Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558930 | XP_013457137.1 | 97.143 | 210 | 6 | 0 | 1 | 210 | 1 | 210 | 3.45e-147 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558930 | sp|O81900|DYT1_ARATH | 45.283 | 159 | 75 | 2 | 44 | 192 | 29 | 185 | 6.49e-38 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558930 | A0A072UQ23 | 97.143 | 210 | 6 | 0 | 1 | 210 | 1 | 210 | 1.65e-147 | 418 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0558930 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558930 | MtrunA17_Chr4g0048851 | 97.143 | 210 | 6 | 0 | 1 | 210 | 1 | 210 | 3.17e-151 | 418 |
| Msa0558930 | MtrunA17_Chr4g0048891 | 51.111 | 135 | 62 | 3 | 1 | 133 | 1 | 133 | 3.91e-36 | 124 |
| Msa0558930 | MtrunA17_Chr8g0365711 | 32.000 | 175 | 105 | 3 | 42 | 202 | 239 | 413 | 4.49e-20 | 87.4 |
| Msa0558930 | MtrunA17_Chr1g0211081 | 30.526 | 190 | 92 | 4 | 27 | 183 | 304 | 486 | 6.18e-18 | 81.6 |
| Msa0558930 | MtrunA17_Chr2g0320291 | 31.737 | 167 | 109 | 3 | 37 | 198 | 121 | 287 | 8.17e-16 | 74.3 |
| Msa0558930 | MtrunA17_Chr4g0028071 | 29.940 | 167 | 96 | 5 | 46 | 197 | 148 | 308 | 1.50e-15 | 73.9 |
| Msa0558930 | MtrunA17_Chr2g0298751 | 27.711 | 166 | 102 | 2 | 45 | 192 | 50 | 215 | 5.38e-12 | 63.2 |
| Msa0558930 | MtrunA17_Chr3g0131691 | 45.055 | 91 | 46 | 2 | 14 | 104 | 269 | 355 | 8.73e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558930 | AT4G21330.1 | 45.283 | 159 | 75 | 2 | 44 | 192 | 29 | 185 | 6.59e-39 | 133 |
| Msa0558930 | AT2G16910.1 | 32.298 | 161 | 82 | 3 | 46 | 179 | 313 | 473 | 1.05e-17 | 81.3 |
| Msa0558930 | AT5G57150.3 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 1.60e-14 | 70.1 |
| Msa0558930 | AT5G57150.5 | 30.769 | 169 | 103 | 3 | 38 | 192 | 45 | 213 | 1.65e-14 | 70.1 |
| Msa0558930 | AT5G57150.2 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 2.00e-14 | 69.7 |
| Msa0558930 | AT5G57150.1 | 30.769 | 169 | 103 | 3 | 38 | 192 | 45 | 213 | 3.16e-14 | 69.7 |
| Msa0558930 | AT5G57150.4 | 30.769 | 169 | 103 | 3 | 38 | 192 | 46 | 214 | 4.00e-14 | 69.7 |
| Msa0558930 | AT2G28160.1 | 28.415 | 183 | 118 | 5 | 21 | 191 | 103 | 284 | 4.08e-13 | 67.4 |
| Msa0558930 | AT2G28160.2 | 28.415 | 183 | 118 | 5 | 21 | 191 | 103 | 284 | 4.15e-13 | 67.4 |
| Msa0558930 | AT1G10610.2 | 28.571 | 147 | 96 | 1 | 44 | 181 | 231 | 377 | 7.94e-13 | 67.0 |
| Msa0558930 | AT1G10610.1 | 28.571 | 147 | 96 | 1 | 44 | 181 | 261 | 407 | 9.85e-13 | 66.6 |
