AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0563610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563610 MtrunA17_Chr8g0377421 92.279 272 19 1 341 612 1 270 1.20e-179 514
Msa0563610 MtrunA17_Chr8g0377421 66.426 277 69 5 1 274 1 256 3.38e-113 344
Msa0563610 MtrunA17_Chr8g0377431 91.262 206 18 0 1 206 1 206 1.00e-116 349
Msa0563610 MtrunA17_Chr8g0377431 63.462 208 51 4 341 527 1 204 1.78e-75 242
Msa0563610 MtrunA17_Chr3g0122411 45.434 438 167 7 341 716 1 428 2.32e-103 323
Msa0563610 MtrunA17_Chr3g0122411 46.174 379 150 8 1 329 1 375 9.30e-85 274
Msa0563610 MtrunA17_Chr8g0377401 59.690 258 40 3 341 552 1 240 2.00e-88 278
Msa0563610 MtrunA17_Chr8g0377401 61.111 252 55 5 1 225 1 236 7.87e-78 250
Msa0563610 MtrunA17_Chr8g0377411 89.691 97 10 0 617 713 1 97 2.63e-53 179
Msa0563610 MtrunA17_Chr8g0377411 78.261 46 10 0 285 330 1 46 1.62e-15 72.8
Msa0563610 MtrunA17_Chr8g0377391 51.190 168 40 1 571 696 1 168 2.25e-43 154
Msa0563610 MtrunA17_Chr8g0377391 39.259 135 32 2 247 331 1 135 2.22e-16 77.4
Msa0563610 MtrunA17_Chr7g0258471 36.066 244 127 6 425 646 91 327 1.88e-32 130
Msa0563610 MtrunA17_Chr7g0258471 40.201 199 85 6 144 314 135 327 9.06e-31 125
Msa0563610 MtrunA17_Chr3g0132091 52.252 111 52 1 151 261 73 182 8.43e-31 124
Msa0563610 MtrunA17_Chr3g0132091 44.094 127 69 1 459 585 58 182 1.72e-27 114
Msa0563610 MtrunA17_Chr8g0360361 66.250 80 27 0 149 228 63 142 1.82e-30 118
Msa0563610 MtrunA17_Chr8g0360361 63.158 76 28 0 471 546 62 137 1.14e-28 113
Msa0563610 MtrunA17_Chr8g0386271 39.796 196 100 6 137 328 85 266 1.88e-29 121
Msa0563610 MtrunA17_Chr8g0386271 47.368 114 57 1 474 587 99 209 1.30e-24 106
Msa0563610 MtrunA17_Chr7g0231911 43.537 147 71 3 400 546 87 221 5.53e-29 118
Msa0563610 MtrunA17_Chr7g0231911 46.405 153 70 4 99 242 98 247 1.47e-28 116
Msa0563610 MtrunA17_Chr4g0046991 67.105 76 25 0 471 546 70 145 1.22e-28 112
Msa0563610 MtrunA17_Chr4g0046991 63.158 76 28 0 149 224 71 146 1.63e-26 105
Msa0563610 MtrunA17_Chr4g0061651 40.000 185 85 6 151 328 123 288 9.10e-28 117
Msa0563610 MtrunA17_Chr4g0061651 56.977 86 35 1 474 559 123 206 3.63e-26 112
Msa0563610 MtrunA17_Chr5g0420051 56.977 86 37 0 149 234 179 264 6.91e-27 114
Msa0563610 MtrunA17_Chr5g0420051 42.400 125 71 1 422 546 130 253 1.89e-26 113
Msa0563610 MtrunA17_Chr8g0334671 47.200 125 53 2 423 546 147 259 6.95e-27 112
