AlfalfaGEDB | Msa0559290

M. sativa cultivar zhongmu-4 / Msa0559290

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559290	XP_024637316.1	96.452	310	11	0	1	310	1	310	0.0	622

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559290	sp\|Q9T072\|BH025_ARATH	56.111	180	74	3	134	310	151	328	4.98e-55	184

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559290	A0A396ICU5	96.452	310	11	0	1	310	1	310	0.0	622

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TFs/TRs:

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Gene ID	Type	Classification
Msa0559290	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559290	MtrunA17_Chr4g0049331	96.452	310	11	0	1	310	1	310	0.0	622
Msa0559290	MtrunA17_Chr2g0280161	54.155	349	116	9	4	310	7	353	7.11e-113	330
Msa0559290	MtrunA17_Chr5g0400661	47.755	245	93	7	88	306	98	333	1.52e-58	191
Msa0559290	MtrunA17_Chr4g0054561	37.612	335	177	9	1	310	1	328	2.00e-55	182
Msa0559290	MtrunA17_Chr4g0054551	37.313	335	178	9	1	310	1	328	2.55e-53	177
Msa0559290	MtrunA17_Chr5g0400621	49.733	187	92	2	118	303	140	325	1.02e-51	173
Msa0559290	MtrunA17_Chr4g0054571	48.673	226	89	8	94	303	111	325	7.13e-46	158
Msa0559290	MtrunA17_Chr8g0336681	38.889	252	119	6	72	303	95	331	3.21e-45	156
Msa0559290	MtrunA17_Chr5g0400671	39.732	224	117	5	94	306	106	322	4.53e-45	155
Msa0559290	MtrunA17_Chr2g0333621	48.000	175	86	2	135	306	138	310	8.28e-44	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0559290	AT4G37850.2	56.111	180	74	3	134	310	151	328	5.07e-56	184
Msa0559290	AT4G37850.1	56.111	180	74	3	134	310	151	328	5.07e-56	184
Msa0559290	AT2G22760.1	48.864	176	86	2	132	303	116	291	2.61e-49	166
Msa0559290	AT2G22750.2	50.935	214	91	7	96	302	91	297	1.43e-45	157
Msa0559290	AT2G22750.3	50.935	214	91	7	96	302	119	325	2.01e-45	157
Msa0559290	AT2G22750.5	50.935	214	91	7	96	302	115	321	2.62e-45	157
Msa0559290	AT2G22750.1	50.935	214	90	8	96	302	91	296	5.08e-44	152
Msa0559290	AT2G22750.4	50.935	214	90	8	96	302	119	324	6.75e-44	153
Msa0559290	AT2G22770.1	44.920	187	88	2	132	303	129	315	8.09e-42	147
Msa0559290	AT2G22760.2	46.541	159	82	1	132	287	116	274	2.97e-41	145