| Msa0558930 | AT1G10610.3 | 28.571 | 147 | 96 | 1 | 44 | 181 | 164 | 310 | 1.41e-12 | 65.9 |
| Msa0558930 | AT1G12860.1 | 29.221 | 154 | 94 | 2 | 46 | 186 | 266 | 417 | 9.40e-12 | 63.9 |
| Msa0558930 | AT1G12860.2 | 29.221 | 154 | 94 | 2 | 46 | 186 | 266 | 417 | 1.01e-11 | 63.5 |
| Msa0558930 | AT4G37850.2 | 31.818 | 154 | 80 | 4 | 51 | 188 | 156 | 300 | 2.66e-11 | 62.0 |
| Msa0558930 | AT4G37850.1 | 31.818 | 154 | 80 | 4 | 51 | 188 | 156 | 300 | 2.66e-11 | 62.0 |
| Msa0558930 | AT3G26744.6 | 30.128 | 156 | 94 | 3 | 46 | 186 | 306 | 461 | 8.53e-11 | 60.8 |
| Msa0558930 | AT3G26744.1 | 30.128 | 156 | 94 | 3 | 46 | 186 | 306 | 461 | 8.90e-11 | 60.8 |
| Msa0558930 | AT3G26744.4 | 30.128 | 156 | 94 | 3 | 46 | 186 | 306 | 461 | 8.90e-11 | 60.8 |
| Msa0558930 | AT3G26744.2 | 30.128 | 156 | 94 | 3 | 46 | 186 | 306 | 461 | 8.90e-11 | 60.8 |
Find 44 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAACTATTATCAAGTATT+AGG | 0.172705 | 4_1:-57970284 | None:intergenic |
| TCTTTCTGTCTCAAGGTTCT+TGG | 0.203142 | 4_1:+57971423 | None:intergenic |
| TTCTTGGATGTGAACACTTT+TGG | 0.244554 | 4_1:+57971439 | None:intergenic |
| GATGAATAAAATGGGGTTAC+AGG | 0.250695 | 4_1:-57970793 | Msa0558930:intron |
| AACTTCATGTTGCAACTTCA+TGG | 0.287708 | 4_1:+57970905 | None:intergenic |
| TGTTGATGAGATGAATAAAA+TGG | 0.288149 | 4_1:-57970802 | Msa0558930:CDS |
| TTGGGTTTCAATGCTGAAAA+TGG | 0.303250 | 4_1:-57971514 | Msa0558930:CDS |
| GCAGAAGACTCTCTTTGTTT+TGG | 0.306313 | 4_1:+57970825 | None:intergenic |
| CCAACTATTATCAAGTATTA+GGG | 0.313449 | 4_1:-57970283 | None:intergenic |
| CCCTAATACTTGATAATAGT+TGG | 0.313701 | 4_1:+57970283 | None:intergenic |
| CAATAGACTATGTGTGTCTA+TGG | 0.334837 | 4_1:-57971542 | Msa0558930:CDS |
| TTCTCTTTCTTTCTGTCTCA+AGG | 0.354427 | 4_1:+57971416 | None:intergenic |
| ATGCTGAAAATGGTAGCAAT+AGG | 0.358285 | 4_1:-57971504 | Msa0558930:CDS |
| TCTCATTACAGCCTCCTTGC+AGG | 0.362149 | 4_1:-57970522 | Msa0558930:intron |
| ATGGTAGCAATAGGGGAAAC+TGG | 0.388089 | 4_1:-57971495 | Msa0558930:CDS |
| GAAACTCACTAGCAGACTTT+TGG | 0.388264 | 4_1:-57971389 | Msa0558930:CDS |
| GTGCTTACATTTGTGATGAT+TGG | 0.403897 | 4_1:+57971349 | None:intergenic |
| TGCTGAAAATGGTAGCAATA+GGG | 0.418097 | 4_1:-57971503 | Msa0558930:CDS |
| GTTGATGAGATGAATAAAAT+GGG | 0.433684 | 4_1:-57970801 | Msa0558930:CDS |
| AGACCTCAGTGTTACAACTA+TGG | 0.459768 | 4_1:-57970555 | Msa0558930:CDS |
