AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0558280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558280 MtrunA17_Chr4g0047841 97.118 347 7 1 1 347 1 344 0.0 694
Msa0558280 MtrunA17_Chr2g0318101 53.368 386 106 14 1 346 1 352 3.73e-119 348
Msa0558280 MtrunA17_Chr7g0252971 64.211 190 42 3 10 192 3 173 1.17e-84 259
Msa0558280 MtrunA17_Chr7g0263931 52.245 245 92 4 14 255 10 232 7.15e-80 247
Msa0558280 MtrunA17_Chr2g0326361 63.842 177 45 2 15 191 14 171 1.66e-78 243
Msa0558280 MtrunA17_Chr5g0417791 62.147 177 46 2 14 190 2 157 6.71e-78 239
Msa0558280 MtrunA17_Chr3g0124761 65.922 179 36 3 14 191 6 160 8.37e-77 238
Msa0558280 MtrunA17_Chr4g0042561 64.943 174 40 3 15 188 9 161 9.69e-77 237
Msa0558280 MtrunA17_Chr2g0318081 63.388 183 42 3 15 197 16 173 4.91e-75 235
Msa0558280 MtrunA17_Chr8g0359921 63.934 183 43 3 15 197 14 173 1.99e-74 233
Msa0558280 MtrunA17_Chr8g0384721 58.128 203 48 5 14 207 6 180 4.68e-73 228
Msa0558280 MtrunA17_Chr3g0130731 59.474 190 46 4 14 196 6 171 3.52e-70 221
Msa0558280 MtrunA17_Chr5g0417001 38.689 305 141 6 15 314 14 277 1.16e-61 202
Msa0558280 MtrunA17_Chr6g0453131 51.596 188 70 4 15 199 15 184 1.22e-61 202
Msa0558280 MtrunA17_Chr8g0361731 51.136 176 72 1 17 192 16 177 6.78e-61 200
Msa0558280 MtrunA17_Chr7g0214071 55.056 178 52 3 14 191 14 163 1.24e-59 192
Msa0558280 MtrunA17_Chr6g0484441 50.549 182 63 3 15 196 5 159 6.06e-57 187
Msa0558280 MtrunA17_Chr2g0316971 51.685 178 65 3 14 191 22 178 1.48e-56 188
Msa0558280 MtrunA17_Chr2g0309891 41.736 242 112 5 15 251 6 223 3.95e-56 186
Msa0558280 MtrunA17_Chr4g0060931 49.718 177 66 3 15 191 17 170 2.65e-55 184
Msa0558280 MtrunA17_Chr3g0139331 48.603 179 63 2 15 191 11 162 5.49e-54 181
Msa0558280 MtrunA17_Chr5g0398971 44.878 205 78 6 14 211 6 182 1.68e-53 179
Msa0558280 MtrunA17_Chr3g0091921 50.847 177 64 4 15 191 16 169 1.80e-53 178
Msa0558280 MtrunA17_Chr4g0018391 43.627 204 82 5 14 211 6 182 8.20e-53 177
Msa0558280 MtrunA17_Chr1g0147421 48.315 178 62 3 15 189 27 177 1.05e-52 177
Msa0558280 MtrunA17_Chr4g0076731 46.842 190 72 4 12 198 51 214 1.95e-52 179
Msa0558280 MtrunA17_Chr6g0453451 47.191 178 71 4 14 191 19 173 2.80e-52 175
Msa0558280 MtrunA17_Chr6g0461661 48.295 176 70 2 15 190 18 172 3.46e-52 177
Msa0558280 MtrunA17_Chr3g0109821 45.972 211 82 6 15 223 6 186 1.48e-51 181
Msa0558280 MtrunA17_Chr5g0433781 48.718 195 70 5 15 207 6 172 1.74e-51 181
Msa0558280 MtrunA17_Chr7g0253011 48.370 184 72 4 15 196 17 179 1.77e-51 175
Msa0558280 MtrunA17_Chr6g0481091 47.159 176 66 3 15 188 6 156 5.39e-51 169
Msa0558280 MtrunA17_Chr1g0183741 45.763 177 69 2 15 191 10 159 6.32e-51 171
Msa0558280 MtrunA17_Chr5g0405211 43.367 196 74 5 1 193 1 162 6.68e-51 172
Msa0558280 MtrunA17_Chr5g0442771 46.857 175 74 3 17 188 20 178 9.53e-51 171
Msa0558280 MtrunA17_Chr2g0309331 43.889 180 72 3 15 191 10 163 1.24e-50 172
Msa0558280 MtrunA17_Chr7g0261411 46.512 172 65 2 15 186 10 154 2.01e-49 167
Msa0558280 MtrunA17_Chr4g0056541 42.268 194 78 4 14 204 6 168 2.43e-49 169
Msa0558280 MtrunA17_Chr5g0400461 55.072 138 55 2 15 145 6 143 2.63e-49 168
Msa0558280 MtrunA17_Chr8g0372121 44.444 180 70 4 15 191 6 158 4.30e-49 167
Msa0558280 MtrunA17_Chr4g0017921 46.927 179 64 5 15 190 8 158 4.71e-49 168
Msa0558280 MtrunA17_Chr1g0200561 41.667 216 89 6 3 213 12 195 5.71e-49 167
Msa0558280 MtrunA17_Chr2g0311651 47.090 189 81 5 17 198 24 200 8.00e-49 166
Msa0558280 MtrunA17_Chr2g0311661 43.961 207 96 5 17 220 23 212 9.49e-49 165
Msa0558280 MtrunA17_Chr8g0346001 43.085 188 88 5 6 190 6 177 3.24e-48 168
Msa0558280 MtrunA17_Chr2g0312321 43.979 191 81 4 15 205 11 175 8.41e-48 163
Msa0558280 MtrunA17_Chr8g0385991 46.629 178 75 3 14 191 13 170 1.28e-47 160
Msa0558280 MtrunA17_Chr4g0054791 53.901 141 62 2 15 152 6 146 1.51e-47 163
Msa0558280 MtrunA17_Chr7g0217721 45.665 173 84 2 18 190 22 184 2.04e-47 164
Msa0558280 MtrunA17_Chr3g0144271 53.793 145 63 2 15 158 23 164 2.16e-47 165
Msa0558280 MtrunA17_Chr7g0217711 52.985 134 57 2 18 147 22 153 5.81e-45 152
Msa0558280 MtrunA17_Chr3g0131911 47.486 179 73 4 15 191 14 173 5.86e-45 154
Msa0558280 MtrunA17_Chr1g0197351 46.067 178 75 3 15 190 42 200 1.74e-44 159
Msa0558280 MtrunA17_Chr4g0038751 42.021 188 79 4 5 191 6 164 2.86e-44 154
Msa0558280 MtrunA17_Chr5g0428991 45.856 181 69 5 15 192 25 179 4.71e-43 157
Msa0558280 MtrunA17_Chr1g0201021 53.030 132 58 2 17 146 21 150 6.25e-43 156
Msa0558280 MtrunA17_Chr3g0130101 42.614 176 74 4 15 188 7 157 1.98e-42 150
Msa0558280 MtrunA17_Chr3g0092671 45.810 179 66 6 17 191 7 158 3.43e-41 151
Msa0558280 MtrunA17_Chr3g0128151 43.956 182 73 5 15 193 22 177 8.45e-41 150
Msa0558280 MtrunA17_Chr8g0345671 49.315 146 69 4 11 152 6 150 2.00e-40 146
Msa0558280 MtrunA17_Chr1g0197361 43.258 178 72 4 17 191 10 161 3.51e-40 149
Msa0558280 MtrunA17_Chr8g0364791 50.000 132 62 2 13 142 4 133 2.21e-39 144
Msa0558280 MtrunA17_Chr3g0128111 41.243 177 77 4 18 192 45 196 1.28e-38 137
Msa0558280 MtrunA17_Chr4g0050701 39.655 174 80 2 15 188 11 159 1.47e-38 135
Msa0558280 MtrunA17_Chr8g0384201 48.485 132 64 2 13 142 4 133 2.79e-37 139
Msa0558280 MtrunA17_Chr4g0026141 40.201 199 87 7 15 204 5 180 6.09e-35 128
Msa0558280 MtrunA17_Chr8g0345691 43.662 142 76 3 14 152 11 151 3.75e-34 130
Msa0558280 MtrunA17_Chr2g0321631 36.957 230 106 9 16 229 5 211 6.02e-34 125
Msa0558280 MtrunA17_Chr8g0345711 43.939 132 70 3 12 140 9 139 6.08e-32 118
Msa0558280 MtrunA17_Chr3g0113001 46.617 133 49 4 60 192 10 120 9.68e-32 120
Msa0558280 MtrunA17_Chr8g0345731 45.865 133 63 4 15 140 24 154 3.62e-31 115
Msa0558280 MtrunA17_Chr7g0266701 35.912 181 91 5 15 189 4 165 4.87e-31 118
