Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561500 | XP_013457345.1 | 94.891 | 137 | 7 | 0 | 39 | 175 | 16 | 152 | 2.17e-89 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561500 | sp|O64702|HMG14_ARATH | 60.465 | 129 | 50 | 1 | 48 | 175 | 23 | 151 | 1.22e-47 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561500 | I3SF63 | 94.891 | 137 | 7 | 0 | 39 | 175 | 16 | 152 | 1.04e-89 | 268 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0561500 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561500 | MtrunA17_Chr4g0052011 | 94.891 | 137 | 7 | 0 | 39 | 175 | 16 | 152 | 2.00e-93 | 268 |
| Msa0561500 | MtrunA17_Chr8g0370431 | 46.067 | 89 | 48 | 0 | 83 | 171 | 33 | 121 | 2.43e-23 | 90.1 |
| Msa0561500 | MtrunA17_Chr3g0143991 | 47.674 | 86 | 45 | 0 | 77 | 162 | 35 | 120 | 5.86e-23 | 89.4 |
| Msa0561500 | MtrunA17_Chr7g0242251 | 51.316 | 76 | 37 | 0 | 83 | 158 | 47 | 122 | 6.61e-22 | 87.0 |
| Msa0561500 | MtrunA17_Chr1g0212341 | 48.315 | 89 | 45 | 1 | 83 | 170 | 98 | 186 | 3.74e-21 | 85.9 |
| Msa0561500 | MtrunA17_Chr5g0407011 | 38.272 | 81 | 50 | 0 | 76 | 156 | 25 | 105 | 6.64e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561500 | AT2G34450.4 | 60.465 | 129 | 50 | 1 | 48 | 175 | 23 | 151 | 1.24e-48 | 155 |
| Msa0561500 | AT2G34450.3 | 60.465 | 129 | 50 | 1 | 48 | 175 | 23 | 151 | 1.24e-48 | 155 |
| Msa0561500 | AT2G34450.1 | 60.465 | 129 | 50 | 1 | 48 | 175 | 23 | 151 | 1.24e-48 | 155 |
| Msa0561500 | AT2G34450.2 | 60.000 | 130 | 50 | 2 | 48 | 175 | 23 | 152 | 8.27e-47 | 150 |
| Msa0561500 | AT3G51880.4 | 44.554 | 101 | 56 | 0 | 74 | 174 | 40 | 140 | 5.21e-23 | 90.1 |
| Msa0561500 | AT2G17560.3 | 46.535 | 101 | 50 | 1 | 79 | 175 | 27 | 127 | 5.71e-23 | 89.0 |
| Msa0561500 | AT3G51880.5 | 44.118 | 102 | 57 | 0 | 74 | 175 | 40 | 141 | 6.57e-23 | 90.1 |
| Msa0561500 | AT3G51880.1 | 44.118 | 102 | 57 | 0 | 74 | 175 | 40 | 141 | 6.57e-23 | 90.1 |
| Msa0561500 | AT3G51880.3 | 44.118 | 102 | 57 | 0 | 74 | 175 | 40 | 141 | 6.57e-23 | 90.1 |
| Msa0561500 | AT3G51880.2 | 44.118 | 102 | 57 | 0 | 74 | 175 | 40 | 141 | 6.60e-23 | 90.5 |
| Msa0561500 | AT2G17560.2 | 46.535 | 101 | 50 | 1 | 79 | 175 | 27 | 127 | 6.84e-23 | 89.0 |
| Msa0561500 | AT2G17560.1 | 46.535 | 101 | 50 | 1 | 79 | 175 | 27 | 127 | 6.84e-23 | 89.0 |
| Msa0561500 | AT1G20693.3 | 46.667 | 90 | 46 | 1 | 83 | 172 | 34 | 121 | 2.22e-21 | 85.1 |
| Msa0561500 | AT1G20693.1 | 46.667 | 90 | 46 | 1 | 83 | 172 | 34 | 121 | 2.27e-21 | 85.1 |
| Msa0561500 | AT4G35570.1 | 43.333 | 90 | 51 | 0 | 83 | 172 | 30 | 119 | 3.86e-21 | 84.0 |
| Msa0561500 | AT4G35570.2 | 43.333 | 90 | 51 | 0 | 83 | 172 | 30 | 119 | 3.86e-21 | 84.0 |
| Msa0561500 | AT1G20693.2 | 46.667 | 90 | 46 | 1 | 83 | 172 | 34 | 121 | 4.29e-21 | 84.3 |
| Msa0561500 | AT1G20696.1 | 45.556 | 90 | 47 | 1 | 83 | 172 | 31 | 118 | 3.34e-20 | 82.0 |
| Msa0561500 | AT1G20696.5 | 44.156 | 77 | 43 | 0 | 83 | 159 | 31 | 107 | 1.25e-17 | 75.1 |
| Msa0561500 | AT1G20696.2 | 44.156 | 77 | 43 | 0 | 83 | 159 | 31 | 107 | 1.49e-17 | 75.5 |
| Msa0561500 | AT5G23420.1 | 48.485 | 66 | 33 | 1 | 86 | 151 | 114 | 178 | 1.72e-12 | 63.9 |
| Msa0561500 | AT1G20696.4 | 43.243 | 74 | 40 | 1 | 99 | 172 | 5 | 76 | 8.18e-12 | 59.3 |
| Msa0561500 | AT1G20696.3 | 43.243 | 74 | 40 | 1 | 99 | 172 | 5 | 76 | 1.80e-11 | 58.2 |
Find 40 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGCCACCCTTGTTGTTAA+AGG | 0.206436 | 4_1:-61017160 | None:intergenic |
| GATGCTTAAAATTGCAGTTT+TGG | 0.234894 | 4_1:+61020824 | Msa0561500:three_prime_UTR |