| GTGCAGGTAGCAAAAGTTGA+TGG | 0.467212 | 4_1:-57970671 | Msa0558930:CDS |
| GAATGATTTGAACATTGAAA+TGG | 0.483853 | 4_1:-57970579 | Msa0558930:CDS |
| CACAATAGAGCTTGATGGAA+TGG | 0.493719 | 4_1:-57970874 | Msa0558930:CDS |
| AGTCTCACAATAGAGCTTGA+TGG | 0.495480 | 4_1:-57970879 | Msa0558930:CDS |
| TTGCTCATTGAGAAGAAAAG+AGG | 0.516161 | 4_1:-57970629 | Msa0558930:CDS |
| ATGTGTGTCTATGGAAGAGT+TGG | 0.537161 | 4_1:-57971533 | Msa0558930:CDS |
| CTCAGTGTTACAACTATGGC+AGG | 0.544737 | 4_1:-57970551 | Msa0558930:CDS |
| GAACAAAGCAAGCATTATTG+AGG | 0.548126 | 4_1:-57970943 | Msa0558930:CDS |
| CTTTCTATAGGAAGAGGTGC+AGG | 0.549579 | 4_1:-57970687 | Msa0558930:intron |
| GCTGAAAATGGTAGCAATAG+GGG | 0.556414 | 4_1:-57971502 | Msa0558930:CDS |
| AAGTTGATGGGAATAAGCTA+TGG | 0.561213 | 4_1:-57970658 | Msa0558930:CDS |
| GGAATTCGATAAAGTTCAAG+TGG | 0.574985 | 4_1:+57970304 | None:intergenic |
| AATTTATAGTGTCACCTGCA+AGG | 0.580808 | 4_1:+57970508 | None:intergenic |
| TTGAGACAGAAAGAAAGAGA+AGG | 0.583322 | 4_1:-57971414 | Msa0558930:CDS |
| AACAAGCACCGTGATAATGA+TGG | 0.583729 | 4_1:-57971466 | Msa0558930:CDS |
| TGCAGGTAGCAAAAGTTGAT+GGG | 0.584115 | 4_1:-57970670 | Msa0558930:CDS |
| TGTGTGTCTATGGAAGAGTT+GGG | 0.584878 | 4_1:-57971532 | Msa0558930:CDS |
| TTGGAACACCATCATTATCA+CGG | 0.592836 | 4_1:+57971458 | None:intergenic |
| TGAGACAGAAAGAAAGAGAA+GGG | 0.595420 | 4_1:-57971413 | Msa0558930:CDS |
| GCAATAGGGGAAACTGGAGA+AGG | 0.660867 | 4_1:-57971489 | Msa0558930:CDS |
| TCATTGAGAAGAAAAGAGGA+AGG | 0.667299 | 4_1:-57970625 | Msa0558930:CDS |
| TTGATGAGATGAATAAAATG+GGG | 0.713073 | 4_1:-57970800 | Msa0558930:CDS |
| CTGCCATAGTTGTAACACTG+AGG | 0.731214 | 4_1:+57970552 | None:intergenic |
| TTATAGTGTCACCTGCAAGG+AGG | 0.739971 | 4_1:+57970511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTATTATTAAGATGT+TGG | + | chr4_1:57970721-57970740 | None:intergenic | 10.0% |
| !! | AATAATTATTATTAAGATGT+TGG | + | chr4_1:57970721-57970740 | None:intergenic | 10.0% |
| !! | AGATAATGATATATAGTTTA+GGG | + | chr4_1:57970593-57970612 | None:intergenic | 15.0% |
| !! | TAATATCTTTATATAGTTCA+TGG | + | chr4_1:57970628-57970647 | None:intergenic | 15.0% |
| !! | AATAATAATTATTAACTCGA+CGG | - | chr4_1:57970728-57970747 | Msa0558930:intron | 15.0% |
| !!! | TAAATTGATAGTTTATTCAA+TGG | - | chr4_1:57970795-57970814 | Msa0558930:CDS | 15.0% |
| !!! | AGTTTTTAATTAGTACATTA+TGG | - | chr4_1:57970844-57970863 | Msa0558930:CDS | 15.0% |
