Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559000 | XP_024636481.1 | 83.616 | 177 | 19 | 1 | 4 | 180 | 39 | 205 | 1.05e-96 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559000 | sp|O81900|DYT1_ARATH | 40.782 | 179 | 98 | 2 | 7 | 179 | 29 | 205 | 4.37e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559000 | A0A072UQ30 | 81.356 | 177 | 17 | 1 | 4 | 180 | 39 | 199 | 1.62e-93 | 280 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0559000 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559000 | MtrunA17_Chr4g0048851 | 52.326 | 172 | 80 | 1 | 3 | 174 | 40 | 209 | 1.04e-59 | 185 |
| Msa0559000 | MtrunA17_Chr4g0048891 | 84.211 | 95 | 15 | 0 | 4 | 98 | 39 | 133 | 9.81e-52 | 162 |
| Msa0559000 | MtrunA17_Chr1g0211081 | 32.222 | 180 | 89 | 4 | 9 | 157 | 316 | 493 | 1.91e-20 | 87.8 |
| Msa0559000 | MtrunA17_Chr8g0365711 | 33.548 | 155 | 95 | 3 | 5 | 151 | 239 | 393 | 2.45e-20 | 87.0 |
| Msa0559000 | MtrunA17_Chr2g0298751 | 32.530 | 166 | 96 | 4 | 9 | 158 | 51 | 216 | 5.03e-15 | 70.5 |
| Msa0559000 | MtrunA17_Chr3g0131691 | 26.923 | 182 | 116 | 2 | 9 | 175 | 297 | 476 | 1.89e-13 | 67.4 |
| Msa0559000 | MtrunA17_Chr7g0252041 | 24.684 | 158 | 104 | 1 | 9 | 151 | 285 | 442 | 1.54e-12 | 64.7 |
| Msa0559000 | MtrunA17_Chr4g0028071 | 28.947 | 152 | 99 | 4 | 9 | 153 | 148 | 297 | 2.18e-12 | 63.9 |
| Msa0559000 | MtrunA17_Chr8g0346161 | 30.282 | 142 | 85 | 5 | 14 | 146 | 295 | 431 | 2.28e-11 | 61.6 |
| Msa0559000 | MtrunA17_Chr2g0320291 | 29.012 | 162 | 102 | 5 | 9 | 163 | 132 | 287 | 2.69e-11 | 60.8 |
| Msa0559000 | MtrunA17_Chr1g0185621 | 27.174 | 184 | 109 | 4 | 14 | 177 | 479 | 657 | 6.93e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559000 | AT4G21330.1 | 40.782 | 179 | 98 | 2 | 7 | 179 | 29 | 205 | 4.44e-35 | 122 |
| Msa0559000 | AT2G16910.1 | 34.783 | 161 | 80 | 2 | 9 | 144 | 313 | 473 | 1.63e-21 | 91.3 |
| Msa0559000 | AT1G10610.3 | 32.432 | 148 | 91 | 3 | 7 | 146 | 164 | 310 | 2.15e-16 | 75.9 |
| Msa0559000 | AT1G10610.2 | 32.432 | 148 | 91 | 3 | 7 | 146 | 231 | 377 | 2.71e-16 | 75.9 |
| Msa0559000 | AT1G10610.1 | 32.432 | 148 | 91 | 3 | 7 | 146 | 261 | 407 | 3.85e-16 | 75.5 |
| Msa0559000 | AT5G57150.5 | 32.919 | 161 | 96 | 3 | 9 | 157 | 53 | 213 | 1.44e-14 | 69.3 |
| Msa0559000 | AT5G57150.3 | 32.919 | 161 | 96 | 3 | 9 | 157 | 54 | 214 | 1.98e-14 | 68.9 |
| Msa0559000 | AT5G57150.2 | 32.919 | 161 | 96 | 3 | 9 | 157 | 54 | 214 | 2.04e-14 | 68.9 |
| Msa0559000 | AT5G57150.1 | 32.716 | 162 | 97 | 3 | 9 | 158 | 53 | 214 | 2.68e-14 | 68.9 |