Msa0563610 MtrunA17_Chr8g0334671 64.103 78 28 0 149 226 185 262 1.72e-26 110
Msa0563610 MtrunA17_Chr7g0224821 58.750 80 33 0 151 230 77 156 1.26e-26 112
Msa0563610 MtrunA17_Chr7g0224821 57.534 73 31 0 474 546 77 149 6.25e-24 104
Msa0563610 MtrunA17_Chr2g0308321 55.556 90 40 0 137 226 157 246 2.27e-26 114
Msa0563610 MtrunA17_Chr2g0308321 61.644 73 28 0 474 546 171 243 9.85e-25 108
Msa0563610 MtrunA17_Chr1g0162871 57.831 83 35 0 148 230 101 183 3.18e-25 112
Msa0563610 MtrunA17_Chr1g0162871 52.273 88 42 0 459 546 89 176 1.58e-22 103
Msa0563610 MtrunA17_Chr2g0282521 57.895 76 32 0 471 546 61 136 6.48e-25 101
Msa0563610 MtrunA17_Chr2g0282521 56.250 80 35 0 149 228 62 141 7.94e-25 100
Msa0563610 MtrunA17_Chr1g0194121 53.684 95 44 0 136 230 132 226 4.57e-24 108
Msa0563610 MtrunA17_Chr1g0194121 56.250 80 35 0 474 553 147 226 1.83e-22 103
Msa0563610 MtrunA17_Chr2g0302791 58.974 78 32 0 151 228 139 216 3.52e-23 105
Msa0563610 MtrunA17_Chr2g0302791 57.895 76 32 0 474 549 139 214 4.21e-22 102
Msa0563610 MtrunA17_Chr7g0270541 55.294 85 38 0 151 235 145 229 2.58e-22 102
Msa0563610 MtrunA17_Chr7g0270541 49.000 100 51 0 459 558 130 229 6.28e-22 101
Msa0563610 MtrunA17_Chr2g0286661 39.716 141 71 2 136 269 88 221 3.06e-22 102
Msa0563610 MtrunA17_Chr2g0286661 36.076 158 91 3 474 624 103 257 2.18e-20 96.3
Msa0563610 MtrunA17_Chr1g0175031 45.283 106 50 2 420 520 18 120 6.85e-20 86.7
Msa0563610 MtrunA17_Chr1g0175031 45.918 98 46 2 105 197 25 120 1.75e-16 76.6
Msa0563610 MtrunA17_Chr2g0317041 51.613 62 30 0 136 197 84 145 3.07e-15 73.9
Msa0563610 MtrunA17_Chr2g0317041 57.143 49 21 0 472 520 97 145 3.45e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0563610 AT5G43270.3 47.154 246 110 8 1 227 1 245 1.00e-44 166
Msa0563610 AT5G43270.3 60.448 134 51 2 414 546 109 241 3.37e-40 153
Msa0563610 AT5G43270.1 47.154 246 110 8 1 227 1 245 1.00e-44 166
Msa0563610 AT5G43270.1 60.448 134 51 2 414 546 109 241 3.37e-40 153
Msa0563610 AT5G43270.2 47.154 246 110 8 1 227 1 245 1.00e-44 166
Msa0563610 AT5G43270.2 60.448 134 51 2 414 546 109 241 3.37e-40 153
Msa0563610 AT1G27360.2 43.426 251 116 8 1 226 1 250 4.23e-44 164
Msa0563610 AT1G27360.2 37.450 251 108 5 341 546 1 247 1.71e-38 147
Msa0563610 AT1G27360.1 43.426 251 116 8 1 226 1 250 4.23e-44 164
Msa0563610 AT1G27360.1 37.450 251 108 5 341 546 1 247 1.71e-38 147
Msa0563610 AT1G27360.3 43.426 251 116 8 1 226 1 250 4.23e-44 164
