AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0559580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559580 MtrunA17_Chr4g0049541 100.000 87 0 0 1 87 1 87 4.68e-59 181
Msa0559580 MtrunA17_Chr2g0279821 77.011 87 20 0 1 87 1 87 6.30e-43 140
Msa0559580 MtrunA17_Chr5g0411691 74.713 87 21 1 1 87 1 86 7.61e-40 133
Msa0559580 MtrunA17_Chr3g0077501 63.158 76 28 0 1 76 1 76 1.10e-29 106
Msa0559580 MtrunA17_Chr5g0427921 78.333 60 13 0 1 60 1 60 1.15e-29 101
Msa0559580 MtrunA17_Chr5g0427401 62.338 77 27 1 1 77 1 75 2.70e-29 105
Msa0559580 MtrunA17_Chr4g0020221 60.759 79 31 0 1 79 1 79 3.63e-29 106
Msa0559580 MtrunA17_Chr4g0049901 63.636 77 28 0 1 77 27 103 1.13e-28 104
Msa0559580 MtrunA17_Chr8g0380021 62.667 75 28 0 1 75 17 91 3.95e-28 103
Msa0559580 MtrunA17_Chr3g0097101 64.789 71 25 0 1 71 16 86 4.79e-28 102
Msa0559580 MtrunA17_Chr5g0412461 55.172 87 39 0 1 87 1 87 1.78e-27 100
Msa0559580 MtrunA17_Chr2g0284911 62.667 75 28 0 1 75 16 90 1.94e-27 101
Msa0559580 MtrunA17_Chr5g0412271 55.172 87 39 0 1 87 1 87 2.36e-27 100
Msa0559580 MtrunA17_Chr7g0246431 66.197 71 24 0 1 71 1 71 3.92e-27 99.8
Msa0559580 MtrunA17_Chr8g0351041 66.667 69 23 0 1 69 1 69 3.42e-26 95.9
Msa0559580 MtrunA17_Chr1g0164791 64.384 73 24 1 1 71 1 73 5.49e-26 97.4
Msa0559580 MtrunA17_Chr1g0173161 66.129 62 21 0 1 62 1 62 9.11e-26 92.8
Msa0559580 MtrunA17_Chr4g0057151 63.768 69 25 0 1 69 1 69 9.98e-26 95.9
Msa0559580 MtrunA17_Chr5g0420091 53.763 93 35 3 1 88 1 90 1.35e-25 95.9
Msa0559580 MtrunA17_Chr7g0220121 59.722 72 28 1 1 71 1 72 1.45e-25 96.7
Msa0559580 MtrunA17_Chr8g0351051 56.098 82 32 1 1 78 1 82 2.41e-25 96.3
Msa0559580 MtrunA17_Chr4g0018421 60.274 73 28 1 1 72 1 73 2.85e-25 94.7
Msa0559580 MtrunA17_Chr8g0351031 65.217 69 24 0 1 69 1 69 3.85e-25 95.1
Msa0559580 MtrunA17_Chr4g0061691 56.944 72 30 1 1 71 1 72 8.91e-25 94.4
Msa0559580 MtrunA17_Chr1g0204111 59.420 69 28 0 1 69 17 85 1.60e-24 94.0
Msa0559580 MtrunA17_Chr8g0366231 58.333 72 29 1 1 71 1 72 2.42e-24 93.2
Msa0559580 MtrunA17_Chr6g0455511 51.111 90 43 1 1 89 1 90 3.48e-24 93.2
Msa0559580 MtrunA17_Chr6g0474371 59.722 72 28 1 1 71 1 72 4.50e-24 91.3
Msa0559580 MtrunA17_Chr4g0061671 50.602 83 40 1 1 82 1 83 5.35e-24 90.9
Msa0559580 MtrunA17_Chr3g0122251 61.111 72 27 1 1 71 1 72 5.61e-24 92.4
Msa0559580 MtrunA17_Chr5g0420081 56.944 72 30 1 1 71 1 72 8.05e-24 91.7
Msa0559580 MtrunA17_Chr7g0220111 50.000 90 44 1 1 89 1 90 8.50e-24 92.0
Msa0559580 MtrunA17_Chr3g0125241 54.795 73 31 1 1 71 26 98 1.70e-23 90.1
Msa0559580 MtrunA17_Chr2g0308251 56.522 69 30 0 1 69 1 69 2.90e-23 86.3
Msa0559580 MtrunA17_Chr3g0142191 50.000 92 39 2 1 85 1 92 3.53e-23 90.1
Msa0559580 MtrunA17_Chr7g0246381 63.934 61 22 0 1 61 1 61 5.14e-23 85.1
Msa0559580 MtrunA17_Chr5g0404951 54.545 77 33 1 1 75 1 77 3.28e-22 87.4
Msa0559580 MtrunA17_Chr1g0159661 45.455 99 46 3 1 91 1 99 6.55e-22 85.5
Msa0559580 MtrunA17_Chr8g0377561 62.069 58 22 0 1 58 1 58 1.44e-21 82.4
Msa0559580 MtrunA17_Chr3g0134451 55.714 70 30 1 1 69 1 70 4.82e-20 83.2
Msa0559580 MtrunA17_Chr5g0425191 62.069 58 22 0 1 58 1 58 1.07e-18 75.1
Msa0559580 MtrunA17_Chr4g0044071 58.621 58 24 0 1 58 1 58 4.41e-18 73.9
Msa0559580 MtrunA17_Chr1g0166611 66.667 48 16 0 13 60 17 64 1.46e-17 73.2
Msa0559580 MtrunA17_Chr5g0419601 41.667 96 54 1 1 96 8 101 1.64e-17 75.1
Msa0559580 MtrunA17_Chr3g0099421 51.471 68 33 0 2 69 34 101 1.81e-17 75.5
Msa0559580 MtrunA17_Chr4g0052081 47.826 69 36 0 1 69 1 69 2.42e-17 73.6
Msa0559580 MtrunA17_Chr8g0357771 47.826 69 36 0 1 69 1 69 3.66e-17 73.2
Msa0559580 MtrunA17_Chr1g0175611 48.611 72 37 0 1 72 1 72 5.10e-17 72.8
Msa0559580 MtrunA17_Chr2g0317451 45.833 72 39 0 2 73 9 80 7.71e-17 73.6
Msa0559580 MtrunA17_Chr2g0317481 45.833 72 39 0 2 73 9 80 7.79e-17 73.6
Msa0559580 MtrunA17_Chr1g0208561 45.833 72 39 0 2 73 9 80 8.32e-17 73.2
Msa0559580 MtrunA17_Chr3g0089141 45.833 72 39 0 2 73 9 80 9.04e-17 73.2
Msa0559580 MtrunA17_Chr2g0292791 48.529 68 35 0 2 69 9 76 9.80e-17 73.2
Msa0559580 MtrunA17_Chr4g0052061 47.826 69 36 0 1 69 1 69 9.82e-17 71.6
Msa0559580 MtrunA17_Chr2g0325971 45.833 72 39 0 2 73 9 80 9.84e-17 73.2
Msa0559580 MtrunA17_Chr8g0355091 47.059 68 36 0 2 69 9 76 1.57e-16 72.8
Msa0559580 MtrunA17_Chr1g0206701 47.059 68 36 0 2 69 9 76 1.72e-16 72.4
Msa0559580 MtrunA17_Chr3g0099411 47.059 68 36 0 2 69 9 76 1.74e-16 72.4
Msa0559580 MtrunA17_Chr5g0422421 48.529 68 35 0 2 69 9 76 1.95e-16 72.4
Msa0559580 MtrunA17_Chr8g0376821 47.826 69 36 0 1 69 1 69 2.43e-16 71.2
Msa0559580 MtrunA17_Chr1g0206721 47.059 68 36 0 2 69 9 76 2.45e-16 72.0
