGGTGGAACA+AGG | 0.572095 | 4_1:+56579886 | Msa0557990:CDS |
| GGTAGTGAAGGTGAAGAAGA+TGG | 0.572755 | 4_1:+56579907 | Msa0557990:CDS |
| AATGTGATGGAGCTAAACTT+TGG | 0.582577 | 4_1:+56579784 | Msa0557990:CDS |
| ACAAGAACCTAAAGAAGGAG+AGG | 0.585621 | 4_1:+56581807 | Msa0557990:CDS |
| ATGGCATTAAAATTGTGTCA+TGG | 0.592944 | 4_1:+56579926 | Msa0557990:CDS |
| AATGCAAATAGCTGAATGCA+AGG | 0.596737 | 4_1:+56581841 | Msa0557990:CDS |
| AAAGGGTTGCAGGCACATGT+TGG | 0.597442 | 4_1:+56581649 | Msa0557990:CDS |
| TAACATGAGTGGAAATGTGA+TGG | 0.602953 | 4_1:+56579771 | None:intergenic |
| GTGCTTGAAATATTTAGGCA+AGG | 0.616604 | 4_1:-56580004 | None:intergenic |
| ACATGTTGGTTGAAATCAGT+AGG | 0.621186 | 4_1:+56581663 | Msa0557990:CDS |
| ATATCTCAAGTCTTGTTCTG+AGG | 0.622749 | 4_1:+56581715 | Msa0557990:CDS |
| TTGGTGGAACAAGGTAGTGA+AGG | 0.622819 | 4_1:+56579895 | Msa0557990:CDS |
| TCTTCAATAGAAATGGTGCA+GGG | 0.670077 | 4_1:-56579864 | None:intergenic |
| CAATCATGAACTACTCATGG+AGG | 0.705177 | 4_1:+56581781 | Msa0557990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAAAAATAAAATATTTG+GGG | - | chr4_1:56580988-56581007 | None:intergenic | 10.0% |
| !! | AACAATTAACATAAATTAAA+AGG | + | chr4_1:56581082-56581101 | Msa0557990:intron | 10.0% |
| !! | GAATAAAAATAAAATATTTG+GGG | - | chr4_1:56580988-56581007 | None:intergenic | 10.0% |
| !! | AACAATTAACATAAATTAAA+AGG | + | chr4_1:56581082-56581101 | Msa0557990:intron | 10.0% |
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | chr4_1:56580268-56580287 | None:intergenic | 15.0% |
| !!! | AAATATATATTGATTCATCA+AGG | + | chr4_1:56580336-56580355 | Msa0557990:intron | 15.0% |
| !! | TAGCTAAAAATATATTATTG+GGG | - | chr4_1:56581041-56581060 | None:intergenic | 15.0% |
| !! | GTAGCTAAAAATATATTATT+GGG | - | chr4_1:56581042-56581061 | None:intergenic | 15.0% |
| !!! | TAATTGAATATTTGCTAAAT+AGG | - | chr4_1:56581266-56581285 | None:intergenic | 15.0% |
| !!! | AAATACAAAGAAATTTTTTG+AGG | - | chr4_1:56581383-56581402 | None:intergenic | 15.0% |
| !! | TCAAAAAATTTCTTTGTATT+TGG | + | chr4_1:56581382-56581401 | Msa0557990:intron | 15.0% |
| !! | ATATATATATTAACACAACA+TGG | + | chr4_1:56581500-56581519 | Msa0557990:intron | 15.0% |
| !!! | ATGACTAATATTTCTTTTTT+AGG | - | chr4_1:56580268-56580287 | None:intergenic | 15.0% |
| !!! | AAATATATATTGATTCATCA+AGG | + | chr4_1:56580336-56580355 | Msa0557990:intron | 15.0% |
| !! | TAGCTAAAAATATATTATTG+GGG | - | chr4_1:56581041-56581060 | None:intergenic | 15.0% |
| !! | GTAGCTAAAAATATATTATT+GGG | - | chr4_1:56581042-56581061 | None:intergenic | 15.0% |
| !!! | TAATTGAATATTTGCTAAAT+AGG | - | chr4_1:56581266-56581285 | None:intergenic | 15.0% |
| !!! | AAATACAAAGAAATTTTTTG+AGG | - | chr4_1:56581383-56581402 | None:intergenic | 15.0% |
| !! | TCAAAAAATTTCTTTGTATT+TGG | + | chr4_1:56581382-56581401 | Msa0557990:intron | 15.0% |
| !! | ATATATATATTAACACAACA+TGG | + | chr4_1:56581500-56581519 | Msa0557990:intron | 15.0% |
| !! | ATTGTTCTATACTTTCTATT+AGG | - | chr4_1:56580188-56580207 | None:intergenic | 20.0% |