| Msa0559000 | AT5G57150.4 | 32.919 | 161 | 96 | 3 | 9 | 157 | 54 | 214 | 3.56e-14 | 68.9 |
| Msa0559000 | AT1G12860.1 | 28.289 | 152 | 100 | 2 | 9 | 151 | 266 | 417 | 5.27e-14 | 69.3 |
| Msa0559000 | AT1G12860.2 | 28.289 | 152 | 100 | 2 | 9 | 151 | 266 | 417 | 6.30e-14 | 69.3 |
| Msa0559000 | AT4G29930.1 | 27.586 | 174 | 102 | 2 | 9 | 158 | 53 | 226 | 9.44e-14 | 67.8 |
| Msa0559000 | AT4G29930.3 | 27.746 | 173 | 101 | 2 | 9 | 157 | 53 | 225 | 1.22e-13 | 67.4 |
| Msa0559000 | AT4G29930.7 | 27.746 | 173 | 101 | 2 | 9 | 157 | 53 | 225 | 1.22e-13 | 67.4 |
| Msa0559000 | AT4G29930.6 | 28.477 | 151 | 104 | 2 | 9 | 158 | 53 | 200 | 1.38e-13 | 66.6 |
| Msa0559000 | AT4G29930.2 | 29.139 | 151 | 100 | 3 | 9 | 158 | 53 | 197 | 4.93e-13 | 65.1 |
| Msa0559000 | AT4G29930.5 | 29.333 | 150 | 99 | 3 | 9 | 157 | 53 | 196 | 8.63e-13 | 64.7 |
| Msa0559000 | AT3G26744.6 | 27.564 | 156 | 100 | 2 | 9 | 151 | 306 | 461 | 1.69e-12 | 65.1 |
| Msa0559000 | AT4G29930.4 | 38.298 | 94 | 49 | 1 | 9 | 93 | 53 | 146 | 1.75e-12 | 63.2 |
| Msa0559000 | AT3G26744.1 | 27.564 | 156 | 100 | 2 | 9 | 151 | 306 | 461 | 1.75e-12 | 65.1 |
| Msa0559000 | AT3G26744.4 | 27.564 | 156 | 100 | 2 | 9 | 151 | 306 | 461 | 1.75e-12 | 65.1 |
| Msa0559000 | AT3G26744.2 | 27.564 | 156 | 100 | 2 | 9 | 151 | 306 | 461 | 1.75e-12 | 65.1 |
| Msa0559000 | AT4G17880.1 | 28.916 | 166 | 112 | 4 | 14 | 175 | 420 | 583 | 6.37e-11 | 60.5 |
Find 20 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGACTATGAATGATTT+AGG | 0.220770 | 4_1:-58011290 | Msa0559000:CDS |
| CCCAATGTAACAACCATAAA+AGG | 0.285457 | 4_1:-58011251 | Msa0559000:CDS |
| AGGAGGGTTCAAGAAATTAA+TGG | 0.301353 | 4_1:-58011309 | Msa0559000:CDS |
| CTGACCCAGTGTTCTTTGAT+AGG | 0.310935 | 4_1:+58011885 | None:intergenic |
| TCTAATTACAACTTTCATAA+AGG | 0.324484 | 4_1:-58011222 | Msa0559000:intron |
| AGACCGAAGCATGAAGAGTT+TGG | 0.389720 | 4_1:+58011835 | None:intergenic |
| GTGGTTACATTTGTGACCAT+TGG | 0.476973 | 4_1:+58011806 | None:intergenic |
| ATACCAAACTCTTCATGCTT+CGG | 0.491967 | 4_1:-58011838 | Msa0559000:CDS |
| AAGAAGTACTATAATGAAGA+TGG | 0.534455 | 4_1:-58011918 | None:intergenic |
| CACGCAAGAGCTTCAAGCAA+TGG | 0.537500 | 4_1:-58011581 | Msa0559000:CDS |
| GCTTCGGTCTTTAGTACCAA+TGG | 0.541325 | 4_1:-58011822 | Msa0559000:CDS |
| ACACTGGGTCAGAAAGAAAG+AGG | 0.564246 | 4_1:-58011874 | Msa0559000:CDS |
| ATCTTTGAGAACAAGAGAGG+AGG | 0.564401 | 4_1:-58011326 | Msa0559000:CDS |
| GTGTTCCTATCAAAGAACAC+TGG | 0.568463 | 4_1:-58011890 | Msa0559000:CDS |
| TCTTTGAGAACAAGAGAGGA+GGG | 0.579294 | 4_1:-58011325 | Msa0559000:CDS |