Msa0559580 MtrunA17_Chr1g0180591 46.377 69 37 0 1 69 1 69 2.80e-16 70.9
Msa0559580 MtrunA17_Chr1g0188671 45.588 68 37 0 2 69 47 114 4.89e-16 72.0
Msa0559580 MtrunA17_Chr1g0187361 47.059 68 36 0 2 69 9 76 5.36e-16 71.2
Msa0559580 MtrunA17_Chr1g0206991 47.059 68 36 0 2 69 9 76 6.08e-16 70.1
Msa0559580 MtrunA17_Chr1g0169761 47.826 69 36 0 1 69 1 69 7.27e-16 69.7
Msa0559580 MtrunA17_Chr1g0149391 47.059 68 36 0 2 69 9 76 7.33e-16 70.9
Msa0559580 MtrunA17_Chr3g0119901 38.889 90 44 1 1 79 8 97 8.32e-16 70.1
Msa0559580 MtrunA17_Chr5g0422941 45.588 68 37 0 2 69 9 76 1.10e-15 70.5
Msa0559580 MtrunA17_Chr1g0208581 43.056 72 41 0 2 73 9 80 1.69e-15 69.7
Msa0559580 MtrunA17_Chr2g0333981 44.928 69 38 0 1 69 11 79 1.75e-15 68.9
Msa0559580 MtrunA17_Chr1g0175601 47.826 69 36 0 1 69 1 69 1.83e-15 68.9
Msa0559580 MtrunA17_Chr4g0074101 44.928 69 38 0 1 69 1 69 3.16e-15 68.6
Msa0559580 MtrunA17_Chr3g0085241 37.778 90 45 1 1 79 40 129 3.60e-15 69.3
Msa0559580 MtrunA17_Chr8g0379021 44.118 68 38 0 2 69 12 79 3.99e-15 67.8
Msa0559580 MtrunA17_Chr4g0060841 43.011 93 49 2 1 89 1 93 7.80e-15 69.3
Msa0559580 MtrunA17_Chr8g0356071 43.478 69 39 0 1 69 1 69 1.21e-14 66.2
Msa0559580 MtrunA17_Chr2g0300441 37.363 91 44 2 2 79 7 97 2.11e-14 67.0
Msa0559580 MtrunA17_Chr4g0018951 47.273 55 29 0 15 69 25 79 2.41e-14 65.5
Msa0559580 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 6.79e-14 63.5
Msa0559580 MtrunA17_Chr3g0089151 39.706 68 41 0 2 69 9 76 1.20e-13 63.2
Msa0559580 MtrunA17_Chr3g0111841 45.000 60 33 0 7 66 1 60 2.58e-13 60.5
Msa0559580 MtrunA17_Chr2g0300421 38.462 78 48 0 2 79 9 86 9.14e-13 61.6
Msa0559580 MtrunA17_Chr1g0187351 44.068 59 33 0 11 69 1 59 1.20e-12 58.9
Msa0559580 MtrunA17_Chr1g0206691 44.068 59 33 0 11 69 1 59 1.37e-12 62.0
Msa0559580 MtrunA17_Chr4g0071601 46.377 69 37 0 1 69 11 79 3.52e-12 60.1
Msa0559580 MtrunA17_Chr6g0457851 32.727 110 66 1 1 102 11 120 3.77e-12 61.6
Msa0559580 MtrunA17_Chr6g0449851 55.102 49 22 0 1 49 1 49 1.44e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559580 AT4G37940.3 69.474 95 28 1 1 94 1 95 8.48e-40 131
Msa0559580 AT2G14210.1 72.727 88 23 1 1 87 1 88 1.62e-39 132
Msa0559580 AT2G14210.2 72.727 88 23 1 1 87 1 88 1.79e-39 132
Msa0559580 AT4G37940.4 69.474 95 28 1 1 94 1 95 2.94e-39 131
Msa0559580 AT4G37940.1 69.474 95 28 1 1 94 1 95 3.12e-39 131
Msa0559580 AT3G57230.2 65.517 87 30 0 1 87 1 87 6.42e-36 120
Msa0559580 AT2G22630.1 65.517 87 30 0 1 87 1 87 7.85e-35 120
Msa0559580 AT2G22630.2 65.517 87 30 0 1 87 1 87 7.85e-35 120
Msa0559580 AT3G57230.1 65.517 87 30 0 1 87 1 87 1.80e-34 119
Msa0559580 AT3G57230.4 65.517 87 30 0 1 87 1 87 1.80e-34 119
Msa0559580 AT5G62165.14 64.474 76 27 0 1 76 1 76 2.84e-30 105
Msa0559580 AT5G62165.17 64.474 76 27 0 1 76 1 76 6.43e-30 105
Msa0559580 AT5G62165.12 64.474 76 27 0 1 76 1 76 6.43e-30 105
Msa0559580 AT5G62165.11 64.474 76 27 0 1 76 1 76 6.43e-30 105
Msa0559580 AT5G62165.6 55.435 92 40 1 1 91 1 92 1.19e-29 105
Msa0559580 AT5G62165.9 55.435 92 40 1 1 91 1 92 1.19e-29 105
Msa0559580 AT5G62165.7 55.435 92 40 1 1 91 1 92 1.19e-29 105
Msa0559580 AT5G62165.8 55.435 92 40 1 1 91 1 92 1.19e-29 105
Msa0559580 AT5G62165.13 55.435 92 40 1 1 91 1 92 1.19e-29 105
Msa0559580 AT2G22540.3 58.621 87 36 0 1 87 1 87 2.10e-29 106
Msa0559580 AT2G22540.1 58.621 87 36 0 1 87 1 87 2.10e-29 106
Msa0559580 AT5G62165.10 64.474 76 27 0 1 76 1 76 2.33e-29 105
Msa0559580 AT5G62165.4 64.474 76 27 0 1 76 1 76 2.33e-29 105
Msa0559580 AT5G62165.3 64.474 76 27 0 1 76 1 76 2.38e-29 105
Msa0559580 AT5G62165.1 64.474 76 27 0 1 76 1 76 2.38e-29 105
Msa0559580 AT5G62165.2 64.474 76 27 0 1 76 1 76 2.38e-29 105
Msa0559580 AT3G57390.3 68.116 69 22 0 1 69 1 69 5.62e-29 105
Msa0559580 AT4G09960.2 64.000 75 27 0 1 75 1 75 5.89e-29 105
Msa0559580 AT4G09960.1 64.000 75 27 0 1 75 1 75 7.30e-29 105
Msa0559580 AT4G09960.6 64.000 75 27 0 1 75 2 76 7.47e-29 105
Msa0559580 AT4G09960.5 64.000 75 27 0 1 75 11 85 1.02e-28 105
Msa0559580 AT3G57390.1 68.116 69 22 0 1 69 1 69 1.04e-28 105
Msa0559580 AT5G51870.2 57.647 85 36 0 1 85 1 85 1.81e-28 102
Msa0559580 AT4G09960.3 64.000 75 27 0 1 75 27 101 1.83e-28 104
Msa0559580 AT4G18960.1 62.667 75 28 0 2 76 18 92 2.99e-28 103
Msa0559580 AT2G42830.1 58.537 82 31 1 1 82 16 94 3.27e-28 103
Msa0559580 AT3G58780.1 58.537 82 31 1 1 82 16 94 3.30e-28 103
Msa0559580 AT2G42830.2 58.537 82 31 1 1 82 16 94 3.37e-28 103
Msa0559580 AT3G58780.5 58.537 82 31 1 1 82 22 100 3.90e-28 103
Msa0559580 AT5G51870.1 57.647 85 36 0 1 85 1 85 4.15e-28 102
Msa0559580 AT5G51870.5 57.647 85 36 0 1 85 24 108 4.43e-28 102