| !!! | TAATAGAAAGTATAGAACAA+TGG | + | chr4_1:56580187-56580206 | Msa0557990:intron | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | chr4_1:56580305-56580324 | None:intergenic | 20.0% |
| !! | AAAAGTTCTTTGAATTACTT+GGG | + | chr4_1:56580436-56580455 | Msa0557990:intron | 20.0% |
| !! | TCAAAATATACGCTAAAATA+TGG | - | chr4_1:56580542-56580561 | None:intergenic | 20.0% |
| !! | AACAAATGTCTTTAATTGTT+TGG | + | chr4_1:56580620-56580639 | Msa0557990:intron | 20.0% |
| !! | GGTAGCTAAAAATATATTAT+TGG | - | chr4_1:56581043-56581062 | None:intergenic | 20.0% |
| !!! | TTTGTAAATGAATTTGTTTG+AGG | - | chr4_1:56581064-56581083 | None:intergenic | 20.0% |
| !!! | GCTAATAATGTTTTTACTAT+CGG | - | chr4_1:56581158-56581177 | None:intergenic | 20.0% |
| !! | ACTAATTAATTACTTCAACA+GGG | + | chr4_1:56581575-56581594 | Msa0557990:intron | 20.0% |
| !! | AGAAAATATCATCTAAAAGA+TGG | + | chr4_1:56581603-56581622 | Msa0557990:CDS | 20.0% |
| !! | GAAAATATCATCTAAAAGAT+GGG | + | chr4_1:56581604-56581623 | Msa0557990:CDS | 20.0% |
| !! | ATTGTTCTATACTTTCTATT+AGG | - | chr4_1:56580188-56580207 | None:intergenic | 20.0% |
| !!! | TAATAGAAAGTATAGAACAA+TGG | + | chr4_1:56580187-56580206 | Msa0557990:intron | 20.0% |
| !!! | TAATATCAACATTCTTTTGA+AGG | - | chr4_1:56580305-56580324 | None:intergenic | 20.0% |
| !! | AAAAGTTCTTTGAATTACTT+GGG | + | chr4_1:56580436-56580455 | Msa0557990:intron | 20.0% |
| !! | TCAAAATATACGCTAAAATA+TGG | - | chr4_1:56580542-56580561 | None:intergenic | 20.0% |
| !! | AACAAATGTCTTTAATTGTT+TGG | + | chr4_1:56580620-56580639 | Msa0557990:intron | 20.0% |
| !! | GGTAGCTAAAAATATATTAT+TGG | - | chr4_1:56581043-56581062 | None:intergenic | 20.0% |
| !!! | TTTGTAAATGAATTTGTTTG+AGG | - | chr4_1:56581064-56581083 | None:intergenic | 20.0% |
| !!! | GCTAATAATGTTTTTACTAT+CGG | - | chr4_1:56581158-56581177 | None:intergenic | 20.0% |
| !! | ACTAATTAATTACTTCAACA+GGG | + | chr4_1:56581575-56581594 | Msa0557990:intron | 20.0% |
| !! | AGAAAATATCATCTAAAAGA+TGG | + | chr4_1:56581603-56581622 | Msa0557990:CDS | 20.0% |
| !! | GAAAATATCATCTAAAAGAT+GGG | + | chr4_1:56581604-56581623 | Msa0557990:CDS | 20.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | chr4_1:56580012-56580031 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAGAA+AGG | - | chr4_1:56580295-56580314 | None:intergenic | 25.0% |
| !!! | CTAATTTTTTGTTTGTTCAC+TGG | + | chr4_1:56580389-56580408 | Msa0557990:intron | 25.0% |
| !! | AGTAATTCAAAGAACTTTTG+AGG | - | chr4_1:56580435-56580454 | None:intergenic | 25.0% |
| ! | CAAAAGTTCTTTGAATTACT+TGG | + | chr4_1:56580435-56580454 | Msa0557990:intron | 25.0% |
| ! | AAAGTTCTTTGAATTACTTG+GGG | + | chr4_1:56580437-56580456 | Msa0557990:intron | 25.0% |
| !! | GACGGTTCAAATTTTAAATT+CGG | - | chr4_1:56580588-56580607 | None:intergenic | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | chr4_1:56580754-56580773 | Msa0557990:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | chr4_1:56580824-56580843 | Msa0557990:intron | 25.0% |
| ! | AAAATGAACAAAATAACCAG+CGG | - | chr4_1:56581436-56581455 | None:intergenic | 25.0% |
