AlfalfaGEDB | Msa0558280

M. sativa cultivar zhongmu-4 / Msa0558280

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558280	XP_013457094.1	97.118	347	7	1	1	347	1	344	0.0	694

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558280	sp\|Q8GY42\|NAC25_ARATH	54.420	362	110	13	1	347	1	322	4.96e-111	329

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558280	A0A072UZ30	97.118	347	7	1	1	347	1	344	0.0	694

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TFs/TRs:

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Gene ID	Type	Classification
Msa0558280	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558280	MtrunA17_Chr4g0047841	97.118	347	7	1	1	347	1	344	0.0	694
Msa0558280	MtrunA17_Chr2g0318101	53.368	386	106	14	1	346	1	352	3.73e-119	348
Msa0558280	MtrunA17_Chr7g0252971	64.211	190	42	3	10	192	3	173	1.17e-84	259
Msa0558280	MtrunA17_Chr7g0263931	52.245	245	92	4	14	255	10	232	7.15e-80	247
Msa0558280	MtrunA17_Chr2g0326361	63.842	177	45	2	15	191	14	171	1.66e-78	243
Msa0558280	MtrunA17_Chr5g0417791	62.147	177	46	2	14	190	2	157	6.71e-78	239
Msa0558280	MtrunA17_Chr3g0124761	65.922	179	36	3	14	191	6	160	8.37e-77	238
Msa0558280	MtrunA17_Chr4g0042561	64.943	174	40	3	15	188	9	161	9.69e-77	237
Msa0558280	MtrunA17_Chr2g0318081	63.388	183	42	3	15	197	16	173	4.91e-75	235
Msa0558280	MtrunA17_Chr8g0359921	63.934	183	43	3	15	197	14	173	1.99e-74	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0558280	AT1G61110.1	54.420	362	110	13	1	347	1	322	5.04e-112	329
Msa0558280	AT3G15510.1	50.386	389	122	14	1	346	1	361	1.35e-102	306
Msa0558280	AT3G04070.1	63.298	188	66	1	8	192	3	190	1.36e-83	258
Msa0558280	AT3G04070.2	62.766	188	51	3	8	192	3	174	4.16e-80	248
Msa0558280	AT1G69490.1	62.778	180	46	3	15	194	9	167	5.81e-79	243
Msa0558280	AT1G52880.1	51.546	291	101	7	19	292	21	288	1.03e-77	241
Msa0558280	AT4G27410.2	63.483	178	40	3	15	192	14	166	3.80e-75	234
Msa0558280	AT1G01720.1	64.246	179	42	2	14	192	6	162	9.97e-75	233
Msa0558280	AT1G52890.1	64.607	178	38	4	15	192	14	166	3.08e-74	232
Msa0558280	AT1G77450.1	64.205	176	38	3	14	188	9	160	5.08e-74	229