Msa0558280 MtrunA17_Chr2g0321741 50.000 98 46 2 44 140 21 116 2.82e-30 118
Msa0558280 MtrunA17_Chr8g0345721 39.053 169 65 5 13 144 28 195 8.08e-30 113
Msa0558280 MtrunA17_Chr8g0384351 39.080 174 61 6 15 188 10 138 7.55e-27 104
Msa0558280 MtrunA17_Chr7g0243371 56.790 81 35 0 68 148 17 97 2.36e-26 101
Msa0558280 MtrunA17_Chr8g0345701 41.259 143 64 5 15 140 7 146 1.01e-25 101
Msa0558280 MtrunA17_Chr8g0345741 40.476 126 69 4 26 146 2 126 3.49e-25 99.4
Msa0558280 MtrunA17_Chr3g0130321 35.227 176 89 7 15 187 7 160 5.40e-23 95.1
Msa0558280 MtrunA17_Chr3g0113031 42.735 117 38 4 78 190 3 94 9.40e-23 95.9
Msa0558280 MtrunA17_Chr7g0251651 34.965 143 87 4 15 155 18 156 4.98e-20 86.7
Msa0558280 MtrunA17_Chr7g0251661 34.615 130 79 4 15 142 10 135 1.30e-19 84.7
Msa0558280 MtrunA17_Chr7g0251671 35.556 135 79 5 13 144 8 137 2.11e-18 81.3
Msa0558280 MtrunA17_Chr4g0040541 31.443 194 106 9 13 187 46 231 1.47e-12 67.4
Msa0558280 MtrunA17_Chr1g0194791 61.702 47 15 2 17 61 48 93 1.36e-11 60.5
Msa0558280 MtrunA17_Chr8g0389661 34.437 151 73 8 15 142 47 194 1.54e-11 65.5
Msa0558280 MtrunA17_Chr8g0367761 27.746 173 106 6 1 157 54 223 4.13e-11 62.8
Msa0558280 MtrunA17_Chr4g0046431 27.586 174 107 6 1 158 54 224 6.00e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558280 AT1G61110.1 54.420 362 110 13 1 347 1 322 5.04e-112 329
Msa0558280 AT3G15510.1 50.386 389 122 14 1 346 1 361 1.35e-102 306
Msa0558280 AT3G04070.1 63.298 188 66 1 8 192 3 190 1.36e-83 258
Msa0558280 AT3G04070.2 62.766 188 51 3 8 192 3 174 4.16e-80 248
Msa0558280 AT1G69490.1 62.778 180 46 3 15 194 9 167 5.81e-79 243
Msa0558280 AT1G52880.1 51.546 291 101 7 19 292 21 288 1.03e-77 241
Msa0558280 AT4G27410.2 63.483 178 40 3 15 192 14 166 3.80e-75 234
Msa0558280 AT1G01720.1 64.246 179 42 2 14 192 6 162 9.97e-75 233
Msa0558280 AT1G52890.1 64.607 178 38 4 15 192 14 166 3.08e-74 232
Msa0558280 AT1G77450.1 64.205 176 38 3 14 188 9 160 5.08e-74 229
Msa0558280 AT5G08790.1 56.364 220 70 5 14 231 6 201 5.74e-74 230
Msa0558280 AT3G15500.1 64.607 178 38 3 15 192 14 166 2.04e-73 230
Msa0558280 AT5G63790.1 55.000 220 73 4 14 232 49 243 5.45e-73 229
Msa0558280 AT5G63790.2 55.000 220 73 4 14 232 59 253 6.19e-73 229
Msa0558280 AT4G27410.3 57.949 195 40 4 15 192 14 183 8.67e-71 223
Msa0558280 AT5G39820.1 52.432 185 80 4 17 198 22 201 1.96e-62 202
Msa0558280 AT1G26870.1 50.556 180 75 1 15 194 16 181 1.44e-61 202
Msa0558280 AT5G13180.1 53.933 178 55 3 14 191 13 163 6.28e-58 188
Msa0558280 AT5G39610.1 50.265 189 70 5 12 199 17 182 1.38e-57 188
Msa0558280 AT1G76420.1 50.286 175 63 2 15 189 22 172 8.52e-57 188
Msa0558280 AT5G18270.2 49.741 193 75 4 15 207 21 191 1.99e-56 187
Msa0558280 AT3G18400.1 49.721 179 64 3 14 192 4 156 4.34e-56 185
Msa0558280 AT5G61430.1 52.571 175 60 4 15 189 16 167 8.84e-56 185
Msa0558280 AT5G53950.1 49.718 177 68 2 14 190 16 171 1.06e-55 186
Msa0558280 AT5G18270.1 48.705 193 77 4 15 207 21 191 1.62e-55 184
Msa0558280 AT5G07680.2 52.571 175 60 4 15 189 3 154 1.93e-55 184
Msa0558280 AT5G07680.1 52.571 175 60 4 15 189 17 168 2.30e-55 184
Msa0558280 AT2G24430.2 48.876 178 67 2 15 192 16 169 3.21e-55 183
Msa0558280 AT2G24430.1 48.876 178 67 2 15 192 16 169 3.21e-55 183
Msa0558280 AT3G29035.1 63.281 128 45 1 15 142 24 149 1.03e-54 182
Msa0558280 AT3G04060.1 50.838 179 66 3 15 193 20 176 4.11e-54 181
Msa0558280 AT3G03200.1 45.411 207 83 5 15 219 6 184 1.04e-53 184
Msa0558280 AT3G15170.1 48.295 176 70 2 15 190 20 174 1.63e-53 179
Msa0558280 AT2G33480.2 50.000 184 56 5 14 193 14 165 6.88e-53 176
Msa0558280 AT2G02450.1 60.317 126 49 1 17 142 53 177 1.51e-52 178
Msa0558280 AT2G02450.2 60.317 126 49 1 17 142 53 177 1.53e-52 179
Msa0558280 AT2G33480.1 50.543 184 57 6 14 193 14 167 5.22e-52 173
Msa0558280 AT5G17260.1 44.845 194 77 4 15 206 6 171 2.79e-51 177
Msa0558280 AT1G12260.2 46.629 178 65 4 14 188 6 156 3.27e-51 174
Msa0558280 AT4G36160.2 45.550 191 69 6 1 188 5 163 4.54e-51 174
Msa0558280 AT5G46590.2 55.034 149 59 3 7 153 3 145 4.73e-51 171
Msa0558280 AT4G36160.1 45.550 191 69 6 1 188 1 159 4.94e-51 174
Msa0558280 AT4G36160.3 45.550 191 69 6 1 188 1 159 4.94e-51 174
Msa0558280 AT1G12260.1 46.629 178 65 4 14 188 6 156 5.71e-51 174
Msa0558280 AT5G62380.2 46.114 193 69 6 14 199 6 170 6.82e-51 173
Msa0558280 AT5G62380.1 46.114 193 69 6 14 199 6 170 6.82e-51 173
Msa0558280 AT5G46590.1 55.034 149 59 3 7 153 3 145 7.03e-51 171
Msa0558280 AT1G71930.2 40.865 208 91 4 15 219 9 187 7.64e-51 172
Msa0558280 AT1G71930.1 40.865 208 91 4 15 219 9 187 7.64e-51 172
Msa0558280 AT1G79580.3 45.251 179 68 3 15 190 17 168 1.54e-50 172
Msa0558280 AT1G79580.5 45.251 179 68 3 15 190 17 168 1.54e-50 172
Msa0558280 AT1G79580.4 45.251 179 68 3 15 190 17 168 1.54e-50 172
Msa0558280 AT1G79580.2 45.251 179 68 3 15 190 17 168 1.54e-50 172
Msa0558280 AT1G79580.1 45.251 179 68 3 15 190 17 168 1.54e-50 172
Msa0558280 AT5G66300.1 43.478 207 80 6 8 207 9 185 2.76e-50 170
Msa0558280 AT2G18060.3 45.109 184 67 5 8 188 6 158 4.66e-50 171
Msa0558280 AT2G18060.1 45.109 184 67 5 8 188 6 158 4.66e-50 171
Msa0558280 AT2G43000.1 42.453 212 92 5 17 222 20 207 5.08e-50 168
Msa0558280 AT1G65910.1 40.889 225 97 6 15 236 6 197 5.38e-50 177
Msa0558280 AT4G17980.1 54.795 146 57 3 7 148 3 143 1.59e-49 167
Msa0558280 AT4G17980.2 54.795 146 57 3 7 148 3 143 1.80e-49 167
Msa0558280 AT3G17730.1 47.727 176 65 6 15 188 6 156 2.59e-49 166
Msa0558280 AT1G56010.2 42.188 192 88 4 15 205 19 188 5.36e-49 167
Msa0558280 AT1G62700.1 43.784 185 74 4 15 196 7 164 8.38e-49 169
Msa0558280 AT1G62700.2 43.784 185 74 4 15 196 7 164 8.38e-49 169