| TCTATAGGAAGAGGTTCAAG+TGG | 0.597575 | 4_1:-58011384 | Msa0559000:intron |
| ATGATCTTTGAGAACAAGAG+AGG | 0.626104 | 4_1:-58011329 | Msa0559000:CDS |
| TTGACTTGATGAACATCAAG+TGG | 0.631805 | 4_1:+58010538 | None:intergenic |
| TGTTCCTATCAAAGAACACT+GGG | 0.634820 | 4_1:-58011889 | Msa0559000:CDS |
| GGTCAGAAAGAAAGAGGAGA+CGG | 0.643508 | 4_1:-58011868 | Msa0559000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTATGAATCTTAATTT+TGG | - | chr4_1:58010728-58010747 | Msa0559000:intron | 15.0% |
| !! | TAGTTATATGATATTAATTG+TGG | + | chr4_1:58011234-58011253 | None:intergenic | 15.0% |
| !!! | AAACGAAATCAATTTTAATA+TGG | + | chr4_1:58011350-58011369 | None:intergenic | 15.0% |
| !!! | GATTTTATGAATCTTAATTT+TGG | - | chr4_1:58010728-58010747 | Msa0559000:intron | 15.0% |
| !! | TAGTTATATGATATTAATTG+TGG | + | chr4_1:58011234-58011253 | None:intergenic | 15.0% |
| !!! | AAACGAAATCAATTTTAATA+TGG | + | chr4_1:58011350-58011369 | None:intergenic | 15.0% |
| !! | TTTCTATATATTCATTTCCT+TGG | - | chr4_1:58010664-58010683 | Msa0559000:intron | 20.0% |
| !! | TCATTTAGTTAATTCATGAA+AGG | + | chr4_1:58010957-58010976 | None:intergenic | 20.0% |
| !! | ATTAATAAGTAATCTTTCTG+TGG | - | chr4_1:58010996-58011015 | Msa0559000:intron | 20.0% |
| !! | TCTAATTACAACTTTCATAA+AGG | - | chr4_1:58011187-58011206 | Msa0559000:intron | 20.0% |
| !! | ATAACTATTAGAAAAGACTA+TGG | - | chr4_1:58011247-58011266 | Msa0559000:CDS | 20.0% |
| !! | TAACTATTAGAAAAGACTAT+GGG | - | chr4_1:58011248-58011267 | Msa0559000:CDS | 20.0% |
| !!! | CAATTTTTAGGCTTTAAAAA+GGG | + | chr4_1:58011285-58011304 | None:intergenic | 20.0% |
| !!! | ACAATTTTTAGGCTTTAAAA+AGG | + | chr4_1:58011286-58011305 | None:intergenic | 20.0% |
| !!! | CCTCTAAAAAAACAATTTTT+AGG | + | chr4_1:58011297-58011316 | None:intergenic | 20.0% |
| !!! | CCTAAAAATTGTTTTTTTAG+AGG | - | chr4_1:58011294-58011313 | Msa0559000:CDS | 20.0% |
| !!! | TTCAACTCATTTTACAAATA+TGG | - | chr4_1:58011446-58011465 | Msa0559000:intron | 20.0% |
| !! | ACAAATCAAAGATTATGTAA+TGG | + | chr4_1:58011576-58011595 | None:intergenic | 20.0% |
| !! | AGAGTAATAAATATTTCTCA+AGG | + | chr4_1:58011626-58011645 | None:intergenic | 20.0% |
| !! | TCAAACAAAATTGTTGTATT+TGG | + | chr4_1:58011714-58011733 | None:intergenic | 20.0% |
| !! | TTTCTATATATTCATTTCCT+TGG | - | chr4_1:58010664-58010683 | Msa0559000:intron | 20.0% |
| !! | TCATTTAGTTAATTCATGAA+AGG | + | chr4_1:58010957-58010976 | None:intergenic | 20.0% |
| !! | ATTAATAAGTAATCTTTCTG+TGG | - | chr4_1:58010996-58011015 | Msa0559000:intron | 20.0% |
| !! | TCTAATTACAACTTTCATAA+AGG | - | chr4_1:58011187-58011206 | Msa0559000:intron | 20.0% |
