Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563070 | PNX99521.1 | 62.033 | 669 | 167 | 12 | 1 | 586 | 1 | 665 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563070 | sp|Q9SY66|FRS11_ARATH | 50.193 | 259 | 119 | 3 | 53 | 307 | 47 | 299 | 3.26e-80 | 269 |
| Msa0563070 | sp|Q9SY66|FRS11_ARATH | 44.503 | 191 | 105 | 1 | 307 | 496 | 475 | 665 | 6.65e-45 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563070 | A0A2K3N8Z5 | 62.033 | 669 | 167 | 12 | 1 | 586 | 1 | 665 | 0.0 | 780 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0563070 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563070 | MtrunA17_Chr5g0431001 | 71.293 | 317 | 81 | 2 | 1 | 307 | 1 | 317 | 1.35e-155 | 456 |
| Msa0563070 | MtrunA17_Chr1g0198761 | 69.775 | 311 | 82 | 3 | 1 | 307 | 1 | 303 | 2.88e-143 | 433 |
| Msa0563070 | MtrunA17_Chr1g0198761 | 73.239 | 284 | 72 | 2 | 307 | 589 | 479 | 759 | 6.32e-141 | 427 |
| Msa0563070 | MtrunA17_Chr2g0276841 | 44.369 | 293 | 146 | 4 | 19 | 307 | 42 | 321 | 1.27e-81 | 270 |
| Msa0563070 | MtrunA17_Chr2g0276841 | 44.330 | 194 | 101 | 3 | 307 | 496 | 497 | 687 | 9.36e-45 | 169 |
| Msa0563070 | MtrunA17_Chr2g0294841 | 46.565 | 262 | 127 | 4 | 53 | 307 | 44 | 299 | 9.89e-71 | 242 |
| Msa0563070 | MtrunA17_Chr2g0294841 | 34.173 | 278 | 155 | 6 | 307 | 563 | 475 | 745 | 4.35e-43 | 165 |
| Msa0563070 | MtrunA17_Chr2g0290391 | 45.353 | 269 | 125 | 4 | 53 | 307 | 50 | 310 | 2.77e-69 | 237 |
| Msa0563070 | MtrunA17_Chr2g0290391 | 47.120 | 191 | 84 | 5 | 307 | 490 | 486 | 666 | 2.66e-38 | 150 |
| Msa0563070 | MtrunA17_Chr3g0081281 | 87.097 | 93 | 12 | 0 | 199 | 291 | 1 | 93 | 2.37e-49 | 166 |
| Msa0563070 | MtrunA17_Chr5g0430921 | 79.545 | 88 | 15 | 1 | 493 | 580 | 1 | 85 | 3.37e-41 | 144 |
| Msa0563070 | MtrunA17_Chr2g0287651 | 31.559 | 263 | 160 | 8 | 50 | 306 | 74 | 322 | 8.10e-29 | 122 |
| Msa0563070 | MtrunA17_Chr1g0203051 | 27.869 | 244 | 165 | 5 | 66 | 307 | 91 | 325 | 1.67e-25 | 111 |
| Msa0563070 | MtrunA17_Chr5g0448761 | 29.615 | 260 | 170 | 5 | 54 | 307 | 60 | 312 | 5.90e-24 | 107 |
| Msa0563070 | MtrunA17_Chr8g0363841 | 29.412 | 255 | 169 | 6 | 55 | 307 | 18 | 263 | 1.05e-23 | 105 |
| Msa0563070 | MtrunA17_Chr6g0458391 | 29.885 | 261 | 157 | 6 | 47 | 307 | 219 | 453 | 1.43e-23 | 105 |
| Msa0563070 | MtrunA17_Chr5g0441581 | 28.682 | 258 | 161 | 8 | 52 | 307 | 30 | 266 | 3.45e-22 | 101 |
| Msa0563070 | MtrunA17_Chr1g0202341 | 26.460 | 291 | 198 | 7 | 19 | 307 | 20 | 296 | 7.44e-22 | 100 |
| Msa0563070 | MtrunA17_Chr1g0202341 | 29.851 | 134 | 89 | 1 | 310 | 438 | 475 | 608 | 5.84e-11 | 65.5 |
| Msa0563070 | MtrunA17_Chr2g0287061 | 31.250 | 256 | 129 | 9 | 54 | 307 | 183 | 393 | 3.60e-20 | 95.1 |
| Msa0563070 | MtrunA17_Chr1g0203721 | 27.586 | 261 | 164 | 7 | 57 | 307 | 66 | 311 | 7.74e-20 | 94.0 |
| Msa0563070 | MtrunA17_Chr2g0296781 | 28.400 | 250 | 163 | 6 | 60 | 307 | 3 | 238 | 1.76e-19 | 92.8 |
| Msa0563070 | MtrunA17_Chr3g0080351 | 25.926 | 270 | 150 | 7 | 54 | 307 | 76 | 311 | 4.18e-18 | 88.6 |
| Msa0563070 | MtrunA17_Chr1g0207551 | 28.077 | 260 | 165 | 7 | 54 | 307 | 34 | 277 | 1.43e-16 | 83.6 |
| Msa0563070 | MtrunA17_Chr7g0258861 | 24.060 | 266 | 189 | 5 | 46 | 308 | 2 | 257 | 4.86e-16 | 79.3 |
| Msa0563070 | MtrunA17_Chr2g0329031 | 26.772 | 254 | 157 | 7 | 60 | 307 | 20 | 250 | 8.47e-16 | 80.9 |
| Msa0563070 | MtrunA17_Chr2g0324011 | 24.621 | 264 | 185 | 6 | 46 | 306 | 2 | 254 | 3.23e-15 | 79.0 |
| Msa0563070 | MtrunA17_Chr1g0196541 | 25.681 | 257 | 161 | 7 | 60 | 307 | 3 | 238 | 2.98e-14 | 76.3 |
| Msa0563070 | MtrunA17_Chr1g0171741 | 32.203 | 118 | 68 | 3 | 60 | 174 | 139 | 247 | 1.12e-13 | 71.6 |
| Msa0563070 | MtrunA17_Chr6g0477261 | 36.800 | 125 | 77 | 2 | 184 | 307 | 4 | 127 | 1.78e-13 | 73.6 |
| Msa0563070 | MtrunA17_Chr5g0440451 | 32.609 | 138 | 84 | 3 | 329 | 461 | 489 | 622 | 1.88e-12 | 70.5 |
| Msa0563070 | MtrunA17_Chr2g0329421 | 32.787 | 122 | 69 | 4 | 44 | 162 | 16 | 127 | 5.20e-11 | 62.8 |
| Msa0563070 | MtrunA17_Chr5g0448511 | 32.308 | 130 | 83 | 1 | 310 | 434 | 263 | 392 | 7.55e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563070 | AT1G10240.2 | 50.193 | 259 | 119 | 3 | 53 | 307 | 47 | 299 | 3.31e-81 | 269 |
| Msa0563070 | AT1G10240.2 | 44.503 | 191 | 105 | 1 | 307 | 496 | 475 | 665 | 6.76e-46 | 172 |
| Msa0563070 | AT1G10240.1 | 50.193 | 259 | 119 | 3 | 53 | 307 | 47 | 299 | 3.31e-81 | 269 |
| Msa0563070 | AT1G10240.1 | 44.503 | 191 | 105 | 1 | 307 | 496 | 475 | 665 | 6.76e-46 | 172 |
| Msa0563070 | AT5G28530.1 | 46.959 | 296 | 135 | 5 | 25 | 307 | 28 | 314 | 9.60e-78 | 260 |
| Msa0563070 | AT5G28530.1 | 38.947 | 190 | 102 | 4 | 310 | 491 | 491 | 674 | 2.46e-33 | 135 |
| Msa0563070 | AT5G28530.3 | 46.959 | 296 | 135 | 5 | 25 | 307 | 28 | 314 | 1.16e-77 | 259 |