Msa0558280 AT3G10480.1 45.789 190 77 3 3 190 15 180 2.36e-48 169
Msa0558280 AT4G10350.1 45.810 179 69 4 15 190 9 162 3.22e-48 166
Msa0558280 AT3G10480.2 45.789 190 76 4 3 190 15 179 5.23e-48 168
Msa0558280 AT1G33280.1 45.251 179 67 4 15 190 8 158 6.17e-48 164
Msa0558280 AT1G54330.1 47.159 176 63 4 15 188 6 153 4.32e-47 162
Msa0558280 AT3G12977.1 44.253 174 73 3 15 188 18 167 6.30e-47 160
Msa0558280 AT3G10490.1 43.684 190 81 3 3 190 15 180 7.76e-47 159
Msa0558280 AT3G61910.1 42.541 181 87 4 14 190 10 177 2.06e-46 161
Msa0558280 AT2G46770.1 41.969 193 97 5 1 190 2 182 2.16e-46 162
Msa0558280 AT4G28530.1 42.347 196 70 3 15 194 10 178 2.16e-46 161
Msa0558280 AT1G32770.1 42.458 179 85 4 15 190 16 179 2.60e-46 161
Msa0558280 AT1G32510.1 40.500 200 90 3 15 207 6 183 3.34e-46 159
Msa0558280 AT3G10500.1 45.251 179 71 3 15 191 9 162 4.94e-46 164
Msa0558280 AT3G10490.2 43.684 190 81 3 3 190 15 180 2.88e-45 160
Msa0558280 AT3G12910.1 47.778 180 77 6 17 192 23 189 2.58e-44 154
Msa0558280 AT5G04410.1 45.251 179 71 4 15 191 9 162 3.75e-44 160
Msa0558280 AT1G34180.3 43.617 188 97 4 1 181 2 187 4.02e-44 157
Msa0558280 AT2G17040.1 39.151 212 92 5 17 224 8 186 4.22e-44 153
Msa0558280 AT1G33060.2 46.995 183 70 5 15 195 24 181 1.13e-43 159
Msa0558280 AT1G33060.1 46.995 183 70 5 15 195 24 181 1.27e-43 159
Msa0558280 AT1G34180.1 43.617 188 97 4 1 181 2 187 1.75e-43 158
Msa0558280 AT1G34190.1 45.349 172 85 4 17 181 18 187 2.68e-43 157
Msa0558280 AT3G10480.3 39.013 223 77 3 3 190 15 213 4.07e-43 156
Msa0558280 AT1G34180.4 41.000 200 97 4 1 181 2 199 2.09e-42 153
Msa0558280 AT4G35580.2 56.589 129 52 2 15 141 9 135 4.16e-42 154
Msa0558280 AT4G35580.1 56.589 129 52 2 15 141 9 135 4.61e-42 153
Msa0558280 AT4G35580.3 56.589 129 52 2 15 141 9 135 4.68e-42 154
Msa0558280 AT1G34180.2 41.000 200 97 4 1 181 2 199 1.06e-41 153
Msa0558280 AT2G27300.1 51.181 127 59 2 15 140 14 138 1.58e-41 148
Msa0558280 AT5G24590.2 55.039 129 55 2 15 141 13 140 2.06e-41 150
Msa0558280 AT3G49530.2 51.128 133 62 2 15 145 13 144 1.26e-40 147
Msa0558280 AT3G49530.1 51.128 133 62 2 15 145 13 144 2.16e-40 148
Msa0558280 AT5G09330.5 51.908 131 59 2 14 142 5 133 2.22e-40 148
Msa0558280 AT5G09330.2 51.908 131 59 2 14 142 5 133 2.22e-40 148
Msa0558280 AT5G09330.4 51.908 131 59 2 14 142 5 133 2.22e-40 148
Msa0558280 AT5G09330.3 51.908 131 59 2 14 142 5 133 2.22e-40 148
Msa0558280 AT5G09330.1 51.908 131 59 2 14 142 5 133 2.22e-40 148
Msa0558280 AT5G64060.1 49.231 130 62 2 15 142 6 133 1.90e-39 143
Msa0558280 AT5G64530.1 42.135 178 82 4 15 192 3 159 1.46e-38 136
Msa0558280 AT3G44290.2 41.772 158 79 3 17 163 16 171 1.73e-37 134
Msa0558280 AT5G22290.1 43.165 139 76 2 3 140 9 145 3.29e-37 137
Msa0558280 AT3G44290.1 46.875 128 65 2 17 143 16 141 8.04e-37 135
Msa0558280 AT1G32870.2 56.923 130 50 3 15 142 10 135 1.44e-36 138
Msa0558280 AT1G32870.1 56.923 130 50 3 15 142 10 135 1.54e-36 138
Msa0558280 AT1G32870.3 56.923 130 50 3 15 142 46 171 3.42e-36 138
Msa0558280 AT5G64530.2 49.219 128 53 2 15 142 3 118 1.48e-35 127
Msa0558280 AT5G04395.1 39.610 154 79 2 3 142 16 169 4.79e-34 124
Msa0558280 AT5G61430.2 50.794 126 39 4 64 189 2 104 4.99e-33 124
Msa0558280 AT3G44350.2 34.091 220 104 8 14 222 4 193 3.70e-32 120
Msa0558280 AT1G56010.1 40.845 142 62 3 64 205 2 121 3.42e-31 119
Msa0558280 AT3G04420.2 44.186 129 66 3 16 140 4 130 1.92e-29 115
Msa0558280 AT3G04420.1 44.186 129 66 3 16 140 4 130 4.37e-29 115
Msa0558280 AT3G44350.1 40.876 137 71 4 14 143 4 137 4.45e-29 110
Msa0558280 AT5G22380.1 37.017 181 86 6 18 192 8 166 8.05e-29 112
Msa0558280 AT4G28530.2 38.298 188 91 5 15 180 10 194 1.63e-28 113
Msa0558280 AT4G01550.1 41.727 139 77 3 18 152 7 145 1.76e-28 115
Msa0558280 AT3G12977.2 43.200 125 47 3 64 188 14 114 6.82e-28 109
Msa0558280 AT2G33480.3 46.923 130 38 5 68 193 8 110 1.26e-27 108
Msa0558280 AT1G02230.1 42.308 130 67 4 16 140 4 130 1.96e-27 110
Msa0558280 AT4G10350.2 45.528 123 42 3 68 190 18 115 2.73e-27 109
Msa0558280 AT4G01520.1 43.182 132 70 4 16 142 5 136 7.33e-25 102
Msa0558280 AT4G01540.3 43.846 130 68 4 18 142 7 136 3.04e-24 103
Msa0558280 AT4G01540.4 43.846 130 68 4 18 142 7 136 4.04e-24 102
Msa0558280 AT1G02250.1 41.538 130 68 4 16 140 4 130 4.09e-24 102
Msa0558280 AT4G01540.1 43.846 130 68 4 18 142 7 136 5.68e-24 102
Msa0558280 AT4G01540.2 43.846 130 68 4 18 142 7 136 6.31e-24 102
Msa0558280 AT1G02220.1 40.310 129 68 4 16 140 4 127 1.21e-22 98.2
Msa0558280 AT5G14000.2 35.664 143 84 4 15 153 15 153 6.96e-21 88.2
Msa0558280 AT5G14000.1 36.923 130 76 3 15 142 15 140 4.45e-20 87.4
Msa0558280 AT2G43000.2 36.842 152 66 5 77 222 2 129 1.02e-19 86.3
Msa0558280 AT1G01010.1 38.028 142 72 7 18 146 6 144 1.32e-19 89.7
Msa0558280 AT3G56530.1 34.286 140 87 3 15 151 52 189 3.90e-17 81.6
Msa0558280 AT3G55210.1 32.474 194 88 9 15 194 11 175 8.25e-17 80.1
Msa0558280 AT5G50820.1 32.450 151 86 5 14 162 16 152 2.05e-16 77.0
Msa0558280 AT3G10490.4 37.864 103 40 2 88 190 2 80 5.11e-15 75.5
Msa0558280 AT3G10490.3 37.864 103 40 2 88 190 2 80 5.11e-15 75.5
Msa0558280 AT2G18060.2 38.542 96 32 3 93 188 2 70 1.40e-14 73.6
Msa0558280 AT3G04430.1 35.714 140 76 5 21 148 6 143 1.30e-13 69.3
Msa0558280 AT1G28470.1 31.973 147 79 7 13 142 75 217 9.73e-13 68.6
Msa0558280 AT1G25580.1 32.075 159 89 7 13 158 56 208 1.98e-12 68.6
Msa0558280 AT5G56620.3 31.613 155 76 6 15 142 43 194 2.53e-12 67.8
Msa0558280 AT5G56620.2 31.613 155 76 6 15 142 43 194 2.78e-12 67.8
Msa0558280 AT4G29230.2 34.416 154 74 8 15 144 47 197 5.02e-12 67.4
Msa0558280 AT4G29230.1 34.416 154 74 8 15 144 48 198 5.12e-12 67.4
