Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560600 | XP_013457215.2 | 88.839 | 224 | 20 | 3 | 10 | 231 | 1 | 221 | 1.35e-107 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560600 | A0A396IAU5 | 88.839 | 224 | 20 | 3 | 10 | 231 | 1 | 221 | 6.47e-108 | 325 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0560600 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560600 | MtrunA17_Chr4g0050631 | 88.839 | 224 | 20 | 3 | 10 | 231 | 1 | 221 | 1.25e-111 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTCAATTCTCCGATTTA+TGG | 0.116513 | 4_1:+59880347 | Msa0560600:CDS |
| TCATCATCTTCTTCTTCTTC+TGG | 0.266781 | 4_1:+59880614 | Msa0560600:CDS |
| CCGTACTCCGGCAACAGTTC+AGG | 0.302302 | 4_1:+59880401 | Msa0560600:CDS |
| TATTGTGATGGATGATATTC+AGG | 0.326560 | 4_1:+59880553 | Msa0560600:CDS |
| CATTGAATTCATAATAGTTA+TGG | 0.365024 | 4_1:-59880760 | None:intergenic |
| CTGTTCTTTCCTCCTGACAT+TGG | 0.382703 | 4_1:-59880581 | None:intergenic |
| CTGGACTCATCGTTGTTGAT+TGG | 0.383003 | 4_1:-59880220 | None:intergenic |
| GCGGGAACAAACCTGGCATT+TGG | 0.389416 | 4_1:-59880738 | None:intergenic |
| GCCGAGAACTTCGACGTTAC+CGG | 0.389780 | 4_1:+59880260 | Msa0560600:CDS |
| TGAAGAAGGTTTCCAAGTTA+AGG | 0.391044 | 4_1:+59880132 | Msa0560600:CDS |
| GCTTTCTTCAATTGAGAACT+TGG | 0.392003 | 4_1:+59880469 | Msa0560600:CDS |
| TGCAGAGCATGGGAGGAATC+TGG | 0.420303 | 4_1:+59880698 | Msa0560600:CDS |
| CTCGTTCGAAGTCCTTAACT+TGG | 0.422674 | 4_1:-59880144 | None:intergenic |
| GCCGGTAACGTCGAAGTTCT+CGG | 0.438838 | 4_1:-59880261 | None:intergenic |
| GCGGCGTAGGGTTGAAAACC+TGG | 0.445857 | 4_1:-59880239 | None:intergenic |
| TACTTACTGGAGCCATAAAT+CGG | 0.446103 | 4_1:-59880359 | None:intergenic |
| AGAAGGAGGTTTGCAGAGCA+TGG | 0.460342 | 4_1:+59880687 | Msa0560600:CDS |
| CCTGAACTGTTGCCGGAGTA+CGG | 0.462019 | 4_1:-59880401 | None:intergenic |
| GAGTGTGTTGTTTAAGAAGG+AGG | 0.464562 | 4_1:+59880673 | Msa0560600:CDS |
| GAAGAGTGTGTTGTTTAAGA+AGG | 0.469448 | 4_1:+59880670 | Msa0560600:CDS |
| AGCGAGCTGCGACGGCGAGC+CGG | 0.471289 | 4_1:-59880279 | None:intergenic |
| TCACTGGATTTAGCAGAAAT+CGG | 0.480187 | 4_1:-59880323 | None:intergenic |
| TCGAAGTTCTCGGCGGCGTA+GGG | 0.488149 | 4_1:-59880251 | None:intergenic |
| CGGAGAATTGAATGAGTCAC+TGG | 0.498104 | 4_1:-59880339 | None:intergenic |
| CGTACTCCGGCAACAGTTCA+GGG | 0.510086 | 4_1:+59880402 | Msa0560600:CDS |
| GATGTATCAGACGCCGGTGA+AGG | 0.511807 | 4_1:+59880517 | Msa0560600:CDS |
| GTCGAAGTTCTCGGCGGCGT+AGG | 0.512563 | 4_1:-59880252 | None:intergenic |
| GAAGGAGGTTTGCAGAGCAT+GGG | 0.513507 | 4_1:+59880688 | Msa0560600:CDS |
| TCATCCAACTCGATCATCAA+TGG | 0.518876 | 4_1:-59880176 | None:intergenic |
| AGTTATGGCGGGAACAAACC+TGG | 0.522009 | 4_1:-59880745 | None:intergenic |
| ATTCAGGTGAGGCCAATGTC+AGG | 0.532076 | 4_1:+59880569 | Msa0560600:CDS |
| GGAGGTTTGCAGAGCATGGG+AGG | 0.543989 | 4_1:+59880691 | Msa0560600:CDS |
| AAGTATTTAGCGAGCTGCGA+CGG | 0.544538 | 4_1:-59880287 | None:intergenic |