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Find 55 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTCATGAAACTGCTAT+TGG	0.489746	4_1:+58493190	None:intergenic
AACGAAAGAAGATTCGGGTA+CGG	0.637416	4_1:+58494040	None:intergenic
AAGCCTAAGGATGAGATGAT+TGG	0.509779	4_1:-58493980	Msa0559290:CDS
AATAGCAGTTTCATGACATT+TGG	0.296146	4_1:-58493188	Msa0559290:CDS
AATTCTTCTGCAGAATCTGG+TGG	0.642920	4_1:-58493350	Msa0559290:CDS
ACTATATATCTTACCTGATC+AGG	0.398557	4_1:+58494349	None:intergenic
AGAATATTTCTTTCATTAGA+GGG	0.508921	4_1:-58494375	Msa0559290:CDS
AGAGAAGGTGAAGGTTCTTG+AGG	0.571434	4_1:-58493447	Msa0559290:CDS
AGGAACATTTGAGGCCAAAA+AGG	0.386903	4_1:-58493915	Msa0559290:CDS
AGTTTGGATAAACGTATGAA+TGG	0.568981	4_1:+58494116	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTATATATCTTACCTGATC+AGG	+	chr4_1:58492925-58492944	None:intergenic	30.0%
ACTATACATTCATACTTTGG+CGG	-	chr4_1:58492972-58492991	Msa0559290:intron	30.0%
AGTTTGGATAAACGTATGAA+TGG	+	chr4_1:58493158-58493177	None:intergenic	30.0%
ATATAGTAGCTGAAAGAAAG+CGG	-	chr4_1:58493415-58493434	Msa0559290:CDS	30.0%
TATCTATGTTGAACACATGT+TGG	-	chr4_1:58493635-58493654	Msa0559290:intron	30.0%
TTTACTATTAGTAGGACACA+CGG	-	chr4_1:58493669-58493688	Msa0559290:intron	30.0%
CAAAATCTTGCTTCAATTTC+TGG	+	chr4_1:58493966-58493985	None:intergenic	30.0%
GATTGAGTTTCTCAATTTCA+TGG	+	chr4_1:58494052-58494071	None:intergenic	30.0%
AAATGTCATGAAACTGCTAT+TGG	+	chr4_1:58494084-58494103	None:intergenic	30.0%
AATAGCAGTTTCATGACATT+TGG	-	chr4_1:58494083-58494102	Msa0559290:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	58492892	58494401	58492892	ID=Msa0559290;Name=Msa0559290
chr4_1	mRNA	58492892	58494401	58492892	ID=Msa0559290-mRNA-1;Parent=Msa0559290;Name=Msa0559290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|1\|1\|4\|0\|310
chr4_1	exon	58494363	58494401	58494363	ID=Msa0559290-mRNA-1:exon:17858;Parent=Msa0559290-mRNA-1
chr4_1	exon	58493796	58494245	58493796	ID=Msa0559290-mRNA-1:exon:17857;Parent=Msa0559290-mRNA-1
chr4_1	exon	58493154	58493522	58493154	ID=Msa0559290-mRNA-1:exon:17856;Parent=Msa0559290-mRNA-1
chr4_1	exon	58492892	58492966	58492892	ID=Msa0559290-mRNA-1:exon:17855;Parent=Msa0559290-mRNA-1
chr4_1	CDS	58494363	58494401	58494363	ID=Msa0559290-mRNA-1:cds;Parent=Msa0559290-mRNA-1
chr4_1	CDS	58493796	58494245	58493796	ID=Msa0559290-mRNA-1:cds;Parent=Msa0559290-mRNA-1
chr4_1	CDS	58493154	58493522	58493154	ID=Msa0559290-mRNA-1:cds;Parent=Msa0559290-mRNA-1
chr4_1	CDS	58492892	58492966	58492892	ID=Msa0559290-mRNA-1:cds;Parent=Msa0559290-mRNA-1

Gene Sequence

>Msa0559290

ATGGAGAATATTTCTTTCATTAGAGGGTTTCCTGATCAGGAAATGATGGAGGATCCTTCATTTCTTCATCATCAGTGGCATTTGAGCTCTATCAATGAGTCTAACTCACTGCCAATAGGTGCTGCTTTTGGAGACACTTCACAACACCATTCATACGTTTATCCAAACTTCAACCCTAGAACTTCAATGGAAACTGCTCAGACACTAGAGACTCAATTTGTTCCGTACCCGAATCTTCTTTCGTTTGTCGATTTGAATCAGTTAAATCAGTTGGGATTAGTAAAGCCTAAGGATGAGATGATTGGTTCTCAAAACAACAACACAACTTCTTCCGACATGATTTCTCAAGGAACATTTGAGGCCAAAAAGGTAGCAACACGTCCTAAGCTCTCTCTTCCTCAAGACCATATAGTAGCTGAAAGAAAGCGGCGTGAGAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCCCTTGTTCCCGGACTACAAAAGATGGACAAAGTTACTGTTCTTGGAGATGCTATCAAGTACTTGAAGAAATTGCAAGAGAAGGTGAAGGTTCTTGAGGAGGAACAGAACATGAAGAAAAACGTGGAATTTGTGGTGGTTGTGAAGAAATATCACTTATCCAATGATGTTGAAAATTCTTCTGCAGAATCTGGTGGTCCCTTTGACGAGGAACTGCCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCATAAGAGTTCACTGTGAGAAAATCAAAGGAGTTGTGGAAAAAACAATCCATGAAATTGAGAAACTCAATCTAAAAGTCACCAATAGCAGTTTCATGACATTTGGGAGTTGTGCACTTGATATAACAATTATTGCACAGATGGATATGGAATTTTGCATGACGGTGAAGGATCTTGTGAGAAACCTACGCTCAGTTTTTACGTCTTTCATCTAA

Protein sequence

>Msa0559290

MENISFIRGFPDQEMMEDPSFLHHQWHLSSINESNSLPIGAAFGDTSQHHSYVYPNFNPRTSMETAQTLETQFVPYPNLLSFVDLNQLNQLGLVKPKDEMIGSQNNNTTSSDMISQGTFEAKKVATRPKLSLPQDHIVAERKRREKLSQRFIALSALVPGLQKMDKVTVLGDAIKYLKKLQEKVKVLEEEQNMKKNVEFVVVVKKYHLSNDVENSSAESGGPFDEELPEIEARFCDRNVLIRVHCEKIKGVVEKTIHEIEKLNLKVTNSSFMTFGSCALDITIIAQMDMEFCMTVKDLVRNLRSVFTSFI*