Msa0563610 AT1G27360.3 37.450 251 108 5 341 546 1 247 1.71e-38 147
Msa0563610 AT1G27360.4 43.426 251 116 8 1 226 1 250 4.23e-44 164
Msa0563610 AT1G27360.4 37.450 251 108 5 341 546 1 247 1.71e-38 147
Msa0563610 AT1G27370.6 40.977 266 130 6 1 240 1 265 2.72e-42 157
Msa0563610 AT1G27370.6 58.779 131 52 2 417 546 119 248 1.61e-41 155
Msa0563610 AT1G27370.1 40.977 266 130 6 1 240 1 265 1.09e-41 157
Msa0563610 AT1G27370.1 58.779 131 52 2 417 546 119 248 3.95e-41 155
Msa0563610 AT1G27370.5 40.977 266 130 6 1 240 1 265 1.09e-41 157
Msa0563610 AT1G27370.5 58.779 131 52 2 417 546 119 248 3.95e-41 155
Msa0563610 AT1G27370.3 40.977 266 130 6 1 240 1 265 1.09e-41 157
Msa0563610 AT1G27370.3 58.779 131 52 2 417 546 119 248 3.95e-41 155
Msa0563610 AT1G27370.2 40.977 266 130 6 1 240 1 265 1.09e-41 157
Msa0563610 AT1G27370.2 58.779 131 52 2 417 546 119 248 3.95e-41 155
Msa0563610 AT1G27370.4 40.977 266 130 6 1 240 1 265 1.09e-41 157
Msa0563610 AT1G27370.4 58.779 131 52 2 417 546 119 248 3.95e-41 155
Msa0563610 AT1G27370.7 40.977 266 130 6 1 240 1 265 1.09e-41 157
Msa0563610 AT1G27370.7 58.779 131 52 2 417 546 119 248 3.95e-41 155
Msa0563610 AT2G42200.1 54.955 111 45 2 148 258 71 176 5.74e-31 125
Msa0563610 AT2G42200.1 31.136 273 133 8 472 709 72 324 1.26e-27 115
Msa0563610 AT1G02065.1 46.565 131 58 2 423 552 147 266 3.94e-28 116
Msa0563610 AT1G02065.1 63.415 82 29 1 146 226 183 264 2.80e-26 110
Msa0563610 AT1G69170.1 56.566 99 40 1 126 224 102 197 4.16e-28 117
Msa0563610 AT1G69170.1 65.333 75 26 0 472 546 122 196 5.98e-28 117
Msa0563610 AT3G57920.1 30.508 295 165 12 425 702 27 298 3.25e-27 114
Msa0563610 AT3G57920.1 40.351 171 85 5 150 304 58 227 5.73e-26 110
Msa0563610 AT5G50570.1 57.143 84 36 0 147 230 97 180 5.75e-27 113
Msa0563610 AT5G50570.1 51.807 83 40 0 464 546 91 173 4.84e-23 102
Msa0563610 AT5G50570.2 57.143 84 36 0 147 230 97 180 5.75e-27 113
Msa0563610 AT5G50570.2 51.807 83 40 0 464 546 91 173 4.84e-23 102
Msa0563610 AT5G50670.1 57.143 84 36 0 147 230 97 180 5.75e-27 113
Msa0563610 AT5G50670.1 51.807 83 40 0 464 546 91 173 4.84e-23 102
Msa0563610 AT5G50670.2 57.143 84 36 0 147 230 97 180 5.75e-27 113
Msa0563610 AT5G50670.2 51.807 83 40 0 464 546 91 173 4.84e-23 102
Msa0563610 AT1G76580.2 55.914 93 41 0 148 240 111 203 1.43e-26 116
Msa0563610 AT1G76580.2 53.933 89 41 0 472 560 112 200 4.76e-23 105