Msa0558280 AT5G56620.1 31.613 155 76 6 15 142 43 194 5.30e-12 67.0
Msa0558280 AT4G29230.3 32.934 167 85 8 15 157 48 211 9.88e-12 66.2
Msa0558280 AT4G28500.1 31.902 163 91 6 13 158 57 216 6.52e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACTTCCGGACATAAAT+TGG 0.154420 4_1:+56908748 Msa0558280:CDS
CATGCCAAGGCCACTCTTAA+TGG 0.200176 4_1:+56908311 Msa0558280:CDS
CAAAAGGAGTTAAAACTAAT+TGG 0.207995 4_1:+56907749 Msa0558280:CDS
CCTAATAGGGCTGCTACTTC+TGG 0.215436 4_1:+56907625 Msa0558280:CDS
TTTCATCAAAATTCAATTCT+TGG 0.231872 4_1:+56908693 Msa0558280:CDS
CAAATGGAGCAAGGCCTAAT+AGG 0.244485 4_1:+56907611 Msa0558280:CDS
GTTATAGGTAAAGCAAGTTT+TGG 0.260496 4_1:+56907544 Msa0558280:intron
CTATTAGGCCTTGCTCCATT+TGG 0.269221 4_1:-56907610 None:intergenic
GAATTCTTCTTGTTATTGTT+TGG 0.278889 4_1:-56907865 None:intergenic
TAAATGCATCATCACAGTTT+TGG 0.311946 4_1:+56908535 Msa0558280:CDS
TTCATCAAAATTCAATTCTT+GGG 0.336065 4_1:+56908694 Msa0558280:CDS
GCATTTAGTGCACGTTTCAT+AGG 0.337891 4_1:-56908519 None:intergenic
TATTAGGCCTTGCTCCATTT+GGG 0.342599 4_1:-56907609 None:intergenic
TCTTCAAGCAAACGGTTTCA+TGG 0.349803 4_1:+56908585 Msa0558280:CDS
ATCGGAACCCTGGTGGTAGG+TGG 0.351200 4_1:-56907244 None:intergenic
CCAGAAGTAGCAGCCCTATT+AGG 0.356475 4_1:-56907625 None:intergenic
AATGATCACGGAATGCAAAA+TGG 0.381179 4_1:+56908447 Msa0558280:CDS
AATTCAATTCTTGGGTCTGT+TGG 0.387343 4_1:+56908702 Msa0558280:CDS
TTCTTCTTGTTATTGTTTGG+AGG 0.403734 4_1:-56907862 None:intergenic
TCTTCAAGAAGCACAAGTTA+TGG 0.409732 4_1:+56908384 Msa0558280:CDS
CTTCATCTGTTGGGTGGAAT+CGG 0.411927 4_1:-56907262 None:intergenic
TGATCCATTAAGAGTGGCCT+TGG 0.412912 4_1:-56908315 None:intergenic
TTCCCATCAGATGTTAATAT+AGG 0.417975 4_1:-56907676 None:intergenic
GGAACCCTGGTGGTAGGTGG+GGG 0.435552 4_1:-56907241 None:intergenic
GGGCTGCTACTTCTGGGTAT+TGG 0.442139 4_1:+56907632 Msa0558280:CDS
AATGATGACAATTTCTTCGA+TGG 0.445563 4_1:+56908414 Msa0558280:CDS
AAATGGAGCAAGGCCTAATA+GGG 0.447510 4_1:+56907612 Msa0558280:CDS
GCTTCTTGAAGATGAATGTT+TGG 0.449692 4_1:-56908373 None:intergenic
AAGCCTATATTAACATCTGA+TGG 0.457224 4_1:+56907673 Msa0558280:CDS
TCGGAACCCTGGTGGTAGGT+GGG 0.457829 4_1:-56907243 None:intergenic
GAGATCAATTTCTGCTATGA+TGG 0.458317 4_1:-56907339 None:intergenic
AACTAGTTCCAATTTATGTC+CGG 0.458531 4_1:-56908756 None:intergenic
CTAATAGGGCTGCTACTTCT+GGG 0.460184 4_1:+56907626 Msa0558280:CDS
TTCATACTTGGGAGTTCCCA+TGG 0.461026 4_1:-56907374 None:intergenic
GAGGCAACAATTTCAACTTC+CGG 0.462175 4_1:+56908737 Msa0558280:CDS
TGGAATGAAACAGGGTCACC+AGG 0.466947 4_1:+56908555 Msa0558280:CDS
CGGAACCCTGGTGGTAGGTG+GGG 0.469074 4_1:-56907242 None:intergenic
CAACGAGTTCTTCATCTGTT+GGG 0.474906 4_1:-56907271 None:intergenic
ATTTCTGCTATGATGGCTAC+TGG 0.480845 4_1:-56907332 None:intergenic
TCTGGGTATTGGAAAGCTAC+TGG 0.487868 4_1:+56907643 Msa0558280:CDS
ATTGGATTATGCATGAGTAT+AGG 0.493789 4_1:+56907767 Msa0558280:CDS
CATTTAGTGCACGTTTCATA+GGG 0.495376 4_1:-56908518 None:intergenic
GGTCATCTTCTTCAAGCAAA+CGG 0.495966 4_1:+56908577 Msa0558280:CDS
TCTGATGGGAATCAGAAAGT+TGG 0.499516 4_1:+56907688 Msa0558280:CDS
ATTCTTGGGTCTGTTGGAGA+TGG 0.501582 4_1:+56908708 Msa0558280:CDS
ACAACGAGTTCTTCATCTGT+TGG 0.524281 4_1:-56907272 None:intergenic
ATCTCTACAAATTCGACCCA+TGG 0.531070 4_1:+56907357 Msa0558280:CDS
AGGGATAGAAAATACCCAAA+TGG 0.534980 4_1:+56907595 Msa0558280:CDS
TATGGAGGGAAGCCACCAAA+AGG 0.535327 4_1:+56907733 Msa0558280:CDS
TGATGAAAAGTTGTGTTTGG+TGG 0.540337 4_1:-56908678 None:intergenic
GCTATGATGGCTACTGGAAG+AGG 0.544027 4_1:-56907326 None:intergenic
AAGTTGTGTTTGGTGGAAGC+TGG 0.544443 4_1:-56908671 None:intergenic
TGTGCATATACATACCCTTA+GGG 0.545490 4_1:-56907887 None:intergenic
GGTTGTGACACAAACTCAAA+GGG 0.556107 4_1:+56908468 Msa0558280:CDS
TTGTTTGGAGGATGATCAGA+AGG 0.562065 4_1:-56907850 None:intergenic
GGAATCGGAACCCTGGTGGT+AGG 0.568875 4_1:-56907247 None:intergenic
GGATGATCAGAAGGCAGAGG+AGG 0.572911 4_1:-56907841 None:intergenic
GGAGGATGATCAGAAGGCAG+AGG 0.572927 4_1:-56907844 None:intergenic
ATAACAAGAAGAATTCCCTA+AGG 0.573041 4_1:+56907872 Msa0558280:CDS
TGGTTGTGACACAAACTCAA+AGG 0.577669 4_1:+56908467 Msa0558280:CDS
TCATACTTGGGAGTTCCCAT+GGG 0.586431 4_1:-56907373 None:intergenic
CATTAAGAGTGGCCTTGGCA+TGG 0.590428 4_1:-56908310 None:intergenic
AGCCTATATTAACATCTGAT+GGG 0.592875 4_1:+56907674 Msa0558280:CDS
CGAGTTCTTCATCTGTTGGG+TGG 0.593385 4_1:-56907268 None:intergenic
GTTGGGTGGAATCGGAACCC+TGG 0.600934 4_1:-56907254 None:intergenic
TAGAATAAGTAGCAATGCTG+AGG 0.611678 4_1:+56908620 Msa0558280:CDS
GCAACAGTAGCACCATGCCA+AGG 0.616723 4_1:+56908298 Msa0558280:CDS
GAAAATACCCAAATGGAGCA+AGG 0.627854 4_1:+56907602 Msa0558280:CDS
GGAATCTTAGCAAATGATCA+CGG 0.629624 4_1:+56908435 Msa0558280:CDS
TAACAAGAAGAATTCCCTAA+GGG 0.639219 4_1:+56907873 Msa0558280:CDS
TCTCTACAAATTCGACCCAT+GGG 0.642051 4_1:+56907358 Msa0558280:CDS
CTGTTGGAGATGGTGTAATG+AGG 0.645707 4_1:+56908718 Msa0558280:CDS
TCATATTGATCCATTAAGAG+TGG 0.647276 4_1:-56908321 None:intergenic
GGAATGAAACAGGGTCACCA+GGG 0.654300 4_1:+56908556 Msa0558280:CDS
GGGTGGAATCGGAACCCTGG+TGG 0.662428 4_1:-56907251 None:intergenic
TTGCTTGAAGAAGATGACCC+TGG 0.699438 4_1:-56908573 None:intergenic
TGTGACACAAACTCAAAGGG+TGG 0.701015 4_1:+56908471 Msa0558280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATGAATTAATAAATAAT+TGG + chr4_1:56907938-56907957 Msa0558280:intron 10.0%
!!! TTTTCTTTAATATAAAAACA+TGG - chr4_1:56908209-56908228 None:intergenic 10.0%
!!! TTAACATTTTTTTATTGTAT+TGG + chr4_1:56908230-56908249 Msa0558280:intron 10.0%
!! TTCATGAATTAATAAATAAT+TGG + chr4_1:56907938-56907957 Msa0558280:intron 10.0%
!!! TTTTCTTTAATATAAAAACA+TGG - chr4_1:56908209-56908228 None:intergenic 10.0%