| CTGATTCCAAGTTTGGTAAA+AGG | 0.256016 | 4_1:-61020881 | None:intergenic |
| AGTTGTATATATATGCTTAA+TGG | 0.266062 | 4_1:-61017026 | None:intergenic |
| GAAGACCCTGATTCCAAGTT+TGG | 0.294181 | 4_1:-61020888 | None:intergenic |
| AATGAGGCTGATTTCAAAAC+TGG | 0.309626 | 4_1:+61017192 | Msa0561500:CDS |
| GGTTTATTGAGGAATATCTT+TGG | 0.347041 | 4_1:+61017102 | Msa0561500:CDS |
| GACAGAGTATAACAAGAAAA+TGG | 0.358050 | 4_1:+61020496 | Msa0561500:CDS |
| ACAACTGAATATACAACTTA+AGG | 0.407822 | 4_1:-61020723 | None:intergenic |
| TATTCAGTTGTAGTCAGCTC+TGG | 0.411578 | 4_1:+61020735 | Msa0561500:three_prime_UTR |
| TCACGCATTGACTTAACATC+TGG | 0.420177 | 4_1:-61019123 | None:intergenic |
| TATTAAGTAAACTGAATAGA+AGG | 0.421794 | 4_1:+61020854 | Msa0561500:three_prime_UTR |
| TCTATTATTATAAGATAAGA+TGG | 0.457896 | 4_1:+61017077 | Msa0561500:exon |
| TTATTATAAGATAAGATGGC+TGG | 0.493761 | 4_1:+61017081 | Msa0561500:exon |
| ATAAGATGGCTGGTTTATTG+AGG | 0.498673 | 4_1:+61017091 | Msa0561500:exon |
| CGAGTAGTTTCAATTAACAT+AGG | 0.500098 | 4_1:-61020696 | None:intergenic |
| TTGAACGACGGTGGAAACAA+TGG | 0.559588 | 4_1:+61017126 | Msa0561500:CDS |
| ATCTTTGGTTTGAACGACGG+TGG | 0.565216 | 4_1:+61017117 | Msa0561500:CDS |
| GCAAGGCATGTGGAGAGAAG+TGG | 0.571530 | 4_1:+61019420 | Msa0561500:CDS |
| CGTGTTCATACAGATTGGCA+AGG | 0.572075 | 4_1:+61019403 | Msa0561500:intron |
| AAGAAGTAGAAGAAAGCAGT+GGG | 0.576065 | 4_1:-61018423 | None:intergenic |
| CTGGAGCAAAAGTTACCAAA+GGG | 0.577200 | 4_1:+61017211 | Msa0561500:CDS |
| GTTGGCGATCAAATCGAATG+AGG | 0.587280 | 4_1:+61018299 | Msa0561500:CDS |
| GAAGTAGAAGAAAGCAGTGG+GGG | 0.593069 | 4_1:-61018421 | None:intergenic |
| TCTGATGCTTTGCAGGAAAG+CGG | 0.595152 | 4_1:+61020591 | Msa0561500:intron |
| AATATCTTTGGTTTGAACGA+CGG | 0.596826 | 4_1:+61017114 | Msa0561500:CDS |
| ATACAGATTGGCAAGGCATG+TGG | 0.602187 | 4_1:+61019410 | Msa0561500:intron |
| CGAATATGAAGAAACTGATG+AGG | 0.603289 | 4_1:+61020614 | Msa0561500:CDS |
| AATTGATGCCTTTAACAACA+AGG | 0.607339 | 4_1:+61017152 | Msa0561500:CDS |
| ACTGGAGCAAAAGTTACCAA+AGG | 0.623647 | 4_1:+61017210 | Msa0561500:CDS |
| TTGGCGATCAAATCGAATGA+GGG | 0.633911 | 4_1:+61018300 | Msa0561500:CDS |
| CAAGAAGTAGAAGAAAGCAG+TGG | 0.644048 | 4_1:-61018424 | None:intergenic |
| ATTGATGCCTTTAACAACAA+GGG | 0.648530 | 4_1:+61017153 | Msa0561500:CDS |
| GATGCCTTTAACAACAAGGG+TGG | 0.656967 | 4_1:+61017156 | Msa0561500:CDS |
| ATGTTAATTGAAACTACTCG+AGG | 0.664773 | 4_1:+61020699 | Msa0561500:three_prime_UTR |
| AGTATGACGAGTAAAACTAT+CGG | 0.664820 | 4_1:+61020643 | Msa0561500:exon |
| AAGTAGAAGAAAGCAGTGGG+GGG | 0.691336 | 4_1:-61018420 | None:intergenic |
| AGGGAATGAAGAGATCGTTG+CGG | 0.720017 | 4_1:+61018319 | Msa0561500:CDS |
| AGAAGTAGAAGAAAGCAGTG+GGG | 0.730489 | 4_1:-61018422 | None:intergenic |
| TGGCGAACAAGATTTCAATG+AGG | 0.743433 | 4_1:+61017176 | Msa0561500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAAGTAAAAAAAATTAT+TGG | + | chr4_1:61018037-61018056 | Msa0561500:intron | 10.0% |
| !! | ATAAATTAAGTTTCAAAAAT+TGG | + | chr4_1:61019552-61019571 | Msa0561500:intron | 10.0% |
| !! | ATAAATTATGTTTCAAAAAT+TGG | + | chr4_1:61019627-61019646 | Msa0561500:intron | 10.0% |
| !! | TTGTTATATTTGAAAAAAAT+TGG | + | chr4_1:61019782-61019801 | Msa0561500:intron | 10.0% |
| !! | AATAAAATAAATTAACGAAA+AGG | + | chr4_1:61020138-61020157 | Msa0561500:intron | 10.0% |
| !! | ATAAAATAAATTAACGAAAA+GGG | + | chr4_1:61020139-61020158 | Msa0561500:intron | 10.0% |
| !! | TCTATTATTATAAGATAAGA+TGG | + | chr4_1:61017077-61017096 | Msa0561500:exon | 15.0% |