Msa0563610 AT1G76580.3 55.914 93 41 0 148 240 111 203 1.52e-26 116
Msa0563610 AT1G76580.3 53.933 89 41 0 472 560 112 200 4.82e-23 105
Msa0563610 AT2G33810.1 56.667 90 37 1 457 546 39 126 1.75e-26 105
Msa0563610 AT2G33810.1 60.811 74 29 0 151 224 54 127 1.56e-25 102
Msa0563610 AT1G76580.1 55.914 93 41 0 148 240 111 203 2.73e-26 115
Msa0563610 AT1G76580.1 53.933 89 41 0 472 560 112 200 9.51e-23 104
Msa0563610 AT3G60030.1 55.814 86 38 0 151 236 127 212 4.91e-25 111
Msa0563610 AT3G60030.1 58.904 73 30 0 474 546 127 199 1.94e-22 103
Msa0563610 AT1G20980.1 53.465 101 46 1 137 236 106 206 7.58e-25 111
Msa0563610 AT1G20980.1 58.667 75 31 0 472 546 118 192 9.10e-22 101
Msa0563610 AT1G53160.3 61.644 73 28 0 474 546 54 126 1.19e-24 101
Msa0563610 AT1G53160.3 56.962 79 34 0 151 229 54 132 6.34e-24 99.8
Msa0563610 AT1G53160.2 61.644 73 28 0 474 546 54 126 1.37e-24 101
Msa0563610 AT1G53160.2 56.962 79 34 0 151 229 54 132 8.02e-24 99.4
Msa0563610 AT1G53160.1 61.644 73 28 0 474 546 54 126 1.37e-24 101
Msa0563610 AT1G53160.1 56.962 79 34 0 151 229 54 132 8.02e-24 99.4
Msa0563610 AT2G47070.1 61.538 78 30 0 151 228 106 183 5.77e-24 108
Msa0563610 AT2G47070.1 60.274 73 29 0 474 546 106 178 2.65e-22 103
Msa0563610 AT3G15270.1 57.534 73 31 0 474 546 63 135 1.30e-23 99.0
Msa0563610 AT3G15270.1 56.757 74 32 0 151 224 63 136 6.62e-23 97.1
Msa0563610 AT5G18830.2 53.333 75 35 0 150 224 137 211 2.67e-19 93.2
Msa0563610 AT5G18830.2 42.727 110 53 2 437 546 111 210 7.08e-18 88.6
Msa0563610 AT5G18830.3 53.333 75 35 0 150 224 137 211 2.80e-19 93.2
Msa0563610 AT5G18830.3 42.727 110 53 2 437 546 111 210 8.22e-18 88.6
Msa0563610 AT5G18830.1 53.333 75 35 0 150 224 137 211 2.90e-19 93.2
Msa0563610 AT5G18830.1 42.727 110 53 2 437 546 111 210 8.29e-18 88.6
Msa0563610 AT1G02065.2 44.000 100 44 2 423 521 147 235 1.15e-17 83.6
Msa0563610 AT1G02065.2 58.929 56 23 0 143 198 180 235 6.31e-16 78.6
Msa0563610 AT2G47070.2 60.377 53 21 0 176 228 2 54 8.74e-13 72.4
Msa0563610 AT2G47070.2 58.333 48 20 0 499 546 2 49 5.90e-11 66.6

Find 124 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTTGGTGGTTGTAATTT+TGG 0.078496 4_1:+64047060 None:intergenic
CAGCTTGGTGGTTGTAATTT+TGG 0.089177 4_1:+64051890 None:intergenic
CAAATAGTTCATCGTCAAAT+AGG 0.221746 4_1:-64051769 Msa0563610:CDS
CATGATCTGTTTGAGTTTGA+TGG 0.225842 4_1:-64046415 Msa0563610:CDS
CCAAACCTTTCCTGTGTATC+TGG 0.261474 4_1:-64046934 Msa0563610:CDS