| Msa0563070 | AT5G28530.3 | 42.857 | 168 | 82 | 4 | 332 | 491 | 509 | 670 | 9.15e-33 | 134 |
| Msa0563070 | AT5G28530.2 | 46.959 | 296 | 135 | 5 | 25 | 307 | 28 | 314 | 1.16e-77 | 259 |
| Msa0563070 | AT5G28530.2 | 42.857 | 168 | 82 | 4 | 332 | 491 | 509 | 670 | 9.15e-33 | 134 |
| Msa0563070 | AT5G28530.4 | 41.667 | 264 | 134 | 5 | 25 | 277 | 28 | 282 | 2.39e-54 | 195 |
| Msa0563070 | AT5G28530.4 | 38.947 | 190 | 102 | 4 | 310 | 491 | 428 | 611 | 2.28e-33 | 135 |
| Msa0563070 | AT5G28530.5 | 41.667 | 264 | 134 | 5 | 25 | 277 | 28 | 282 | 3.03e-54 | 195 |
| Msa0563070 | AT5G28530.5 | 41.341 | 179 | 89 | 5 | 332 | 502 | 446 | 616 | 8.00e-33 | 134 |
| Msa0563070 | AT4G38180.1 | 29.286 | 280 | 183 | 5 | 30 | 307 | 55 | 321 | 1.55e-26 | 115 |
| Msa0563070 | AT4G15090.1 | 29.811 | 265 | 157 | 8 | 54 | 307 | 51 | 297 | 1.98e-19 | 93.2 |
| Msa0563070 | AT4G15090.5 | 29.811 | 265 | 157 | 8 | 54 | 307 | 51 | 297 | 1.98e-19 | 93.2 |
| Msa0563070 | AT4G15090.3 | 29.811 | 265 | 157 | 8 | 54 | 307 | 51 | 297 | 1.98e-19 | 93.2 |
| Msa0563070 | AT4G15090.2 | 29.811 | 265 | 157 | 8 | 54 | 307 | 51 | 297 | 1.98e-19 | 93.2 |
| Msa0563070 | AT4G15090.4 | 29.811 | 265 | 157 | 8 | 54 | 307 | 51 | 297 | 1.98e-19 | 93.2 |
| Msa0563070 | AT1G76320.1 | 27.203 | 261 | 158 | 8 | 60 | 312 | 3 | 239 | 1.86e-17 | 86.7 |
| Msa0563070 | AT1G76320.4 | 27.203 | 261 | 158 | 8 | 60 | 312 | 3 | 239 | 1.86e-17 | 86.7 |
| Msa0563070 | AT1G76320.2 | 27.203 | 261 | 158 | 8 | 60 | 312 | 3 | 239 | 1.94e-17 | 86.7 |
| Msa0563070 | AT1G76320.3 | 27.203 | 261 | 158 | 8 | 60 | 312 | 3 | 239 | 3.24e-17 | 85.9 |
| Msa0563070 | AT3G22170.2 | 25.651 | 269 | 153 | 8 | 54 | 307 | 70 | 306 | 1.19e-16 | 84.3 |
| Msa0563070 | AT3G22170.1 | 25.651 | 269 | 153 | 8 | 54 | 307 | 70 | 306 | 1.19e-16 | 84.3 |
| Msa0563070 | AT3G59470.3 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 7.51e-14 | 72.4 |
| Msa0563070 | AT3G59470.1 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 7.51e-14 | 72.4 |
| Msa0563070 | AT3G59470.2 | 37.273 | 110 | 61 | 3 | 54 | 163 | 82 | 183 | 1.00e-13 | 72.0 |
| Msa0563070 | AT2G27110.2 | 24.016 | 254 | 159 | 4 | 54 | 307 | 49 | 268 | 1.41e-12 | 71.2 |
| Msa0563070 | AT2G27110.1 | 24.016 | 254 | 159 | 4 | 54 | 307 | 49 | 268 | 1.41e-12 | 71.2 |
| Msa0563070 | AT4G38170.1 | 28.033 | 239 | 142 | 7 | 331 | 550 | 286 | 513 | 6.01e-12 | 68.9 |
Find 91 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATAATTTGATTTATT+TGG | 0.093166 | 4_1:+63366113 | Msa0563070:CDS |
| TACAGGTAACTTACCATTTC+TGG | 0.139830 | 4_1:+63365133 | Msa0563070:CDS |
| ACATCATAACCATCATTATT+TGG | 0.153794 | 4_1:-63366156 | None:intergenic |
| CTAAAGGCTTTGAAGGAAAA+TGG | 0.187093 | 4_1:+63364931 | Msa0563070:CDS |
| ACAAACTAGAGCATATTATT+TGG | 0.199763 | 4_1:+63365294 | Msa0563070:CDS |
| TTGACTATGTGACTGCATTT+TGG | 0.212419 | 4_1:-63365949 | None:intergenic |
| ACAATCAGAACTTACTTATT+AGG | 0.237831 | 4_1:-63366357 | None:intergenic |
| ATCAAATTATCTTGACTTGC+AGG | 0.274591 | 4_1:-63366105 | None:intergenic |
| GAGCATATTATTTGGGCATT+TGG | 0.276151 | 4_1:+63365302 | Msa0563070:CDS |
| AGTACCATAATTCTCTAATT+AGG | 0.289351 | 4_1:+63365602 | Msa0563070:CDS |
| ACATATGAAGATGATGAATA+TGG | 0.290862 | 4_1:+63364573 | Msa0563070:CDS |
| ATTCGAGCATATGAATCTTT+TGG | 0.301566 | 4_1:+63365332 | Msa0563070:CDS |
| TTGTCCTAATTAGAGAATTA+TGG | 0.303893 | 4_1:-63365606 | None:intergenic |
| TAGTTCCAGGCTGAGGTTCT+TGG | 0.304969 | 4_1:-63364623 | None:intergenic |
| TGATTGGTTCCGCCGCAATT+TGG | 0.306685 | 4_1:-63366276 | None:intergenic |
| GTGACAACGTCGAAGCTTCT+TGG | 0.321956 | 4_1:-63366250 | None:intergenic |
| TTTGCAGCATGTTCCTCAAT+AGG | 0.334456 | 4_1:-63365634 | None:intergenic |
| GCAGCTTCAACTCCACCTTT+TGG | 0.341287 | 4_1:-63366228 | None:intergenic |
| CACATAGTCAAATGCAATAA+TGG | 0.343756 | 4_1:+63365961 | Msa0563070:CDS |
| AAATTCCTCCGACAGATAAA+AGG | 0.354413 | 4_1:+63366078 | Msa0563070:CDS |
| CTAATATCCTTCTCCAGAAA+TGG | 0.365717 | 4_1:-63365146 | None:intergenic |
| TGCCACTTGGAATGTGGATT+GGG | 0.366378 | 4_1:+63365402 | Msa0563070:CDS |
| CAAACTAGAGCATATTATTT+GGG | 0.370107 | 4_1:+63365295 | Msa0563070:CDS |
| TCAGTCTCTAATTCGATGTT+TGG | 0.382120 | 4_1:+63365999 | Msa0563070:CDS |
| TTGGTTTCTAAAGGCTTTGA+AGG | 0.384106 | 4_1:+63364924 | Msa0563070:CDS |
| ATGTAAAAGTCTGAAAGATA+TGG | 0.416400 | 4_1:+63365232 | Msa0563070:CDS |
| TAAAGGCTTTGAAGGAAAAT+GGG | 0.419353 | 4_1:+63364932 | Msa0563070:CDS |
| TCATCAACAGTACTAGTTCC+AGG | 0.424449 | 4_1:-63364636 | None:intergenic |
| AAATACATTGTAAAATTCAT+AGG | 0.433492 | 4_1:-63364703 | None:intergenic |
| TTTGGAACATCGGGTACATT+GGG | 0.437206 | 4_1:-63366138 | None:intergenic |
| GCAAAGTTGTTGGTTTCTAA+AGG | 0.440350 | 4_1:+63364915 | Msa0563070:CDS |