| !!! | AATTGATTTTTAGAAGATTT+AGG | + | chr4_1:61018008-61018027 | Msa0561500:intron | 15.0% |
| !!! | ATTGATTTTTAGAAGATTTA+GGG | + | chr4_1:61018009-61018028 | Msa0561500:intron | 15.0% |
| !!! | TAATTTTTTTTACTTGAATG+AGG | - | chr4_1:61018036-61018055 | None:intergenic | 15.0% |
| !!! | CGATTTTTATGTTTAATTAT+TGG | + | chr4_1:61019986-61020005 | Msa0561500:intron | 15.0% |
| !! | TAAAATAAATTAACGAAAAG+GGG | + | chr4_1:61020140-61020159 | Msa0561500:intron | 15.0% |
| !! | ATCAAATTGAACATAATATA+TGG | - | chr4_1:61020355-61020374 | None:intergenic | 15.0% |
| !! | AAAAATGATAATTATTCACA+AGG | - | chr4_1:61020766-61020785 | None:intergenic | 15.0% |
| !! | AGTTGTATATATATGCTTAA+TGG | - | chr4_1:61017029-61017048 | None:intergenic | 20.0% |
| !!! | TGCTAAGAATTATTTTCATA+AGG | - | chr4_1:61017356-61017375 | None:intergenic | 20.0% |
| !! | TATGAAAATAATTCTTAGCA+AGG | + | chr4_1:61017356-61017375 | Msa0561500:intron | 20.0% |
| !! | AATAAGCAGAAAACAATTTA+TGG | - | chr4_1:61017900-61017919 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCATAAGCTCTT+CGG | + | chr4_1:61017981-61018000 | Msa0561500:intron | 20.0% |
| !!! | CCATCATTTTATTCAATTTT+GGG | - | chr4_1:61018129-61018148 | None:intergenic | 20.0% |
| !! | AAAATTGAATAAAATGATGG+CGG | + | chr4_1:61018129-61018148 | Msa0561500:intron | 20.0% |
| !! | AACATCATAAATAAAGAACA+AGG | - | chr4_1:61018469-61018488 | None:intergenic | 20.0% |
| !!! | AATTTAGAACAAATGGAAAA+TGG | - | chr4_1:61018531-61018550 | None:intergenic | 20.0% |
| !!! | CCATAAAAATTTAGAACAAA+TGG | - | chr4_1:61018538-61018557 | None:intergenic | 20.0% |
| !!! | CCATTTGTTCTAAATTTTTA+TGG | + | chr4_1:61018535-61018554 | Msa0561500:intron | 20.0% |
| !! | ACTACTATTTACAGTATATT+TGG | + | chr4_1:61018943-61018962 | Msa0561500:intron | 20.0% |
| !!! | ACAATTGCTTCTTTTTTATA+TGG | + | chr4_1:61019007-61019026 | Msa0561500:intron | 20.0% |
| !!! | ATAACTGGCAATTTTTAAAA+TGG | - | chr4_1:61019284-61019303 | None:intergenic | 20.0% |
| !! | TCTCAAAAACATAAAATAAC+TGG | - | chr4_1:61019299-61019318 | None:intergenic | 20.0% |
| !! | TTTGAAAAAAATTGGAAAGT+TGG | + | chr4_1:61019790-61019809 | Msa0561500:intron | 20.0% |
| !! | TTATGTTTAATTATTGGTGT+TGG | + | chr4_1:61019992-61020011 | Msa0561500:intron | 20.0% |
| !!! | TATTCATTTTCTTGTTTACA+AGG | + | chr4_1:61020668-61020687 | Msa0561500:three_prime_UTR | 20.0% |
| !! | TATTAAGTAAACTGAATAGA+AGG | + | chr4_1:61020854-61020873 | Msa0561500:three_prime_UTR | 20.0% |
| ! | TTATTATAAGATAAGATGGC+TGG | + | chr4_1:61017081-61017100 | Msa0561500:exon | 25.0% |
| ! | ATGATTAATGAACTTTCACT+AGG | + | chr4_1:61017300-61017319 | Msa0561500:intron | 25.0% |
| ! | CTAACTTTCTTCTATAGTTA+CGG | + | chr4_1:61017850-61017869 | Msa0561500:intron | 25.0% |
| !!! | TTTATTTTCATAAGCTCTTC+GGG | + | chr4_1:61017982-61018001 | Msa0561500:intron | 25.0% |
| ! | CCCAAAATTGAATAAAATGA+TGG | + | chr4_1:61018126-61018145 | Msa0561500:intron | 25.0% |
| !! | GCCATCATTTTATTCAATTT+TGG | - | chr4_1:61018130-61018149 | None:intergenic | 25.0% |
| ! | ATCATAAATAAAGAACAAGG+AGG | - | chr4_1:61018466-61018485 | None:intergenic | 25.0% |
| ! | TAGTAATGAACCAGTAATTA+TGG | - | chr4_1:61018632-61018651 | None:intergenic | 25.0% |
| ! | AATAAGACATAGTAGAAACA+AGG | - | chr4_1:61018906-61018925 | None:intergenic | 25.0% |
| ! | TTCAAAATTACTGTGTTTAC+TGG | + | chr4_1:61019045-61019064 | Msa0561500:intron | 25.0% |
| !!! | AAGTTCTTTTTCATTCTGAA+GGG | + | chr4_1:61019068-61019087 | Msa0561500:intron | 25.0% |
| ! | TAGACGAAATATTAATACGA+CGG | - | chr4_1:61019163-61019182 | None:intergenic | 25.0% |