| !! | ATAACTATTAGAAAAGACTA+TGG | - | chr4_1:58011247-58011266 | Msa0559000:CDS | 20.0% |
| !! | TAACTATTAGAAAAGACTAT+GGG | - | chr4_1:58011248-58011267 | Msa0559000:CDS | 20.0% |
| !!! | CAATTTTTAGGCTTTAAAAA+GGG | + | chr4_1:58011285-58011304 | None:intergenic | 20.0% |
| !!! | ACAATTTTTAGGCTTTAAAA+AGG | + | chr4_1:58011286-58011305 | None:intergenic | 20.0% |
| !!! | CCTCTAAAAAAACAATTTTT+AGG | + | chr4_1:58011297-58011316 | None:intergenic | 20.0% |
| !!! | CCTAAAAATTGTTTTTTTAG+AGG | - | chr4_1:58011294-58011313 | Msa0559000:CDS | 20.0% |
| !!! | TTCAACTCATTTTACAAATA+TGG | - | chr4_1:58011446-58011465 | Msa0559000:intron | 20.0% |
| !! | ACAAATCAAAGATTATGTAA+TGG | + | chr4_1:58011576-58011595 | None:intergenic | 20.0% |
| !! | AGAGTAATAAATATTTCTCA+AGG | + | chr4_1:58011626-58011645 | None:intergenic | 20.0% |
| !! | TCAAACAAAATTGTTGTATT+TGG | + | chr4_1:58011714-58011733 | None:intergenic | 20.0% |
| ! | ACAAACTAAAAACTAAACCA+AGG | + | chr4_1:58010684-58010703 | None:intergenic | 25.0% |
| !! | GCAGAAAAATCATCTAATTT+TGG | + | chr4_1:58010886-58010905 | None:intergenic | 25.0% |
| !! | AATTAGATATGCTCCTTTTA+TGG | + | chr4_1:58011174-58011193 | None:intergenic | 25.0% |
| ! | TTACGAGTAAATATCACATT+TGG | + | chr4_1:58011418-58011437 | None:intergenic | 25.0% |
| ! | GTAATAAATATTTCTCAAGG+TGG | + | chr4_1:58011623-58011642 | None:intergenic | 25.0% |
| ! | ACAAACTAAAAACTAAACCA+AGG | + | chr4_1:58010684-58010703 | None:intergenic | 25.0% |
| !! | GCAGAAAAATCATCTAATTT+TGG | + | chr4_1:58010886-58010905 | None:intergenic | 25.0% |
| !! | AATTAGATATGCTCCTTTTA+TGG | + | chr4_1:58011174-58011193 | None:intergenic | 25.0% |
| ! | TTACGAGTAAATATCACATT+TGG | + | chr4_1:58011418-58011437 | None:intergenic | 25.0% |
| ! | GTAATAAATATTTCTCAAGG+TGG | + | chr4_1:58011623-58011642 | None:intergenic | 25.0% |
| TAAGAAGATGAGTGAAGTTT+AGG | + | chr4_1:58010628-58010647 | None:intergenic | 30.0% | |
| GGAAGCAAAAGAAAAATATG+AGG | - | chr4_1:58010849-58010868 | Msa0559000:intron | 30.0% | |
| TGCAGAAGAGATGAAAAAAT+GGG | - | chr4_1:58010906-58010925 | Msa0559000:intron | 30.0% | |
| ATGGAGACTATGAATGATTT+AGG | - | chr4_1:58011119-58011138 | Msa0559000:intron | 30.0% | |
| ! | CCTTTTATGGTTGTTACATT+GGG | + | chr4_1:58011161-58011180 | None:intergenic | 30.0% |
| ! | TCCTTTTATGGTTGTTACAT+TGG | + | chr4_1:58011162-58011181 | None:intergenic | 30.0% |
| ! | ATAAATGCAACGTTTTTGTG+TGG | - | chr4_1:58011810-58011829 | Msa0559000:intron | 30.0% |
| ! | TTTTTGTGTGGATTCAATGT+TGG | - | chr4_1:58011822-58011841 | Msa0559000:CDS | 30.0% |