| TTTATGGCTCCAGTAAGTAC+AGG | 0.546704 | 4_1:+59880363 | Msa0560600:CDS |
| GAATTCATAATAGTTATGGC+GGG | 0.548358 | 4_1:-59880756 | None:intergenic |
| CCGCTATGACTCCAAATGCC+AGG | 0.551499 | 4_1:+59880727 | Msa0560600:CDS |
| TTCGCCATTGATGATCGAGT+TGG | 0.551669 | 4_1:+59880172 | Msa0560600:CDS |
| TGAATTCATAATAGTTATGG+CGG | 0.565626 | 4_1:-59880757 | None:intergenic |
| CAATCAACAACGATGAGTCC+AGG | 0.566783 | 4_1:+59880221 | Msa0560600:CDS |
| GAACAACAGCAAGATGAAGA+AGG | 0.574444 | 4_1:+59880118 | Msa0560600:CDS |
| ACTCTTCGAAGACGAAGAAG+AGG | 0.574667 | 4_1:-59880654 | None:intergenic |
| ATGTATCAGACGCCGGTGAA+GGG | 0.578599 | 4_1:+59880518 | Msa0560600:CDS |
| TACTCCGGCAACAGTTCAGG+GGG | 0.579941 | 4_1:+59880404 | Msa0560600:CDS |
| CTTCAATTGAGAACTTGGAG+AGG | 0.582756 | 4_1:+59880474 | Msa0560600:CDS |
| AAGTTCTCAATTGAAGAAAG+CGG | 0.591154 | 4_1:-59880467 | None:intergenic |
| ACTTCCTCACCACCCTTCAC+CGG | 0.613181 | 4_1:-59880530 | None:intergenic |
| GACGCCGGTGAAGGGTGGTG+AGG | 0.621390 | 4_1:+59880526 | Msa0560600:CDS |
| TATCAGACGCCGGTGAAGGG+TGG | 0.632611 | 4_1:+59880521 | Msa0560600:CDS |
| TGGTGAGGAAGTTATTGTGA+TGG | 0.633081 | 4_1:+59880541 | Msa0560600:CDS |
| GTACTCCGGCAACAGTTCAG+GGG | 0.653779 | 4_1:+59880403 | Msa0560600:CDS |
| AGTAGTAGCTTCAGTTCTCG+CGG | 0.659393 | 4_1:+59880428 | Msa0560600:CDS |
| GCCGCGGATGTATCAGACGC+CGG | 0.668223 | 4_1:+59880511 | Msa0560600:CDS |
| CAGGTGAGGCCAATGTCAGG+AGG | 0.674041 | 4_1:+59880572 | Msa0560600:CDS |
| GGAAGCAGCTCTCGTCGCCG+CGG | 0.681014 | 4_1:+59880495 | Msa0560600:CDS |
| GAACTGTTGCCGGAGTACGG+TGG | 0.688179 | 4_1:-59880398 | None:intergenic |
| ACCGGCGTCTGATACATCCG+CGG | 0.697484 | 4_1:-59880512 | None:intergenic |
| CCTGGCATTTGGAGTCATAG+CGG | 0.709847 | 4_1:-59880727 | None:intergenic |
| ATCGAGTTGGATGATAACAG+AGG | 0.715067 | 4_1:+59880185 | Msa0560600:CDS |
| TGATGGATGATATTCAGGTG+AGG | 0.744981 | 4_1:+59880558 | Msa0560600:CDS |
| ACTCCGGCAACAGTTCAGGG+GGG | 0.773344 | 4_1:+59880405 | Msa0560600:CDS |
| GGTAACGTCGAAGTTCTCGG+CGG | 0.777146 | 4_1:-59880258 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTCATATTTATAGTTTG+CGG | - | chr4_1:59879696-59879715 | None:intergenic | 20.0% |
| !! | AATTGAAATCAAAATAGAGA+AGG | - | chr4_1:59879881-59879900 | None:intergenic | 20.0% |
| !! | CATTGAATTCATAATAGTTA+TGG | - | chr4_1:59880763-59880782 | None:intergenic | 20.0% |
| !! | AATCTCATATTTATAGTTTG+CGG | - | chr4_1:59879696-59879715 | None:intergenic | 20.0% |
| !! | AATTGAAATCAAAATAGAGA+AGG | - | chr4_1:59879881-59879900 | None:intergenic | 20.0% |
| !! | CATTGAATTCATAATAGTTA+TGG | - | chr4_1:59880763-59880782 | None:intergenic | 20.0% |
| ! | TACAAACAATAAGAGCTTAA+TGG | - | chr4_1:59879458-59879477 | None:intergenic | 25.0% |
| ! | AAAATAGAAACTACTACTAC+AGG | - | chr4_1:59879610-59879629 | None:intergenic | 25.0% |
| ! | CTCTTCAATCAATTGAAATT+AGG | + | chr4_1:59879936-59879955 | Msa0560600:intron | 25.0% |