CTTGACCGAGAAATCAATTT+CGG 0.268342 4_1:-64047027 Msa0563610:CDS
TGACTTGATTGGAGTGCTTC+AGG 0.279073 4_1:+64051112 None:intergenic
TCAATCTAAGACTTGGTAAA+AGG 0.294020 4_1:-64046900 Msa0563610:CDS
CTCCCTCTTCCCAGTGGGAC+TGG 0.294118 4_1:-64051952 Msa0563610:CDS
TTCAGAGAACCTTATGAGTA+TGG 0.299200 4_1:-64044863 Msa0563610:CDS
TCTGGCTCTGAGCTAATTCA+TGG 0.311663 4_1:-64046973 Msa0563610:CDS
AATAACCACCATGGGAGATT+TGG 0.333181 4_1:+64046669 None:intergenic
ATAAAGCTGATTGGCTTGAT+TGG 0.333859 4_1:+64046320 None:intergenic
TATAACCACCATAGGAGATT+TGG 0.339545 4_1:+64051442 None:intergenic
ATTAGAATGTTCTTCAGAAA+TGG 0.343450 4_1:+64045045 None:intergenic
ACAACCACCAAACTGGAGTA+TGG 0.348781 4_1:-64047052 Msa0563610:CDS
CAAAATTACAACCACCAAAC+TGG 0.349918 4_1:-64047059 Msa0563610:CDS
AGCTTTACCTGCCACATTGC+TGG 0.352012 4_1:+64051396 None:intergenic
TCTCCCATGGTGGTTATTGA+TGG 0.353998 4_1:-64046664 Msa0563610:CDS
GCAGTCTTGGAATTAGAAAA+TGG 0.356442 4_1:+64045400 None:intergenic
AGCTTTACCTGCTACATTGC+TGG 0.356873 4_1:+64046623 None:intergenic
CATGGTGGTTATTGATGGTT+TGG 0.360419 4_1:-64046659 Msa0563610:CDS
TTGACCGAGAAATCAATTTC+GGG 0.364920 4_1:-64047026 Msa0563610:CDS
ACAAAACTGATTGACTTGAT+TGG 0.364968 4_1:+64051101 None:intergenic
ATCAGAAAAGCATAGAAATT+AGG 0.376805 4_1:+64047168 None:intergenic
ACAACCCGAAATTGATTTCT+CGG 0.376943 4_1:+64047022 None:intergenic
TTTGCGTCATCTTTAAGTAT+TGG 0.381569 4_1:-64051587 Msa0563610:CDS
TCCCTCTTCCCAGTGGGACT+GGG 0.389604 4_1:-64051951 Msa0563610:CDS
CTGATTCATTGCATGAGTTA+TGG 0.392149 4_1:+64045000 None:intergenic
CCCGGTGGAAGTGGTTCTTC+TGG 0.397175 4_1:-64046991 Msa0563610:CDS
CCAGAGCTTTCTTCTGTCTC+TGG 0.403530 4_1:-64051701 Msa0563610:CDS
TCTCCTATGGTGGTTATAGA+TGG 0.407218 4_1:-64051437 Msa0563610:CDS
ACAACCCGGCATTGATTTCT+CGG 0.409997 4_1:+64051852 None:intergenic
GGCTAAATTTGTAGCAGTCT+TGG 0.413824 4_1:+64045387 None:intergenic
CTTGCAATTTCCGCGCTGCC+AGG 0.416641 4_1:-64051537 Msa0563610:CDS
AAATAGTTCATCGTCAAATA+GGG 0.430475 4_1:-64051768 Msa0563610:CDS
TTCACAGTTGGAGTTGGAAT+GGG 0.437116 4_1:-64047121 Msa0563610:CDS
CGCTGCCAGGTTGAAGGTTG+TGG 0.443635 4_1:-64051524 Msa0563610:CDS
CATCAAACTCAAACAGATCA+TGG 0.444519 4_1:+64046416 None:intergenic
TTTCCGCGCTGCCAGGTTGA+AGG 0.450558 4_1:-64051530 Msa0563610:CDS
CAGCTTGACGATGATATATA+CGG 0.462985 4_1:+64046344 None:intergenic
CTTCACAGTTGGAGTTGGAA+TGG 0.465688 4_1:-64047122 Msa0563610:CDS