| !! | ATAAACAATGATGATGATGA+TGG | - | chr4_1:61019334-61019353 | None:intergenic | 25.0% |
| !! | AATTCAGGTTAAATATGCAA+GGG | - | chr4_1:61019486-61019505 | None:intergenic | 25.0% |
| !! | TAACCTGAATTGTGTTATTA+TGG | + | chr4_1:61019495-61019514 | Msa0561500:intron | 25.0% |
| !! | TATGTTTCAAAAATTGGCTT+AGG | + | chr4_1:61019633-61019652 | Msa0561500:intron | 25.0% |
| !! | ATGTTTCAAAAATTGGCTTA+GGG | + | chr4_1:61019634-61019653 | Msa0561500:intron | 25.0% |
| !! | GAATTTTGTCAAAACTGTTT+AGG | + | chr4_1:61019656-61019675 | Msa0561500:intron | 25.0% |
| !!! | AACTGTTTAGGTTTTTAATG+TGG | + | chr4_1:61019668-61019687 | Msa0561500:intron | 25.0% |
| !!! | ATCAGTTTTTTGACTCATTT+AGG | + | chr4_1:61019945-61019964 | Msa0561500:intron | 25.0% |
| !!! | TCAGTTTTTTGACTCATTTA+GGG | + | chr4_1:61019946-61019965 | Msa0561500:intron | 25.0% |
| ! | ATTATAAAGACACGTAAACT+GGG | - | chr4_1:61020108-61020127 | None:intergenic | 25.0% |
| !!! | AAACTAGTTCTGTATTGATT+TGG | - | chr4_1:61020284-61020303 | None:intergenic | 25.0% |
| ! | TAACAAAAATTGTATCTGAC+AGG | + | chr4_1:61020415-61020434 | Msa0561500:intron | 25.0% |
| ! | ACAACTGAATATACAACTTA+AGG | - | chr4_1:61020726-61020745 | None:intergenic | 25.0% |
| !! | ATGCTTAAAATTGCAGTTTT+GGG | + | chr4_1:61020825-61020844 | Msa0561500:three_prime_UTR | 25.0% |
| GGTTTATTGAGGAATATCTT+TGG | + | chr4_1:61017102-61017121 | Msa0561500:CDS | 30.0% | |
| !! | AATATCTTTGGTTTGAACGA+CGG | + | chr4_1:61017114-61017133 | Msa0561500:CDS | 30.0% |
| AATTGATGCCTTTAACAACA+AGG | + | chr4_1:61017152-61017171 | Msa0561500:CDS | 30.0% | |
| ATTGATGCCTTTAACAACAA+GGG | + | chr4_1:61017153-61017172 | Msa0561500:CDS | 30.0% | |
| ! | TTTTCTTGAACTATTGATCC+AGG | - | chr4_1:61017271-61017290 | None:intergenic | 30.0% |
| TCGTTGTTGTAGCAAAAAAT+AGG | + | chr4_1:61017603-61017622 | Msa0561500:intron | 30.0% | |
| TTATGACCAATGTGCAATTT+AGG | - | chr4_1:61018067-61018086 | None:intergenic | 30.0% | |
| TGCACATTGGTCATAATAAA+AGG | + | chr4_1:61018071-61018090 | Msa0561500:intron | 30.0% | |
| GCACATTGGTCATAATAAAA+GGG | + | chr4_1:61018072-61018091 | Msa0561500:intron | 30.0% | |
| AAAAGTAGCACCATAATTAC+TGG | + | chr4_1:61018619-61018638 | Msa0561500:intron | 30.0% | |
| !!! | GTATTTTACGGATTTTGACT+TGG | + | chr4_1:61018737-61018756 | Msa0561500:intron | 30.0% |
| GCTAATTGCTAATCAACAAA+TGG | - | chr4_1:61018785-61018804 | None:intergenic | 30.0% | |
| AAAACATGTTTGAAGATGAG+TGG | - | chr4_1:61018839-61018858 | None:intergenic | 30.0% | |
| TTACAGTATATTTGGCATTG+TGG | + | chr4_1:61018951-61018970 | Msa0561500:intron | 30.0% | |
| !! | GAAGTTCTTTTTCATTCTGA+AGG | + | chr4_1:61019067-61019086 | Msa0561500:intron | 30.0% |
| TGTAAAACAAAGTTGCTTCA+GGG | - | chr4_1:61019209-61019228 | None:intergenic | 30.0% | |
| TTGTAAAACAAAGTTGCTTC+AGG | - | chr4_1:61019210-61019229 | None:intergenic | 30.0% | |
| ! | CAATTCAGGTTAAATATGCA+AGG | - | chr4_1:61019487-61019506 | None:intergenic | 30.0% |
| CAACCATAATAACACAATTC+AGG | - | chr4_1:61019501-61019520 | None:intergenic | 30.0% | |
| !! | AAGATCACTTTGGAATTTCT+AGG | + | chr4_1:61019837-61019856 | Msa0561500:intron | 30.0% |
| ATAAGGTTTGATGAAATGAC+TGG | - | chr4_1:61020081-61020100 | None:intergenic | 30.0% | |
| GATTATAAAGACACGTAAAC+TGG | - | chr4_1:61020109-61020128 | None:intergenic | 30.0% | |
| !! | TGGATGGTATTTTAGAAAAC+TGG | - | chr4_1:61020172-61020191 | None:intergenic | 30.0% |
| !! | TTTCTAAAATACCATCCATG+TGG | + | chr4_1:61020174-61020193 | Msa0561500:intron | 30.0% |
| GACAGAGTATAACAAGAAAA+TGG | + | chr4_1:61020496-61020515 | Msa0561500:CDS | 30.0% | |