| !! | ATTACGTGATTTTCATTTCT+TGG | - | chr4_1:59880038-59880057 | None:intergenic | 25.0% |
| ! | TGAATTCATAATAGTTATGG+CGG | - | chr4_1:59880760-59880779 | None:intergenic | 25.0% |
| !! | AATTCAATGATTCCTGTTTT+TGG | + | chr4_1:59880774-59880793 | Msa0560600:CDS | 25.0% |
| ! | TACAAACAATAAGAGCTTAA+TGG | - | chr4_1:59879458-59879477 | None:intergenic | 25.0% |
| ! | AAAATAGAAACTACTACTAC+AGG | - | chr4_1:59879610-59879629 | None:intergenic | 25.0% |
| ! | CTCTTCAATCAATTGAAATT+AGG | + | chr4_1:59879936-59879955 | Msa0560600:intron | 25.0% |
| !! | ATTACGTGATTTTCATTTCT+TGG | - | chr4_1:59880038-59880057 | None:intergenic | 25.0% |
| ! | TGAATTCATAATAGTTATGG+CGG | - | chr4_1:59880760-59880779 | None:intergenic | 25.0% |
| !! | AATTCAATGATTCCTGTTTT+TGG | + | chr4_1:59880774-59880793 | Msa0560600:CDS | 25.0% |
| CTTCATTCTTCAATGTTGTA+AGG | + | chr4_1:59879484-59879503 | Msa0560600:intron | 30.0% | |
| GCTTCAATGAAATACTAATG+CGG | + | chr4_1:59879630-59879649 | Msa0560600:intron | 30.0% | |
| AGAAATTACAAGCTCGAAAA+TGG | - | chr4_1:59879837-59879856 | None:intergenic | 30.0% | |
| AGAAGGTTGAAAATTGATAG+AGG | - | chr4_1:59879864-59879883 | None:intergenic | 30.0% | |
| ! | TCGTTATGATTTTCTTTTCC+TGG | + | chr4_1:59879901-59879920 | Msa0560600:intron | 30.0% |
| TCATTCAATTCTCCGATTTA+TGG | + | chr4_1:59880347-59880366 | Msa0560600:CDS | 30.0% | |
| AAGTTCTCAATTGAAGAAAG+CGG | - | chr4_1:59880470-59880489 | None:intergenic | 30.0% | |
| !! | TATTGTGATGGATGATATTC+AGG | + | chr4_1:59880553-59880572 | Msa0560600:CDS | 30.0% |
| GAATTCATAATAGTTATGGC+GGG | - | chr4_1:59880759-59880778 | None:intergenic | 30.0% | |
| CTTCATTCTTCAATGTTGTA+AGG | + | chr4_1:59879484-59879503 | Msa0560600:intron | 30.0% | |
| GCTTCAATGAAATACTAATG+CGG | + | chr4_1:59879630-59879649 | Msa0560600:intron | 30.0% | |
| AGAAATTACAAGCTCGAAAA+TGG | - | chr4_1:59879837-59879856 | None:intergenic | 30.0% | |
| AGAAGGTTGAAAATTGATAG+AGG | - | chr4_1:59879864-59879883 | None:intergenic | 30.0% | |
| ! | TCGTTATGATTTTCTTTTCC+TGG | + | chr4_1:59879901-59879920 | Msa0560600:intron | 30.0% |
| TCATTCAATTCTCCGATTTA+TGG | + | chr4_1:59880347-59880366 | Msa0560600:CDS | 30.0% | |
| AAGTTCTCAATTGAAGAAAG+CGG | - | chr4_1:59880470-59880489 | None:intergenic | 30.0% | |
| !! | TATTGTGATGGATGATATTC+AGG | + | chr4_1:59880553-59880572 | Msa0560600:CDS | 30.0% |
| GAATTCATAATAGTTATGGC+GGG | - | chr4_1:59880759-59880778 | None:intergenic | 30.0% | |
| CAGAATTATGAGACTGTTTG+TGG | - | chr4_1:59879553-59879572 | None:intergenic | 35.0% | |
| CAACTCTCACACTTCAAAAA+CGG | + | chr4_1:59879725-59879744 | Msa0560600:intron | 35.0% | |
| AATGGAGAATGAGAGAAAAG+AGG | - | chr4_1:59879766-59879785 | None:intergenic | 35.0% | |
| ! | GAAGAGAACGAAAATTTTCC+AGG | - | chr4_1:59879922-59879941 | None:intergenic | 35.0% |
| TGAAGAAGGTTTCCAAGTTA+AGG | + | chr4_1:59880132-59880151 | Msa0560600:CDS | 35.0% | |