| CCATCATTATTTGGAACATC+GGG | 0.457944 | 4_1:-63366147 | None:intergenic |
| ACAATTCCGCGAGTCATGAT+TGG | 0.463296 | 4_1:-63366292 | None:intergenic |
| TAGACGACCACCATCAACTT+TGG | 0.465253 | 4_1:-63365761 | None:intergenic |
| CTTTCTCTTCTCCATCGAAA+AGG | 0.467284 | 4_1:-63365916 | None:intergenic |
| TAAGAAATAATGCTAGTGAT+TGG | 0.472650 | 4_1:+63364520 | Msa0563070:CDS |
| AACTAGTACTGTTGATGAAT+GGG | 0.473531 | 4_1:+63364641 | Msa0563070:CDS |
| TTAGAGAAATCAATAGATAC+AGG | 0.477570 | 4_1:+63365116 | Msa0563070:CDS |
| CGACATCATACCAAAGTTGA+TGG | 0.478069 | 4_1:+63365751 | Msa0563070:CDS |
| ATTTGGAACATCGGGTACAT+TGG | 0.482649 | 4_1:-63366139 | None:intergenic |
| GAACTAGTACTGTTGATGAA+TGG | 0.484793 | 4_1:+63364640 | Msa0563070:CDS |
| TGGATTAACTCAAACGCATA+TGG | 0.491586 | 4_1:-63365667 | None:intergenic |
| AAATCCAAAGGTCGGCCAAA+AGG | 0.496241 | 4_1:+63366198 | Msa0563070:CDS |
| TGGATAGGATCACAAAGGGT+TGG | 0.496334 | 4_1:+63366443 | Msa0563070:intron |
| TAGTTGTAGCGCAAAGTTGT+TGG | 0.498154 | 4_1:+63364905 | Msa0563070:CDS |
| CCAAAAGGTTCAAGGCCAAA+AGG | 0.499841 | 4_1:+63366213 | Msa0563070:CDS |
| GAGTCTGAAGATAATCCATC+AGG | 0.500480 | 4_1:+63364783 | Msa0563070:CDS |
| ATATTATTGTTATCAAAAGC+AGG | 0.503849 | 4_1:+63365059 | Msa0563070:CDS |
| ATAATTGTTACCTGTCTGAA+TGG | 0.504420 | 4_1:-63365722 | None:intergenic |
| ATGCCACTTGGAATGTGGAT+TGG | 0.511770 | 4_1:+63365401 | Msa0563070:CDS |
| ACCATCATTATTTGGAACAT+CGG | 0.512682 | 4_1:-63366148 | None:intergenic |
| GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 4_1:+63364819 | Msa0563070:CDS |
| AAATATGCTGCCATTCAGAC+AGG | 0.519399 | 4_1:+63365712 | Msa0563070:CDS |
| CCCGATGTTCCAAATAATGA+TGG | 0.520874 | 4_1:+63366147 | Msa0563070:CDS |
| TAGACAATTCAATCTCATGT+TGG | 0.528559 | 4_1:-63365687 | None:intergenic |
| AAAGGAAACGGAAATCTTCA+CGG | 0.530189 | 4_1:+63364880 | Msa0563070:CDS |
| CCAGGCTGAGGTTCTTGGTG+TGG | 0.530208 | 4_1:-63364618 | None:intergenic |
| AAGGTCGGCCAAAAGGTTCA+AGG | 0.530766 | 4_1:+63366205 | Msa0563070:CDS |
| CATCTAATAACTCATGGTTG+TGG | 0.533149 | 4_1:-63364977 | None:intergenic |
| TAACTTACCATTTCTGGAGA+AGG | 0.534997 | 4_1:+63365139 | Msa0563070:CDS |
| TTCCAAGTGGCATATCATAA+CGG | 0.535191 | 4_1:-63365391 | None:intergenic |
| ATGGTGGTCGTCTAGTAAGC+TGG | 0.537867 | 4_1:+63365770 | Msa0563070:CDS |
| CCTTGTCATCTAATAACTCA+TGG | 0.543022 | 4_1:-63364983 | None:intergenic |
| CCACACCAAGAACCTCAGCC+TGG | 0.549756 | 4_1:+63364618 | Msa0563070:CDS |
| AACCGTTATGATATGCCACT+TGG | 0.555362 | 4_1:+63365389 | Msa0563070:CDS |
| CGTTGTCACGTTCCAAATTG+CGG | 0.556435 | 4_1:+63366264 | Msa0563070:CDS |
| TTCTTGGATAGGATCACAAA+GGG | 0.557354 | 4_1:+63366439 | Msa0563070:intron |
| ATTGGGATGTTACGATAAGC+GGG | 0.561005 | 4_1:-63365020 | None:intergenic |
| TAGACATCAAGCAGGAGAAG+AGG | 0.565504 | 4_1:+63365564 | Msa0563070:CDS |
| GCTCTGTGAGTCTCATAATG+AGG | 0.566820 | 4_1:+63365084 | Msa0563070:CDS |
| GTCAAAATTAGACATCAAGC+AGG | 0.568777 | 4_1:+63365556 | Msa0563070:CDS |
| TTGTTTCAAAATCCAAAGGT+CGG | 0.583293 | 4_1:+63366190 | Msa0563070:CDS |
| CCTGTTGTTTCAAAATCCAA+AGG | 0.583885 | 4_1:+63366186 | Msa0563070:CDS |
| CTCTGTGAGTCTCATAATGA+GGG | 0.585899 | 4_1:+63365085 | Msa0563070:CDS |
| CCATGAGTTATTAGATGACA+AGG | 0.586581 | 4_1:+63364983 | Msa0563070:CDS |
| AATTGGGATGTTACGATAAG+CGG | 0.587373 | 4_1:-63365021 | None:intergenic |
| ATCATTAAAGACAAAAGAGA+GGG | 0.596933 | 4_1:+63366029 | Msa0563070:CDS |
| ACAGTACTAGTTCCAGGCTG+AGG | 0.603967 | 4_1:-63364630 | None:intergenic |
| ATGATATGCCACTTGGAATG+TGG | 0.611489 | 4_1:+63365396 | Msa0563070:CDS |
| ATTAAGGATTAATATGACAT+CGG | 0.612508 | 4_1:+63364494 | None:intergenic |
| AGGCTTTGAAGGAAAATGGG+TGG | 0.631084 | 4_1:+63364935 | Msa0563070:CDS |
| AAAGGTTCAAGGCCAAAAGG+TGG | 0.631199 | 4_1:+63366216 | Msa0563070:CDS |
| AATCATTAAAGACAAAAGAG+AGG | 0.632966 | 4_1:+63366028 | Msa0563070:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 4_1:-63366345 | None:intergenic |
| GCCACTTGGAATGTGGATTG+GGG | 0.646236 | 4_1:+63365403 | Msa0563070:CDS |
| GTTCTTGGATAGGATCACAA+AGG | 0.649286 | 4_1:+63366438 | Msa0563070:intron |
| ACCCCAATCCACATTCCAAG+TGG | 0.654914 | 4_1:-63365404 | None:intergenic |
| GCGGAACCAATCATGACTCG+CGG | 0.676119 | 4_1:+63366286 | Msa0563070:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 4_1:+63365754 | Msa0563070:CDS |
| TGTCACGTTCCAAATTGCGG+CGG | 0.703136 | 4_1:+63366267 | Msa0563070:CDS |
| TGAGTTATTAGATGACAAGG+AGG | 0.722551 | 4_1:+63364986 | Msa0563070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAACTATTTGATTTTA+TGG | + | chr4_1:63366416-63366435 | Msa0563070:intron | 10.0% |