| TAACCTATCTGTCATATTCA+TGG | + | chr4_1:61020519-61020538 | Msa0561500:intron | 30.0% | |
| AGTATGACGAGTAAAACTAT+CGG | + | chr4_1:61020643-61020662 | Msa0561500:exon | 30.0% | |
| CGAGTAGTTTCAATTAACAT+AGG | - | chr4_1:61020699-61020718 | None:intergenic | 30.0% | |
| ATGTTAATTGAAACTACTCG+AGG | + | chr4_1:61020699-61020718 | Msa0561500:three_prime_UTR | 30.0% | |
| ! | GATGCTTAAAATTGCAGTTT+TGG | + | chr4_1:61020824-61020843 | Msa0561500:three_prime_UTR | 30.0% |
| ! | TTTTACCAAACTTGGAATCA+GGG | + | chr4_1:61020883-61020902 | Msa0561500:three_prime_UTR | 30.0% |
| !! | ATAAGATGGCTGGTTTATTG+AGG | + | chr4_1:61017091-61017110 | Msa0561500:exon | 35.0% |
| ! | AATGAGGCTGATTTCAAAAC+TGG | + | chr4_1:61017192-61017211 | Msa0561500:CDS | 35.0% |
| TAACGTCTTAGCTGAACTTT+GGG | + | chr4_1:61017385-61017404 | Msa0561500:intron | 35.0% | |
| ! | CCTGTCTGAAATGTGAATAA+TGG | - | chr4_1:61017639-61017658 | None:intergenic | 35.0% |
| CCATTATTCACATTTCAGAC+AGG | + | chr4_1:61017636-61017655 | Msa0561500:intron | 35.0% | |
| TCAAAAGAACGCTTCTTCTT+CGG | + | chr4_1:61017754-61017773 | Msa0561500:intron | 35.0% | |
| TTTCTTCTATAGTTACGGTC+TGG | + | chr4_1:61017855-61017874 | Msa0561500:intron | 35.0% | |
| !! | CTTATTTTCACAAGCTCTTC+AGG | + | chr4_1:61017914-61017933 | Msa0561500:intron | 35.0% |
| ! | AATGCTGCATTGAGTTTTTC+AGG | + | chr4_1:61018268-61018287 | Msa0561500:intron | 35.0% |
| !!! | GTTTTTCAGGAAACTAGTGT+TGG | + | chr4_1:61018281-61018300 | Msa0561500:intron | 35.0% |
| !!! | GTTCTTTTTTTGCACTGCTT+TGG | - | chr4_1:61018367-61018386 | None:intergenic | 35.0% |
| AAGAAGTAGAAGAAAGCAGT+GGG | - | chr4_1:61018426-61018445 | None:intergenic | 35.0% | |
| ACAAGAGTTTAGCTGCATTA+AGG | + | chr4_1:61018575-61018594 | Msa0561500:intron | 35.0% | |
| ! | TATACTATCGCGTAAGTTGA+TGG | + | chr4_1:61018705-61018724 | Msa0561500:intron | 35.0% |
| !! | ATACTATCGCGTAAGTTGAT+GGG | + | chr4_1:61018706-61018725 | Msa0561500:intron | 35.0% |
| ! | TGGGGTTCTGTTGTATTTTA+CGG | + | chr4_1:61018725-61018744 | Msa0561500:intron | 35.0% |
| !!! | TTTTACGGATTTTGACTTGG+AGG | + | chr4_1:61018740-61018759 | Msa0561500:intron | 35.0% |
| GACATAGTAGAAACAAGGAA+AGG | - | chr4_1:61018901-61018920 | None:intergenic | 35.0% | |
| ATAGTAGTATGATTGAGCAG+AGG | - | chr4_1:61018931-61018950 | None:intergenic | 35.0% | |
| !! | TTCTTTTTCATTCTGAAGGG+AGG | + | chr4_1:61019071-61019090 | Msa0561500:intron | 35.0% |
| GTAAAACAAAGTTGCTTCAG+GGG | - | chr4_1:61019208-61019227 | None:intergenic | 35.0% | |
| ! | GTGGAAAACAATGACTTTTG+AGG | + | chr4_1:61019439-61019458 | Msa0561500:CDS | 35.0% |
| TTGTCAGTTGTGATGTTTGA+CGG | + | chr4_1:61019586-61019605 | Msa0561500:intron | 35.0% | |
| AAGAAGTCATGATCAAGACA+TGG | - | chr4_1:61019715-61019734 | None:intergenic | 35.0% | |
| TGGAAAGTTGGAATTCATTG+CGG | + | chr4_1:61019802-61019821 | Msa0561500:intron | 35.0% | |
| CAAGTACTACAAACCTACAA+CGG | - | chr4_1:61020035-61020054 | None:intergenic | 35.0% | |
| CCATTGTCAGGAATTTAAAC+AGG | - | chr4_1:61020320-61020339 | None:intergenic | 35.0% | |
| CCTGTTTAAATTCCTGACAA+TGG | + | chr4_1:61020317-61020336 | Msa0561500:intron | 35.0% | |
| GCAAAAAAGAAACACCACTT+TGG | + | chr4_1:61020379-61020398 | Msa0561500:intron | 35.0% | |
| TAGCCATGAATATGACAGAT+AGG | - | chr4_1:61020525-61020544 | None:intergenic | 35.0% | |
| !! | TTTGTTTTCTGATGCTTTGC+AGG | + | chr4_1:61020584-61020603 | Msa0561500:intron | 35.0% |
| CGAATATGAAGAAACTGATG+AGG | + | chr4_1:61020614-61020633 | Msa0561500:CDS | 35.0% | |
| ! | GGTATTCCTTTTACCAAACT+TGG | + | chr4_1:61020875-61020894 | Msa0561500:three_prime_UTR | 35.0% |