| TCACTGGATTTAGCAGAAAT+CGG | - | chr4_1:59880326-59880345 | None:intergenic | 35.0% | |
| TACTTACTGGAGCCATAAAT+CGG | - | chr4_1:59880362-59880381 | None:intergenic | 35.0% | |
| ! | TTTTGCTAACCTGTACTTAC+TGG | - | chr4_1:59880375-59880394 | None:intergenic | 35.0% |
| GCTTTCTTCAATTGAGAACT+TGG | + | chr4_1:59880469-59880488 | Msa0560600:CDS | 35.0% | |
| TCATCATCTTCTTCTTCTTC+TGG | + | chr4_1:59880614-59880633 | Msa0560600:CDS | 35.0% | |
| !! | GAAGAGTGTGTTGTTTAAGA+AGG | + | chr4_1:59880670-59880689 | Msa0560600:CDS | 35.0% |
| TTGCATCAAAAGCCAAAAAC+AGG | - | chr4_1:59880789-59880808 | None:intergenic | 35.0% | |
| CAGAATTATGAGACTGTTTG+TGG | - | chr4_1:59879553-59879572 | None:intergenic | 35.0% | |
| CAACTCTCACACTTCAAAAA+CGG | + | chr4_1:59879725-59879744 | Msa0560600:intron | 35.0% | |
| AATGGAGAATGAGAGAAAAG+AGG | - | chr4_1:59879766-59879785 | None:intergenic | 35.0% | |
| ! | GAAGAGAACGAAAATTTTCC+AGG | - | chr4_1:59879922-59879941 | None:intergenic | 35.0% |
| TGAAGAAGGTTTCCAAGTTA+AGG | + | chr4_1:59880132-59880151 | Msa0560600:CDS | 35.0% | |
| TCACTGGATTTAGCAGAAAT+CGG | - | chr4_1:59880326-59880345 | None:intergenic | 35.0% | |
| TACTTACTGGAGCCATAAAT+CGG | - | chr4_1:59880362-59880381 | None:intergenic | 35.0% | |
| ! | TTTTGCTAACCTGTACTTAC+TGG | - | chr4_1:59880375-59880394 | None:intergenic | 35.0% |
| GCTTTCTTCAATTGAGAACT+TGG | + | chr4_1:59880469-59880488 | Msa0560600:CDS | 35.0% | |
| TCATCATCTTCTTCTTCTTC+TGG | + | chr4_1:59880614-59880633 | Msa0560600:CDS | 35.0% | |
| !! | GAAGAGTGTGTTGTTTAAGA+AGG | + | chr4_1:59880670-59880689 | Msa0560600:CDS | 35.0% |
| TTGCATCAAAAGCCAAAAAC+AGG | - | chr4_1:59880789-59880808 | None:intergenic | 35.0% | |
| ! | ATTGTTTGAGATTGCCACGT+TGG | - | chr4_1:59879512-59879531 | None:intergenic | 40.0% |
| GTTAGTGCAGAGAGAGAAAA+TGG | - | chr4_1:59879784-59879803 | None:intergenic | 40.0% | |
| AGCTCGAAAATGGAGATTCA+TGG | - | chr4_1:59879827-59879846 | None:intergenic | 40.0% | |
| ! | CGTTTTTGACATGCAGGAAT+TGG | + | chr4_1:59880088-59880107 | Msa0560600:intron | 40.0% |
| GAACAACAGCAAGATGAAGA+AGG | + | chr4_1:59880118-59880137 | Msa0560600:CDS | 40.0% | |
| TCATCCAACTCGATCATCAA+TGG | - | chr4_1:59880179-59880198 | None:intergenic | 40.0% | |
| !! | ATCGAGTTGGATGATAACAG+AGG | + | chr4_1:59880185-59880204 | Msa0560600:CDS | 40.0% |
| TTTATGGCTCCAGTAAGTAC+AGG | + | chr4_1:59880363-59880382 | Msa0560600:CDS | 40.0% | |
| CTTCAATTGAGAACTTGGAG+AGG | + | chr4_1:59880474-59880493 | Msa0560600:CDS | 40.0% | |
| TGGTGAGGAAGTTATTGTGA+TGG | + | chr4_1:59880541-59880560 | Msa0560600:CDS | 40.0% | |
| ! | TGATGGATGATATTCAGGTG+AGG | + | chr4_1:59880558-59880577 | Msa0560600:CDS | 40.0% |
| TCTTCTTCTTCTTCTGGTAG+AGG | + | chr4_1:59880620-59880639 | Msa0560600:CDS | 40.0% | |
| !! | GAGTGTGTTGTTTAAGAAGG+AGG | + | chr4_1:59880673-59880692 | Msa0560600:CDS | 40.0% |
| ! | ATTGTTTGAGATTGCCACGT+TGG | - | chr4_1:59879512-59879531 | None:intergenic | 40.0% |