| !!! | ATTCTATTTTTGTTATTTTC+AGG | - | chr4_1:57971503-57971522 | Msa0558930:CDS | 15.0% |
| !! | AGATAATGATATATAGTTTA+GGG | + | chr4_1:57970593-57970612 | None:intergenic | 15.0% |
| !! | TAATATCTTTATATAGTTCA+TGG | + | chr4_1:57970628-57970647 | None:intergenic | 15.0% |
| !! | AATAATAATTATTAACTCGA+CGG | - | chr4_1:57970728-57970747 | Msa0558930:intron | 15.0% |
| !!! | TAAATTGATAGTTTATTCAA+TGG | - | chr4_1:57970795-57970814 | Msa0558930:CDS | 15.0% |
| !!! | AGTTTTTAATTAGTACATTA+TGG | - | chr4_1:57970844-57970863 | Msa0558930:CDS | 15.0% |
| !!! | ATTCTATTTTTGTTATTTTC+AGG | - | chr4_1:57971503-57971522 | Msa0558930:CDS | 15.0% |
| !! | GAGATAATGATATATAGTTT+AGG | + | chr4_1:57970594-57970613 | None:intergenic | 20.0% |
| !!! | ATATGTTCTTTTAGTAATGT+TGG | - | chr4_1:57971126-57971145 | Msa0558930:intron | 20.0% |
| !!! | TATGTTCTTTTAGTAATGTT+GGG | - | chr4_1:57971127-57971146 | Msa0558930:intron | 20.0% |
| !! | GAGATAATGATATATAGTTT+AGG | + | chr4_1:57970594-57970613 | None:intergenic | 20.0% |
| !!! | ATATGTTCTTTTAGTAATGT+TGG | - | chr4_1:57971126-57971145 | Msa0558930:intron | 20.0% |
| !!! | TATGTTCTTTTAGTAATGTT+GGG | - | chr4_1:57971127-57971146 | Msa0558930:intron | 20.0% |
| !! | ATATAGTTTAGGGCATTTAA+TGG | + | chr4_1:57970583-57970602 | None:intergenic | 25.0% |
| ! | TGAAACATTTCATAGACATT+AGG | + | chr4_1:57970657-57970676 | None:intergenic | 25.0% |
| !! | TGTTGATGAGATGAATAAAA+TGG | - | chr4_1:57971042-57971061 | Msa0558930:intron | 25.0% |
| !! | GTTGATGAGATGAATAAAAT+GGG | - | chr4_1:57971043-57971062 | Msa0558930:intron | 25.0% |
| ! | TTGATGAGATGAATAAAATG+GGG | - | chr4_1:57971044-57971063 | Msa0558930:intron | 25.0% |
| !! | ATGTTCTTTTAGTAATGTTG+GGG | - | chr4_1:57971128-57971147 | Msa0558930:intron | 25.0% |
| ! | GAATGATTTGAACATTGAAA+TGG | - | chr4_1:57971265-57971284 | Msa0558930:intron | 25.0% |
| !!! | TTTTTGTTATTTTCAGGACA+TGG | - | chr4_1:57971509-57971528 | Msa0558930:CDS | 25.0% |
| !!! | TTTTGTTATTTTCAGGACAT+GGG | - | chr4_1:57971510-57971529 | Msa0558930:CDS | 25.0% |
| !! | ATATAGTTTAGGGCATTTAA+TGG | + | chr4_1:57970583-57970602 | None:intergenic | 25.0% |
| ! | TGAAACATTTCATAGACATT+AGG | + | chr4_1:57970657-57970676 | None:intergenic | 25.0% |
| !! | TGTTGATGAGATGAATAAAA+TGG | - | chr4_1:57971042-57971061 | Msa0558930:intron | 25.0% |
| !! | GTTGATGAGATGAATAAAAT+GGG | - | chr4_1:57971043-57971062 | Msa0558930:intron | 25.0% |