| ! | CACTAATTAATTACTTCAAC+AGG | + | chr4_1:56581574-56581593 | Msa0557990:intron | 25.0% |
| ! | CTAATTAATTACTTCAACAG+GGG | + | chr4_1:56581576-56581595 | Msa0557990:intron | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | chr4_1:56581916-56581935 | None:intergenic | 25.0% |
| ! | TTGTTGTGCTTGAAATATTT+AGG | - | chr4_1:56580012-56580031 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAGGAATAGAA+AGG | - | chr4_1:56580295-56580314 | None:intergenic | 25.0% |
| !!! | CTAATTTTTTGTTTGTTCAC+TGG | + | chr4_1:56580389-56580408 | Msa0557990:intron | 25.0% |
| !! | AGTAATTCAAAGAACTTTTG+AGG | - | chr4_1:56580435-56580454 | None:intergenic | 25.0% |
| ! | CAAAAGTTCTTTGAATTACT+TGG | + | chr4_1:56580435-56580454 | Msa0557990:intron | 25.0% |
| ! | AAAGTTCTTTGAATTACTTG+GGG | + | chr4_1:56580437-56580456 | Msa0557990:intron | 25.0% |
| !! | GACGGTTCAAATTTTAAATT+CGG | - | chr4_1:56580588-56580607 | None:intergenic | 25.0% |
| ! | AGTTAGTGACACAAATTATA+AGG | + | chr4_1:56580754-56580773 | Msa0557990:intron | 25.0% |
| ! | TGCTATATTTAACGTTATAC+TGG | + | chr4_1:56580824-56580843 | Msa0557990:intron | 25.0% |
| ! | AAAATGAACAAAATAACCAG+CGG | - | chr4_1:56581436-56581455 | None:intergenic | 25.0% |
| ! | CACTAATTAATTACTTCAAC+AGG | + | chr4_1:56581574-56581593 | Msa0557990:intron | 25.0% |
| ! | CTAATTAATTACTTCAACAG+GGG | + | chr4_1:56581576-56581595 | Msa0557990:intron | 25.0% |
| !!! | ATAGTCTCCTAACTTTATTT+TGG | - | chr4_1:56581916-56581935 | None:intergenic | 25.0% |
| !! | CATTTTGATCAGAAGGAAAT+TGG | - | chr4_1:56579819-56579838 | None:intergenic | 30.0% |
| CAATTTCCTTCTGATCAAAA+TGG | + | chr4_1:56579817-56579836 | Msa0557990:CDS | 30.0% | |
| TCATAGGTCTTCAATAGAAA+TGG | - | chr4_1:56579874-56579893 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | chr4_1:56579876-56579895 | Msa0557990:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | chr4_1:56579926-56579945 | Msa0557990:CDS | 30.0% | |
| ! | ACACAAATCTCACTTGATTT+TGG | + | chr4_1:56580144-56580163 | Msa0557990:intron | 30.0% |
| ! | AAATCTCACTTGATTTTGGA+AGG | + | chr4_1:56580148-56580167 | Msa0557990:intron | 30.0% |
| ATAGCTAACCTTCATATTAG+TGG | - | chr4_1:56580225-56580244 | None:intergenic | 30.0% | |
| AAGTTCTTTGAATTACTTGG+GGG | + | chr4_1:56580438-56580457 | Msa0557990:intron | 30.0% | |
| TTTGTTGAATCGAAATTGGA+CGG | - | chr4_1:56580606-56580625 | None:intergenic | 30.0% | |
| ! | GACATTTGTTGAATCGAAAT+TGG | - | chr4_1:56580610-56580629 | None:intergenic | 30.0% |
| TTTAACGTTATACTGGTACT+TGG | + | chr4_1:56580831-56580850 | Msa0557990:intron | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | chr4_1:56580832-56580851 | Msa0557990:intron | 30.0% | |
| !!! | TGTCTTTGACTGTTATTTTC+AGG | + | chr4_1:56580925-56580944 | Msa0557990:intron | 30.0% |
| !!! | GTCTTTGACTGTTATTTTCA+GGG | + | chr4_1:56580926-56580945 | Msa0557990:intron | 30.0% |
| !!! | TCTTTGACTGTTATTTTCAG+GGG | + | chr4_1:56580927-56580946 | Msa0557990:intron | 30.0% |