| GTTAGTGCAGAGAGAGAAAA+TGG | - | chr4_1:59879784-59879803 | None:intergenic | 40.0% | |
| AGCTCGAAAATGGAGATTCA+TGG | - | chr4_1:59879827-59879846 | None:intergenic | 40.0% | |
| ! | CGTTTTTGACATGCAGGAAT+TGG | + | chr4_1:59880088-59880107 | Msa0560600:intron | 40.0% |
| GAACAACAGCAAGATGAAGA+AGG | + | chr4_1:59880118-59880137 | Msa0560600:CDS | 40.0% | |
| TCATCCAACTCGATCATCAA+TGG | - | chr4_1:59880179-59880198 | None:intergenic | 40.0% | |
| !! | ATCGAGTTGGATGATAACAG+AGG | + | chr4_1:59880185-59880204 | Msa0560600:CDS | 40.0% |
| TTTATGGCTCCAGTAAGTAC+AGG | + | chr4_1:59880363-59880382 | Msa0560600:CDS | 40.0% | |
| CTTCAATTGAGAACTTGGAG+AGG | + | chr4_1:59880474-59880493 | Msa0560600:CDS | 40.0% | |
| TGGTGAGGAAGTTATTGTGA+TGG | + | chr4_1:59880541-59880560 | Msa0560600:CDS | 40.0% | |
| ! | TGATGGATGATATTCAGGTG+AGG | + | chr4_1:59880558-59880577 | Msa0560600:CDS | 40.0% |
| TCTTCTTCTTCTTCTGGTAG+AGG | + | chr4_1:59880620-59880639 | Msa0560600:CDS | 40.0% | |
| !! | GAGTGTGTTGTTTAAGAAGG+AGG | + | chr4_1:59880673-59880692 | Msa0560600:CDS | 40.0% |
| ! | AATGTTGTAAGGTGCCAACG+TGG | + | chr4_1:59879495-59879514 | Msa0560600:intron | 45.0% |
| TATGAGACTGTTTGTGGCAG+TGG | - | chr4_1:59879547-59879566 | None:intergenic | 45.0% | |
| TAGTGACGCAGGTTTAAAGG+CGG | - | chr4_1:59879666-59879685 | None:intergenic | 45.0% | |
| CGATAGTGACGCAGGTTTAA+AGG | - | chr4_1:59879669-59879688 | None:intergenic | 45.0% | |
| AACCCTACCACACGATGAAA+CGG | + | chr4_1:59879801-59879820 | Msa0560600:intron | 45.0% | |
| ACGAAGCTCGAATCACGATT+CGG | - | chr4_1:59880071-59880090 | None:intergenic | 45.0% | |
| !! | GAGCTTCGTTTTTGACATGC+AGG | + | chr4_1:59880082-59880101 | Msa0560600:intron | 45.0% |
| CTCGTTCGAAGTCCTTAACT+TGG | - | chr4_1:59880147-59880166 | None:intergenic | 45.0% | |
| ! | TTCGCCATTGATGATCGAGT+TGG | + | chr4_1:59880172-59880191 | Msa0560600:CDS | 45.0% |
| CTGGACTCATCGTTGTTGAT+TGG | - | chr4_1:59880223-59880242 | None:intergenic | 45.0% | |
| CAATCAACAACGATGAGTCC+AGG | + | chr4_1:59880221-59880240 | Msa0560600:CDS | 45.0% | |
| AAGTATTTAGCGAGCTGCGA+CGG | - | chr4_1:59880290-59880309 | None:intergenic | 45.0% | |
| CGGAGAATTGAATGAGTCAC+TGG | - | chr4_1:59880342-59880361 | None:intergenic | 45.0% | |
| AGTAGTAGCTTCAGTTCTCG+CGG | + | chr4_1:59880428-59880447 | Msa0560600:CDS | 45.0% | |
| CTGTTCTTTCCTCCTGACAT+TGG | - | chr4_1:59880584-59880603 | None:intergenic | 45.0% | |
| ACTCTTCGAAGACGAAGAAG+AGG | - | chr4_1:59880657-59880676 | None:intergenic | 45.0% | |
| ! | AATGTTGTAAGGTGCCAACG+TGG | + | chr4_1:59879495-59879514 | Msa0560600:intron | 45.0% |
| TATGAGACTGTTTGTGGCAG+TGG | - | chr4_1:59879547-59879566 | None:intergenic | 45.0% | |
| TAGTGACGCAGGTTTAAAGG+CGG | - | chr4_1:59879666-59879685 | None:intergenic | 45.0% | |
| CGATAGTGACGCAGGTTTAA+AGG | - | chr4_1:59879669-59879688 | None:intergenic | 45.0% | |
| AACCCTACCACACGATGAAA+CGG | + | chr4_1:59879801-59879820 | Msa0560600:intron | 45.0% | |