| ! | TTGATGAGATGAATAAAATG+GGG | - | chr4_1:57971044-57971063 | Msa0558930:intron | 25.0% |
| !! | ATGTTCTTTTAGTAATGTTG+GGG | - | chr4_1:57971128-57971147 | Msa0558930:intron | 25.0% |
| ! | GAATGATTTGAACATTGAAA+TGG | - | chr4_1:57971265-57971284 | Msa0558930:intron | 25.0% |
| !!! | TTTTTGTTATTTTCAGGACA+TGG | - | chr4_1:57971509-57971528 | Msa0558930:CDS | 25.0% |
| !!! | TTTTGTTATTTTCAGGACAT+GGG | - | chr4_1:57971510-57971529 | Msa0558930:CDS | 25.0% |
| ! | ACGGATTTTCATACACTATA+TGG | + | chr4_1:57970687-57970706 | None:intergenic | 30.0% |
| TATAGATCATGAGACTCATT+AGG | + | chr4_1:57971109-57971128 | None:intergenic | 30.0% | |
| TTGATACTTTCTATAGGAAG+AGG | - | chr4_1:57971151-57971170 | Msa0558930:intron | 30.0% | |
| ! | ACGGATTTTCATACACTATA+TGG | + | chr4_1:57970687-57970706 | None:intergenic | 30.0% |
| TATAGATCATGAGACTCATT+AGG | + | chr4_1:57971109-57971128 | None:intergenic | 30.0% | |
| TTGATACTTTCTATAGGAAG+AGG | - | chr4_1:57971151-57971170 | Msa0558930:intron | 30.0% | |
| CAATAGACTATGTGTGTCTA+TGG | - | chr4_1:57970302-57970321 | Msa0558930:CDS | 35.0% | |
| TTGGGTTTCAATGCTGAAAA+TGG | - | chr4_1:57970330-57970349 | Msa0558930:intron | 35.0% | |
| ATGCTGAAAATGGTAGCAAT+AGG | - | chr4_1:57970340-57970359 | Msa0558930:intron | 35.0% | |
| TGCTGAAAATGGTAGCAATA+GGG | - | chr4_1:57970341-57970360 | Msa0558930:intron | 35.0% | |
| TTGGAACACCATCATTATCA+CGG | + | chr4_1:57970389-57970408 | None:intergenic | 35.0% | |
| ! | TTCTTGGATGTGAACACTTT+TGG | + | chr4_1:57970408-57970427 | None:intergenic | 35.0% |
| TTCTCTTTCTTTCTGTCTCA+AGG | + | chr4_1:57970431-57970450 | None:intergenic | 35.0% | |
| TTGAGACAGAAAGAAAGAGA+AGG | - | chr4_1:57970430-57970449 | Msa0558930:intron | 35.0% | |
| TGAGACAGAAAGAAAGAGAA+GGG | - | chr4_1:57970431-57970450 | Msa0558930:intron | 35.0% | |
| GTGCTTACATTTGTGATGAT+TGG | + | chr4_1:57970498-57970517 | None:intergenic | 35.0% | |
| GATGTTGGAGACTAAATTGA+CGG | + | chr4_1:57970706-57970725 | None:intergenic | 35.0% | |
| GAACAAAGCAAGCATTATTG+AGG | - | chr4_1:57970901-57970920 | Msa0558930:CDS | 35.0% | |
| AACTTCATGTTGCAACTTCA+TGG | + | chr4_1:57970942-57970961 | None:intergenic | 35.0% | |
| ! | TCAACTCTTTTCTCTCTTCT+TGG | + | chr4_1:57970998-57971017 | None:intergenic | 35.0% |
| GATGAATAAAATGGGGTTAC+AGG | - | chr4_1:57971051-57971070 | Msa0558930:intron | 35.0% | |
| !! | TTGGGGTTGATACTTTCTAT+AGG | - | chr4_1:57971145-57971164 | Msa0558930:intron | 35.0% |