Msa0559580 AT4G09960.4 64.000 75 27 0 1 75 96 170 5.60e-28 104
Msa0559580 AT5G51870.4 57.647 85 36 0 1 85 1 85 5.85e-28 102
Msa0559580 AT5G51870.3 57.647 85 36 0 1 85 11 95 7.10e-28 102
Msa0559580 AT3G58780.4 58.537 82 31 1 1 82 16 94 7.79e-28 103
Msa0559580 AT2G45660.2 64.000 75 27 0 1 75 1 75 1.09e-27 100
Msa0559580 AT4G22950.2 49.495 99 47 1 1 96 1 99 3.68e-27 99.0
Msa0559580 AT2G45660.1 64.000 75 27 0 1 75 1 75 3.69e-27 100
Msa0559580 AT2G45650.1 63.380 71 26 0 1 71 1 71 7.51e-27 100
Msa0559580 AT5G13790.1 63.768 69 25 0 1 69 1 69 9.84e-27 100
Msa0559580 AT5G13790.2 63.768 69 25 0 1 69 1 69 1.01e-26 100
Msa0559580 AT4G22950.3 52.041 98 37 1 1 88 1 98 1.10e-26 99.4
Msa0559580 AT4G22950.1 52.041 98 37 1 1 88 1 98 1.10e-26 99.4
Msa0559580 AT4G24540.1 53.659 82 38 0 1 82 1 82 1.57e-26 99.0
Msa0559580 AT4G11880.2 54.945 91 37 2 1 87 1 91 1.33e-25 95.5
Msa0559580 AT4G11880.3 54.945 91 37 2 1 87 1 91 1.33e-25 95.5
Msa0559580 AT2G22540.2 56.322 87 33 1 1 87 1 82 1.87e-25 96.3
Msa0559580 AT4G11880.4 61.842 76 28 1 1 75 1 76 2.26e-25 95.9
Msa0559580 AT4G11880.1 61.842 76 28 1 1 75 1 76 2.26e-25 95.9
Msa0559580 AT5G51860.2 63.768 69 25 0 1 69 1 69 2.82e-25 95.1
Msa0559580 AT5G51860.1 63.768 69 25 0 1 69 1 69 3.84e-25 95.1
Msa0559580 AT5G23260.3 60.241 83 27 3 1 77 1 83 4.88e-25 95.5
Msa0559580 AT5G23260.2 60.241 83 27 3 1 77 1 83 6.22e-25 95.5
Msa0559580 AT5G23260.1 60.241 83 27 3 1 77 17 99 8.32e-25 95.5
Msa0559580 AT5G23260.4 60.241 83 27 3 1 77 17 99 9.59e-25 95.1
Msa0559580 AT1G26310.1 54.217 83 37 1 1 82 1 83 9.76e-25 95.1
Msa0559580 AT5G60910.1 58.333 72 29 1 1 71 1 72 1.13e-24 94.4
Msa0559580 AT3G30260.1 59.722 72 28 1 1 71 1 72 1.79e-24 94.0
Msa0559580 AT5G20240.2 58.108 74 29 1 1 72 1 74 3.40e-24 90.9
Msa0559580 AT1G24260.3 54.118 85 35 2 1 84 1 82 3.82e-24 93.2
Msa0559580 AT1G24260.2 54.118 85 35 2 1 84 1 82 4.45e-24 93.2
Msa0559580 AT1G24260.1 54.118 85 35 2 1 84 1 82 4.75e-24 93.2
Msa0559580 AT1G69120.2 50.602 83 40 1 1 82 1 83 5.63e-24 92.4
Msa0559580 AT5G20240.1 58.108 74 29 1 1 72 1 74 9.97e-24 91.3
Msa0559580 AT1G69120.1 50.602 83 40 1 1 82 1 83 1.10e-23 92.4
Msa0559580 AT3G02310.2 59.722 72 28 1 1 71 1 72 1.59e-23 90.5
Msa0559580 AT3G61120.1 59.420 69 28 0 1 69 1 69 1.74e-23 91.7
Msa0559580 AT3G58780.2 54.878 82 27 2 1 82 16 87 1.79e-23 91.3
Msa0559580 AT2G03710.3 50.588 85 37 2 1 83 1 82 2.36e-23 89.7
Msa0559580 AT5G15800.1 59.722 72 28 1 1 71 1 72 2.40e-23 91.3
Msa0559580 AT5G15800.2 59.722 72 28 1 1 71 1 72 3.21e-23 91.3
Msa0559580 AT3G58780.3 64.516 62 22 0 1 62 16 77 3.98e-23 91.3
Msa0559580 AT3G02310.1 59.722 72 28 1 1 71 1 72 4.22e-23 90.5
Msa0559580 AT2G03710.1 49.438 89 40 2 1 87 1 86 6.75e-23 90.1
Msa0559580 AT2G03710.2 49.438 89 40 2 1 87 1 86 7.14e-23 90.1
Msa0559580 AT5G10140.2 51.220 82 39 1 1 81 1 82 7.66e-23 87.8
Msa0559580 AT5G10140.4 51.220 82 39 1 1 81 1 82 9.59e-23 88.2
Msa0559580 AT5G10140.1 51.220 82 39 1 1 81 1 82 1.18e-22 88.2
Msa0559580 AT5G10140.3 51.220 82 39 1 1 81 1 82 1.21e-22 87.8
Msa0559580 AT1G71692.1 55.556 72 31 1 1 71 1 72 1.71e-22 88.2
Msa0559580 AT5G65060.2 52.439 82 38 1 1 81 1 82 2.64e-22 87.0
Msa0559580 AT5G65060.1 52.439 82 38 1 1 81 1 82 2.97e-22 87.0
Msa0559580 AT5G65060.3 52.439 82 38 1 1 81 1 82 3.26e-22 87.0
Msa0559580 AT5G65070.4 51.220 82 39 1 1 81 1 82 3.67e-22 85.5
Msa0559580 AT3G54340.1 56.338 71 29 1 1 69 1 71 5.47e-22 87.4
Msa0559580 AT5G65070.1 51.220 82 39 1 1 81 1 82 7.53e-22 86.3
Msa0559580 AT5G65050.2 50.000 92 40 3 1 90 1 88 2.85e-21 84.3
Msa0559580 AT5G65070.2 57.143 70 29 1 1 69 1 70 3.62e-21 85.1
Msa0559580 AT5G65070.5 57.143 70 29 1 1 69 1 70 3.79e-21 84.7
Msa0559580 AT5G65080.3 52.809 89 35 3 1 87 8 91 4.95e-21 84.0
Msa0559580 AT5G65050.5 50.000 82 40 1 1 81 1 82 5.39e-21 83.6
Msa0559580 AT5G65050.3 50.000 92 40 3 1 90 1 88 5.39e-21 84.0
Msa0559580 AT5G65050.1 50.000 92 40 3 1 90 1 88 5.61e-21 83.6
Msa0559580 AT1G31140.2 44.660 103 50 2 1 96 1 103 1.05e-20 83.6
Msa0559580 AT1G31140.1 54.795 73 31 1 1 71 1 73 1.80e-20 82.8
Msa0559580 AT5G65070.3 61.017 59 23 0 1 59 1 59 2.12e-19 80.5
Msa0559580 AT2G34440.1 45.333 75 41 0 1 75 1 75 1.53e-18 77.0
Msa0559580 AT1G77980.1 54.286 70 31 1 1 69 1 70 2.87e-18 79.0
Msa0559580 AT5G65080.2 61.017 59 23 0 1 59 8 66 4.00e-18 76.6
Msa0559580 AT1G22130.1 54.286 70 31 1 1 69 1 70 4.50e-18 78.6
Msa0559580 AT1G77080.11 43.925 107 50 2 1 97 1 107 7.14e-18 75.5
Msa0559580 AT1G77080.5 43.925 107 50 2 1 97 1 107 1.27e-17 74.7
Msa0559580 AT1G77080.4 43.925 107 50 2 1 97 1 107 1.71e-17 74.7
Msa0559580 AT2G24840.1 49.275 69 35 0 1 69 62 130 4.04e-17 75.1