!!! TTAACATTTTTTTATTGTAT+TGG + chr4_1:56908230-56908249 Msa0558280:intron 10.0%
!! AATTAATAAATAATTGGACA+TGG + chr4_1:56907944-56907963 Msa0558280:intron 15.0%
!!! TTTTTTTATTGTATTGGTTT+TGG + chr4_1:56908236-56908255 Msa0558280:intron 15.0%
!! AATTAATAAATAATTGGACA+TGG + chr4_1:56907944-56907963 Msa0558280:intron 15.0%
!!! TTTTTTTATTGTATTGGTTT+TGG + chr4_1:56908236-56908255 Msa0558280:intron 15.0%
!! AAAATTTCTTATGCAAAACA+AGG - chr4_1:56907465-56907484 None:intergenic 20.0%
!! AAAAAAAACAGAGAAAAAAC+AGG - chr4_1:56907514-56907533 None:intergenic 20.0%
!! TTTCATCAAAATTCAATTCT+TGG + chr4_1:56908693-56908712 Msa0558280:CDS 20.0%
!! TTCATCAAAATTCAATTCTT+GGG + chr4_1:56908694-56908713 Msa0558280:CDS 20.0%
!! AAAATTTCTTATGCAAAACA+AGG - chr4_1:56907465-56907484 None:intergenic 20.0%
!! AAAAAAAACAGAGAAAAAAC+AGG - chr4_1:56907514-56907533 None:intergenic 20.0%
!! TTTCATCAAAATTCAATTCT+TGG + chr4_1:56908693-56908712 Msa0558280:CDS 20.0%
!! TTCATCAAAATTCAATTCTT+GGG + chr4_1:56908694-56908713 Msa0558280:CDS 20.0%
! TGTGAAAAAGTTTCATACTT+GGG - chr4_1:56907388-56907407 None:intergenic 25.0%
! AATGGATGAAAAGATGAAAT+GGG - chr4_1:56907412-56907431 None:intergenic 25.0%
! AAATGGATGAAAAGATGAAA+TGG - chr4_1:56907413-56907432 None:intergenic 25.0%
! AAACAAGGAACATAAAATCT+AGG - chr4_1:56907450-56907469 None:intergenic 25.0%
! GAAAAAACAGGACAATATTT+CGG - chr4_1:56907502-56907521 None:intergenic 25.0%
!! TTATAGGTAAAGCAAGTTTT+GGG + chr4_1:56907545-56907564 Msa0558280:intron 25.0%
!!! AAGAAAGCACTTGTTTTTTA+TGG + chr4_1:56907715-56907734 Msa0558280:CDS 25.0%
!!! CAATTAGTTTTAACTCCTTT+TGG - chr4_1:56907751-56907770 None:intergenic 25.0%
! CAAAAGGAGTTAAAACTAAT+TGG + chr4_1:56907749-56907768 Msa0558280:CDS 25.0%
!!! GAATTCTTCTTGTTATTGTT+TGG - chr4_1:56907868-56907887 None:intergenic 25.0%
!!! TGTTGCTTTTCTTGTATATT+CGG - chr4_1:56908284-56908303 None:intergenic 25.0%
!! TTTTGATGAAAAGTTGTGTT+TGG - chr4_1:56908684-56908703 None:intergenic 25.0%
! TGTGAAAAAGTTTCATACTT+GGG - chr4_1:56907388-56907407 None:intergenic 25.0%
! AATGGATGAAAAGATGAAAT+GGG - chr4_1:56907412-56907431 None:intergenic 25.0%
! AAATGGATGAAAAGATGAAA+TGG - chr4_1:56907413-56907432 None:intergenic 25.0%
! AAACAAGGAACATAAAATCT+AGG - chr4_1:56907450-56907469 None:intergenic 25.0%
! GAAAAAACAGGACAATATTT+CGG - chr4_1:56907502-56907521 None:intergenic 25.0%
!! TTATAGGTAAAGCAAGTTTT+GGG + chr4_1:56907545-56907564 Msa0558280:intron 25.0%
!!! AAGAAAGCACTTGTTTTTTA+TGG + chr4_1:56907715-56907734 Msa0558280:CDS 25.0%
!!! CAATTAGTTTTAACTCCTTT+TGG - chr4_1:56907751-56907770 None:intergenic 25.0%
! CAAAAGGAGTTAAAACTAAT+TGG + chr4_1:56907749-56907768 Msa0558280:CDS 25.0%
!!! GAATTCTTCTTGTTATTGTT+TGG - chr4_1:56907868-56907887 None:intergenic 25.0%
!!! TGTTGCTTTTCTTGTATATT+CGG - chr4_1:56908284-56908303 None:intergenic 25.0%
!! TTTTGATGAAAAGTTGTGTT+TGG - chr4_1:56908684-56908703 None:intergenic 25.0%
GTGTGAAAAAGTTTCATACT+TGG - chr4_1:56907389-56907408 None:intergenic 30.0%
ATGGATGAAAAGATGAAATG+GGG - chr4_1:56907411-56907430 None:intergenic 30.0%
! GAACATAAAATCTAGGATGT+GGG - chr4_1:56907443-56907462 None:intergenic 30.0%
! GTTATAGGTAAAGCAAGTTT+TGG + chr4_1:56907544-56907563 Msa0558280:intron 30.0%
! TATAGGTAAAGCAAGTTTTG+GGG + chr4_1:56907546-56907565 Msa0558280:intron 30.0%
AAGCCTATATTAACATCTGA+TGG + chr4_1:56907673-56907692 Msa0558280:CDS 30.0%
AGCCTATATTAACATCTGAT+GGG + chr4_1:56907674-56907693 Msa0558280:CDS 30.0%
TTCCCATCAGATGTTAATAT+AGG - chr4_1:56907679-56907698 None:intergenic 30.0%
!!! AAAGCACTTGTTTTTTATGG+AGG + chr4_1:56907718-56907737 Msa0558280:CDS 30.0%
!!! AAGCACTTGTTTTTTATGGA+GGG + chr4_1:56907719-56907738 Msa0558280:CDS 30.0%
!!! TTAGTTTTAACTCCTTTTGG+TGG - chr4_1:56907748-56907767 None:intergenic 30.0%
ATTGGATTATGCATGAGTAT+AGG + chr4_1:56907767-56907786 Msa0558280:CDS 30.0%
!! TTCTTCTTGTTATTGTTTGG+AGG - chr4_1:56907865-56907884 None:intergenic 30.0%
ATAACAAGAAGAATTCCCTA+AGG + chr4_1:56907872-56907891 Msa0558280:CDS 30.0%
TAACAAGAAGAATTCCCTAA+GGG + chr4_1:56907873-56907892 Msa0558280:CDS 30.0%
ATTCATGAAACAAATGCACA+TGG - chr4_1:56907927-56907946 None:intergenic 30.0%
AAGATCAGACCATTCAAAAA+AGG - chr4_1:56907998-56908017 None:intergenic 30.0%
ATATTCACAGCTATGAAACA+CGG + chr4_1:56908039-56908058 Msa0558280:intron 30.0%
ACCAGTGTAATTAAATGTGT+TGG + chr4_1:56908115-56908134 Msa0558280:intron 30.0%
CCAGTGTAATTAAATGTGTT+GGG + chr4_1:56908116-56908135 Msa0558280:intron 30.0%
CAGTGTAATTAAATGTGTTG+GGG + chr4_1:56908117-56908136 Msa0558280:intron 30.0%
AATGACTATGCAATGAAACA+CGG - chr4_1:56908183-56908202 None:intergenic 30.0%
TCATATTGATCCATTAAGAG+TGG - chr4_1:56908324-56908343 None:intergenic 30.0%
!!! GGAGTTTTGTTGCATATTAT+AGG - chr4_1:56908355-56908374 None:intergenic 30.0%
AATGATGACAATTTCTTCGA+TGG + chr4_1:56908414-56908433 Msa0558280:CDS 30.0%
! TAAATGCATCATCACAGTTT+TGG + chr4_1:56908535-56908554 Msa0558280:CDS 30.0%
GTGTGAAAAAGTTTCATACT+TGG - chr4_1:56907389-56907408 None:intergenic 30.0%
ATGGATGAAAAGATGAAATG+GGG - chr4_1:56907411-56907430 None:intergenic 30.0%
! GAACATAAAATCTAGGATGT+GGG - chr4_1:56907443-56907462 None:intergenic 30.0%
! GTTATAGGTAAAGCAAGTTT+TGG + chr4_1:56907544-56907563 Msa0558280:intron 30.0%
! TATAGGTAAAGCAAGTTTTG+GGG + chr4_1:56907546-56907565 Msa0558280:intron 30.0%
AAGCCTATATTAACATCTGA+TGG + chr4_1:56907673-56907692 Msa0558280:CDS 30.0%
AGCCTATATTAACATCTGAT+GGG + chr4_1:56907674-56907693 Msa0558280:CDS 30.0%
TTCCCATCAGATGTTAATAT+AGG - chr4_1:56907679-56907698 None:intergenic 30.0%
!!! AAAGCACTTGTTTTTTATGG+AGG + chr4_1:56907718-56907737 Msa0558280:CDS 30.0%