| ACGAAGCTCGAATCACGATT+CGG | - | chr4_1:59880071-59880090 | None:intergenic | 45.0% | |
| !! | GAGCTTCGTTTTTGACATGC+AGG | + | chr4_1:59880082-59880101 | Msa0560600:intron | 45.0% |
| CTCGTTCGAAGTCCTTAACT+TGG | - | chr4_1:59880147-59880166 | None:intergenic | 45.0% | |
| ! | TTCGCCATTGATGATCGAGT+TGG | + | chr4_1:59880172-59880191 | Msa0560600:CDS | 45.0% |
| CTGGACTCATCGTTGTTGAT+TGG | - | chr4_1:59880223-59880242 | None:intergenic | 45.0% | |
| CAATCAACAACGATGAGTCC+AGG | + | chr4_1:59880221-59880240 | Msa0560600:CDS | 45.0% | |
| AAGTATTTAGCGAGCTGCGA+CGG | - | chr4_1:59880290-59880309 | None:intergenic | 45.0% | |
| CGGAGAATTGAATGAGTCAC+TGG | - | chr4_1:59880342-59880361 | None:intergenic | 45.0% | |
| AGTAGTAGCTTCAGTTCTCG+CGG | + | chr4_1:59880428-59880447 | Msa0560600:CDS | 45.0% | |
| CTGTTCTTTCCTCCTGACAT+TGG | - | chr4_1:59880584-59880603 | None:intergenic | 45.0% | |
| ACTCTTCGAAGACGAAGAAG+AGG | - | chr4_1:59880657-59880676 | None:intergenic | 45.0% | |
| CGCAGGTTTAAAGGCGGTTT+AGG | - | chr4_1:59879660-59879679 | None:intergenic | 50.0% | |
| TTCATGGCCGTTTCATCGTG+TGG | - | chr4_1:59879811-59879830 | None:intergenic | 50.0% | |
| ATGTATCAGACGCCGGTGAA+GGG | + | chr4_1:59880518-59880537 | Msa0560600:CDS | 50.0% | |
| ATTCAGGTGAGGCCAATGTC+AGG | + | chr4_1:59880569-59880588 | Msa0560600:CDS | 50.0% | |
| AGAAGGAGGTTTGCAGAGCA+TGG | + | chr4_1:59880687-59880706 | Msa0560600:CDS | 50.0% | |
| GAAGGAGGTTTGCAGAGCAT+GGG | + | chr4_1:59880688-59880707 | Msa0560600:CDS | 50.0% | |
| ! | CCTGGCATTTGGAGTCATAG+CGG | - | chr4_1:59880730-59880749 | None:intergenic | 50.0% |
| ! | AGTTATGGCGGGAACAAACC+TGG | - | chr4_1:59880748-59880767 | None:intergenic | 50.0% |
| CGCAGGTTTAAAGGCGGTTT+AGG | - | chr4_1:59879660-59879679 | None:intergenic | 50.0% | |
| TTCATGGCCGTTTCATCGTG+TGG | - | chr4_1:59879811-59879830 | None:intergenic | 50.0% | |
| ATGTATCAGACGCCGGTGAA+GGG | + | chr4_1:59880518-59880537 | Msa0560600:CDS | 50.0% | |
| ATTCAGGTGAGGCCAATGTC+AGG | + | chr4_1:59880569-59880588 | Msa0560600:CDS | 50.0% | |
| AGAAGGAGGTTTGCAGAGCA+TGG | + | chr4_1:59880687-59880706 | Msa0560600:CDS | 50.0% | |
| GAAGGAGGTTTGCAGAGCAT+GGG | + | chr4_1:59880688-59880707 | Msa0560600:CDS | 50.0% | |
| ! | CCTGGCATTTGGAGTCATAG+CGG | - | chr4_1:59880730-59880749 | None:intergenic | 50.0% |
| ! | AGTTATGGCGGGAACAAACC+TGG | - | chr4_1:59880748-59880767 | None:intergenic | 50.0% |
| GGCCGTTTCATCGTGTGGTA+GGG | - | chr4_1:59879806-59879825 | None:intergenic | 55.0% | |
| TGGCCGTTTCATCGTGTGGT+AGG | - | chr4_1:59879807-59879826 | None:intergenic | 55.0% | |
| GGTAACGTCGAAGTTCTCGG+CGG | - | chr4_1:59880261-59880280 | None:intergenic | 55.0% | |
| GCCGAGAACTTCGACGTTAC+CGG | + | chr4_1:59880260-59880279 | Msa0560600:CDS | 55.0% | |
| GCCGGTAACGTCGAAGTTCT+CGG | - | chr4_1:59880264-59880283 | None:intergenic | 55.0% | |
| GCAAAAACGCCACCGTACTC+CGG | + | chr4_1:59880389-59880408 | Msa0560600:CDS | 55.0% | |