Msa0559580 AT3G66656.1 44.928 69 38 0 1 69 1 69 4.86e-17 73.2
Msa0559580 AT1G77080.8 51.220 82 39 1 1 81 1 82 8.17e-17 73.6
Msa0559580 AT5G60440.1 38.614 101 55 2 2 99 7 103 1.09e-16 74.3
Msa0559580 AT1G72350.1 52.941 68 30 1 2 69 43 108 2.00e-16 72.4
Msa0559580 AT1G77950.3 48.571 70 35 1 1 69 1 70 3.69e-16 72.4
Msa0559580 AT1G77950.2 48.571 70 35 1 1 69 1 70 3.69e-16 72.4
Msa0559580 AT1G77950.1 48.571 70 35 1 1 69 1 70 3.69e-16 72.4
Msa0559580 AT1G77950.4 48.571 70 35 1 1 69 1 70 3.69e-16 72.4
Msa0559580 AT2G26320.1 45.070 71 37 1 1 69 17 87 2.07e-15 67.4
Msa0559580 AT1G77080.12 61.017 59 23 0 1 59 1 59 2.48e-15 68.2
Msa0559580 AT1G77080.2 61.017 59 23 0 1 59 1 59 4.67e-15 68.2
Msa0559580 AT1G18750.1 44.000 75 40 1 1 73 1 75 7.90e-15 69.7
Msa0559580 AT1G18750.4 44.000 75 40 1 1 73 1 75 7.96e-15 69.7
Msa0559580 AT4G36590.1 41.935 93 48 2 2 90 7 97 8.67e-15 68.6
Msa0559580 AT1G18750.3 44.000 75 40 1 1 73 1 75 9.03e-15 69.7
Msa0559580 AT2G03060.3 45.333 75 39 1 1 73 1 75 1.16e-14 69.3
Msa0559580 AT2G03060.7 45.333 75 39 1 1 73 1 75 1.16e-14 69.3
Msa0559580 AT2G03060.1 45.333 75 39 1 1 73 1 75 1.16e-14 69.3
Msa0559580 AT2G03060.2 45.333 75 39 1 1 73 1 75 1.28e-14 68.9
Msa0559580 AT1G69540.1 56.604 53 23 0 1 53 1 53 3.84e-14 67.8
Msa0559580 AT1G69540.2 56.604 53 23 0 1 53 1 53 4.85e-14 67.4
Msa0559580 AT3G04100.1 41.791 67 39 0 2 68 14 80 1.10e-13 65.1
Msa0559580 AT4G37435.1 45.714 70 37 1 1 69 1 70 2.23e-13 63.9
Msa0559580 AT1G28460.1 47.059 68 36 0 2 69 8 75 2.61e-13 63.5
Msa0559580 AT1G29962.1 45.588 68 37 0 2 69 8 75 3.60e-13 63.2
Msa0559580 AT1G01530.1 41.791 67 39 0 1 67 6 72 3.62e-13 64.3
Msa0559580 AT1G47760.1 42.647 68 39 0 1 68 1 68 6.31e-13 62.4
Msa0559580 AT1G65360.1 35.065 77 50 0 1 77 6 82 9.67e-13 62.8

Find 24 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTATCCATTTATTCATT+TGG 0.336536 4_1:+58772728 None:intergenic
TTTATGACTATGCAAGTTCC+AGG 0.390086 4_1:-58777013 Msa0559580:intron
ACTTTCTCAAAGAGAAGAAA+AGG 0.421236 4_1:-58777116 Msa0559580:CDS
CCATTTATTCATTTGGAAGT+AGG 0.423193 4_1:+58772735 None:intergenic
TCTTTGAGAAAGTCACTTGA+CGG 0.458185 4_1:+58777126 None:intergenic
ACCAATCAGCATTATTCGCT+TGG 0.466764 4_1:-58772807 Msa0559580:CDS
TCAAGCAATGGATCCTACTT+TGG 0.468684 4_1:-58773375 Msa0559580:CDS
AACTTGTGCATCACAAAGAA+TGG 0.480043 4_1:+58777067 None:intergenic
ATTCTTTGTGATGCACAAGT+TGG 0.486752 4_1:-58777065 Msa0559580:CDS
ACCAAGCGAATAATGCTGAT+TGG 0.496329 4_1:+58772806 None:intergenic
GAGGAAAGATTGTGATTCGA+AGG 0.502771 4_1:-58777166 Msa0559580:CDS
GGATCCTACTTTGGAACTCA+AGG 0.536262 4_1:-58773366 Msa0559580:intron
TCGGTAATTGCCAGAAAACA+CGG 0.549461 4_1:-58772847 Msa0559580:intron
TAGGATCCATTGCTTGATGA+TGG 0.549650 4_1:+58773381 None:intergenic
ATTACCTTGAGTTCCAAAGT+AGG 0.553115 4_1:+58773362 None:intergenic
GTCATAAAGCTTGTGAGTAG+AGG 0.558703 4_1:+58777028 None:intergenic
CTTTCTCAAAGAGAAGAAAA+GGG 0.568730 4_1:-58777115 Msa0559580:CDS
TAGTTAATTAAGATGGGGAG+AGG 0.586556 4_1:-58777185 None:intergenic
CGGTAATTGCCAGAAAACAC+GGG 0.599299 4_1:-58772846 Msa0559580:intron
AGAGGACCATCATCAAGCAA+TGG 0.621274 4_1:-58773387 Msa0559580:CDS
TGCCAGAAAACACGGGAGGG+TGG 0.625817 4_1:-58772839 Msa0559580:intron
GCGTTATAACAAGTTAGTAG+AGG 0.643614 4_1:-58773405 Msa0559580:CDS
AATTGCCAGAAAACACGGGA+GGG 0.657865 4_1:-58772842 Msa0559580:intron
TAATTGCCAGAAAACACGGG+AGG 0.688061 4_1:-58772843 Msa0559580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATTTATAAAAAAA+AGG + chr4_1:58775703-58775722 None:intergenic 0.0%
!!! AAAAAACTATTTATTTTTTG+AGG - chr4_1:58773258-58773277 Msa0559580:intron 10.0%
!!! AAAAACTATTTATTTTTTGA+GGG - chr4_1:58773259-58773278 Msa0559580:intron 10.0%
!! TGAACAAAAAATAAAAATAA+AGG - chr4_1:58774626-58774645 Msa0559580:intron 10.0%
!! CCTAAAAATAATTATTATAT+AGG + chr4_1:58775145-58775164 None:intergenic 10.0%
!!! CCTATATAATAATTATTTTT+AGG - chr4_1:58775142-58775161 Msa0559580:intron 10.0%
!!! TAATTATTTTACTAGTTTTT+TGG - chr4_1:58775489-58775508 Msa0559580:intron 10.0%
!! AAAAAAAAAAAATTGTGAGA+TGG - chr4_1:58773369-58773388 Msa0559580:CDS 15.0%
!!! TGTAAAAATCATTTTTGTAA+GGG + chr4_1:58773461-58773480 None:intergenic 15.0%
!!! ATGTAAAAATCATTTTTGTA+AGG + chr4_1:58773462-58773481 None:intergenic 15.0%
!! ATATGTATTTCAAAACTTAT+CGG - chr4_1:58774035-58774054 Msa0559580:intron 15.0%
!!! TTTTACATTGTTTTATTCTT+TGG + chr4_1:58774197-58774216 None:intergenic 15.0%
!! ATTATTATATAGGCAAAAAT+CGG + chr4_1:58775135-58775154 None:intergenic 15.0%
!! CTTATTTATGAGAATATTTA+AGG + chr4_1:58775178-58775197 None:intergenic 15.0%
!!! TCTTTAAAAAAACAATGTTA+TGG + chr4_1:58775553-58775572 None:intergenic 15.0%