!!! AAGCACTTGTTTTTTATGGA+GGG + chr4_1:56907719-56907738 Msa0558280:CDS 30.0%
!!! TTAGTTTTAACTCCTTTTGG+TGG - chr4_1:56907748-56907767 None:intergenic 30.0%
ATTGGATTATGCATGAGTAT+AGG + chr4_1:56907767-56907786 Msa0558280:CDS 30.0%
!! TTCTTCTTGTTATTGTTTGG+AGG - chr4_1:56907865-56907884 None:intergenic 30.0%
ATAACAAGAAGAATTCCCTA+AGG + chr4_1:56907872-56907891 Msa0558280:CDS 30.0%
TAACAAGAAGAATTCCCTAA+GGG + chr4_1:56907873-56907892 Msa0558280:CDS 30.0%
ATTCATGAAACAAATGCACA+TGG - chr4_1:56907927-56907946 None:intergenic 30.0%
AAGATCAGACCATTCAAAAA+AGG - chr4_1:56907998-56908017 None:intergenic 30.0%
ATATTCACAGCTATGAAACA+CGG + chr4_1:56908039-56908058 Msa0558280:intron 30.0%
ACCAGTGTAATTAAATGTGT+TGG + chr4_1:56908115-56908134 Msa0558280:intron 30.0%
CCAGTGTAATTAAATGTGTT+GGG + chr4_1:56908116-56908135 Msa0558280:intron 30.0%
CAGTGTAATTAAATGTGTTG+GGG + chr4_1:56908117-56908136 Msa0558280:intron 30.0%
AATGACTATGCAATGAAACA+CGG - chr4_1:56908183-56908202 None:intergenic 30.0%
TCATATTGATCCATTAAGAG+TGG - chr4_1:56908324-56908343 None:intergenic 30.0%
!!! GGAGTTTTGTTGCATATTAT+AGG - chr4_1:56908355-56908374 None:intergenic 30.0%
AATGATGACAATTTCTTCGA+TGG + chr4_1:56908414-56908433 Msa0558280:CDS 30.0%
! TAAATGCATCATCACAGTTT+TGG + chr4_1:56908535-56908554 Msa0558280:CDS 30.0%
GAGATCAATTTCTGCTATGA+TGG - chr4_1:56907342-56907361 None:intergenic 35.0%
! GGAACATAAAATCTAGGATG+TGG - chr4_1:56907444-56907463 None:intergenic 35.0%
! TTGGGTATTTTCTATCCCTT+GGG - chr4_1:56907594-56907613 None:intergenic 35.0%
! TTTGGGTATTTTCTATCCCT+TGG - chr4_1:56907595-56907614 None:intergenic 35.0%
AGGGATAGAAAATACCCAAA+TGG + chr4_1:56907595-56907614 Msa0558280:CDS 35.0%
TGTGCATATACATACCCTTA+GGG - chr4_1:56907890-56907909 None:intergenic 35.0%
!!! CTCTCTGTTCCTTTTTTGAA+TGG + chr4_1:56907986-56908005 Msa0558280:intron 35.0%
CCCAACACATTTAATTACAC+TGG - chr4_1:56908119-56908138 None:intergenic 35.0%
GCTTCTTGAAGATGAATGTT+TGG - chr4_1:56908376-56908395 None:intergenic 35.0%
! TCTTCAAGAAGCACAAGTTA+TGG + chr4_1:56908384-56908403 Msa0558280:CDS 35.0%
GGAATCTTAGCAAATGATCA+CGG + chr4_1:56908435-56908454 Msa0558280:CDS 35.0%
AATGATCACGGAATGCAAAA+TGG + chr4_1:56908447-56908466 Msa0558280:CDS 35.0%
CATTTAGTGCACGTTTCATA+GGG - chr4_1:56908521-56908540 None:intergenic 35.0%
!!! TCACAGTTTTGGAATGAAAC+AGG + chr4_1:56908546-56908565 Msa0558280:CDS 35.0%
!!! CACAGTTTTGGAATGAAACA+GGG + chr4_1:56908547-56908566 Msa0558280:CDS 35.0%
TAGAATAAGTAGCAATGCTG+AGG + chr4_1:56908620-56908639 Msa0558280:CDS 35.0%
TGATGAAAAGTTGTGTTTGG+TGG - chr4_1:56908681-56908700 None:intergenic 35.0%
AATTCAATTCTTGGGTCTGT+TGG + chr4_1:56908702-56908721 Msa0558280:CDS 35.0%
TTCAACTTCCGGACATAAAT+TGG + chr4_1:56908748-56908767 Msa0558280:CDS 35.0%
GAGATCAATTTCTGCTATGA+TGG - chr4_1:56907342-56907361 None:intergenic 35.0%
! GGAACATAAAATCTAGGATG+TGG - chr4_1:56907444-56907463 None:intergenic 35.0%
! TTGGGTATTTTCTATCCCTT+GGG - chr4_1:56907594-56907613 None:intergenic 35.0%
! TTTGGGTATTTTCTATCCCT+TGG - chr4_1:56907595-56907614 None:intergenic 35.0%
AGGGATAGAAAATACCCAAA+TGG + chr4_1:56907595-56907614 Msa0558280:CDS 35.0%
TGTGCATATACATACCCTTA+GGG - chr4_1:56907890-56907909 None:intergenic 35.0%
!!! CTCTCTGTTCCTTTTTTGAA+TGG + chr4_1:56907986-56908005 Msa0558280:intron 35.0%
CCCAACACATTTAATTACAC+TGG - chr4_1:56908119-56908138 None:intergenic 35.0%
GCTTCTTGAAGATGAATGTT+TGG - chr4_1:56908376-56908395 None:intergenic 35.0%
! TCTTCAAGAAGCACAAGTTA+TGG + chr4_1:56908384-56908403 Msa0558280:CDS 35.0%
GGAATCTTAGCAAATGATCA+CGG + chr4_1:56908435-56908454 Msa0558280:CDS 35.0%
AATGATCACGGAATGCAAAA+TGG + chr4_1:56908447-56908466 Msa0558280:CDS 35.0%
CATTTAGTGCACGTTTCATA+GGG - chr4_1:56908521-56908540 None:intergenic 35.0%
!!! TCACAGTTTTGGAATGAAAC+AGG + chr4_1:56908546-56908565 Msa0558280:CDS 35.0%
!!! CACAGTTTTGGAATGAAACA+GGG + chr4_1:56908547-56908566 Msa0558280:CDS 35.0%
TAGAATAAGTAGCAATGCTG+AGG + chr4_1:56908620-56908639 Msa0558280:CDS 35.0%
TGATGAAAAGTTGTGTTTGG+TGG - chr4_1:56908681-56908700 None:intergenic 35.0%
AATTCAATTCTTGGGTCTGT+TGG + chr4_1:56908702-56908721 Msa0558280:CDS 35.0%
TTCAACTTCCGGACATAAAT+TGG + chr4_1:56908748-56908767 Msa0558280:CDS 35.0%
CAACGAGTTCTTCATCTGTT+GGG - chr4_1:56907274-56907293 None:intergenic 40.0%
ACAACGAGTTCTTCATCTGT+TGG - chr4_1:56907275-56907294 None:intergenic 40.0%
! CAGAAGCAGCTTTTCTTTTG+AGG - chr4_1:56907304-56907323 None:intergenic 40.0%
ATTTCTGCTATGATGGCTAC+TGG - chr4_1:56907335-56907354 None:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG + chr4_1:56907357-56907376 Msa0558280:CDS 40.0%
TCTCTACAAATTCGACCCAT+GGG + chr4_1:56907358-56907377 Msa0558280:CDS 40.0%
AGGATGTGGGTTTGAGTAAA+TGG - chr4_1:56907430-56907449 None:intergenic 40.0%
GAAAATACCCAAATGGAGCA+AGG + chr4_1:56907602-56907621 Msa0558280:CDS 40.0%
TATTAGGCCTTGCTCCATTT+GGG - chr4_1:56907612-56907631 None:intergenic 40.0%
AAATGGAGCAAGGCCTAATA+GGG + chr4_1:56907612-56907631 Msa0558280:CDS 40.0%
TCTGATGGGAATCAGAAAGT+TGG + chr4_1:56907688-56907707 Msa0558280:CDS 40.0%
TTGTTTGGAGGATGATCAGA+AGG - chr4_1:56907853-56907872 None:intergenic 40.0%
GTGTGCATATACATACCCTT+AGG - chr4_1:56907891-56907910 None:intergenic 40.0%
ATGAAACACGGATACAGACA+CGG + chr4_1:56908051-56908070 Msa0558280:intron 40.0%
!!! TGGTTTTGGAGCTTGATGAT+TGG + chr4_1:56908250-56908269 Msa0558280:intron 40.0%
!!! GGTTTTGGAGCTTGATGATT+GGG + chr4_1:56908251-56908270 Msa0558280:intron 40.0%
TGGTTGTGACACAAACTCAA+AGG + chr4_1:56908467-56908486 Msa0558280:CDS 40.0%
GGTTGTGACACAAACTCAAA+GGG + chr4_1:56908468-56908487 Msa0558280:CDS 40.0%
GCATTTAGTGCACGTTTCAT+AGG - chr4_1:56908522-56908541 None:intergenic 40.0%