| CTCTATAAAATCAAGCTTCA+AGG | - | chr4_1:56581304-56581323 | None:intergenic | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | chr4_1:56581632-56581651 | Msa0557990:CDS | 30.0% | |
| ATAACCGCCAAAATAAAGTT+AGG | + | chr4_1:56581906-56581925 | Msa0557990:CDS | 30.0% | |
| !! | CATTTTGATCAGAAGGAAAT+TGG | - | chr4_1:56579819-56579838 | None:intergenic | 30.0% |
| CAATTTCCTTCTGATCAAAA+TGG | + | chr4_1:56579817-56579836 | Msa0557990:CDS | 30.0% | |
| TCATAGGTCTTCAATAGAAA+TGG | - | chr4_1:56579874-56579893 | None:intergenic | 30.0% | |
| TCTATTGAAGACCTATGATT+TGG | + | chr4_1:56579876-56579895 | Msa0557990:CDS | 30.0% | |
| ATGGCATTAAAATTGTGTCA+TGG | + | chr4_1:56579926-56579945 | Msa0557990:CDS | 30.0% | |
| ! | ACACAAATCTCACTTGATTT+TGG | + | chr4_1:56580144-56580163 | Msa0557990:intron | 30.0% |
| ! | AAATCTCACTTGATTTTGGA+AGG | + | chr4_1:56580148-56580167 | Msa0557990:intron | 30.0% |
| ATAGCTAACCTTCATATTAG+TGG | - | chr4_1:56580225-56580244 | None:intergenic | 30.0% | |
| AAGTTCTTTGAATTACTTGG+GGG | + | chr4_1:56580438-56580457 | Msa0557990:intron | 30.0% | |
| TTTGTTGAATCGAAATTGGA+CGG | - | chr4_1:56580606-56580625 | None:intergenic | 30.0% | |
| ! | GACATTTGTTGAATCGAAAT+TGG | - | chr4_1:56580610-56580629 | None:intergenic | 30.0% |
| TTTAACGTTATACTGGTACT+TGG | + | chr4_1:56580831-56580850 | Msa0557990:intron | 30.0% | |
| TTAACGTTATACTGGTACTT+GGG | + | chr4_1:56580832-56580851 | Msa0557990:intron | 30.0% | |
| !!! | TGTCTTTGACTGTTATTTTC+AGG | + | chr4_1:56580925-56580944 | Msa0557990:intron | 30.0% |
| !!! | GTCTTTGACTGTTATTTTCA+GGG | + | chr4_1:56580926-56580945 | Msa0557990:intron | 30.0% |
| !!! | TCTTTGACTGTTATTTTCAG+GGG | + | chr4_1:56580927-56580946 | Msa0557990:intron | 30.0% |
| CTCTATAAAATCAAGCTTCA+AGG | - | chr4_1:56581304-56581323 | None:intergenic | 30.0% | |
| CAGCATGAGAAATTTCAAAA+GGG | + | chr4_1:56581632-56581651 | Msa0557990:CDS | 30.0% | |
| ATAACCGCCAAAATAAAGTT+AGG | + | chr4_1:56581906-56581925 | Msa0557990:CDS | 30.0% | |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | chr4_1:56579784-56579803 | Msa0557990:CDS | 35.0% |
| TCTTCAATAGAAATGGTGCA+GGG | - | chr4_1:56579867-56579886 | None:intergenic | 35.0% | |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | chr4_1:56579879-56579898 | Msa0557990:CDS | 35.0% |
| ATTGTGTCATGGAATGAAGA+AGG | + | chr4_1:56579937-56579956 | Msa0557990:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | chr4_1:56579943-56579962 | Msa0557990:CDS | 35.0% | |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | chr4_1:56579956-56579975 | Msa0557990:CDS | 35.0% |
| GTGCTTGAAATATTTAGGCA+AGG | - | chr4_1:56580007-56580026 | None:intergenic | 35.0% | |
| !! | AAGAACTTTTGAGGAAGCTA+GGG | - | chr4_1:56580426-56580445 | None:intergenic | 35.0% |
| !! | AAAGAACTTTTGAGGAAGCT+AGG | - | chr4_1:56580427-56580446 | None:intergenic | 35.0% |
| ! | GGGATTGGATTTTATGTAGA+TGG | + | chr4_1:56580458-56580477 | Msa0557990:intron | 35.0% |
| AATTCACACAGTCAAGACAT+CGG | + | chr4_1:56580490-56580509 | Msa0557990:intron | 35.0% | |
| !! | CTAATGGATTTGGATTTGCT+GGG | - | chr4_1:56580654-56580673 | None:intergenic | 35.0% |