| !!! | TTATTAACTATTTGATTTTA+TGG | + | chr4_1:63366416-63366435 | Msa0563070:intron | 10.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | - | chr4_1:63364706-63364725 | None:intergenic | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | + | chr4_1:63366113-63366132 | Msa0563070:CDS | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | - | chr4_1:63366318-63366337 | None:intergenic | 15.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | - | chr4_1:63364706-63364725 | None:intergenic | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | + | chr4_1:63366113-63366132 | Msa0563070:CDS | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | - | chr4_1:63366318-63366337 | None:intergenic | 15.0% |
| !! | TTAAAAATTTGTCCTTCAAA+AGG | - | chr4_1:63364669-63364688 | None:intergenic | 20.0% |
| !! | ATATTATTGTTATCAAAAGC+AGG | + | chr4_1:63365059-63365078 | Msa0563070:CDS | 20.0% |
| !! | TTAAAAATTTGTCCTTCAAA+AGG | - | chr4_1:63364669-63364688 | None:intergenic | 20.0% |
| !! | ATATTATTGTTATCAAAAGC+AGG | + | chr4_1:63365059-63365078 | Msa0563070:CDS | 20.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | + | chr4_1:63364520-63364539 | Msa0563070:CDS | 25.0% |
| ! | ACATATGAAGATGATGAATA+TGG | + | chr4_1:63364573-63364592 | Msa0563070:CDS | 25.0% |
| ! | AATGTATTTGCACGAAAAAA+TGG | + | chr4_1:63364717-63364736 | Msa0563070:CDS | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | + | chr4_1:63364730-63364749 | Msa0563070:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | + | chr4_1:63364862-63364881 | Msa0563070:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | + | chr4_1:63364868-63364887 | Msa0563070:CDS | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | + | chr4_1:63365116-63365135 | Msa0563070:CDS | 25.0% |
| !! | AATTTTATTCAATCACACAG+TGG | + | chr4_1:63365170-63365189 | Msa0563070:CDS | 25.0% |
| ! | ATGTAAAAGTCTGAAAGATA+TGG | + | chr4_1:63365232-63365251 | Msa0563070:CDS | 25.0% |
| ! | ACAAACTAGAGCATATTATT+TGG | + | chr4_1:63365294-63365313 | Msa0563070:CDS | 25.0% |
| ! | CAAACTAGAGCATATTATTT+GGG | + | chr4_1:63365295-63365314 | Msa0563070:CDS | 25.0% |
| !! | CATGGAAATTCAATTTTCTT+TGG | + | chr4_1:63365434-63365453 | Msa0563070:intron | 25.0% |
| !! | TACATGATAATTTTGTGAGT+AGG | + | chr4_1:63365522-63365541 | Msa0563070:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | + | chr4_1:63365602-63365621 | Msa0563070:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | - | chr4_1:63365609-63365628 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | + | chr4_1:63365823-63365842 | Msa0563070:CDS | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | - | chr4_1:63365903-63365922 | None:intergenic | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | + | chr4_1:63366028-63366047 | Msa0563070:CDS | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | + | chr4_1:63366029-63366048 | Msa0563070:CDS | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | - | chr4_1:63366159-63366178 | None:intergenic | 25.0% |
| ! | ACAATCAGAACTTACTTATT+AGG | - | chr4_1:63366360-63366379 | None:intergenic | 25.0% |
| !!! | CTATTTGATTTTATGGTTCT+TGG | + | chr4_1:63366423-63366442 | Msa0563070:intron | 25.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | + | chr4_1:63364520-63364539 | Msa0563070:CDS | 25.0% |
| ! | ACATATGAAGATGATGAATA+TGG | + | chr4_1:63364573-63364592 | Msa0563070:CDS | 25.0% |
| ! | AATGTATTTGCACGAAAAAA+TGG | + | chr4_1:63364717-63364736 | Msa0563070:CDS | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | + | chr4_1:63364730-63364749 | Msa0563070:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | + | chr4_1:63364862-63364881 | Msa0563070:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | + | chr4_1:63364868-63364887 | Msa0563070:CDS | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | + | chr4_1:63365116-63365135 | Msa0563070:CDS | 25.0% |
| !! | AATTTTATTCAATCACACAG+TGG | + | chr4_1:63365170-63365189 | Msa0563070:CDS | 25.0% |
| ! | ATGTAAAAGTCTGAAAGATA+TGG | + | chr4_1:63365232-63365251 | Msa0563070:CDS | 25.0% |
| ! | ACAAACTAGAGCATATTATT+TGG | + | chr4_1:63365294-63365313 | Msa0563070:CDS | 25.0% |
| ! | CAAACTAGAGCATATTATTT+GGG | + | chr4_1:63365295-63365314 | Msa0563070:CDS | 25.0% |
| !! | CATGGAAATTCAATTTTCTT+TGG | + | chr4_1:63365434-63365453 | Msa0563070:intron | 25.0% |
| !! | TACATGATAATTTTGTGAGT+AGG | + | chr4_1:63365522-63365541 | Msa0563070:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | + | chr4_1:63365602-63365621 | Msa0563070:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | - | chr4_1:63365609-63365628 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | + | chr4_1:63365823-63365842 | Msa0563070:CDS | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | - | chr4_1:63365903-63365922 | None:intergenic | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | + | chr4_1:63366028-63366047 | Msa0563070:CDS | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | + | chr4_1:63366029-63366048 | Msa0563070:CDS | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | - | chr4_1:63366159-63366178 | None:intergenic | 25.0% |