GGTCATCTTCTTCAAGCAAA+CGG + chr4_1:56908577-56908596 Msa0558280:CDS 40.0%
TCTTCAAGCAAACGGTTTCA+TGG + chr4_1:56908585-56908604 Msa0558280:CDS 40.0%
GAGGCAACAATTTCAACTTC+CGG + chr4_1:56908737-56908756 Msa0558280:CDS 40.0%
CAACGAGTTCTTCATCTGTT+GGG - chr4_1:56907274-56907293 None:intergenic 40.0%
ACAACGAGTTCTTCATCTGT+TGG - chr4_1:56907275-56907294 None:intergenic 40.0%
! CAGAAGCAGCTTTTCTTTTG+AGG - chr4_1:56907304-56907323 None:intergenic 40.0%
ATTTCTGCTATGATGGCTAC+TGG - chr4_1:56907335-56907354 None:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG + chr4_1:56907357-56907376 Msa0558280:CDS 40.0%
TCTCTACAAATTCGACCCAT+GGG + chr4_1:56907358-56907377 Msa0558280:CDS 40.0%
AGGATGTGGGTTTGAGTAAA+TGG - chr4_1:56907430-56907449 None:intergenic 40.0%
GAAAATACCCAAATGGAGCA+AGG + chr4_1:56907602-56907621 Msa0558280:CDS 40.0%
TATTAGGCCTTGCTCCATTT+GGG - chr4_1:56907612-56907631 None:intergenic 40.0%
AAATGGAGCAAGGCCTAATA+GGG + chr4_1:56907612-56907631 Msa0558280:CDS 40.0%
TCTGATGGGAATCAGAAAGT+TGG + chr4_1:56907688-56907707 Msa0558280:CDS 40.0%
TTGTTTGGAGGATGATCAGA+AGG - chr4_1:56907853-56907872 None:intergenic 40.0%
GTGTGCATATACATACCCTT+AGG - chr4_1:56907891-56907910 None:intergenic 40.0%
ATGAAACACGGATACAGACA+CGG + chr4_1:56908051-56908070 Msa0558280:intron 40.0%
!!! TGGTTTTGGAGCTTGATGAT+TGG + chr4_1:56908250-56908269 Msa0558280:intron 40.0%
!!! GGTTTTGGAGCTTGATGATT+GGG + chr4_1:56908251-56908270 Msa0558280:intron 40.0%
TGGTTGTGACACAAACTCAA+AGG + chr4_1:56908467-56908486 Msa0558280:CDS 40.0%
GGTTGTGACACAAACTCAAA+GGG + chr4_1:56908468-56908487 Msa0558280:CDS 40.0%
GCATTTAGTGCACGTTTCAT+AGG - chr4_1:56908522-56908541 None:intergenic 40.0%
GGTCATCTTCTTCAAGCAAA+CGG + chr4_1:56908577-56908596 Msa0558280:CDS 40.0%
TCTTCAAGCAAACGGTTTCA+TGG + chr4_1:56908585-56908604 Msa0558280:CDS 40.0%
GAGGCAACAATTTCAACTTC+CGG + chr4_1:56908737-56908756 Msa0558280:CDS 40.0%
CTTCATCTGTTGGGTGGAAT+CGG - chr4_1:56907265-56907284 None:intergenic 45.0%
TCATACTTGGGAGTTCCCAT+GGG - chr4_1:56907376-56907395 None:intergenic 45.0%
TTCATACTTGGGAGTTCCCA+TGG - chr4_1:56907377-56907396 None:intergenic 45.0%
!!! CAAGTTTTGGGGAACAAGAG+TGG + chr4_1:56907557-56907576 Msa0558280:CDS 45.0%
!!! AGTGGTACTTTTTCAGCCCA+AGG + chr4_1:56907575-56907594 Msa0558280:CDS 45.0%
!!! GTGGTACTTTTTCAGCCCAA+GGG + chr4_1:56907576-56907595 Msa0558280:CDS 45.0%
CTATTAGGCCTTGCTCCATT+TGG - chr4_1:56907613-56907632 None:intergenic 45.0%
CAAATGGAGCAAGGCCTAAT+AGG + chr4_1:56907611-56907630 Msa0558280:CDS 45.0%
! CTAATAGGGCTGCTACTTCT+GGG + chr4_1:56907626-56907645 Msa0558280:CDS 45.0%
!! TCTGGGTATTGGAAAGCTAC+TGG + chr4_1:56907643-56907662 Msa0558280:CDS 45.0%
TAAATGTGTTGGGGTCGTGT+CGG + chr4_1:56908126-56908145 Msa0558280:intron 45.0%
GGACACCTCTAATATGAGGA+GGG + chr4_1:56908156-56908175 Msa0558280:intron 45.0%
TGATCCATTAAGAGTGGCCT+TGG - chr4_1:56908318-56908337 None:intergenic 45.0%
TGTGACACAAACTCAAAGGG+TGG + chr4_1:56908471-56908490 Msa0558280:CDS 45.0%
TTGCTTGAAGAAGATGACCC+TGG - chr4_1:56908576-56908595 None:intergenic 45.0%
! AAGTTGTGTTTGGTGGAAGC+TGG - chr4_1:56908674-56908693 None:intergenic 45.0%
ATTCTTGGGTCTGTTGGAGA+TGG + chr4_1:56908708-56908727 Msa0558280:CDS 45.0%
CTGTTGGAGATGGTGTAATG+AGG + chr4_1:56908718-56908737 Msa0558280:CDS 45.0%
CTTCATCTGTTGGGTGGAAT+CGG - chr4_1:56907265-56907284 None:intergenic 45.0%
TCATACTTGGGAGTTCCCAT+GGG - chr4_1:56907376-56907395 None:intergenic 45.0%
TTCATACTTGGGAGTTCCCA+TGG - chr4_1:56907377-56907396 None:intergenic 45.0%
!!! CAAGTTTTGGGGAACAAGAG+TGG + chr4_1:56907557-56907576 Msa0558280:CDS 45.0%
!!! AGTGGTACTTTTTCAGCCCA+AGG + chr4_1:56907575-56907594 Msa0558280:CDS 45.0%
!!! GTGGTACTTTTTCAGCCCAA+GGG + chr4_1:56907576-56907595 Msa0558280:CDS 45.0%
CTATTAGGCCTTGCTCCATT+TGG - chr4_1:56907613-56907632 None:intergenic 45.0%
CAAATGGAGCAAGGCCTAAT+AGG + chr4_1:56907611-56907630 Msa0558280:CDS 45.0%
! CTAATAGGGCTGCTACTTCT+GGG + chr4_1:56907626-56907645 Msa0558280:CDS 45.0%
!! TCTGGGTATTGGAAAGCTAC+TGG + chr4_1:56907643-56907662 Msa0558280:CDS 45.0%
TAAATGTGTTGGGGTCGTGT+CGG + chr4_1:56908126-56908145 Msa0558280:intron 45.0%
GGACACCTCTAATATGAGGA+GGG + chr4_1:56908156-56908175 Msa0558280:intron 45.0%
TGATCCATTAAGAGTGGCCT+TGG - chr4_1:56908318-56908337 None:intergenic 45.0%
TGTGACACAAACTCAAAGGG+TGG + chr4_1:56908471-56908490 Msa0558280:CDS 45.0%
TTGCTTGAAGAAGATGACCC+TGG - chr4_1:56908576-56908595 None:intergenic 45.0%
! AAGTTGTGTTTGGTGGAAGC+TGG - chr4_1:56908674-56908693 None:intergenic 45.0%
ATTCTTGGGTCTGTTGGAGA+TGG + chr4_1:56908708-56908727 Msa0558280:CDS 45.0%
CTGTTGGAGATGGTGTAATG+AGG + chr4_1:56908718-56908737 Msa0558280:CDS 45.0%
!!! TTTTTTTTTTTTTTTGTTAT+AGG + chr4_1:56907529-56907548 Msa0558280:intron 5.0%
!!! TTTTTTTTTTTTTTTGTTAT+AGG + chr4_1:56907529-56907548 Msa0558280:intron 5.0%
CGAGTTCTTCATCTGTTGGG+TGG - chr4_1:56907271-56907290 None:intergenic 50.0%
GCTATGATGGCTACTGGAAG+AGG - chr4_1:56907329-56907348 None:intergenic 50.0%
CCAGAAGTAGCAGCCCTATT+AGG - chr4_1:56907628-56907647 None:intergenic 50.0%
! CCTAATAGGGCTGCTACTTC+TGG + chr4_1:56907625-56907644 Msa0558280:CDS 50.0%
TATGGAGGGAAGCCACCAAA+AGG + chr4_1:56907733-56907752 Msa0558280:CDS 50.0%
CACGGGACACCTCTAATATG+AGG + chr4_1:56908152-56908171 Msa0558280:intron 50.0%
GGGACACCTCTAATATGAGG+AGG + chr4_1:56908155-56908174 Msa0558280:intron 50.0%
ACGGACCCTCCTCATATTAG+AGG - chr4_1:56908164-56908183 None:intergenic 50.0%
! CATTAAGAGTGGCCTTGGCA+TGG - chr4_1:56908313-56908332 None:intergenic 50.0%
CATGCCAAGGCCACTCTTAA+TGG + chr4_1:56908311-56908330 Msa0558280:CDS 50.0%
TGGAATGAAACAGGGTCACC+AGG + chr4_1:56908555-56908574 Msa0558280:CDS 50.0%