| !! | ACTAATGGATTTGGATTTGC+TGG | - | chr4_1:56580655-56580674 | None:intergenic | 35.0% |
| !! | AGAGCTACTACTAATGGATT+TGG | - | chr4_1:56580664-56580683 | None:intergenic | 35.0% |
| ATCCATTAGTAGTAGCTCTT+TGG | + | chr4_1:56580665-56580684 | Msa0557990:intron | 35.0% | |
| TTCCAAAGAGCTACTACTAA+TGG | - | chr4_1:56580670-56580689 | None:intergenic | 35.0% | |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | chr4_1:56580727-56580746 | None:intergenic | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | chr4_1:56580728-56580747 | None:intergenic | 35.0% |
| CGTGCACAAAATGAAGAATT+TGG | + | chr4_1:56580728-56580747 | Msa0557990:intron | 35.0% | |
| !! | TGTACGTCGATATTGACTTT+GGG | - | chr4_1:56580800-56580819 | None:intergenic | 35.0% |
| ! | AGCTAGAGTAATTTTCACGA+GGG | - | chr4_1:56581410-56581429 | None:intergenic | 35.0% |
| ! | AAGCTAGAGTAATTTTCACG+AGG | - | chr4_1:56581411-56581430 | None:intergenic | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | chr4_1:56581634-56581653 | None:intergenic | 35.0% |
| CCAGCATGAGAAATTTCAAA+AGG | + | chr4_1:56581631-56581650 | Msa0557990:CDS | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | chr4_1:56581639-56581658 | Msa0557990:CDS | 35.0% | |
| ! | ACATGTTGGTTGAAATCAGT+AGG | + | chr4_1:56581663-56581682 | Msa0557990:CDS | 35.0% |
| GAACAAGACTTGAGATATTG+AGG | - | chr4_1:56581713-56581732 | None:intergenic | 35.0% | |
| !! | ATATCTCAAGTCTTGTTCTG+AGG | + | chr4_1:56581715-56581734 | Msa0557990:CDS | 35.0% |
| TAGCAATCATGAACTACTCA+TGG | + | chr4_1:56581778-56581797 | Msa0557990:CDS | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | chr4_1:56581841-56581860 | Msa0557990:CDS | 35.0% | |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | chr4_1:56581913-56581932 | None:intergenic | 35.0% |
| ! | AATGTGATGGAGCTAAACTT+TGG | + | chr4_1:56579784-56579803 | Msa0557990:CDS | 35.0% |
| TCTTCAATAGAAATGGTGCA+GGG | - | chr4_1:56579867-56579886 | None:intergenic | 35.0% | |
| ! | ATTGAAGACCTATGATTTGG+TGG | + | chr4_1:56579879-56579898 | Msa0557990:CDS | 35.0% |
| ATTGTGTCATGGAATGAAGA+AGG | + | chr4_1:56579937-56579956 | Msa0557990:CDS | 35.0% | |
| TCATGGAATGAAGAAGGAAA+TGG | + | chr4_1:56579943-56579962 | Msa0557990:CDS | 35.0% | |
| !!! | AAGGAAATGGTTTTGTTGTG+TGG | + | chr4_1:56579956-56579975 | Msa0557990:CDS | 35.0% |
| GTGCTTGAAATATTTAGGCA+AGG | - | chr4_1:56580007-56580026 | None:intergenic | 35.0% | |
| !! | AAGAACTTTTGAGGAAGCTA+GGG | - | chr4_1:56580426-56580445 | None:intergenic | 35.0% |
| !! | AAAGAACTTTTGAGGAAGCT+AGG | - | chr4_1:56580427-56580446 | None:intergenic | 35.0% |
| ! | GGGATTGGATTTTATGTAGA+TGG | + | chr4_1:56580458-56580477 | Msa0557990:intron | 35.0% |
| AATTCACACAGTCAAGACAT+CGG | + | chr4_1:56580490-56580509 | Msa0557990:intron | 35.0% | |
| !! | CTAATGGATTTGGATTTGCT+GGG | - | chr4_1:56580654-56580673 | None:intergenic | 35.0% |
| !! | ACTAATGGATTTGGATTTGC+TGG | - | chr4_1:56580655-56580674 | None:intergenic | 35.0% |
| !! | AGAGCTACTACTAATGGATT+TGG | - | chr4_1:56580664-56580683 | None:intergenic | 35.0% |