| !! | AAGTTGATGGGAATAAGCTA+TGG | - | chr4_1:57971186-57971205 | Msa0558930:intron | 35.0% |
| TTGCTCATTGAGAAGAAAAG+AGG | - | chr4_1:57971215-57971234 | Msa0558930:intron | 35.0% | |
| TCATTGAGAAGAAAAGAGGA+AGG | - | chr4_1:57971219-57971238 | Msa0558930:intron | 35.0% | |
| AATTTATAGTGTCACCTGCA+AGG | + | chr4_1:57971339-57971358 | None:intergenic | 35.0% | |
| GGAATTCGATAAAGTTCAAG+TGG | + | chr4_1:57971543-57971562 | None:intergenic | 35.0% | |
| CAATAGACTATGTGTGTCTA+TGG | - | chr4_1:57970302-57970321 | Msa0558930:CDS | 35.0% | |
| TTGGGTTTCAATGCTGAAAA+TGG | - | chr4_1:57970330-57970349 | Msa0558930:intron | 35.0% | |
| ATGCTGAAAATGGTAGCAAT+AGG | - | chr4_1:57970340-57970359 | Msa0558930:intron | 35.0% | |
| TGCTGAAAATGGTAGCAATA+GGG | - | chr4_1:57970341-57970360 | Msa0558930:intron | 35.0% | |
| TTGGAACACCATCATTATCA+CGG | + | chr4_1:57970389-57970408 | None:intergenic | 35.0% | |
| ! | TTCTTGGATGTGAACACTTT+TGG | + | chr4_1:57970408-57970427 | None:intergenic | 35.0% |
| TTCTCTTTCTTTCTGTCTCA+AGG | + | chr4_1:57970431-57970450 | None:intergenic | 35.0% | |
| TTGAGACAGAAAGAAAGAGA+AGG | - | chr4_1:57970430-57970449 | Msa0558930:intron | 35.0% | |
| TGAGACAGAAAGAAAGAGAA+GGG | - | chr4_1:57970431-57970450 | Msa0558930:intron | 35.0% | |
| GTGCTTACATTTGTGATGAT+TGG | + | chr4_1:57970498-57970517 | None:intergenic | 35.0% | |
| GATGTTGGAGACTAAATTGA+CGG | + | chr4_1:57970706-57970725 | None:intergenic | 35.0% | |
| GAACAAAGCAAGCATTATTG+AGG | - | chr4_1:57970901-57970920 | Msa0558930:CDS | 35.0% | |
| AACTTCATGTTGCAACTTCA+TGG | + | chr4_1:57970942-57970961 | None:intergenic | 35.0% | |
| ! | TCAACTCTTTTCTCTCTTCT+TGG | + | chr4_1:57970998-57971017 | None:intergenic | 35.0% |
| GATGAATAAAATGGGGTTAC+AGG | - | chr4_1:57971051-57971070 | Msa0558930:intron | 35.0% | |
| !! | TTGGGGTTGATACTTTCTAT+AGG | - | chr4_1:57971145-57971164 | Msa0558930:intron | 35.0% |
| !! | AAGTTGATGGGAATAAGCTA+TGG | - | chr4_1:57971186-57971205 | Msa0558930:intron | 35.0% |
| TTGCTCATTGAGAAGAAAAG+AGG | - | chr4_1:57971215-57971234 | Msa0558930:intron | 35.0% | |
| TCATTGAGAAGAAAAGAGGA+AGG | - | chr4_1:57971219-57971238 | Msa0558930:intron | 35.0% | |
| AATTTATAGTGTCACCTGCA+AGG | + | chr4_1:57971339-57971358 | None:intergenic | 35.0% | |
| GGAATTCGATAAAGTTCAAG+TGG | + | chr4_1:57971543-57971562 | None:intergenic | 35.0% | |
| ATGTGTGTCTATGGAAGAGT+TGG | - | chr4_1:57970311-57970330 | Msa0558930:CDS | 40.0% | |