| !!! | TTCAATGTTGGTAATTTTCC+AGG | - | chr4_1:58011834-58011853 | Msa0559000:CDS | 30.0% |
| !!! | TCAATGTTGGTAATTTTCCA+GGG | - | chr4_1:58011835-58011854 | Msa0559000:CDS | 30.0% |
| TAAGAAGATGAGTGAAGTTT+AGG | + | chr4_1:58010628-58010647 | None:intergenic | 30.0% | |
| GGAAGCAAAAGAAAAATATG+AGG | - | chr4_1:58010849-58010868 | Msa0559000:intron | 30.0% | |
| TGCAGAAGAGATGAAAAAAT+GGG | - | chr4_1:58010906-58010925 | Msa0559000:intron | 30.0% | |
| ATGGAGACTATGAATGATTT+AGG | - | chr4_1:58011119-58011138 | Msa0559000:intron | 30.0% | |
| ! | CCTTTTATGGTTGTTACATT+GGG | + | chr4_1:58011161-58011180 | None:intergenic | 30.0% |
| ! | TCCTTTTATGGTTGTTACAT+TGG | + | chr4_1:58011162-58011181 | None:intergenic | 30.0% |
| ! | ATAAATGCAACGTTTTTGTG+TGG | - | chr4_1:58011810-58011829 | Msa0559000:intron | 30.0% |
| ! | TTTTTGTGTGGATTCAATGT+TGG | - | chr4_1:58011822-58011841 | Msa0559000:CDS | 30.0% |
| !!! | TTCAATGTTGGTAATTTTCC+AGG | - | chr4_1:58011834-58011853 | Msa0559000:CDS | 30.0% |
| !!! | TCAATGTTGGTAATTTTCCA+GGG | - | chr4_1:58011835-58011854 | Msa0559000:CDS | 30.0% |
| TGTTCCTATCAAAGAACACT+GGG | - | chr4_1:58010520-58010539 | Msa0559000:CDS | 35.0% | |
| ATACCAAACTCTTCATGCTT+CGG | - | chr4_1:58010571-58010590 | Msa0559000:intron | 35.0% | |
| CTGCAGAAGAGATGAAAAAA+TGG | - | chr4_1:58010905-58010924 | Msa0559000:intron | 35.0% | |
| GCAGAAGAGATGAAAAAATG+GGG | - | chr4_1:58010907-58010926 | Msa0559000:intron | 35.0% | |
| CAGAAGAGATGAAAAAATGG+GGG | - | chr4_1:58010908-58010927 | Msa0559000:intron | 35.0% | |
| ! | TTTCTGTGGTTGCTTTCTAT+AGG | - | chr4_1:58011010-58011029 | Msa0559000:intron | 35.0% |
| AGAGGTTCAAGTGGAAAAAA+TGG | - | chr4_1:58011034-58011053 | Msa0559000:intron | 35.0% | |
| GTTCAAGTGGAAAAAATGGA+TGG | - | chr4_1:58011038-58011057 | Msa0559000:intron | 35.0% | |
| ! | ATGATCTTTGAGAACAAGAG+AGG | - | chr4_1:58011080-58011099 | Msa0559000:intron | 35.0% |
| AGGAGGGTTCAAGAAATTAA+TGG | - | chr4_1:58011100-58011119 | Msa0559000:intron | 35.0% | |
| CCCAATGTAACAACCATAAA+AGG | - | chr4_1:58011158-58011177 | Msa0559000:intron | 35.0% | |
| !! | TTGGTAATTTTCCAGGGAAT+GGG | - | chr4_1:58011841-58011860 | Msa0559000:CDS | 35.0% |
| ! | TTGACTTGATGAACATCAAG+TGG | + | chr4_1:58011874-58011893 | None:intergenic | 35.0% |
| TGTTCCTATCAAAGAACACT+GGG | - | chr4_1:58010520-58010539 | Msa0559000:CDS | 35.0% | |
| ATACCAAACTCTTCATGCTT+CGG | - | chr4_1:58010571-58010590 | Msa0559000:intron | 35.0% | |
| CTGCAGAAGAGATGAAAAAA+TGG | - | chr4_1:58010905-58010924 | Msa0559000:intron | 35.0% | |