| ATCCATTAGTAGTAGCTCTT+TGG | + | chr4_1:56580665-56580684 | Msa0557990:intron | 35.0% | |
| TTCCAAAGAGCTACTACTAA+TGG | - | chr4_1:56580670-56580689 | None:intergenic | 35.0% | |
| ! | ATTCTTCATTTTGTGCACGT+GGG | - | chr4_1:56580727-56580746 | None:intergenic | 35.0% |
| ! | AATTCTTCATTTTGTGCACG+TGG | - | chr4_1:56580728-56580747 | None:intergenic | 35.0% |
| CGTGCACAAAATGAAGAATT+TGG | + | chr4_1:56580728-56580747 | Msa0557990:intron | 35.0% | |
| !! | TGTACGTCGATATTGACTTT+GGG | - | chr4_1:56580800-56580819 | None:intergenic | 35.0% |
| ! | AGCTAGAGTAATTTTCACGA+GGG | - | chr4_1:56581410-56581429 | None:intergenic | 35.0% |
| ! | AAGCTAGAGTAATTTTCACG+AGG | - | chr4_1:56581411-56581430 | None:intergenic | 35.0% |
| !!! | CCTTTTGAAATTTCTCATGC+TGG | - | chr4_1:56581634-56581653 | None:intergenic | 35.0% |
| CCAGCATGAGAAATTTCAAA+AGG | + | chr4_1:56581631-56581650 | Msa0557990:CDS | 35.0% | |
| AGAAATTTCAAAAGGGTTGC+AGG | + | chr4_1:56581639-56581658 | Msa0557990:CDS | 35.0% | |
| ! | ACATGTTGGTTGAAATCAGT+AGG | + | chr4_1:56581663-56581682 | Msa0557990:CDS | 35.0% |
| GAACAAGACTTGAGATATTG+AGG | - | chr4_1:56581713-56581732 | None:intergenic | 35.0% | |
| !! | ATATCTCAAGTCTTGTTCTG+AGG | + | chr4_1:56581715-56581734 | Msa0557990:CDS | 35.0% |
| TAGCAATCATGAACTACTCA+TGG | + | chr4_1:56581778-56581797 | Msa0557990:CDS | 35.0% | |
| AATGCAAATAGCTGAATGCA+AGG | + | chr4_1:56581841-56581860 | Msa0557990:CDS | 35.0% | |
| !!! | GTCTCCTAACTTTATTTTGG+CGG | - | chr4_1:56581913-56581932 | None:intergenic | 35.0% |
| !! | GACACTCCATTTTGATCAGA+AGG | - | chr4_1:56579826-56579845 | None:intergenic | 40.0% |
| GTCTTCAATAGAAATGGTGC+AGG | - | chr4_1:56579868-56579887 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | chr4_1:56579886-56579905 | Msa0557990:CDS | 40.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | chr4_1:56579890-56579909 | None:intergenic | 40.0% | |
| GAGAGAAAATCGATGAAGCT+AGG | - | chr4_1:56580075-56580094 | None:intergenic | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | chr4_1:56580217-56580236 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | chr4_1:56580214-56580233 | Msa0557990:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | chr4_1:56580443-56580462 | Msa0557990:intron | 40.0% | |
| !! | GTGTACGTCGATATTGACTT+TGG | - | chr4_1:56580801-56580820 | None:intergenic | 40.0% |
| ! | CTAGAGTAATTTTCACGAGG+GGG | - | chr4_1:56581408-56581427 | None:intergenic | 40.0% |
| ! | GCTAGAGTAATTTTCACGAG+GGG | - | chr4_1:56581409-56581428 | None:intergenic | 40.0% |
| AGATATTGAGGAAACACGCT+TGG | - | chr4_1:56581701-56581720 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | chr4_1:56581781-56581800 | Msa0557990:CDS | 40.0% | |
| GGAGAACAAGAACCTAAAGA+AGG | + | chr4_1:56581802-56581821 | Msa0557990:CDS | 40.0% | |
| ACAAGAACCTAAAGAAGGAG+AGG | + | chr4_1:56581807-56581826 | Msa0557990:CDS | 40.0% | |
| ACTCTAACCTCTCCTTCTTT+AGG | - | chr4_1:56581817-56581836 | None:intergenic | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | chr4_1:56581862-56581881 | Msa0557990:CDS | 40.0% | |