| TGTGTGTCTATGGAAGAGTT+GGG | - | chr4_1:57970312-57970331 | Msa0558930:CDS | 40.0% | |
| GCTGAAAATGGTAGCAATAG+GGG | - | chr4_1:57970342-57970361 | Msa0558930:intron | 40.0% | |
| ! | AACAAGCACCGTGATAATGA+TGG | - | chr4_1:57970378-57970397 | Msa0558930:intron | 40.0% |
| TCTTTCTGTCTCAAGGTTCT+TGG | + | chr4_1:57970424-57970443 | None:intergenic | 40.0% | |
| ! | GAAACTCACTAGCAGACTTT+TGG | - | chr4_1:57970455-57970474 | Msa0558930:intron | 40.0% |
| AGTCTCACAATAGAGCTTGA+TGG | - | chr4_1:57970965-57970984 | Msa0558930:intron | 40.0% | |
| CACAATAGAGCTTGATGGAA+TGG | - | chr4_1:57970970-57970989 | Msa0558930:intron | 40.0% | |
| !! | GCAGAAGACTCTCTTTGTTT+TGG | + | chr4_1:57971022-57971041 | None:intergenic | 40.0% |
| ! | TGCAGGTAGCAAAAGTTGAT+GGG | - | chr4_1:57971174-57971193 | Msa0558930:intron | 40.0% |
| AGACCTCAGTGTTACAACTA+TGG | - | chr4_1:57971289-57971308 | Msa0558930:intron | 40.0% | |
| !!! | TGTTATTTTCAGGACATGGG+TGG | - | chr4_1:57971513-57971532 | Msa0558930:CDS | 40.0% |
| ATGTGTGTCTATGGAAGAGT+TGG | - | chr4_1:57970311-57970330 | Msa0558930:CDS | 40.0% | |
| TGTGTGTCTATGGAAGAGTT+GGG | - | chr4_1:57970312-57970331 | Msa0558930:CDS | 40.0% | |
| GCTGAAAATGGTAGCAATAG+GGG | - | chr4_1:57970342-57970361 | Msa0558930:intron | 40.0% | |
| ! | AACAAGCACCGTGATAATGA+TGG | - | chr4_1:57970378-57970397 | Msa0558930:intron | 40.0% |
| TCTTTCTGTCTCAAGGTTCT+TGG | + | chr4_1:57970424-57970443 | None:intergenic | 40.0% | |
| ! | GAAACTCACTAGCAGACTTT+TGG | - | chr4_1:57970455-57970474 | Msa0558930:intron | 40.0% |
| AGTCTCACAATAGAGCTTGA+TGG | - | chr4_1:57970965-57970984 | Msa0558930:intron | 40.0% | |
| CACAATAGAGCTTGATGGAA+TGG | - | chr4_1:57970970-57970989 | Msa0558930:intron | 40.0% | |
| !! | GCAGAAGACTCTCTTTGTTT+TGG | + | chr4_1:57971022-57971041 | None:intergenic | 40.0% |
| ! | TGCAGGTAGCAAAAGTTGAT+GGG | - | chr4_1:57971174-57971193 | Msa0558930:intron | 40.0% |
| AGACCTCAGTGTTACAACTA+TGG | - | chr4_1:57971289-57971308 | Msa0558930:intron | 40.0% | |
| !!! | TGTTATTTTCAGGACATGGG+TGG | - | chr4_1:57971513-57971532 | Msa0558930:CDS | 40.0% |
| ATGGTAGCAATAGGGGAAAC+TGG | - | chr4_1:57970349-57970368 | Msa0558930:intron | 45.0% | |
| !!! | CTAGCAGACTTTTGGTGCTT+AGG | - | chr4_1:57970463-57970482 | Msa0558930:intron | 45.0% |
| ! | CTTTCTATAGGAAGAGGTGC+AGG | - | chr4_1:57971157-57971176 | Msa0558930:intron | 45.0% |
| GTGCAGGTAGCAAAAGTTGA+TGG | - | chr4_1:57971173-57971192 | Msa0558930:intron | 45.0% | |