| GCAGAAGAGATGAAAAAATG+GGG | - | chr4_1:58010907-58010926 | Msa0559000:intron | 35.0% | |
| CAGAAGAGATGAAAAAATGG+GGG | - | chr4_1:58010908-58010927 | Msa0559000:intron | 35.0% | |
| ! | TTTCTGTGGTTGCTTTCTAT+AGG | - | chr4_1:58011010-58011029 | Msa0559000:intron | 35.0% |
| AGAGGTTCAAGTGGAAAAAA+TGG | - | chr4_1:58011034-58011053 | Msa0559000:intron | 35.0% | |
| GTTCAAGTGGAAAAAATGGA+TGG | - | chr4_1:58011038-58011057 | Msa0559000:intron | 35.0% | |
| ! | ATGATCTTTGAGAACAAGAG+AGG | - | chr4_1:58011080-58011099 | Msa0559000:intron | 35.0% |
| AGGAGGGTTCAAGAAATTAA+TGG | - | chr4_1:58011100-58011119 | Msa0559000:intron | 35.0% | |
| CCCAATGTAACAACCATAAA+AGG | - | chr4_1:58011158-58011177 | Msa0559000:intron | 35.0% | |
| !! | TTGGTAATTTTCCAGGGAAT+GGG | - | chr4_1:58011841-58011860 | Msa0559000:CDS | 35.0% |
| ! | TTGACTTGATGAACATCAAG+TGG | + | chr4_1:58011874-58011893 | None:intergenic | 35.0% |
| GTGTTCCTATCAAAGAACAC+TGG | - | chr4_1:58010519-58010538 | Msa0559000:CDS | 40.0% | |
| GTGGTTACATTTGTGACCAT+TGG | + | chr4_1:58010606-58010625 | None:intergenic | 40.0% | |
| GAAGATGAGTGAAGTTTAGG+TGG | + | chr4_1:58010625-58010644 | None:intergenic | 40.0% | |
| GATGAAAAAATGGGGGATAC+AGG | - | chr4_1:58010915-58010934 | Msa0559000:intron | 40.0% | |
| ! | TGGTTGCTTTCTATAGGAAG+AGG | - | chr4_1:58011016-58011035 | Msa0559000:intron | 40.0% |
| TCTATAGGAAGAGGTTCAAG+TGG | - | chr4_1:58011025-58011044 | Msa0559000:intron | 40.0% | |
| ! | ATCTTTGAGAACAAGAGAGG+AGG | - | chr4_1:58011083-58011102 | Msa0559000:intron | 40.0% |
| ! | TCTTTGAGAACAAGAGAGGA+GGG | - | chr4_1:58011084-58011103 | Msa0559000:intron | 40.0% |
| !!! | GTTGGTAATTTTCCAGGGAA+TGG | - | chr4_1:58011840-58011859 | Msa0559000:CDS | 40.0% |
| GTGTTCCTATCAAAGAACAC+TGG | - | chr4_1:58010519-58010538 | Msa0559000:CDS | 40.0% | |
| GTGGTTACATTTGTGACCAT+TGG | + | chr4_1:58010606-58010625 | None:intergenic | 40.0% | |
| GAAGATGAGTGAAGTTTAGG+TGG | + | chr4_1:58010625-58010644 | None:intergenic | 40.0% | |
| GATGAAAAAATGGGGGATAC+AGG | - | chr4_1:58010915-58010934 | Msa0559000:intron | 40.0% | |
| ! | TGGTTGCTTTCTATAGGAAG+AGG | - | chr4_1:58011016-58011035 | Msa0559000:intron | 40.0% |
| TCTATAGGAAGAGGTTCAAG+TGG | - | chr4_1:58011025-58011044 | Msa0559000:intron | 40.0% | |
| ! | ATCTTTGAGAACAAGAGAGG+AGG | - | chr4_1:58011083-58011102 | Msa0559000:intron | 40.0% |
| ! | TCTTTGAGAACAAGAGAGGA+GGG | - | chr4_1:58011084-58011103 | Msa0559000:intron | 40.0% |
| !!! | GTTGGTAATTTTCCAGGGAA+TGG | - | chr4_1:58011840-58011859 | Msa0559000:CDS | 40.0% |