| !! | GACACTCCATTTTGATCAGA+AGG | - | chr4_1:56579826-56579845 | None:intergenic | 40.0% |
| GTCTTCAATAGAAATGGTGC+AGG | - | chr4_1:56579868-56579887 | None:intergenic | 40.0% | |
| !! | ACCTATGATTTGGTGGAACA+AGG | + | chr4_1:56579886-56579905 | Msa0557990:CDS | 40.0% |
| ACCTTGTTCCACCAAATCAT+AGG | - | chr4_1:56579890-56579909 | None:intergenic | 40.0% | |
| GAGAGAAAATCGATGAAGCT+AGG | - | chr4_1:56580075-56580094 | None:intergenic | 40.0% | |
| CCTTCATATTAGTGGCAGAA+AGG | - | chr4_1:56580217-56580236 | None:intergenic | 40.0% | |
| CCTTTCTGCCACTAATATGA+AGG | + | chr4_1:56580214-56580233 | Msa0557990:intron | 40.0% | |
| CTTTGAATTACTTGGGGGAT+TGG | + | chr4_1:56580443-56580462 | Msa0557990:intron | 40.0% | |
| !! | GTGTACGTCGATATTGACTT+TGG | - | chr4_1:56580801-56580820 | None:intergenic | 40.0% |
| ! | CTAGAGTAATTTTCACGAGG+GGG | - | chr4_1:56581408-56581427 | None:intergenic | 40.0% |
| ! | GCTAGAGTAATTTTCACGAG+GGG | - | chr4_1:56581409-56581428 | None:intergenic | 40.0% |
| AGATATTGAGGAAACACGCT+TGG | - | chr4_1:56581701-56581720 | None:intergenic | 40.0% | |
| CAATCATGAACTACTCATGG+AGG | + | chr4_1:56581781-56581800 | Msa0557990:CDS | 40.0% | |
| GGAGAACAAGAACCTAAAGA+AGG | + | chr4_1:56581802-56581821 | Msa0557990:CDS | 40.0% | |
| ACAAGAACCTAAAGAAGGAG+AGG | + | chr4_1:56581807-56581826 | Msa0557990:CDS | 40.0% | |
| ACTCTAACCTCTCCTTCTTT+AGG | - | chr4_1:56581817-56581836 | None:intergenic | 40.0% | |
| GGCACTTGAAATGAAGTTGT+TGG | + | chr4_1:56581862-56581881 | Msa0557990:CDS | 40.0% | |
| GAGTGTCCCTTAAGCCATTA+AGG | + | chr4_1:56579839-56579858 | Msa0557990:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | chr4_1:56579848-56579867 | None:intergenic | 45.0% |
| TTGGTGGAACAAGGTAGTGA+AGG | + | chr4_1:56579895-56579914 | Msa0557990:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | chr4_1:56579907-56579926 | Msa0557990:CDS | 45.0% | |
| GTCTTGACTGTGTGAATTCG+TGG | - | chr4_1:56580488-56580507 | None:intergenic | 45.0% | |
| ! | GCGAATCCCTTTGTATTGGT+GGG | + | chr4_1:56580949-56580968 | Msa0557990:intron | 45.0% |
| ! | CGAATCCCTTTGTATTGGTG+GGG | + | chr4_1:56580950-56580969 | Msa0557990:intron | 45.0% |
| AGCTACCCCACCAATACAAA+GGG | - | chr4_1:56580958-56580977 | None:intergenic | 45.0% | |
| AAGCTACCCCACCAATACAA+AGG | - | chr4_1:56580959-56580978 | None:intergenic | 45.0% | |
| ! | TTGTATTGGTGGGGTAGCTT+TGG | + | chr4_1:56580959-56580978 | Msa0557990:intron | 45.0% |
| ! | GGAGTGTCTCTCTCAGTATA+TGG | + | chr4_1:56581883-56581902 | Msa0557990:CDS | 45.0% |
| GAGTGTCCCTTAAGCCATTA+AGG | + | chr4_1:56579839-56579858 | Msa0557990:CDS | 45.0% | |
| ! | AGGGCACCTTAATGGCTTAA+GGG | - | chr4_1:56579848-56579867 | None:intergenic | 45.0% |
| TTGGTGGAACAAGGTAGTGA+AGG | + | chr4_1:56579895-56579914 | Msa0557990:CDS | 45.0% | |
| GGTAGTGAAGGTGAAGAAGA+TGG | + | chr4_1:56579907-56579926 | Msa0557990:CDS | 45.0% | |
| GTCTTGACTGTGTGAATTCG+TGG | - | chr4_1:56580488-56580507 | None:intergenic | 45.0% | |
| ! | GCGAATCCCTTTGTATTGGT+GGG | + | chr4_1:56580949-56580968 | Msa0557990:intron | 45.0% |