| CTGATTCCAAGTTTGGTAAA+AGG | - | chr4_1:61020884-61020903 | None:intergenic | 35.0% | |
| ! | CTTTTACCAAACTTGGAATC+AGG | + | chr4_1:61020882-61020901 | Msa0561500:three_prime_UTR | 35.0% |
| TGGCGAACAAGATTTCAATG+AGG | + | chr4_1:61017176-61017195 | Msa0561500:CDS | 40.0% | |
| ACTGGAGCAAAAGTTACCAA+AGG | + | chr4_1:61017210-61017229 | Msa0561500:CDS | 40.0% | |
| CTGGAGCAAAAGTTACCAAA+GGG | + | chr4_1:61017211-61017230 | Msa0561500:CDS | 40.0% | |
| CGTAACAATGAACTTTCACC+TGG | + | chr4_1:61017250-61017269 | Msa0561500:intron | 40.0% | |
| CTAACGTCTTAGCTGAACTT+TGG | + | chr4_1:61017384-61017403 | Msa0561500:intron | 40.0% | |
| GTGAACTCTTCTATCTCTAG+AGG | - | chr4_1:61017423-61017442 | None:intergenic | 40.0% | |
| ATTCACATTTCAGACAGGTG+TGG | + | chr4_1:61017641-61017660 | Msa0561500:intron | 40.0% | |
| !! | TGATAGTTGAGAAGCACCAA+TGG | + | chr4_1:61017706-61017725 | Msa0561500:intron | 40.0% |
| !!! | GCTTTAGCTTTTTTCGCCAT+TGG | - | chr4_1:61017725-61017744 | None:intergenic | 40.0% |
| GGAGAGTAGAGAAAGTGAAA+GGG | - | chr4_1:61017796-61017815 | None:intergenic | 40.0% | |
| AGGAGAGTAGAGAAAGTGAA+AGG | - | chr4_1:61017797-61017816 | None:intergenic | 40.0% | |
| ! | TACTCTCCTTTTCGTTCACA+AGG | + | chr4_1:61017808-61017827 | Msa0561500:intron | 40.0% |
| ! | ACTCTCCTTTTCGTTCACAA+GGG | + | chr4_1:61017809-61017828 | Msa0561500:intron | 40.0% |
| ! | CTTTTCCCTTGTGAACGAAA+AGG | - | chr4_1:61017817-61017836 | None:intergenic | 40.0% |
| GGAAGACCTAAATTGCACAT+TGG | + | chr4_1:61018058-61018077 | Msa0561500:intron | 40.0% | |
| AAGGGACCAACAATGCAATT+AGG | + | chr4_1:61018090-61018109 | Msa0561500:intron | 40.0% | |
| !! | CAATTTTGGGTCTAAGACCA+AGG | - | chr4_1:61018116-61018135 | None:intergenic | 40.0% |
| TAGCTTCAGGTGTTAGTAGT+GGG | + | chr4_1:61018188-61018207 | Msa0561500:intron | 40.0% | |
| TTGGCGATCAAATCGAATGA+GGG | + | chr4_1:61018300-61018319 | Msa0561500:CDS | 40.0% | |
| AGAAGTAGAAGAAAGCAGTG+GGG | - | chr4_1:61018425-61018444 | None:intergenic | 40.0% | |
| CAAGAAGTAGAAGAAAGCAG+TGG | - | chr4_1:61018427-61018446 | None:intergenic | 40.0% | |
| ACTGATCTGTGTGTTTCCTT+TGG | + | chr4_1:61018679-61018698 | Msa0561500:intron | 40.0% | |
| ACGCGATAGTATAACTCCAA+AGG | - | chr4_1:61018698-61018717 | None:intergenic | 40.0% | |
| !! | TACTATCGCGTAAGTTGATG+GGG | + | chr4_1:61018707-61018726 | Msa0561500:intron | 40.0% |
| TCTCAACTCTTGAACTTGAG+GGG | - | chr4_1:61018813-61018832 | None:intergenic | 40.0% | |
| GTCTCAACTCTTGAACTTGA+GGG | - | chr4_1:61018814-61018833 | None:intergenic | 40.0% | |
| TGTCTCAACTCTTGAACTTG+AGG | - | chr4_1:61018815-61018834 | None:intergenic | 40.0% | |
| !! | CATTCTGAAGGGAGGATTTT+CGG | + | chr4_1:61019079-61019098 | Msa0561500:intron | 40.0% |
| !! | TCACGCATTGACTTAACATC+TGG | - | chr4_1:61019126-61019145 | None:intergenic | 40.0% |
| CAATCTGTATGAACACGGAA+AGG | - | chr4_1:61019400-61019419 | None:intergenic | 40.0% | |
| CTTTCCGTGTTCATACAGAT+TGG | + | chr4_1:61019398-61019417 | Msa0561500:intron | 40.0% | |
| CTTGCCAATCTGTATGAACA+CGG | - | chr4_1:61019405-61019424 | None:intergenic | 40.0% | |
| AGCAGAACTGAAGATCACTT+TGG | + | chr4_1:61019827-61019846 | Msa0561500:intron | 40.0% | |
| ATCCATGTGGAAACTTACCT+GGG | + | chr4_1:61020187-61020206 | Msa0561500:intron | 40.0% | |
| ATACTTGACACTCCATTGTC+AGG | - | chr4_1:61020332-61020351 | None:intergenic | 40.0% | |
| AACATAGAGCTCAACCAAAG+TGG | - | chr4_1:61020396-61020415 | None:intergenic | 40.0% | |
| ! | CTAGCGAACTGACTCTTATT+TGG | + | chr4_1:61020542-61020561 | Msa0561500:intron | 40.0% |