| CTGCCATAGTTGTAACACTG+AGG | + | chr4_1:57971295-57971314 | None:intergenic | 45.0% | |
| CTCAGTGTTACAACTATGGC+AGG | - | chr4_1:57971293-57971312 | Msa0558930:intron | 45.0% | |
| TTATAGTGTCACCTGCAAGG+AGG | + | chr4_1:57971336-57971355 | None:intergenic | 45.0% | |
| ATGGTAGCAATAGGGGAAAC+TGG | - | chr4_1:57970349-57970368 | Msa0558930:intron | 45.0% | |
| !!! | CTAGCAGACTTTTGGTGCTT+AGG | - | chr4_1:57970463-57970482 | Msa0558930:intron | 45.0% |
| ! | CTTTCTATAGGAAGAGGTGC+AGG | - | chr4_1:57971157-57971176 | Msa0558930:intron | 45.0% |
| GTGCAGGTAGCAAAAGTTGA+TGG | - | chr4_1:57971173-57971192 | Msa0558930:intron | 45.0% | |
| CTGCCATAGTTGTAACACTG+AGG | + | chr4_1:57971295-57971314 | None:intergenic | 45.0% | |
| CTCAGTGTTACAACTATGGC+AGG | - | chr4_1:57971293-57971312 | Msa0558930:intron | 45.0% | |
| TTATAGTGTCACCTGCAAGG+AGG | + | chr4_1:57971336-57971355 | None:intergenic | 45.0% | |
| GCAATAGGGGAAACTGGAGA+AGG | - | chr4_1:57970355-57970374 | Msa0558930:intron | 50.0% | |
| TCTCATTACAGCCTCCTTGC+AGG | - | chr4_1:57971322-57971341 | Msa0558930:intron | 50.0% | |
| GCAATAGGGGAAACTGGAGA+AGG | - | chr4_1:57970355-57970374 | Msa0558930:intron | 50.0% | |
| TCTCATTACAGCCTCCTTGC+AGG | - | chr4_1:57971322-57971341 | Msa0558930:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57970285 | 57971581 | 57970285 | ID=Msa0558930;Name=Msa0558930 |
| chr4_1 | mRNA | 57970285 | 57971581 | 57970285 | ID=Msa0558930-mRNA-1;Parent=Msa0558930;Name=Msa0558930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|210 |
| chr4_1 | exon | 57971357 | 57971581 | 57971357 | ID=Msa0558930-mRNA-1:exon:17629;Parent=Msa0558930-mRNA-1 |
| chr4_1 | exon | 57970794 | 57970967 | 57970794 | ID=Msa0558930-mRNA-1:exon:17628;Parent=Msa0558930-mRNA-1 |
| chr4_1 | exon | 57970523 | 57970699 | 57970523 | ID=Msa0558930-mRNA-1:exon:17627;Parent=Msa0558930-mRNA-1 |
| chr4_1 | exon | 57970285 | 57970341 | 57970285 | ID=Msa0558930-mRNA-1:exon:17626;Parent=Msa0558930-mRNA-1 |
| chr4_1 | CDS | 57971357 | 57971581 | 57971357 | ID=Msa0558930-mRNA-1:cds;Parent=Msa0558930-mRNA-1 |
| chr4_1 | CDS | 57970794 | 57970967 | 57970794 | ID=Msa0558930-mRNA-1:cds;Parent=Msa0558930-mRNA-1 |
| chr4_1 | CDS | 57970523 | 57970699 | 57970523 | ID=Msa0558930-mRNA-1:cds;Parent=Msa0558930-mRNA-1 |
| chr4_1 | CDS | 57970285 | 57970341 | 57970285 | ID=Msa0558930-mRNA-1:cds;Parent=Msa0558930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