!!! AAATTCCATAACTTTTTTTT+TGG - chr4_1:58775573-58775592 Msa0559580:intron 15.0%
!! AAAAGTTACATAATAAGTTA+TGG + chr4_1:58775628-58775647 None:intergenic 15.0%
!!! ATATTATGTAACTTTTTAAG+AGG - chr4_1:58775660-58775679 Msa0559580:intron 15.0%
!! TAAAAAAAAGGAAAAGAAAA+AGG + chr4_1:58775691-58775710 None:intergenic 15.0%
!! ATTCATGATGATATATATAA+GGG + chr4_1:58776249-58776268 None:intergenic 15.0%
!!! TATTCTATATTTGAAATACA+CGG + chr4_1:58776880-58776899 None:intergenic 15.0%
!!! AAAATTAGTTCTTATTGATC+AGG - chr4_1:58773027-58773046 Msa0559580:intron 20.0%
!!! AAATTAGTTCTTATTGATCA+GGG - chr4_1:58773028-58773047 Msa0559580:intron 20.0%
!! AAAAAAAATCGCAAAACAAA+TGG - chr4_1:58773580-58773599 Msa0559580:intron 20.0%
!! AAAAAAATCGCAAAACAAAT+GGG - chr4_1:58773581-58773600 Msa0559580:intron 20.0%
!! TGTGATTGTATAACTTAAAT+AGG + chr4_1:58773800-58773819 None:intergenic 20.0%
!! TTTAATACATAGATATTCCA+TGG + chr4_1:58773829-58773848 None:intergenic 20.0%
!!! AAGTTTAAAGTATTTCTAAC+TGG - chr4_1:58774309-58774328 Msa0559580:intron 20.0%
!! TTTACAATACTAGGTTATAT+GGG - chr4_1:58774376-58774395 Msa0559580:intron 20.0%
!! TCAAATGTGTATGTATTATA+TGG - chr4_1:58775341-58775360 Msa0559580:intron 20.0%
!!! CAATGTTATGGAATTTTTTT+AGG + chr4_1:58775541-58775560 None:intergenic 20.0%
!!! AATAAGTTATGGAATTTTCT+GGG + chr4_1:58775617-58775636 None:intergenic 20.0%
!!! TAATAAGTTATGGAATTTTC+TGG + chr4_1:58775618-58775637 None:intergenic 20.0%
!!! TTATGTAACTTTTTGTTTTG+AGG - chr4_1:58775635-58775654 Msa0559580:intron 20.0%
!! AAAGAAGTTACATTAAAAGA+TGG - chr4_1:58775759-58775778 Msa0559580:intron 20.0%
!! ATTTGTCTTACTATTTAGTT+GGG + chr4_1:58775896-58775915 None:intergenic 20.0%
!! TATTTGTCTTACTATTTAGT+TGG + chr4_1:58775897-58775916 None:intergenic 20.0%
!!! AAGACAAATAATGAAGTATT+TGG - chr4_1:58775907-58775926 Msa0559580:intron 20.0%
!! CATTCATGATGATATATATA+AGG + chr4_1:58776250-58776269 None:intergenic 20.0%
!!! CTAACCTTTTACAATTTTTT+TGG + chr4_1:58776276-58776295 None:intergenic 20.0%
!!! TGTATATATCCATAGATTTT+AGG - chr4_1:58776638-58776657 Msa0559580:intron 20.0%
!!! TTAATTTGTACAACTTGTAA+TGG - chr4_1:58776693-58776712 Msa0559580:intron 20.0%
! ACAAATCGCAGTAAAATAAA+GGG + chr4_1:58772960-58772979 None:intergenic 25.0%
! ATTGTACACAATATATATGC+AGG + chr4_1:58773060-58773079 None:intergenic 25.0%
! TCTAGTGTTTACTATACTTA+CGG - chr4_1:58773180-58773199 Msa0559580:intron 25.0%
!!! ACTATTTATTTTTTGACTCC+CGG - chr4_1:58773290-58773309 Msa0559580:intron 25.0%
! AATAAAGTGAACAATTGTGA+TGG - chr4_1:58773337-58773356 Msa0559580:intron 25.0%
! ATGGAGAGAAAATAAAATGT+TGG - chr4_1:58773388-58773407 Msa0559580:CDS 25.0%
! AAAAAATCGCAAAACAAATG+GGG - chr4_1:58773582-58773601 Msa0559580:intron 25.0%
! CATACACAATTACAAATTCT+CGG - chr4_1:58773645-58773664 Msa0559580:intron 25.0%
! CCTAACAATATTGATATTGT+CGG - chr4_1:58773694-58773713 Msa0559580:intron 25.0%
!!! GGTTTTTTGAGTATTTGAAT+GGG + chr4_1:58773875-58773894 None:intergenic 25.0%
!!! AGGTTTTTTGAGTATTTGAA+TGG + chr4_1:58773876-58773895 None:intergenic 25.0%
! AATTTGACTATTATTTGCTC+AGG - chr4_1:58774000-58774019 Msa0559580:intron 25.0%
!!! CAATATTTTTTTCTCTTCGT+TGG + chr4_1:58774097-58774116 None:intergenic 25.0%
! GAATACTGTAGAATATAACA+TGG - chr4_1:58774128-58774147 Msa0559580:intron 25.0%
! TTAAACTTTATCAGTTGTGT+GGG + chr4_1:58774297-58774316 None:intergenic 25.0%
! TTTAAACTTTATCAGTTGTG+TGG + chr4_1:58774298-58774317 None:intergenic 25.0%
!! TTTAAAGTATTTCTAACTGG+AGG - chr4_1:58774312-58774331 Msa0559580:intron 25.0%
! CATATAACCTAGTATTGTAA+AGG + chr4_1:58774377-58774396 None:intergenic 25.0%
! CTTTACAATACTAGGTTATA+TGG - chr4_1:58774375-58774394 Msa0559580:intron 25.0%
! TTGAACGAGATATTTATCTT+AGG - chr4_1:58774457-58774476 Msa0559580:intron 25.0%
! GAGATATTTATCTTAGGTAT+CGG - chr4_1:58774463-58774482 Msa0559580:intron 25.0%
! ACTTATGAACTAATAGCTAA+GGG + chr4_1:58774550-58774569 None:intergenic 25.0%
! TACTTATGAACTAATAGCTA+AGG + chr4_1:58774551-58774570 None:intergenic 25.0%
!!! GTGTTAAGTATTGTGTTTTT+GGG - chr4_1:58774580-58774599 Msa0559580:intron 25.0%
!!! TGTTAAGTATTGTGTTTTTG+GGG - chr4_1:58774581-58774600 Msa0559580:intron 25.0%
! TGCACAAGATAAGTATTTAT+AGG - chr4_1:58774715-58774734 Msa0559580:intron 25.0%
! AACTGTTCTTATGTATCAAA+TGG - chr4_1:58774741-58774760 Msa0559580:intron 25.0%
! ATTCTTTCTATAGTATACTG+AGG + chr4_1:58775027-58775046 None:intergenic 25.0%
! TTGCACCAAAAAAAAAGTTA+TGG + chr4_1:58775581-58775600 None:intergenic 25.0%
!!! TTTTTTTTTGGTGCAAAAGA+GGG - chr4_1:58775585-58775604 Msa0559580:intron 25.0%
!! TGTACTTCATCACATTTTAT+GGG + chr4_1:58775808-58775827 None:intergenic 25.0%