| ! | CGAATCCCTTTGTATTGGTG+GGG | + | chr4_1:56580950-56580969 | Msa0557990:intron | 45.0% |
| AGCTACCCCACCAATACAAA+GGG | - | chr4_1:56580958-56580977 | None:intergenic | 45.0% | |
| AAGCTACCCCACCAATACAA+AGG | - | chr4_1:56580959-56580978 | None:intergenic | 45.0% | |
| ! | TTGTATTGGTGGGGTAGCTT+TGG | + | chr4_1:56580959-56580978 | Msa0557990:intron | 45.0% |
| ! | GGAGTGTCTCTCTCAGTATA+TGG | + | chr4_1:56581883-56581902 | Msa0557990:CDS | 45.0% |
| !! | TGAATAAAAATAAAATATTT+GGG | - | chr4_1:56580989-56581008 | None:intergenic | 5.0% |
| !! | TTGAATAAAAATAAAATATT+TGG | - | chr4_1:56580990-56581009 | None:intergenic | 5.0% |
| !! | TGAATAAAAATAAAATATTT+GGG | - | chr4_1:56580989-56581008 | None:intergenic | 5.0% |
| !! | TTGAATAAAAATAAAATATT+TGG | - | chr4_1:56580990-56581009 | None:intergenic | 5.0% |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | chr4_1:56579849-56579868 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | chr4_1:56579856-56579875 | None:intergenic | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | chr4_1:56579985-56580004 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | chr4_1:56580724-56580743 | None:intergenic | 50.0% |
| AGGGGCGAATCCCTTTGTAT+TGG | + | chr4_1:56580945-56580964 | Msa0557990:intron | 50.0% | |
| GGCGAATCCCTTTGTATTGG+TGG | + | chr4_1:56580948-56580967 | Msa0557990:intron | 50.0% | |
| ! | AATTACTCTAGCTTCGCCGC+TGG | + | chr4_1:56581417-56581436 | Msa0557990:intron | 50.0% |
| AAAGGGTTGCAGGCACATGT+TGG | + | chr4_1:56581649-56581668 | Msa0557990:CDS | 50.0% | |
| ! | CAGGGCACCTTAATGGCTTA+AGG | - | chr4_1:56579849-56579868 | None:intergenic | 50.0% |
| ! | AATGGTGCAGGGCACCTTAA+TGG | - | chr4_1:56579856-56579875 | None:intergenic | 50.0% |
| !! | GTGAGCTCTGAGAATTCAGC+TGG | - | chr4_1:56579985-56580004 | None:intergenic | 50.0% |
| ! | CTTCATTTTGTGCACGTGGG+TGG | - | chr4_1:56580724-56580743 | None:intergenic | 50.0% |
| AGGGGCGAATCCCTTTGTAT+TGG | + | chr4_1:56580945-56580964 | Msa0557990:intron | 50.0% | |
| GGCGAATCCCTTTGTATTGG+TGG | + | chr4_1:56580948-56580967 | Msa0557990:intron | 50.0% | |
| ! | AATTACTCTAGCTTCGCCGC+TGG | + | chr4_1:56581417-56581436 | Msa0557990:intron | 50.0% |
| AAAGGGTTGCAGGCACATGT+TGG | + | chr4_1:56581649-56581668 | Msa0557990:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 56579775 | 56581940 | 56579775 | ID=Msa0557990;Name=Msa0557990 |
| chr4_1 | mRNA | 56579775 | 56581940 | 56579775 | ID=Msa0557990-mRNA-1;Parent=Msa0557990;Name=Msa0557990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|211 |
| chr4_1 | exon | 56579775 | 56580065 | 56579775 | ID=Msa0557990-mRNA-1:exon:16970;Parent=Msa0557990-mRNA-1 |
| chr4_1 | exon | 56581596 | 56581940 | 56581596 | ID=Msa0557990-mRNA-1:exon:16971;Parent=Msa0557990-mRNA-1 |
| chr4_1 | CDS | 56579775 | 56580065 | 56579775 | ID=Msa0557990-mRNA-1:cds;Parent=Msa0557990-mRNA-1 |
| chr4_1 | CDS | 56581596 | 56581940 | 56581596 | ID=Msa0557990-mRNA-1:cds;Parent=Msa0557990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