| TATTCAGTTGTAGTCAGCTC+TGG | + | chr4_1:61020735-61020754 | Msa0561500:three_prime_UTR | 40.0% | |
| !! | ATCTTTGGTTTGAACGACGG+TGG | + | chr4_1:61017117-61017136 | Msa0561500:CDS | 45.0% |
| TTGAACGACGGTGGAAACAA+TGG | + | chr4_1:61017126-61017145 | Msa0561500:CDS | 45.0% | |
| GATGCCTTTAACAACAAGGG+TGG | + | chr4_1:61017156-61017175 | Msa0561500:CDS | 45.0% | |
| !! | TTCGCCACCCTTGTTGTTAA+AGG | - | chr4_1:61017163-61017182 | None:intergenic | 45.0% |
| GAGCAAAAGTTACCAAAGGG+TGG | + | chr4_1:61017214-61017233 | Msa0561500:intron | 45.0% | |
| TGAGTAGTGTAACCACCCTT+TGG | - | chr4_1:61017229-61017248 | None:intergenic | 45.0% | |
| GGGTTGTTCACATTTCAGAC+AGG | + | chr4_1:61017669-61017688 | Msa0561500:intron | 45.0% | |
| GTTCACATTTCAGACAGGTG+TGG | + | chr4_1:61017674-61017693 | Msa0561500:intron | 45.0% | |
| !! | AGCGTTCTTTTGAGAGTGAG+AGG | - | chr4_1:61017747-61017766 | None:intergenic | 45.0% |
| !! | AGAGAAAGTGAAAGGGTACC+CGG | - | chr4_1:61017789-61017808 | None:intergenic | 45.0% |
| CCAAGGCCTAATTGCATTGT+TGG | - | chr4_1:61018099-61018118 | None:intergenic | 45.0% | |
| CCAACAATGCAATTAGGCCT+TGG | + | chr4_1:61018096-61018115 | Msa0561500:intron | 45.0% | |
| TGTGAGTTTCAACCGTGTCT+AGG | + | chr4_1:61018155-61018174 | Msa0561500:intron | 45.0% | |
| ! | TAGAGGTGTAGACCTAGACA+CGG | - | chr4_1:61018170-61018189 | None:intergenic | 45.0% |
| CTACTAACACCTGAAGCTAG+AGG | - | chr4_1:61018187-61018206 | None:intergenic | 45.0% | |
| CTAGCTTCAGGTGTTAGTAG+TGG | + | chr4_1:61018187-61018206 | Msa0561500:intron | 45.0% | |
| AGCTTCAGGTGTTAGTAGTG+GGG | + | chr4_1:61018189-61018208 | Msa0561500:intron | 45.0% | |
| GTTGGCGATCAAATCGAATG+AGG | + | chr4_1:61018299-61018318 | Msa0561500:CDS | 45.0% | |
| AGGGAATGAAGAGATCGTTG+CGG | + | chr4_1:61018319-61018338 | Msa0561500:CDS | 45.0% | |
| AAGTAGAAGAAAGCAGTGGG+GGG | - | chr4_1:61018423-61018442 | None:intergenic | 45.0% | |
| GAAGTAGAAGAAAGCAGTGG+GGG | - | chr4_1:61018424-61018443 | None:intergenic | 45.0% | |
| !!! | CGGATTTTGACTTGGAGGAA+TGG | + | chr4_1:61018745-61018764 | Msa0561500:intron | 45.0% |
| CTCAACTCTTGAACTTGAGG+GGG | - | chr4_1:61018812-61018831 | None:intergenic | 45.0% | |
| TCTGTATGAACACGGAAAGG+AGG | - | chr4_1:61019397-61019416 | None:intergenic | 45.0% | |
| CGTGTTCATACAGATTGGCA+AGG | + | chr4_1:61019403-61019422 | Msa0561500:intron | 45.0% | |
| ATACAGATTGGCAAGGCATG+TGG | + | chr4_1:61019410-61019429 | Msa0561500:intron | 45.0% | |
| ! | GTTAACACGAGTACCGTTGT+AGG | + | chr4_1:61020019-61020038 | Msa0561500:intron | 45.0% |
| ! | CACGTAAACTGGGTGCTATA+AGG | - | chr4_1:61020098-61020117 | None:intergenic | 45.0% |
| CAGGTAAGTTTCCACATGGA+TGG | - | chr4_1:61020188-61020207 | None:intergenic | 45.0% | |
| CATCCATGTGGAAACTTACC+TGG | + | chr4_1:61020186-61020205 | Msa0561500:intron | 45.0% | |
| TGGAAACTTACCTGGGACTA+AGG | + | chr4_1:61020194-61020213 | Msa0561500:intron | 45.0% | |
| ! | AGCTTCTTCTTGATAGCAGC+AGG | - | chr4_1:61020230-61020249 | None:intergenic | 45.0% |
| TCTGATGCTTTGCAGGAAAG+CGG | + | chr4_1:61020591-61020610 | Msa0561500:intron | 45.0% | |
| GAAGACCCTGATTCCAAGTT+TGG | - | chr4_1:61020891-61020910 | None:intergenic | 45.0% | |
| !!! | TTCATATTATTTTTAAATTA+AGG | - | chr4_1:61017573-61017592 | None:intergenic | 5.0% |
| TTTCAGACAGGTGTGGTTGC+AGG | + | chr4_1:61017648-61017667 | Msa0561500:intron | 50.0% | |
| TTCAGACAGGTGTGGTTGCA+GGG | + | chr4_1:61017649-61017668 | Msa0561500:intron | 50.0% | |
| TTTCAGACAGGTGTGGTTGC+AGG | + | chr4_1:61017648-61017667 | Msa0561500:intron | 50.0% | |