!! TTGTACTTCATCACATTTTA+TGG + chr4_1:58775809-58775828 None:intergenic 25.0%
!!! TTTTTGAGTATCTTTTGAGA+GGG + chr4_1:58775846-58775865 None:intergenic 25.0%
!!! TTTTTTGAGTATCTTTTGAG+AGG + chr4_1:58775847-58775866 None:intergenic 25.0%
! TTTGTCTTACTATTTAGTTG+GGG + chr4_1:58775895-58775914 None:intergenic 25.0%
! AGTAATCACTGAAATAATTC+AGG + chr4_1:58775937-58775956 None:intergenic 25.0%
! TGAAACAAATAGATGAGATT+TGG - chr4_1:58776187-58776206 Msa0559580:intron 25.0%
! GATGCCAAAAAAATTGTAAA+AGG - chr4_1:58776269-58776288 Msa0559580:intron 25.0%
! ATCTAAATTAACACTAGTAG+TGG + chr4_1:58776416-58776435 None:intergenic 25.0%
! AATGGTTATATTTGTATCAG+TGG + chr4_1:58776461-58776480 None:intergenic 25.0%
! ACATTATAGCCTAAAATCTA+TGG + chr4_1:58776650-58776669 None:intergenic 25.0%
!! TAGATTTTAGGCTATAATGT+TGG - chr4_1:58776650-58776669 Msa0559580:intron 25.0%
!! AGATTTTAGGCTATAATGTT+GGG - chr4_1:58776651-58776670 Msa0559580:intron 25.0%
! ATTTGAATAATAACGTATGC+AGG + chr4_1:58776819-58776838 None:intergenic 25.0%
! AAAAAACACAATGAACACTT+TGG - chr4_1:58776903-58776922 Msa0559580:intron 25.0%
ACTTTCTCAAAGAGAAGAAA+AGG - chr4_1:58772796-58772815 Msa0559580:CDS 30.0%
CTTTCTCAAAGAGAAGAAAA+GGG - chr4_1:58772797-58772816 Msa0559580:CDS 30.0%
AAATGATTTGATCCTATACC+TGG + chr4_1:58772920-58772939 None:intergenic 30.0%
CACAAATCGCAGTAAAATAA+AGG + chr4_1:58772961-58772980 None:intergenic 30.0%
CAGTCTAGTAAAACTTTGAA+GGG + chr4_1:58773112-58773131 None:intergenic 30.0%
!!! CTATTTATTTTTTGACTCCC+GGG - chr4_1:58773291-58773310 Msa0559580:intron 30.0%
AAAATCATTGAAGATTGTCC+CGG + chr4_1:58773312-58773331 None:intergenic 30.0%
CCGACAATATCAATATTGTT+AGG + chr4_1:58773697-58773716 None:intergenic 30.0%
! TTGATATTGTCGGTTGAATT+AGG - chr4_1:58773704-58773723 Msa0559580:intron 30.0%
ATACAATCACAATTTCTCCA+TGG - chr4_1:58773809-58773828 Msa0559580:intron 30.0%
TGAATGGGAGAGTTATAAAT+AGG + chr4_1:58773860-58773879 None:intergenic 30.0%
GAAGATGGAGATCAATATAT+AGG + chr4_1:58774355-58774374 None:intergenic 30.0%
GATAAATATCTCGTTCAACA+AGG + chr4_1:58774455-58774474 None:intergenic 30.0%
TAGTTCATAAGTACTTAGCA+TGG - chr4_1:58774558-58774577 Msa0559580:intron 30.0%
!! GGTGTTAAGTATTGTGTTTT+TGG - chr4_1:58774579-58774598 Msa0559580:intron 30.0%
TATCTTGTGCAATTTCAGAA+AGG + chr4_1:58774706-58774725 None:intergenic 30.0%
! ATAAATTTTCCCTCGTTGAA+GGG - chr4_1:58774814-58774833 Msa0559580:intron 30.0%
AGCGAAGGAAAAAATTATTG+GGG + chr4_1:58775277-58775296 None:intergenic 30.0%
GAGCGAAGGAAAAAATTATT+GGG + chr4_1:58775278-58775297 None:intergenic 30.0%
AGAGCGAAGGAAAAAATTAT+TGG + chr4_1:58775279-58775298 None:intergenic 30.0%
! ACATACACATTTGAGATCTA+TGG + chr4_1:58775335-58775354 None:intergenic 30.0%
!!! CTTTTTTTTTGGTGCAAAAG+AGG - chr4_1:58775584-58775603 Msa0559580:intron 30.0%
AAAACAATTAACACATAGCG+AGG + chr4_1:58775729-58775748 None:intergenic 30.0%
!! TTTTGAGTATCTTTTGAGAG+GGG + chr4_1:58775845-58775864 None:intergenic 30.0%
GAGTGAATTCAAATACTTTG+AGG - chr4_1:58776012-58776031 Msa0559580:intron 30.0%
! TGAATTCAAATACTTTGAGG+TGG - chr4_1:58776015-58776034 Msa0559580:intron 30.0%
TGAGGAAATGTAATGTTATG+AGG - chr4_1:58776074-58776093 Msa0559580:intron 30.0%
GAGGAAATGTAATGTTATGA+GGG - chr4_1:58776075-58776094 Msa0559580:intron 30.0%
TGTGTTTGAATGAGGTAATT+TGG + chr4_1:58776153-58776172 None:intergenic 30.0%
TGTACAACTTGTAATGGTTT+AGG - chr4_1:58776699-58776718 Msa0559580:intron 30.0%
TTTGAGCTTTCTTGAAAAGT+AGG + chr4_1:58776955-58776974 None:intergenic 30.0%
TCTACACTGTTAATAAGCTT+CGG + chr4_1:58777019-58777038 None:intergenic 30.0%
CAGTGTAGAATTGATATAGT+AGG - chr4_1:58777030-58777049 Msa0559580:CDS 30.0%
! TAGTAGGACTGCTTTAATTT+CGG - chr4_1:58777046-58777065 Msa0559580:CDS 30.0%
! TCTTTGAGAAAGTCACTTGA+CGG + chr4_1:58772789-58772808 None:intergenic 35.0%
AACTTGTGCATCACAAAGAA+TGG + chr4_1:58772848-58772867 None:intergenic 35.0%
ATTCTTTGTGATGCACAAGT+TGG - chr4_1:58772847-58772866 Msa0559580:intron 35.0%
TTTATGACTATGCAAGTTCC+AGG - chr4_1:58772899-58772918 Msa0559580:intron 35.0%
CGCAGTAAAATAAAGGGAAA+AGG + chr4_1:58772954-58772973 None:intergenic 35.0%
GCAGTCTAGTAAAACTTTGA+AGG + chr4_1:58773113-58773132 None:intergenic 35.0%
AAATCATTGAAGATTGTCCC+GGG + chr4_1:58773311-58773330 None:intergenic 35.0%
AGGTCTTAGAGTCAAATTGA+TGG - chr4_1:58773724-58773743 Msa0559580:intron 35.0%
GGTCTTAGAGTCAAATTGAT+GGG - chr4_1:58773725-58773744 Msa0559580:intron 35.0%
TGACTATTATTTGCTCAGGT+TGG - chr4_1:58774004-58774023 Msa0559580:intron 35.0%
GTATTTCAAAACTTATCGGC+TGG - chr4_1:58774039-58774058 Msa0559580:intron 35.0%
!! ATGCTTGCTATTAGGATTGT+TGG - chr4_1:58774065-58774084 Msa0559580:intron 35.0%