CCAGATACACAGGAAAGGTT+TGG 0.468664 4_1:+64046934 None:intergenic
ATTGGTGCTCCCAGTCCCAC+TGG 0.471654 4_1:+64051942 None:intergenic
CCACCACGCTGCCAGGTTGA+AGG 0.471978 4_1:-64046757 Msa0563610:CDS
CGCATATGAATCCCACTGAT+TGG 0.473627 4_1:+64045075 None:intergenic
CTCCCAGTCCCACTGGGAAG+AGG 0.474118 4_1:+64051949 None:intergenic
TCCCTCTTCACAGTTGGAGT+TGG 0.476978 4_1:-64047127 Msa0563610:CDS
TGTTTGATGCTCCAGCTTGG+TGG 0.481479 4_1:+64051878 None:intergenic
CTCTTGCTTCATCAGAGCCA+TGG 0.481784 4_1:-64044970 Msa0563610:CDS
TTTATCATTTGTATCAGAAA+CGG 0.482839 4_1:+64049918 None:intergenic
CAAAATTACAACCACCAAGC+TGG 0.484604 4_1:-64051889 Msa0563610:CDS
TCAAGTTCCATACTCCAGTT+TGG 0.484691 4_1:+64047045 None:intergenic
TATGGTGGTTATAGATGGTA+TGG 0.485704 4_1:-64051432 Msa0563610:CDS
AACATTCATGTTAACCCAGC+TGG 0.488020 4_1:+64044834 None:intergenic
CTCTTCTGTCAACTAATCCA+TGG 0.493619 4_1:-64049873 Msa0563610:CDS
GCAGTCTCTGAATTAGCAAA+TGG 0.494415 4_1:+64050163 None:intergenic
TATGATACACCCGGTGGAAG+TGG 0.496488 4_1:-64047000 Msa0563610:CDS
GTGAATAAGATAAAGCTGAT+TGG 0.502891 4_1:+64046311 None:intergenic
TGGTGAAAACCATACTCATA+AGG 0.504888 4_1:+64044854 None:intergenic
AGTTCCATACTCCAGTTTGG+TGG 0.506654 4_1:+64047048 None:intergenic
TCTTGTTTGATGCTCCAGCT+TGG 0.510678 4_1:+64051875 None:intergenic
ACAATGTCCACCACGCTGCC+AGG 0.516200 4_1:-64046764 Msa0563610:CDS
GCCAGAAGAACCACTTCCAC+CGG 0.517418 4_1:+64046990 None:intergenic
ACATTGTAAGTTCTGACCAT+TGG 0.517425 4_1:+64046780 None:intergenic
AAGTCATTCCAAATCTCCTA+TGG 0.520495 4_1:-64051450 Msa0563610:CDS
AACTTTCACGTCACAATGCA+AGG 0.530580 4_1:-64051150 Msa0563610:CDS
GAACCATTGCTCACTCTACT+CGG 0.540591 4_1:-64051677 Msa0563610:CDS
TCCAACTCCAACTGTGAAGA+GGG 0.543018 4_1:+64047126 None:intergenic
GATACACAGGAAAGGTTTGG+TGG 0.543330 4_1:+64046937 None:intergenic
AACTTTCAAATCACAATGCA+AGG 0.545524 4_1:-64046369 Msa0563610:CDS
CAAGACCGAGAAATCAATGC+CGG 0.550620 4_1:-64051857 Msa0563610:CDS
TCCCAGTCCCACTGGGAAGA+GGG 0.552029 4_1:+64051950 None:intergenic
AGTTATGGCTTGAAAAGCAC+TGG 0.554669 4_1:+64045015 None:intergenic
CCATTGCTCAATCTAAGACT+TGG 0.554906 4_1:-64046907 Msa0563610:CDS
TCTTCTGTCAACTAATCCAT+GGG 0.562513 4_1:-64049872 Msa0563610:CDS
CATCGAACTCAAACAGATCG+TGG 0.568188 4_1:+64051197 None:intergenic
GATAATCTTTCGCTGATGAA+AGG 0.568732 4_1:+64051495 None:intergenic
CCAGAGACAGAAGAAAGCTC+TGG 0.576248 4_1:+64051701 None:intergenic