| ! | ACAATCAGAACTTACTTATT+AGG | - | chr4_1:63366360-63366379 | None:intergenic | 25.0% |
| !!! | CTATTTGATTTTATGGTTCT+TGG | + | chr4_1:63366423-63366442 | Msa0563070:intron | 25.0% |
| ! | AACTAGTACTGTTGATGAAT+GGG | + | chr4_1:63364641-63364660 | Msa0563070:CDS | 30.0% |
| ! | TCTCTTTTATAAACTCCTGA+TGG | - | chr4_1:63364801-63364820 | None:intergenic | 30.0% |
| !! | TAAAGGCTTTGAAGGAAAAT+GGG | + | chr4_1:63364932-63364951 | Msa0563070:CDS | 30.0% |
| !! | TACGATTTTGATCGTCAATT+GGG | - | chr4_1:63365040-63365059 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | - | chr4_1:63365041-63365060 | None:intergenic | 30.0% |
| ! | ATTCGAGCATATGAATCTTT+TGG | + | chr4_1:63365332-63365351 | Msa0563070:CDS | 30.0% |
| !!! | ATATGAATCTTTTGGTGATG+TGG | + | chr4_1:63365340-63365359 | Msa0563070:CDS | 30.0% |
| AGAAGAAATCTTCATTCAGA+TGG | + | chr4_1:63365477-63365496 | Msa0563070:intron | 30.0% | |
| GAAGAAATCTTCATTCAGAT+GGG | + | chr4_1:63365478-63365497 | Msa0563070:intron | 30.0% | |
| ! | TGATAATTTTGTGAGTAGGT+TGG | + | chr4_1:63365526-63365545 | Msa0563070:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | - | chr4_1:63365690-63365709 | None:intergenic | 30.0% | |
| ATAATTGTTACCTGTCTGAA+TGG | - | chr4_1:63365725-63365744 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr4_1:63365904-63365923 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr4_1:63365905-63365924 | Msa0563070:CDS | 30.0% |
| CACATAGTCAAATGCAATAA+TGG | + | chr4_1:63365961-63365980 | Msa0563070:CDS | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | - | chr4_1:63366108-63366127 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | - | chr4_1:63366151-63366170 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | + | chr4_1:63366190-63366209 | Msa0563070:CDS | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | - | chr4_1:63366348-63366367 | None:intergenic | 30.0% | |
| ! | TGATTTTATGGTTCTTGGAT+AGG | + | chr4_1:63366428-63366447 | Msa0563070:intron | 30.0% |
| ! | AACTAGTACTGTTGATGAAT+GGG | + | chr4_1:63364641-63364660 | Msa0563070:CDS | 30.0% |
| ! | TCTCTTTTATAAACTCCTGA+TGG | - | chr4_1:63364801-63364820 | None:intergenic | 30.0% |
| !! | TAAAGGCTTTGAAGGAAAAT+GGG | + | chr4_1:63364932-63364951 | Msa0563070:CDS | 30.0% |
| !! | TACGATTTTGATCGTCAATT+GGG | - | chr4_1:63365040-63365059 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | - | chr4_1:63365041-63365060 | None:intergenic | 30.0% |
| ! | ATTCGAGCATATGAATCTTT+TGG | + | chr4_1:63365332-63365351 | Msa0563070:CDS | 30.0% |
| !!! | ATATGAATCTTTTGGTGATG+TGG | + | chr4_1:63365340-63365359 | Msa0563070:CDS | 30.0% |
| AGAAGAAATCTTCATTCAGA+TGG | + | chr4_1:63365477-63365496 | Msa0563070:intron | 30.0% | |
| GAAGAAATCTTCATTCAGAT+GGG | + | chr4_1:63365478-63365497 | Msa0563070:intron | 30.0% | |
| ! | TGATAATTTTGTGAGTAGGT+TGG | + | chr4_1:63365526-63365545 | Msa0563070:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | - | chr4_1:63365690-63365709 | None:intergenic | 30.0% | |
| ATAATTGTTACCTGTCTGAA+TGG | - | chr4_1:63365725-63365744 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr4_1:63365904-63365923 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr4_1:63365905-63365924 | Msa0563070:CDS | 30.0% |
| CACATAGTCAAATGCAATAA+TGG | + | chr4_1:63365961-63365980 | Msa0563070:CDS | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | - | chr4_1:63366108-63366127 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | - | chr4_1:63366151-63366170 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | + | chr4_1:63366190-63366209 | Msa0563070:CDS | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | - | chr4_1:63366348-63366367 | None:intergenic | 30.0% | |
| ! | TGATTTTATGGTTCTTGGAT+AGG | + | chr4_1:63366428-63366447 | Msa0563070:intron | 30.0% |
| ! | GAACTAGTACTGTTGATGAA+TGG | + | chr4_1:63364640-63364659 | Msa0563070:CDS | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | + | chr4_1:63364880-63364899 | Msa0563070:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | + | chr4_1:63364915-63364934 | Msa0563070:CDS | 35.0% |
| ! | TTGGTTTCTAAAGGCTTTGA+AGG | + | chr4_1:63364924-63364943 | Msa0563070:CDS | 35.0% |
| !! | CTAAAGGCTTTGAAGGAAAA+TGG | + | chr4_1:63364931-63364950 | Msa0563070:CDS | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | - | chr4_1:63364980-63364999 | None:intergenic | 35.0% | |
| CCTTGTCATCTAATAACTCA+TGG | - | chr4_1:63364986-63365005 | None:intergenic | 35.0% | |