!! TGCTTGCTATTAGGATTGTT+GGG - chr4_1:58774066-58774085 Msa0559580:intron 35.0%
! TTTGAAGAGTATACATCCGA+TGG + chr4_1:58774256-58774275 None:intergenic 35.0%
CCTAGTATTGTAAAGGAAGA+TGG + chr4_1:58774370-58774389 None:intergenic 35.0%
CCATCTTCCTTTACAATACT+AGG - chr4_1:58774367-58774386 Msa0559580:intron 35.0%
! TTGGCTGAAATTGAAGCATT+TGG + chr4_1:58774409-58774428 None:intergenic 35.0%
! ATTGATATTCGTGTTGGTGT+TGG + chr4_1:58774428-58774447 None:intergenic 35.0%
AATATCTCGTTCAACAAGGT+CGG + chr4_1:58774451-58774470 None:intergenic 35.0%
ATCGTAGTCGTTTGAAGAAA+GGG + chr4_1:58774511-58774530 None:intergenic 35.0%
CCTTGATTGACTATTTGCAT+GGG - chr4_1:58774785-58774804 Msa0559580:intron 35.0%
! CATAAATTTTCCCTCGTTGA+AGG - chr4_1:58774813-58774832 Msa0559580:intron 35.0%
! TAAATTTTCCCTCGTTGAAG+GGG - chr4_1:58774815-58774834 Msa0559580:intron 35.0%
TACATATGTGGAGTACAAGT+TGG - chr4_1:58774944-58774963 Msa0559580:intron 35.0%
GAAGACATCAAACTTAGTCA+AGG + chr4_1:58774996-58775015 None:intergenic 35.0%
GCGAAGGAAAAAATTATTGG+GGG + chr4_1:58775276-58775295 None:intergenic 35.0%
TTTAACCCTTAGAGTGTGTT+TGG - chr4_1:58775956-58775975 Msa0559580:intron 35.0%
! TTGAGGTGGATTTCATTGTT+TGG - chr4_1:58776029-58776048 Msa0559580:intron 35.0%
TGGATTTCATTGTTTGGATG+AGG - chr4_1:58776035-58776054 Msa0559580:intron 35.0%
GGATTTCATTGTTTGGATGA+GGG - chr4_1:58776036-58776055 Msa0559580:intron 35.0%
GGGAATGTAATGTAATGTTG+AGG - chr4_1:58776056-58776075 Msa0559580:intron 35.0%
! CTTAAGAGTGTGTTTGAATG+AGG + chr4_1:58776161-58776180 None:intergenic 35.0%
CTCATTCAAACACACTCTTA+AGG - chr4_1:58776159-58776178 Msa0559580:intron 35.0%
GCGTTATAACAAGTTAGTAG+AGG - chr4_1:58776507-58776526 Msa0559580:intron 35.0%
ATTACCTTGAGTTCCAAAGT+AGG + chr4_1:58776553-58776572 None:intergenic 35.0%
ATAAATTTCACTTCCCCTCA+TGG + chr4_1:58776580-58776599 None:intergenic 35.0%
TGAATAATAACGTATGCAGG+TGG + chr4_1:58776816-58776835 None:intergenic 35.0%
TTTCAAGAAAGCTCAAAGAG+AGG - chr4_1:58776958-58776977 Msa0559580:intron 35.0%
CTACACTGTTAATAAGCTTC+GGG + chr4_1:58777018-58777037 None:intergenic 35.0%
!! AGCATTATTCGCTTGGTTTT+CGG - chr4_1:58777112-58777131 Msa0559580:CDS 35.0%
GAGGAAAGATTGTGATTCGA+AGG - chr4_1:58772746-58772765 Msa0559580:CDS 40.0%
GTCATAAAGCTTGTGAGTAG+AGG + chr4_1:58772887-58772906 None:intergenic 40.0%
ACTATGCAAGTTCCAGGTAT+AGG - chr4_1:58772905-58772924 Msa0559580:intron 40.0%
GTTAATACTTCGTCTAGCTG+AGG + chr4_1:58773616-58773635 None:intergenic 40.0%
TCGGATTCGAACTCTTATGA+AGG - chr4_1:58773664-58773683 Msa0559580:intron 40.0%
!! GCTTGCTATTAGGATTGTTG+GGG - chr4_1:58774067-58774086 Msa0559580:intron 40.0%
TCGTAGTCGTTTGAAGAAAG+GGG + chr4_1:58774510-58774529 None:intergenic 40.0%
CATCGTAGTCGTTTGAAGAA+AGG + chr4_1:58774512-58774531 None:intergenic 40.0%
GCCTTGATTGACTATTTGCA+TGG - chr4_1:58774784-58774803 Msa0559580:intron 40.0%
CCCATGCAAATAGTCAATCA+AGG + chr4_1:58774788-58774807 None:intergenic 40.0%
TCCCTTGAAACGTAAGTATG+TGG - chr4_1:58774895-58774914 Msa0559580:intron 40.0%
GCCACATACTTACGTTTCAA+GGG + chr4_1:58774899-58774918 None:intergenic 40.0%
TATGTGGCCATCATTCCTTT+CGG - chr4_1:58774911-58774930 Msa0559580:intron 40.0%
ATGTAATGCCACTAACCGAA+AGG + chr4_1:58774929-58774948 None:intergenic 40.0%
GGTTAGTGGCATTACATATG+TGG - chr4_1:58774932-58774951 Msa0559580:intron 40.0%
AGAATCGTTTGACCCTTGTT+TGG - chr4_1:58775042-58775061 Msa0559580:intron 40.0%
! GAATCGTTTGACCCTTGTTT+GGG - chr4_1:58775043-58775062 Msa0559580:intron 40.0%
TGACTTAAAACACAGAGCGA+AGG + chr4_1:58775292-58775311 None:intergenic 40.0%
CGAATTCGCAAAGAGAATCA+AGG + chr4_1:58775375-58775394 None:intergenic 40.0%
ACCACTTAACTTACACGCAT+TGG - chr4_1:58775405-58775424 Msa0559580:intron 40.0%
TCCAATGCGTGTAAGTTAAG+TGG + chr4_1:58775409-58775428 None:intergenic 40.0%
TGACTGCATGCTGCAAAAAA+TGG + chr4_1:58776479-58776498 None:intergenic 40.0%
TAGGATCCATTGCTTGATGA+TGG + chr4_1:58776534-58776553 None:intergenic 40.0%
TCAAGCAATGGATCCTACTT+TGG - chr4_1:58776537-58776556 Msa0559580:intron 40.0%
TCAAGGTAATACAGCCATGA+GGG - chr4_1:58776563-58776582 Msa0559580:intron 40.0%
TCGGTAATTGCCAGAAAACA+CGG - chr4_1:58777065-58777084 Msa0559580:CDS 40.0%
ACCAATCAGCATTATTCGCT+TGG - chr4_1:58777105-58777124 Msa0559580:CDS 40.0%
ACCAAGCGAATAATGCTGAT+TGG + chr4_1:58777109-58777128 None:intergenic 40.0%
!! GCATTATTCGCTTGGTTTTC+GGG - chr4_1:58777113-58777132 Msa0559580:CDS 40.0%
CTTGAGTACTCCACAACCAT+CGG - chr4_1:58774237-58774256 Msa0559580:intron 45.0%
GAGTATACATCCGATGGTTG+TGG + chr4_1:58774250-58774269 None:intergenic 45.0%
GGTCGGATTGATATTCGTGT+TGG + chr4_1:58774434-58774453 None:intergenic 45.0%