ATTAGAATGTTCTAGAGACA+TGG 0.583823 4_1:+64049831 None:intergenic
GAAAAGAAATGCAAGTCCAA+TGG 0.587403 4_1:-64046796 Msa0563610:CDS
CCAAGTCTTAGATTGAGCAA+TGG 0.590002 4_1:+64046907 None:intergenic
AGTTACGGCTTGAACAGCAC+TGG 0.590790 4_1:+64049801 None:intergenic
CAAGAGCACAACCTTCAACC+TGG 0.591018 4_1:+64046746 None:intergenic
CAAGGCCACAACCTTCAACC+TGG 0.591428 4_1:+64051519 None:intergenic
AATATGTCAATTCCAACATG+TGG 0.594822 4_1:-64044931 Msa0563610:CDS
CTCTTCTGTCAACCAATCAG+TGG 0.597609 4_1:-64045087 Msa0563610:CDS
ACGGCTTGAACAGCACTGGT+TGG 0.597812 4_1:+64049805 None:intergenic
TTAGTCGCATATGAATCCCA+TGG 0.598308 4_1:+64049856 None:intergenic
TCTTCTGTCAACCAATCAGT+GGG 0.601400 4_1:-64045086 Msa0563610:CDS
TTCCAACTCCAACTGTGAAG+AGG 0.601663 4_1:+64047125 None:intergenic
GCCGGGTTGTTCGATACACC+TGG 0.605439 4_1:-64051839 Msa0563610:CDS
AATATCTCCCTCTTCACAGT+TGG 0.605827 4_1:-64047133 Msa0563610:CDS
AAGACCGAGAAATCAATGCC+GGG 0.606643 4_1:-64051856 Msa0563610:CDS
AGACTGCTACAAATTTAGCC+TGG 0.607461 4_1:-64045384 Msa0563610:CDS
AGACTGCTACAAATTTAGCC+TGG 0.607461 4_1:-64050147 Msa0563610:CDS
CCAGAAGAACCACTTCCACC+GGG 0.608276 4_1:+64046991 None:intergenic
GCTTTATCTTATTCACGCAG+TGG 0.608852 4_1:-64046304 Msa0563610:intron
ATACCATCTATAACCACCAT+AGG 0.609763 4_1:+64051434 None:intergenic
AAACCATCAATAACCACCAT+GGG 0.613240 4_1:+64046661 None:intergenic
CCTTCAACCTGGCAGCGTGG+TGG 0.616962 4_1:+64046757 None:intergenic
AGAGTTTGAGATCCACATGT+TGG 0.619666 4_1:+64044919 None:intergenic
TTCGGGTTGTATGATACACC+CGG 0.621273 4_1:-64047009 Msa0563610:CDS
TTGGTGCTCCCAGTCCCACT+GGG 0.623897 4_1:+64051943 None:intergenic
TTTCCGAGTAGAGTGAGCAA+TGG 0.627280 4_1:+64051674 None:intergenic
CTTTCGCTGATGAAAGGTCA+AGG 0.632145 4_1:+64051501 None:intergenic
CAATGGTTCACCAGATACAC+AGG 0.632835 4_1:+64046924 None:intergenic
TTAGCCTGGCAAAACATGAA+CGG 0.633733 4_1:-64050133 Msa0563610:CDS
AATATCTCCCTCTTCCCAGT+GGG 0.634960 4_1:-64051957 Msa0563610:CDS
CAAACCATCAATAACCACCA+TGG 0.635512 4_1:+64046660 None:intergenic
CAATATCTCCCTCTTCCCAG+TGG 0.638747 4_1:-64051958 Msa0563610:CDS
AAGTCATGCCAAATCTCCCA+TGG 0.638950 4_1:-64046677 Msa0563610:CDS
CAACCTTCAACCTGGCAGCG+TGG 0.648763 4_1:+64046754 None:intergenic
TCATTCCAAATCTCCTATGG+TGG 0.656270 4_1:-64051447 Msa0563610:CDS
GTTCACCAGATACACAGGAA+AGG 0.656685 4_1:+64046929 None:intergenic
CAACCTTCAACCTGGCAGCG+CGG 0.659706 4_1:+64051527 None:intergenic