| CCATGAGTTATTAGATGACA+AGG | + | chr4_1:63364983-63365002 | Msa0563070:CDS | 35.0% | |
| TGAGTTATTAGATGACAAGG+AGG | + | chr4_1:63364986-63365005 | Msa0563070:CDS | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | - | chr4_1:63365024-63365043 | None:intergenic | 35.0% | |
| TACAGGTAACTTACCATTTC+TGG | + | chr4_1:63365133-63365152 | Msa0563070:CDS | 35.0% | |
| ! | TAACTTACCATTTCTGGAGA+AGG | + | chr4_1:63365139-63365158 | Msa0563070:CDS | 35.0% |
| CTAATATCCTTCTCCAGAAA+TGG | - | chr4_1:63365149-63365168 | None:intergenic | 35.0% | |
| GAGCATATTATTTGGGCATT+TGG | + | chr4_1:63365302-63365321 | Msa0563070:CDS | 35.0% | |
| TTCCAAGTGGCATATCATAA+CGG | - | chr4_1:63365394-63365413 | None:intergenic | 35.0% | |
| ! | TTCATTCAGATGGGCTTTAA+AGG | + | chr4_1:63365487-63365506 | Msa0563070:intron | 35.0% |
| GTCAAAATTAGACATCAAGC+AGG | + | chr4_1:63365556-63365575 | Msa0563070:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | + | chr4_1:63365621-63365640 | Msa0563070:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | - | chr4_1:63365670-63365689 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | - | chr4_1:63365866-63365885 | None:intergenic | 35.0% |
| ! | TGACTATGTGACTGCATTTT+GGG | - | chr4_1:63365951-63365970 | None:intergenic | 35.0% |
| ! | TTGACTATGTGACTGCATTT+TGG | - | chr4_1:63365952-63365971 | None:intergenic | 35.0% |
| TCAGTCTCTAATTCGATGTT+TGG | + | chr4_1:63365999-63366018 | Msa0563070:CDS | 35.0% | |
| AAATTCCTCCGACAGATAAA+AGG | + | chr4_1:63366078-63366097 | Msa0563070:CDS | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | - | chr4_1:63366150-63366169 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | - | chr4_1:63366189-63366208 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | + | chr4_1:63366186-63366205 | Msa0563070:CDS | 35.0% |
| TTCTTGGATAGGATCACAAA+GGG | + | chr4_1:63366439-63366458 | Msa0563070:intron | 35.0% | |
| ! | GAACTAGTACTGTTGATGAA+TGG | + | chr4_1:63364640-63364659 | Msa0563070:CDS | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | + | chr4_1:63364880-63364899 | Msa0563070:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | + | chr4_1:63364915-63364934 | Msa0563070:CDS | 35.0% |
| ! | TTGGTTTCTAAAGGCTTTGA+AGG | + | chr4_1:63364924-63364943 | Msa0563070:CDS | 35.0% |
| !! | CTAAAGGCTTTGAAGGAAAA+TGG | + | chr4_1:63364931-63364950 | Msa0563070:CDS | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | - | chr4_1:63364980-63364999 | None:intergenic | 35.0% | |
| CCTTGTCATCTAATAACTCA+TGG | - | chr4_1:63364986-63365005 | None:intergenic | 35.0% | |
| CCATGAGTTATTAGATGACA+AGG | + | chr4_1:63364983-63365002 | Msa0563070:CDS | 35.0% | |
| TGAGTTATTAGATGACAAGG+AGG | + | chr4_1:63364986-63365005 | Msa0563070:CDS | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | - | chr4_1:63365024-63365043 | None:intergenic | 35.0% | |
| TACAGGTAACTTACCATTTC+TGG | + | chr4_1:63365133-63365152 | Msa0563070:CDS | 35.0% | |
| ! | TAACTTACCATTTCTGGAGA+AGG | + | chr4_1:63365139-63365158 | Msa0563070:CDS | 35.0% |
| CTAATATCCTTCTCCAGAAA+TGG | - | chr4_1:63365149-63365168 | None:intergenic | 35.0% | |
| GAGCATATTATTTGGGCATT+TGG | + | chr4_1:63365302-63365321 | Msa0563070:CDS | 35.0% | |
| TTCCAAGTGGCATATCATAA+CGG | - | chr4_1:63365394-63365413 | None:intergenic | 35.0% | |
| ! | TTCATTCAGATGGGCTTTAA+AGG | + | chr4_1:63365487-63365506 | Msa0563070:intron | 35.0% |
| GTCAAAATTAGACATCAAGC+AGG | + | chr4_1:63365556-63365575 | Msa0563070:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | + | chr4_1:63365621-63365640 | Msa0563070:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | - | chr4_1:63365670-63365689 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | - | chr4_1:63365866-63365885 | None:intergenic | 35.0% |
| ! | TGACTATGTGACTGCATTTT+GGG | - | chr4_1:63365951-63365970 | None:intergenic | 35.0% |
| ! | TTGACTATGTGACTGCATTT+TGG | - | chr4_1:63365952-63365971 | None:intergenic | 35.0% |
| TCAGTCTCTAATTCGATGTT+TGG | + | chr4_1:63365999-63366018 | Msa0563070:CDS | 35.0% | |
| AAATTCCTCCGACAGATAAA+AGG | + | chr4_1:63366078-63366097 | Msa0563070:CDS | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | - | chr4_1:63366150-63366169 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | - | chr4_1:63366189-63366208 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | + | chr4_1:63366186-63366205 | Msa0563070:CDS | 35.0% |
| TTCTTGGATAGGATCACAAA+GGG | + | chr4_1:63366439-63366458 | Msa0563070:intron | 35.0% | |
| TCATCAACAGTACTAGTTCC+AGG | - | chr4_1:63364639-63364658 | None:intergenic | 40.0% | |
| !! | GATGAATGGGTTCCTTTTGA+AGG | + | chr4_1:63364654-63364673 | Msa0563070:CDS | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | + | chr4_1:63364783-63364802 | Msa0563070:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | + | chr4_1:63364819-63364838 | Msa0563070:CDS | 40.0% |