| TTCAGACAGGTGTGGTTGCA+GGG | + | chr4_1:61017649-61017668 | Msa0561500:intron | 50.0% | |
| ! | AGGTCTACACCTCTAGCTTC+AGG | + | chr4_1:61018175-61018194 | Msa0561500:intron | 50.0% |
| AAAGCAGTGGGGGGTTTCTT+CGG | - | chr4_1:61018414-61018433 | None:intergenic | 50.0% | |
| AGTTGCAGAACTGTCTCCTC+TGG | + | chr4_1:61019898-61019917 | Msa0561500:intron | 50.0% | |
| TCTCCTCTGGTTGGAATTCC+AGG | + | chr4_1:61019911-61019930 | Msa0561500:intron | 50.0% | |
| AACTGATGATCATGCCAGCC+TGG | - | chr4_1:61019932-61019951 | None:intergenic | 50.0% | |
| GTCCCAGGTAAGTTTCCACA+TGG | - | chr4_1:61020192-61020211 | None:intergenic | 50.0% | |
| !! | GAAAGTGAAAGGGTACCCGG+AGG | - | chr4_1:61017786-61017805 | None:intergenic | 55.0% |
| GACTTGGAGGAATGGTGCAG+AGG | + | chr4_1:61018753-61018772 | Msa0561500:intron | 55.0% | |
| TTGGAGGAATGGTGCAGAGG+AGG | + | chr4_1:61018756-61018775 | Msa0561500:intron | 55.0% | |
| GCAAGGCATGTGGAGAGAAG+TGG | + | chr4_1:61019420-61019439 | Msa0561500:CDS | 55.0% | |
| GCAGAACTGTCTCCTCTGGT+TGG | + | chr4_1:61019902-61019921 | Msa0561500:intron | 55.0% | |
| CAGCCTGGAATTCCAACCAG+AGG | - | chr4_1:61019917-61019936 | None:intergenic | 55.0% | |
| CTCTGGTTGGAATTCCAGGC+TGG | + | chr4_1:61019915-61019934 | Msa0561500:intron | 55.0% | |
| CTTTCACGTGCCTTAGTCCC+AGG | - | chr4_1:61020207-61020226 | None:intergenic | 55.0% | |
| TCTTCTTCGGCCTCCACCTC+CGG | + | chr4_1:61017767-61017786 | Msa0561500:intron | 60.0% | |
| !! | AGTGAAAGGGTACCCGGAGG+TGG | - | chr4_1:61017783-61017802 | None:intergenic | 60.0% |
| CTTCTTCGGCCTCCACCTCC+GGG | + | chr4_1:61017768-61017787 | Msa0561500:intron | 65.0% | |
| !! | GAAAGGGTACCCGGAGGTGG+AGG | - | chr4_1:61017780-61017799 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61017012 | 61020930 | 61017012 | ID=Msa0561500;Name=Msa0561500 |
| chr4_1 | mRNA | 61017012 | 61020930 | 61017012 | ID=Msa0561500-mRNA-1;Parent=Msa0561500;Name=Msa0561500-mRNA-1;_AED=0.20;_eAED=0.20;_QI=84|0.8|1|1|0.8|0.83|6|274|175 |
| chr4_1 | exon | 61017012 | 61017232 | 61017012 | ID=Msa0561500-mRNA-1:exon:19103;Parent=Msa0561500-mRNA-1 |
| chr4_1 | exon | 61018290 | 61018445 | 61018290 | ID=Msa0561500-mRNA-1:exon:19104;Parent=Msa0561500-mRNA-1 |
| chr4_1 | exon | 61019089 | 61019146 | 61019089 | ID=Msa0561500-mRNA-1:exon:19105;Parent=Msa0561500-mRNA-1 |
| chr4_1 | exon | 61019416 | 61019460 | 61019416 | ID=Msa0561500-mRNA-1:exon:19106;Parent=Msa0561500-mRNA-1 |
| chr4_1 | exon | 61020437 | 61020517 | 61020437 | ID=Msa0561500-mRNA-1:exon:19107;Parent=Msa0561500-mRNA-1 |
| chr4_1 | exon | 61020606 | 61020930 | 61020606 | ID=Msa0561500-mRNA-1:exon:19108;Parent=Msa0561500-mRNA-1 |
| chr4_1 | five_prime_UTR | 61017012 | 61017095 | 61017012 | ID=Msa0561500-mRNA-1:five_prime_utr;Parent=Msa0561500-mRNA-1 |
| chr4_1 | CDS | 61017096 | 61017232 | 61017096 | ID=Msa0561500-mRNA-1:cds;Parent=Msa0561500-mRNA-1 |
| chr4_1 | CDS | 61018290 | 61018445 | 61018290 | ID=Msa0561500-mRNA-1:cds;Parent=Msa0561500-mRNA-1 |
| chr4_1 | CDS | 61019089 | 61019146 | 61019089 | ID=Msa0561500-mRNA-1:cds;Parent=Msa0561500-mRNA-1 |
| chr4_1 | CDS | 61019416 | 61019460 | 61019416 | ID=Msa0561500-mRNA-1:cds;Parent=Msa0561500-mRNA-1 |
| chr4_1 | CDS | 61020437 | 61020517 | 61020437 | ID=Msa0561500-mRNA-1:cds;Parent=Msa0561500-mRNA-1 |
| chr4_1 | CDS | 61020606 | 61020656 | 61020606 | ID=Msa0561500-mRNA-1:cds;Parent=Msa0561500-mRNA-1 |
| chr4_1 | three_prime_UTR | 61020657 | 61020930 | 61020657 | ID=Msa0561500-mRNA-1:three_prime_utr;Parent=Msa0561500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