| CCTGAACTGTTGCCGGAGTA+CGG | - | chr4_1:59880404-59880423 | None:intergenic | 55.0% | |
| CGTACTCCGGCAACAGTTCA+GGG | + | chr4_1:59880402-59880421 | Msa0560600:CDS | 55.0% | |
| GTACTCCGGCAACAGTTCAG+GGG | + | chr4_1:59880403-59880422 | Msa0560600:CDS | 55.0% | |
| TACTCCGGCAACAGTTCAGG+GGG | + | chr4_1:59880404-59880423 | Msa0560600:CDS | 55.0% | |
| GATGTATCAGACGCCGGTGA+AGG | + | chr4_1:59880517-59880536 | Msa0560600:CDS | 55.0% | |
| ACTTCCTCACCACCCTTCAC+CGG | - | chr4_1:59880533-59880552 | None:intergenic | 55.0% | |
| TGCAGAGCATGGGAGGAATC+TGG | + | chr4_1:59880698-59880717 | Msa0560600:CDS | 55.0% | |
| CCGCTATGACTCCAAATGCC+AGG | + | chr4_1:59880727-59880746 | Msa0560600:CDS | 55.0% | |
| GCGGGAACAAACCTGGCATT+TGG | - | chr4_1:59880741-59880760 | None:intergenic | 55.0% | |
| GGCCGTTTCATCGTGTGGTA+GGG | - | chr4_1:59879806-59879825 | None:intergenic | 55.0% | |
| TGGCCGTTTCATCGTGTGGT+AGG | - | chr4_1:59879807-59879826 | None:intergenic | 55.0% | |
| GGTAACGTCGAAGTTCTCGG+CGG | - | chr4_1:59880261-59880280 | None:intergenic | 55.0% | |
| GCCGAGAACTTCGACGTTAC+CGG | + | chr4_1:59880260-59880279 | Msa0560600:CDS | 55.0% | |
| GCCGGTAACGTCGAAGTTCT+CGG | - | chr4_1:59880264-59880283 | None:intergenic | 55.0% | |
| GCAAAAACGCCACCGTACTC+CGG | + | chr4_1:59880389-59880408 | Msa0560600:CDS | 55.0% | |
| CCTGAACTGTTGCCGGAGTA+CGG | - | chr4_1:59880404-59880423 | None:intergenic | 55.0% | |
| CGTACTCCGGCAACAGTTCA+GGG | + | chr4_1:59880402-59880421 | Msa0560600:CDS | 55.0% | |
| GTACTCCGGCAACAGTTCAG+GGG | + | chr4_1:59880403-59880422 | Msa0560600:CDS | 55.0% | |
| TACTCCGGCAACAGTTCAGG+GGG | + | chr4_1:59880404-59880423 | Msa0560600:CDS | 55.0% | |
| GATGTATCAGACGCCGGTGA+AGG | + | chr4_1:59880517-59880536 | Msa0560600:CDS | 55.0% | |
| ACTTCCTCACCACCCTTCAC+CGG | - | chr4_1:59880533-59880552 | None:intergenic | 55.0% | |
| TGCAGAGCATGGGAGGAATC+TGG | + | chr4_1:59880698-59880717 | Msa0560600:CDS | 55.0% | |
| CCGCTATGACTCCAAATGCC+AGG | + | chr4_1:59880727-59880746 | Msa0560600:CDS | 55.0% | |
| GCGGGAACAAACCTGGCATT+TGG | - | chr4_1:59880741-59880760 | None:intergenic | 55.0% | |
| GCGGAACACGATAGTGACGC+AGG | - | chr4_1:59879677-59879696 | None:intergenic | 60.0% | |
| GCGGCGTAGGGTTGAAAACC+TGG | - | chr4_1:59880242-59880261 | None:intergenic | 60.0% | |
| TCGAAGTTCTCGGCGGCGTA+GGG | - | chr4_1:59880254-59880273 | None:intergenic | 60.0% | |
| GAACTGTTGCCGGAGTACGG+TGG | - | chr4_1:59880401-59880420 | None:intergenic | 60.0% | |
| CCGTACTCCGGCAACAGTTC+AGG | + | chr4_1:59880401-59880420 | Msa0560600:CDS | 60.0% | |
| ACTCCGGCAACAGTTCAGGG+GGG | + | chr4_1:59880405-59880424 | Msa0560600:CDS | 60.0% | |
| ACTCCCCCCTGAACTGTTGC+CGG | - | chr4_1:59880411-59880430 | None:intergenic | 60.0% | |
| ACCGGCGTCTGATACATCCG+CGG | - | chr4_1:59880515-59880534 | None:intergenic | 60.0% | |
| TATCAGACGCCGGTGAAGGG+TGG | + | chr4_1:59880521-59880540 | Msa0560600:CDS | 60.0% | |