| TAGTTGTAGCGCAAAGTTGT+TGG | + | chr4_1:63364905-63364924 | Msa0563070:CDS | 40.0% | |
| ATTGGGATGTTACGATAAGC+GGG | - | chr4_1:63365023-63365042 | None:intergenic | 40.0% | |
| CTCTGTGAGTCTCATAATGA+GGG | + | chr4_1:63365085-63365104 | Msa0563070:CDS | 40.0% | |
| AACCGTTATGATATGCCACT+TGG | + | chr4_1:63365389-63365408 | Msa0563070:CDS | 40.0% | |
| ! | ATGATATGCCACTTGGAATG+TGG | + | chr4_1:63365396-63365415 | Msa0563070:CDS | 40.0% |
| !! | TGGATTGGGGTTGATAATCA+TGG | + | chr4_1:63365416-63365435 | Msa0563070:intron | 40.0% |
| TTTGCAGCATGTTCCTCAAT+AGG | - | chr4_1:63365637-63365656 | None:intergenic | 40.0% | |
| AAATATGCTGCCATTCAGAC+AGG | + | chr4_1:63365712-63365731 | Msa0563070:CDS | 40.0% | |
| CGACATCATACCAAAGTTGA+TGG | + | chr4_1:63365751-63365770 | Msa0563070:CDS | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr4_1:63365754-63365773 | Msa0563070:CDS | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | - | chr4_1:63365919-63365938 | None:intergenic | 40.0% | |
| ! | TTTGGAACATCGGGTACATT+GGG | - | chr4_1:63366141-63366160 | None:intergenic | 40.0% |
| ! | ATTTGGAACATCGGGTACAT+TGG | - | chr4_1:63366142-63366161 | None:intergenic | 40.0% |
| CCCGATGTTCCAAATAATGA+TGG | + | chr4_1:63366147-63366166 | Msa0563070:CDS | 40.0% | |
| GTTCTTGGATAGGATCACAA+AGG | + | chr4_1:63366438-63366457 | Msa0563070:intron | 40.0% | |
| TCATCAACAGTACTAGTTCC+AGG | - | chr4_1:63364639-63364658 | None:intergenic | 40.0% | |
| !! | GATGAATGGGTTCCTTTTGA+AGG | + | chr4_1:63364654-63364673 | Msa0563070:CDS | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | + | chr4_1:63364783-63364802 | Msa0563070:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | + | chr4_1:63364819-63364838 | Msa0563070:CDS | 40.0% |
| TAGTTGTAGCGCAAAGTTGT+TGG | + | chr4_1:63364905-63364924 | Msa0563070:CDS | 40.0% | |
| ATTGGGATGTTACGATAAGC+GGG | - | chr4_1:63365023-63365042 | None:intergenic | 40.0% | |
| CTCTGTGAGTCTCATAATGA+GGG | + | chr4_1:63365085-63365104 | Msa0563070:CDS | 40.0% | |
| AACCGTTATGATATGCCACT+TGG | + | chr4_1:63365389-63365408 | Msa0563070:CDS | 40.0% | |
| ! | ATGATATGCCACTTGGAATG+TGG | + | chr4_1:63365396-63365415 | Msa0563070:CDS | 40.0% |
| !! | TGGATTGGGGTTGATAATCA+TGG | + | chr4_1:63365416-63365435 | Msa0563070:intron | 40.0% |
| TTTGCAGCATGTTCCTCAAT+AGG | - | chr4_1:63365637-63365656 | None:intergenic | 40.0% | |
| AAATATGCTGCCATTCAGAC+AGG | + | chr4_1:63365712-63365731 | Msa0563070:CDS | 40.0% | |
| CGACATCATACCAAAGTTGA+TGG | + | chr4_1:63365751-63365770 | Msa0563070:CDS | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr4_1:63365754-63365773 | Msa0563070:CDS | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | - | chr4_1:63365919-63365938 | None:intergenic | 40.0% | |
| ! | TTTGGAACATCGGGTACATT+GGG | - | chr4_1:63366141-63366160 | None:intergenic | 40.0% |
| ! | ATTTGGAACATCGGGTACAT+TGG | - | chr4_1:63366142-63366161 | None:intergenic | 40.0% |
| CCCGATGTTCCAAATAATGA+TGG | + | chr4_1:63366147-63366166 | Msa0563070:CDS | 40.0% | |
| GTTCTTGGATAGGATCACAA+AGG | + | chr4_1:63366438-63366457 | Msa0563070:intron | 40.0% | |
| !! | AGGCTTTGAAGGAAAATGGG+TGG | + | chr4_1:63364935-63364954 | Msa0563070:CDS | 45.0% |
| GCTCTGTGAGTCTCATAATG+AGG | + | chr4_1:63365084-63365103 | Msa0563070:CDS | 45.0% | |
| ! | ATGCCACTTGGAATGTGGAT+TGG | + | chr4_1:63365401-63365420 | Msa0563070:CDS | 45.0% |
| ! | TGCCACTTGGAATGTGGATT+GGG | + | chr4_1:63365402-63365421 | Msa0563070:CDS | 45.0% |
| TAGACATCAAGCAGGAGAAG+AGG | + | chr4_1:63365564-63365583 | Msa0563070:CDS | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | - | chr4_1:63365764-63365783 | None:intergenic | 45.0% | |
| ! | CAGGCATGCCTTTTATCTGT+CGG | - | chr4_1:63366089-63366108 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | + | chr4_1:63366198-63366217 | Msa0563070:CDS | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | - | chr4_1:63366216-63366235 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | + | chr4_1:63366213-63366232 | Msa0563070:CDS | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | + | chr4_1:63366216-63366235 | Msa0563070:CDS | 45.0% | |
| CGTTGTCACGTTCCAAATTG+CGG | + | chr4_1:63366264-63366283 | Msa0563070:CDS | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | - | chr4_1:63366295-63366314 | None:intergenic | 45.0% | |
| TGGATAGGATCACAAAGGGT+TGG | + | chr4_1:63366443-63366462 | Msa0563070:intron | 45.0% | |
| !! | AGGCTTTGAAGGAAAATGGG+TGG | + | chr4_1:63364935-63364954 | Msa0563070:CDS | 45.0% |
| GCTCTGTGAGTCTCATAATG+AGG | + | chr4_1:63365084-63365103 | Msa0563070:CDS | 45.0% | |
| ! | ATGCCACTTGGAATGTGGAT+TGG | + | chr4_1:63365401-63365420 | Msa0563070:CDS | 45.0% |