| CTGACCCAGTGTTCTTTGAT+AGG | + | chr4_1:58010527-58010546 | None:intergenic | 45.0% | |
| ACACTGGGTCAGAAAGAAAG+AGG | - | chr4_1:58010535-58010554 | Msa0559000:CDS | 45.0% | |
| GGTCAGAAAGAAAGAGGAGA+CGG | - | chr4_1:58010541-58010560 | Msa0559000:CDS | 45.0% | |
| AGACCGAAGCATGAAGAGTT+TGG | + | chr4_1:58010577-58010596 | None:intergenic | 45.0% | |
| GCTTCGGTCTTTAGTACCAA+TGG | - | chr4_1:58010587-58010606 | Msa0559000:intron | 45.0% | |
| ! | GTAATTTTCCAGGGAATGGG+TGG | - | chr4_1:58011844-58011863 | Msa0559000:CDS | 45.0% |
| CTGACCCAGTGTTCTTTGAT+AGG | + | chr4_1:58010527-58010546 | None:intergenic | 45.0% | |
| ACACTGGGTCAGAAAGAAAG+AGG | - | chr4_1:58010535-58010554 | Msa0559000:CDS | 45.0% | |
| GGTCAGAAAGAAAGAGGAGA+CGG | - | chr4_1:58010541-58010560 | Msa0559000:CDS | 45.0% | |
| AGACCGAAGCATGAAGAGTT+TGG | + | chr4_1:58010577-58010596 | None:intergenic | 45.0% | |
| GCTTCGGTCTTTAGTACCAA+TGG | - | chr4_1:58010587-58010606 | Msa0559000:intron | 45.0% | |
| ! | GTAATTTTCCAGGGAATGGG+TGG | - | chr4_1:58011844-58011863 | Msa0559000:CDS | 45.0% |
| CACGCAAGAGCTTCAAGCAA+TGG | - | chr4_1:58010828-58010847 | Msa0559000:intron | 50.0% | |
| CACGCAAGAGCTTCAAGCAA+TGG | - | chr4_1:58010828-58010847 | Msa0559000:intron | 50.0% | |
| GTGGCTGACCACCCATTCCC+TGG | + | chr4_1:58011855-58011874 | None:intergenic | 65.0% | |
| GTGGCTGACCACCCATTCCC+TGG | + | chr4_1:58011855-58011874 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 58010504 | 58011927 | 58010504 | ID=Msa0559000;Name=Msa0559000 |
| chr4_1 | mRNA | 58010504 | 58011927 | 58010504 | ID=Msa0559000-mRNA-1;Parent=Msa0559000;Name=Msa0559000-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|0.66|0.75|4|0|180 |
| chr4_1 | exon | 58011814 | 58011927 | 58011814 | ID=Msa0559000-mRNA-1:exon:17686;Parent=Msa0559000-mRNA-1 |
| chr4_1 | exon | 58011495 | 58011674 | 58011495 | ID=Msa0559000-mRNA-1:exon:17685;Parent=Msa0559000-mRNA-1 |
| chr4_1 | exon | 58011223 | 58011399 | 58011223 | ID=Msa0559000-mRNA-1:exon:17684;Parent=Msa0559000-mRNA-1 |
| chr4_1 | exon | 58010504 | 58010575 | 58010504 | ID=Msa0559000-mRNA-1:exon:17683;Parent=Msa0559000-mRNA-1 |
| chr4_1 | CDS | 58011814 | 58011927 | 58011814 | ID=Msa0559000-mRNA-1:cds;Parent=Msa0559000-mRNA-1 |
| chr4_1 | CDS | 58011495 | 58011674 | 58011495 | ID=Msa0559000-mRNA-1:cds;Parent=Msa0559000-mRNA-1 |
| chr4_1 | CDS | 58011223 | 58011399 | 58011223 | ID=Msa0559000-mRNA-1:cds;Parent=Msa0559000-mRNA-1 |
| chr4_1 | CDS | 58010504 | 58010575 | 58010504 | ID=Msa0559000-mRNA-1:cds;Parent=Msa0559000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