GGAATGAAACAGGGTCACCA+GGG + chr4_1:56908556-56908575 Msa0558280:CDS 50.0%
CGAGTTCTTCATCTGTTGGG+TGG - chr4_1:56907271-56907290 None:intergenic 50.0%
GCTATGATGGCTACTGGAAG+AGG - chr4_1:56907329-56907348 None:intergenic 50.0%
CCAGAAGTAGCAGCCCTATT+AGG - chr4_1:56907628-56907647 None:intergenic 50.0%
! CCTAATAGGGCTGCTACTTC+TGG + chr4_1:56907625-56907644 Msa0558280:CDS 50.0%
TATGGAGGGAAGCCACCAAA+AGG + chr4_1:56907733-56907752 Msa0558280:CDS 50.0%
CACGGGACACCTCTAATATG+AGG + chr4_1:56908152-56908171 Msa0558280:intron 50.0%
GGGACACCTCTAATATGAGG+AGG + chr4_1:56908155-56908174 Msa0558280:intron 50.0%
ACGGACCCTCCTCATATTAG+AGG - chr4_1:56908164-56908183 None:intergenic 50.0%
! CATTAAGAGTGGCCTTGGCA+TGG - chr4_1:56908313-56908332 None:intergenic 50.0%
CATGCCAAGGCCACTCTTAA+TGG + chr4_1:56908311-56908330 Msa0558280:CDS 50.0%
TGGAATGAAACAGGGTCACC+AGG + chr4_1:56908555-56908574 Msa0558280:CDS 50.0%
GGAATGAAACAGGGTCACCA+GGG + chr4_1:56908556-56908575 Msa0558280:CDS 50.0%
! GGGCTGCTACTTCTGGGTAT+TGG + chr4_1:56907632-56907651 Msa0558280:CDS 55.0%
GGATGATCAGAAGGCAGAGG+AGG - chr4_1:56907844-56907863 None:intergenic 55.0%
GGAGGATGATCAGAAGGCAG+AGG - chr4_1:56907847-56907866 None:intergenic 55.0%
GCAACAGTAGCACCATGCCA+AGG + chr4_1:56908298-56908317 Msa0558280:CDS 55.0%
! GGGCTGCTACTTCTGGGTAT+TGG + chr4_1:56907632-56907651 Msa0558280:CDS 55.0%
GGATGATCAGAAGGCAGAGG+AGG - chr4_1:56907844-56907863 None:intergenic 55.0%
GGAGGATGATCAGAAGGCAG+AGG - chr4_1:56907847-56907866 None:intergenic 55.0%
GCAACAGTAGCACCATGCCA+AGG + chr4_1:56908298-56908317 Msa0558280:CDS 55.0%
TCGGAACCCTGGTGGTAGGT+GGG - chr4_1:56907246-56907265 None:intergenic 60.0%
ATCGGAACCCTGGTGGTAGG+TGG - chr4_1:56907247-56907266 None:intergenic 60.0%
GGAATCGGAACCCTGGTGGT+AGG - chr4_1:56907250-56907269 None:intergenic 60.0%
GTTGGGTGGAATCGGAACCC+TGG - chr4_1:56907257-56907276 None:intergenic 60.0%
TCGGAACCCTGGTGGTAGGT+GGG - chr4_1:56907246-56907265 None:intergenic 60.0%
ATCGGAACCCTGGTGGTAGG+TGG - chr4_1:56907247-56907266 None:intergenic 60.0%
GGAATCGGAACCCTGGTGGT+AGG - chr4_1:56907250-56907269 None:intergenic 60.0%
GTTGGGTGGAATCGGAACCC+TGG - chr4_1:56907257-56907276 None:intergenic 60.0%
CACACCCCCACCTACCACCA+GGG + chr4_1:56907237-56907256 Msa0558280:CDS 65.0%
GGAACCCTGGTGGTAGGTGG+GGG - chr4_1:56907244-56907263 None:intergenic 65.0%
CGGAACCCTGGTGGTAGGTG+GGG - chr4_1:56907245-56907264 None:intergenic 65.0%
GGGTGGAATCGGAACCCTGG+TGG - chr4_1:56907254-56907273 None:intergenic 65.0%
! TTGGGGTCGTGTCGGCGACA+CGG + chr4_1:56908134-56908153 Msa0558280:intron 65.0%
CACACCCCCACCTACCACCA+GGG + chr4_1:56907237-56907256 Msa0558280:CDS 65.0%
GGAACCCTGGTGGTAGGTGG+GGG - chr4_1:56907244-56907263 None:intergenic 65.0%
CGGAACCCTGGTGGTAGGTG+GGG - chr4_1:56907245-56907264 None:intergenic 65.0%
GGGTGGAATCGGAACCCTGG+TGG - chr4_1:56907254-56907273 None:intergenic 65.0%
! TTGGGGTCGTGTCGGCGACA+CGG + chr4_1:56908134-56908153 Msa0558280:intron 65.0%
CCTGGTGGTAGGTGGGGGTG+TGG - chr4_1:56907239-56907258 None:intergenic 70.0%
CCACACCCCCACCTACCACC+AGG + chr4_1:56907236-56907255 Msa0558280:CDS 70.0%
! TGGGGTCGTGTCGGCGACAC+GGG + chr4_1:56908135-56908154 Msa0558280:intron 70.0%
CCTGGTGGTAGGTGGGGGTG+TGG - chr4_1:56907239-56907258 None:intergenic 70.0%
CCACACCCCCACCTACCACC+AGG + chr4_1:56907236-56907255 Msa0558280:CDS 70.0%
! TGGGGTCGTGTCGGCGACAC+GGG + chr4_1:56908135-56908154 Msa0558280:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 56907206 56908776 56907206 ID=Msa0558280;Name=Msa0558280
chr4_1 mRNA 56907206 56908776 56907206 ID=Msa0558280-mRNA-1;Parent=Msa0558280;Name=Msa0558280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0|1|1|1|3|0|347
chr4_1 exon 56907206 56907389 56907206 ID=Msa0558280-mRNA-1:exon:17209;Parent=Msa0558280-mRNA-1
chr4_1 exon 56907551 56907894 56907551 ID=Msa0558280-mRNA-1:exon:17210;Parent=Msa0558280-mRNA-1
chr4_1 exon 56908261 56908776 56908261 ID=Msa0558280-mRNA-1:exon:17211;Parent=Msa0558280-mRNA-1
chr4_1 CDS 56907206 56907389 56907206 ID=Msa0558280-mRNA-1:cds;Parent=Msa0558280-mRNA-1
chr4_1 CDS 56907551 56907894 56907551 ID=Msa0558280-mRNA-1:cds;Parent=Msa0558280-mRNA-1
chr4_1 CDS 56908261 56908776 56908261 ID=Msa0558280-mRNA-1:cds;Parent=Msa0558280-mRNA-1
Gene Sequence

>Msa0558280

ATGGACAGCACAGATTCATCATCTTGCTCTCCACACCCCCACCTACCACCAGGGTTCCGATTCCACCCAACAGATGAAGAACTCGTTGTTCACTACCTCAAAAGAAAAGCTGCTTCTGCACCTCTTCCAGTAGCCATCATAGCAGAAATTGATCTCTACAAATTCGACCCATGGGAACTCCCAAGTAAAGCAAGTTTTGGGGAACAAGAGTGGTACTTTTTCAGCCCAAGGGATAGAAAATACCCAAATGGAGCAAGGCCTAATAGGGCTGCTACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGAATCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGAGTTAAAACTAATTGGATTATGCATGAGTATAGGCTCATCACTGATCATAATAATCATAATTCTTATAATGCAACTTCAAAAACTCCTCCTCTGCCTTCTGATCATCCTCCAAACAATAACAAGAAGAATTCCCTAAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTAGCACCATGCCAAGGCCACTCTTAATGGATCAATATGATGATCAAACCTATAATATGCAACAAAACTCCAAACATTCATCTTCAAGAAGCACAAGTTATGGACTTGAAAATGATGACAATTTCTTCGATGGAATCTTAGCAAATGATCACGGAATGCAAAATGGTTGTGACACAAACTCAAAGGGTGGTAACAATAATAATGAATCATTATTCCCTATGAAACGTGCACTAAATGCATCATCACAGTTTTGGAATGAAACAGGGTCACCAGGGTCATCTTCTTCAAGCAAACGGTTTCATGGAGATCTTAATAGTAGAATAAGTAGCAATGCTGAGGAAAATAATTCATTTGTTTCACTGCTTAGCCAGCTTCCACCAAACACAACTTTTCATCAAAATTCAATTCTTGGGTCTGTTGGAGATGGTGTAATGAGGCAACAATTTCAACTTCCGGACATAAATTGGAACTAG
Protein sequence

>Msa0558280

MDSTDSSSCSPHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNHNSYNATSKTPPLPSDHPPNNNKKNSLRLDDWVLCRIYKKSNSSTMPRPLLMDQYDDQTYNMQQNSKHSSSRSTSYGLENDDNFFDGILANDHGMQNGCDTNSKGGNNNNESLFPMKRALNASSQFWNETGSPGSSSSSKRFHGDLNSRISSNAEENNSFVSLLSQLPPNTTFHQNSILGSVGDGVMRQQFQLPDINWN*