| ! | TGCCACTTGGAATGTGGATT+GGG | + | chr4_1:63365402-63365421 | Msa0563070:CDS | 45.0% |
| TAGACATCAAGCAGGAGAAG+AGG | + | chr4_1:63365564-63365583 | Msa0563070:CDS | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | - | chr4_1:63365764-63365783 | None:intergenic | 45.0% | |
| ! | CAGGCATGCCTTTTATCTGT+CGG | - | chr4_1:63366089-63366108 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | + | chr4_1:63366198-63366217 | Msa0563070:CDS | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | - | chr4_1:63366216-63366235 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | + | chr4_1:63366213-63366232 | Msa0563070:CDS | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | + | chr4_1:63366216-63366235 | Msa0563070:CDS | 45.0% | |
| CGTTGTCACGTTCCAAATTG+CGG | + | chr4_1:63366264-63366283 | Msa0563070:CDS | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | - | chr4_1:63366295-63366314 | None:intergenic | 45.0% | |
| TGGATAGGATCACAAAGGGT+TGG | + | chr4_1:63366443-63366462 | Msa0563070:intron | 45.0% | |
| TAGTTCCAGGCTGAGGTTCT+TGG | - | chr4_1:63364626-63364645 | None:intergenic | 50.0% | |
| ACAGTACTAGTTCCAGGCTG+AGG | - | chr4_1:63364633-63364652 | None:intergenic | 50.0% | |
| ! | GCCACTTGGAATGTGGATTG+GGG | + | chr4_1:63365403-63365422 | Msa0563070:CDS | 50.0% |
| ACCCCAATCCACATTCCAAG+TGG | - | chr4_1:63365407-63365426 | None:intergenic | 50.0% | |
| ATGGTGGTCGTCTAGTAAGC+TGG | + | chr4_1:63365770-63365789 | Msa0563070:CDS | 50.0% | |
| ! | GCATGCCTTTTATCTGTCGG+AGG | - | chr4_1:63366086-63366105 | None:intergenic | 50.0% |
| ! | TGAACCTTTTGGCCGACCTT+TGG | - | chr4_1:63366205-63366224 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | + | chr4_1:63366205-63366224 | Msa0563070:CDS | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | - | chr4_1:63366231-63366250 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | - | chr4_1:63366253-63366272 | None:intergenic | 50.0% | |
| TGTCACGTTCCAAATTGCGG+CGG | + | chr4_1:63366267-63366286 | Msa0563070:CDS | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+TGG | - | chr4_1:63366279-63366298 | None:intergenic | 50.0% |
| TAGTTCCAGGCTGAGGTTCT+TGG | - | chr4_1:63364626-63364645 | None:intergenic | 50.0% | |
| ACAGTACTAGTTCCAGGCTG+AGG | - | chr4_1:63364633-63364652 | None:intergenic | 50.0% | |
| ! | GCCACTTGGAATGTGGATTG+GGG | + | chr4_1:63365403-63365422 | Msa0563070:CDS | 50.0% |
| ACCCCAATCCACATTCCAAG+TGG | - | chr4_1:63365407-63365426 | None:intergenic | 50.0% | |
| ATGGTGGTCGTCTAGTAAGC+TGG | + | chr4_1:63365770-63365789 | Msa0563070:CDS | 50.0% | |
| ! | GCATGCCTTTTATCTGTCGG+AGG | - | chr4_1:63366086-63366105 | None:intergenic | 50.0% |
| ! | TGAACCTTTTGGCCGACCTT+TGG | - | chr4_1:63366205-63366224 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | + | chr4_1:63366205-63366224 | Msa0563070:CDS | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | - | chr4_1:63366231-63366250 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | - | chr4_1:63366253-63366272 | None:intergenic | 50.0% | |
| TGTCACGTTCCAAATTGCGG+CGG | + | chr4_1:63366267-63366286 | Msa0563070:CDS | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+TGG | - | chr4_1:63366279-63366298 | None:intergenic | 50.0% |
| GCGGAACCAATCATGACTCG+CGG | + | chr4_1:63366286-63366305 | Msa0563070:CDS | 55.0% | |
| GCGGAACCAATCATGACTCG+CGG | + | chr4_1:63366286-63366305 | Msa0563070:CDS | 55.0% | |
| CCAGGCTGAGGTTCTTGGTG+TGG | - | chr4_1:63364621-63364640 | None:intergenic | 60.0% | |
| CCACACCAAGAACCTCAGCC+TGG | + | chr4_1:63364618-63364637 | Msa0563070:CDS | 60.0% | |
| CCAGGCTGAGGTTCTTGGTG+TGG | - | chr4_1:63364621-63364640 | None:intergenic | 60.0% | |
| CCACACCAAGAACCTCAGCC+TGG | + | chr4_1:63364618-63364637 | Msa0563070:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 63364507 | 63366492 | 63364507 | ID=Msa0563070;Name=Msa0563070 |
| chr4_1 | mRNA | 63364507 | 63366492 | 63364507 | ID=Msa0563070-mRNA-1;Parent=Msa0563070;Name=Msa0563070-mRNA-1;_AED=0.15;_eAED=0.17;_QI=0|0|0|0.66|1|1|3|0|593 |
| chr4_1 | exon | 63364507 | 63365424 | 63364507 | ID=Msa0563070-mRNA-1:exon:20077;Parent=Msa0563070-mRNA-1 |
| chr4_1 | exon | 63365544 | 63366364 | 63365544 | ID=Msa0563070-mRNA-1:exon:20078;Parent=Msa0563070-mRNA-1 |
| chr4_1 | exon | 63366450 | 63366492 | 63366450 | ID=Msa0563070-mRNA-1:exon:20079;Parent=Msa0563070-mRNA-1 |
| chr4_1 | CDS | 63364507 | 63365424 | 63364507 | ID=Msa0563070-mRNA-1:cds;Parent=Msa0563070-mRNA-1 |
| chr4_1 | CDS | 63365544 | 63366364 | 63365544 | ID=Msa0563070-mRNA-1:cds;Parent=Msa0563070-mRNA-1 |
| chr4_1 | CDS | 63366450 | 63366492 | 63366450 | ID=Msa0563070-mRNA-1:cds;Parent=Msa0563070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