GGCCACATACTTACGTTTCA+AGG + chr4_1:58774900-58774919 None:intergenic 45.0%
CCACTAACCGAAAGGAATGA+TGG + chr4_1:58774921-58774940 None:intergenic 45.0%
CCATCATTCCTTTCGGTTAG+TGG - chr4_1:58774918-58774937 Msa0559580:intron 45.0%
! TGTAGAGCGCTCATCTAACT+TGG - chr4_1:58775066-58775085 Msa0559580:intron 45.0%
GCGCTCATCTAACTTGGTAT+CGG - chr4_1:58775072-58775091 Msa0559580:intron 45.0%
TGCAAGAGAGGAGTAGAATG+TGG + chr4_1:58775248-58775267 None:intergenic 45.0%
TTGGGGGAAATTTGCAAGAG+AGG + chr4_1:58775260-58775279 None:intergenic 45.0%
ACCCTTAGAGTGTGTTTGGA+TGG - chr4_1:58775960-58775979 Msa0559580:intron 45.0%
CCCATCCAAACACACTCTAA+GGG + chr4_1:58775964-58775983 None:intergenic 45.0%
CCCTTAGAGTGTGTTTGGAT+GGG - chr4_1:58775961-58775980 Msa0559580:intron 45.0%
CCTTAGAGTGTGTTTGGATG+GGG - chr4_1:58775962-58775981 Msa0559580:intron 45.0%
CTTAGAGTGTGTTTGGATGG+GGG - chr4_1:58775963-58775982 Msa0559580:intron 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - chr4_1:58775975-58775994 Msa0559580:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - chr4_1:58775976-58775995 Msa0559580:intron 45.0%
AGAGGACCATCATCAAGCAA+TGG - chr4_1:58776525-58776544 Msa0559580:intron 45.0%
!! GGATCCTACTTTGGAACTCA+AGG - chr4_1:58776546-58776565 Msa0559580:intron 45.0%
CTCAAGGTAATACAGCCATG+AGG - chr4_1:58776562-58776581 Msa0559580:intron 45.0%
CAAGGTAATACAGCCATGAG+GGG - chr4_1:58776564-58776583 Msa0559580:intron 45.0%
TGTTGGGTGTATGTTGTGCT+AGG - chr4_1:58776667-58776686 Msa0559580:intron 45.0%
CGGTAATTGCCAGAAAACAC+GGG - chr4_1:58777066-58777085 Msa0559580:CDS 45.0%
TAATTGCCAGAAAACACGGG+AGG - chr4_1:58777069-58777088 Msa0559580:CDS 45.0%
AATTGCCAGAAAACACGGGA+GGG - chr4_1:58777070-58777089 Msa0559580:CDS 45.0%
!!! TTTTTTTATTTTATATTTTG+AGG + chr4_1:58773896-58773915 None:intergenic 5.0%
!! GCTGGCTCATGCTTGCTATT+AGG - chr4_1:58774057-58774076 Msa0559580:intron 50.0%
TCAAGGGAAGTTGCGCACTT+TGG + chr4_1:58774883-58774902 None:intergenic 50.0%
AGCGCTCTACACCCAAACAA+GGG + chr4_1:58775057-58775076 None:intergenic 50.0%
CCCCATCCAAACACACTCTA+AGG + chr4_1:58775965-58775984 None:intergenic 50.0%
TAACGTATGCAGGTGGCTGT+AGG + chr4_1:58776809-58776828 None:intergenic 50.0%
ATGGATCACGCGGCAAACGT+GGG + chr4_1:58774851-58774870 None:intergenic 55.0%
AATGGATCACGCGGCAAACG+TGG + chr4_1:58774852-58774871 None:intergenic 55.0%
ACGTTTGCCGCGTGATCCAT+TGG - chr4_1:58774851-58774870 Msa0559580:intron 55.0%
GACTCTGCCAATGGATCACG+CGG + chr4_1:58774861-58774880 None:intergenic 55.0%
CGCACTTTGGACTCTGCCAA+TGG + chr4_1:58774870-58774889 None:intergenic 55.0%
GAGCGCTCTACACCCAAACA+AGG + chr4_1:58775058-58775077 None:intergenic 55.0%
GTATGCAGGTGGCTGTAGGA+AGG + chr4_1:58776805-58776824 None:intergenic 55.0%
TCCACGCACCCCTTCAACGA+GGG + chr4_1:58774826-58774845 None:intergenic 60.0%
TTCCACGCACCCCTTCAACG+AGG + chr4_1:58774827-58774846 None:intergenic 60.0%
TGGATCACGCGGCAAACGTG+GGG + chr4_1:58774850-58774869 None:intergenic 60.0%
TGCCAGAAAACACGGGAGGG+TGG - chr4_1:58777073-58777092 Msa0559580:CDS 60.0%
! CACCACCCTCCCGTGTTTTC+TGG + chr4_1:58777078-58777097 None:intergenic 60.0%
! TCCCTCGTTGAAGGGGTGCG+TGG - chr4_1:58774822-58774841 Msa0559580:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 58772739 58777195 58772739 ID=Msa0559580;Name=Msa0559580
chr4_1 mRNA 58772739 58777195 58772739 ID=Msa0559580-mRNA-1;Parent=Msa0559580;Name=Msa0559580-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|0.66|1|1|3|0|125
chr4_1 exon 58777014 58777195 58777014 ID=Msa0559580-mRNA-1:exon:17987;Parent=Msa0559580-mRNA-1
chr4_1 exon 58773367 58773445 58773367 ID=Msa0559580-mRNA-1:exon:17986;Parent=Msa0559580-mRNA-1
chr4_1 exon 58772739 58772855 58772739 ID=Msa0559580-mRNA-1:exon:17985;Parent=Msa0559580-mRNA-1
chr4_1 CDS 58777014 58777195 58777014 ID=Msa0559580-mRNA-1:cds;Parent=Msa0559580-mRNA-1
chr4_1 CDS 58773367 58773445 58773367 ID=Msa0559580-mRNA-1:cds;Parent=Msa0559580-mRNA-1
chr4_1 CDS 58772739 58772855 58772739 ID=Msa0559580-mRNA-1:cds;Parent=Msa0559580-mRNA-1
Gene Sequence

>Msa0559580

ATGGGGAGAGGAAAGATTGTGATTCGAAGGATTGAGAATTTGACAAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAAAGGGTTGATGAAGAAAGCTAAAGAACTATCCATTCTTTGTGATGCACAAGTTGGATTGATTTTGTTCTCCTCTACTCACAAGCTTTATGACTATGCAAGTTCCAGCATGCAGTCAGTGATCGAGCGTTATAACAAGTTAGTAGAGGACCATCATCAAGCAATGGATCCTACTTTGGAACTCAAGAAAACACGGGAGGGTGGTGTGAAACAACCAATCAGCATTATTCGCTTGGTTTTCGGGAATACATCTCTCGCGATGTATAGCATTTTTGAAGCTGAAAACCTACTTCCAAATGAATAA
Protein sequence

>Msa0559580

MGRGKIVIRRIENLTSRQVTFSKRRKGLMKKAKELSILCDAQVGLILFSSTHKLYDYASSSMQSVIERYNKLVEDHHQAMDPTLELKKTREGGVKQPISIIRLVFGNTSLAMYSIFEAENLLPNE*