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Find 77 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGAGCAAGGCCTAATA+GGG	0.447510	4_1:+56907612	Msa0558280:CDS
AACTAGTTCCAATTTATGTC+CGG	0.458531	4_1:-56908756	None:intergenic
AAGCCTATATTAACATCTGA+TGG	0.457224	4_1:+56907673	Msa0558280:CDS
AAGTTGTGTTTGGTGGAAGC+TGG	0.544443	4_1:-56908671	None:intergenic
AATGATCACGGAATGCAAAA+TGG	0.381179	4_1:+56908447	Msa0558280:CDS
AATGATGACAATTTCTTCGA+TGG	0.445563	4_1:+56908414	Msa0558280:CDS
AATTCAATTCTTGGGTCTGT+TGG	0.387343	4_1:+56908702	Msa0558280:CDS
ACAACGAGTTCTTCATCTGT+TGG	0.524281	4_1:-56907272	None:intergenic
AGCCTATATTAACATCTGAT+GGG	0.592875	4_1:+56907674	Msa0558280:CDS
AGGGATAGAAAATACCCAAA+TGG	0.534980	4_1:+56907595	Msa0558280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTGAAAAAGTTTCATACT+TGG	-	chr4_1:56907389-56907408	None:intergenic	30.0%
ATGGATGAAAAGATGAAATG+GGG	-	chr4_1:56907411-56907430	None:intergenic	30.0%
AAGCCTATATTAACATCTGA+TGG	+	chr4_1:56907673-56907692	Msa0558280:CDS	30.0%
AGCCTATATTAACATCTGAT+GGG	+	chr4_1:56907674-56907693	Msa0558280:CDS	30.0%
TTCCCATCAGATGTTAATAT+AGG	-	chr4_1:56907679-56907698	None:intergenic	30.0%
ATTGGATTATGCATGAGTAT+AGG	+	chr4_1:56907767-56907786	Msa0558280:CDS	30.0%
ATAACAAGAAGAATTCCCTA+AGG	+	chr4_1:56907872-56907891	Msa0558280:CDS	30.0%
TAACAAGAAGAATTCCCTAA+GGG	+	chr4_1:56907873-56907892	Msa0558280:CDS	30.0%
ATTCATGAAACAAATGCACA+TGG	-	chr4_1:56907927-56907946	None:intergenic	30.0%
AAGATCAGACCATTCAAAAA+AGG	-	chr4_1:56907998-56908017	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	56907206	56908776	56907206	ID=Msa0558280;Name=Msa0558280
chr4_1	mRNA	56907206	56908776	56907206	ID=Msa0558280-mRNA-1;Parent=Msa0558280;Name=Msa0558280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|347
chr4_1	exon	56907206	56907389	56907206	ID=Msa0558280-mRNA-1:exon:17209;Parent=Msa0558280-mRNA-1
chr4_1	exon	56907551	56907894	56907551	ID=Msa0558280-mRNA-1:exon:17210;Parent=Msa0558280-mRNA-1
chr4_1	exon	56908261	56908776	56908261	ID=Msa0558280-mRNA-1:exon:17211;Parent=Msa0558280-mRNA-1
chr4_1	CDS	56907206	56907389	56907206	ID=Msa0558280-mRNA-1:cds;Parent=Msa0558280-mRNA-1
chr4_1	CDS	56907551	56907894	56907551	ID=Msa0558280-mRNA-1:cds;Parent=Msa0558280-mRNA-1
chr4_1	CDS	56908261	56908776	56908261	ID=Msa0558280-mRNA-1:cds;Parent=Msa0558280-mRNA-1

Gene Sequence

>Msa0558280

ATGGACAGCACAGATTCATCATCTTGCTCTCCACACCCCCACCTACCACCAGGGTTCCGATTCCACCCAACAGATGAAGAACTCGTTGTTCACTACCTCAAAAGAAAAGCTGCTTCTGCACCTCTTCCAGTAGCCATCATAGCAGAAATTGATCTCTACAAATTCGACCCATGGGAACTCCCAAGTAAAGCAAGTTTTGGGGAACAAGAGTGGTACTTTTTCAGCCCAAGGGATAGAAAATACCCAAATGGAGCAAGGCCTAATAGGGCTGCTACTTCTGGGTATTGGAAAGCTACTGGAACTGATAAGCCTATATTAACATCTGATGGGAATCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGAGGGAAGCCACCAAAAGGAGTTAAAACTAATTGGATTATGCATGAGTATAGGCTCATCACTGATCATAATAATCATAATTCTTATAATGCAACTTCAAAAACTCCTCCTCTGCCTTCTGATCATCCTCCAAACAATAACAAGAAGAATTCCCTAAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTAGCACCATGCCAAGGCCACTCTTAATGGATCAATATGATGATCAAACCTATAATATGCAACAAAACTCCAAACATTCATCTTCAAGAAGCACAAGTTATGGACTTGAAAATGATGACAATTTCTTCGATGGAATCTTAGCAAATGATCACGGAATGCAAAATGGTTGTGACACAAACTCAAAGGGTGGTAACAATAATAATGAATCATTATTCCCTATGAAACGTGCACTAAATGCATCATCACAGTTTTGGAATGAAACAGGGTCACCAGGGTCATCTTCTTCAAGCAAACGGTTTCATGGAGATCTTAATAGTAGAATAAGTAGCAATGCTGAGGAAAATAATTCATTTGTTTCACTGCTTAGCCAGCTTCCACCAAACACAACTTTTCATCAAAATTCAATTCTTGGGTCTGTTGGAGATGGTGTAATGAGGCAACAATTTCAACTTCCGGACATAAATTGGAACTAG

Protein sequence

>Msa0558280

MDSTDSSSCSPHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNHNSYNATSKTPPLPSDHPPNNNKKNSLRLDDWVLCRIYKKSNSSTMPRPLLMDQYDDQTYNMQQNSKHSSSRSTSYGLENDDNFFDGILANDHGMQNGCDTNSKGGNNNNESLFPMKRALNASSQFWNETGSPGSSSSSKRFHGDLNSRISSNAEENNSFVSLLSQLPPNTTFHQNSILGSVGDGVMRQQFQLPDINWN*