| CAGGTGAGGCCAATGTCAGG+AGG | + | chr4_1:59880572-59880591 | Msa0560600:CDS | 60.0% | |
| GGAGGTTTGCAGAGCATGGG+AGG | + | chr4_1:59880691-59880710 | Msa0560600:CDS | 60.0% | |
| GCGGAACACGATAGTGACGC+AGG | - | chr4_1:59879677-59879696 | None:intergenic | 60.0% | |
| GCGGCGTAGGGTTGAAAACC+TGG | - | chr4_1:59880242-59880261 | None:intergenic | 60.0% | |
| TCGAAGTTCTCGGCGGCGTA+GGG | - | chr4_1:59880254-59880273 | None:intergenic | 60.0% | |
| GAACTGTTGCCGGAGTACGG+TGG | - | chr4_1:59880401-59880420 | None:intergenic | 60.0% | |
| CCGTACTCCGGCAACAGTTC+AGG | + | chr4_1:59880401-59880420 | Msa0560600:CDS | 60.0% | |
| ACTCCGGCAACAGTTCAGGG+GGG | + | chr4_1:59880405-59880424 | Msa0560600:CDS | 60.0% | |
| ACTCCCCCCTGAACTGTTGC+CGG | - | chr4_1:59880411-59880430 | None:intergenic | 60.0% | |
| ACCGGCGTCTGATACATCCG+CGG | - | chr4_1:59880515-59880534 | None:intergenic | 60.0% | |
| TATCAGACGCCGGTGAAGGG+TGG | + | chr4_1:59880521-59880540 | Msa0560600:CDS | 60.0% | |
| CAGGTGAGGCCAATGTCAGG+AGG | + | chr4_1:59880572-59880591 | Msa0560600:CDS | 60.0% | |
| GGAGGTTTGCAGAGCATGGG+AGG | + | chr4_1:59880691-59880710 | Msa0560600:CDS | 60.0% | |
| GTCGAAGTTCTCGGCGGCGT+AGG | - | chr4_1:59880255-59880274 | None:intergenic | 65.0% | |
| GCCGCGGATGTATCAGACGC+CGG | + | chr4_1:59880511-59880530 | Msa0560600:CDS | 65.0% | |
| GTCGAAGTTCTCGGCGGCGT+AGG | - | chr4_1:59880255-59880274 | None:intergenic | 65.0% | |
| GCCGCGGATGTATCAGACGC+CGG | + | chr4_1:59880511-59880530 | Msa0560600:CDS | 65.0% | |
| GGAAGCAGCTCTCGTCGCCG+CGG | + | chr4_1:59880495-59880514 | Msa0560600:CDS | 70.0% | |
| GACGCCGGTGAAGGGTGGTG+AGG | + | chr4_1:59880526-59880545 | Msa0560600:CDS | 70.0% | |
| GGAAGCAGCTCTCGTCGCCG+CGG | + | chr4_1:59880495-59880514 | Msa0560600:CDS | 70.0% | |
| GACGCCGGTGAAGGGTGGTG+AGG | + | chr4_1:59880526-59880545 | Msa0560600:CDS | 70.0% | |
| AGCGAGCTGCGACGGCGAGC+CGG | - | chr4_1:59880282-59880301 | None:intergenic | 75.0% | |
| AGCGAGCTGCGACGGCGAGC+CGG | - | chr4_1:59880282-59880301 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 59879404 | 59880811 | 59879404 | ID=Msa0560600;Name=Msa0560600 |
| chr4_1 | mRNA | 59879404 | 59880811 | 59879404 | ID=Msa0560600-mRNA-1;Parent=Msa0560600;Name=Msa0560600-mRNA-1;_AED=0.43;_eAED=0.44;_QI=0|0|0|1|0|0|3|0|240 |
| chr4_1 | exon | 59879404 | 59879410 | 59879404 | ID=Msa0560600-mRNA-1:exon:18598;Parent=Msa0560600-mRNA-1 |
| chr4_1 | exon | 59879506 | 59879513 | 59879506 | ID=Msa0560600-mRNA-1:exon:18599;Parent=Msa0560600-mRNA-1 |
| chr4_1 | exon | 59880104 | 59880811 | 59880104 | ID=Msa0560600-mRNA-1:exon:18600;Parent=Msa0560600-mRNA-1 |
| chr4_1 | CDS | 59879404 | 59879410 | 59879404 | ID=Msa0560600-mRNA-1:cds;Parent=Msa0560600-mRNA-1 |
| chr4_1 | CDS | 59879506 | 59879513 | 59879506 | ID=Msa0560600-mRNA-1:cds;Parent=Msa0560600-mRNA-1 |
| chr4_1 | CDS | 59880104 | 59880811 | 59880104 | ID=Msa0560600-mRNA-1:cds;Parent=Msa0560600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