CATGGCTCTGATGAAGCAAG+AGG 0.663007 4_1:+64044971 None:intergenic
CGGAAAACGAGTGTACATTG+AGG 0.675568 4_1:-64051657 Msa0563610:CDS
GGGTTGTTCGATACACCTGG+TGG 0.681597 4_1:-64051836 Msa0563610:CDS
AAAGACAACACTAACACACA+AGG 0.691256 4_1:-64050091 Msa0563610:intron
ACCAGGTGTATCGAACAACC+CGG 0.701562 4_1:+64051838 None:intergenic
TGATCATGATCACTACACCA+TGG 0.714032 4_1:+64044953 None:intergenic
TCATGCCAAATCTCCCATGG+TGG 0.722301 4_1:-64046674 Msa0563610:CDS
GGGTTGTATGATACACCCGG+TGG 0.736684 4_1:-64047006 Msa0563610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGAAATAATTTTTTTTTTTT+TGG - chr4_1:64045481-64045500 Msa0563610:intron 10.0%
!! AAATAATTATCATGATTGTT+TGG - chr4_1:64046360-64046379 Msa0563610:CDS 15.0%
!!! ATTCACTTTTAGTTTTTTAT+AGG - chr4_1:64046520-64046539 Msa0563610:intron 15.0%
!!! TTCTAACTTCTAATATATTT+TGG - chr4_1:64046601-64046620 Msa0563610:intron 15.0%
!!! TTTGAAAAAACAGTTTTTTA+GGG + chr4_1:64047667-64047686 None:intergenic 15.0%
!!! TTTTGAAAAAACAGTTTTTT+AGG + chr4_1:64047668-64047687 None:intergenic 15.0%
!!! AAACATTTTTTATTTTCAGT+TGG + chr4_1:64048082-64048101 None:intergenic 15.0%
!! ATTATTTAGTAACAACAATA+TGG - chr4_1:64048333-64048352 Msa0563610:intron 15.0%
!! ATAAATAGTAATTAATAGAG+TGG + chr4_1:64048980-64048999 None:intergenic 15.0%
!! ACTCTATTAATTACTATTTA+TGG - chr4_1:64048979-64048998 Msa0563610:intron 15.0%
!!! TTCATTTTTCATTTATTTCA+TGG - chr4_1:64050847-64050866 Msa0563610:intron 15.0%
!!! TTCTATCTTCTAATATATTT+TGG - chr4_1:64051364-64051383 Msa0563610:intron 15.0%
!!! TTTAGTTTCATAGATCTTAT+TGG - chr4_1:64046067-64046086 Msa0563610:intron 20.0%
!! ATAATTACTTATTCTCAGAA+AGG - chr4_1:64046223-64046242 Msa0563610:intron 20.0%
!!! AGTTGTTTTTTTACAAAATC+AGG + chr4_1:64046462-64046481 None:intergenic 20.0%
!! AAAAATCAGAACAAAAAATG+TGG + chr4_1:64046846-64046865 None:intergenic 20.0%
!! TTTATCATTTGTATCAGAAA+CGG + chr4_1:64046900-64046919 None:intergenic 20.0%
!! TCTCAACCTAATAAATTTAT+AGG - chr4_1:64047200-64047219 Msa0563610:intron 20.0%
!! TTAGGTCCTATAAATTTATT+AGG + chr4_1:64047209-64047228 None:intergenic 20.0%
!! AGTCATTACAACAAAAATTT+AGG + chr4_1:64047227-64047246 None:intergenic 20.0%
!!! TTAACTGCATTTTCAAAAAA+GGG - chr4_1:64047340-64047359 Msa0563610:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + chr4_1:64047707-64047726 None:intergenic 20.0%
!!! TGACAAATAAAATGACTTTT+AGG + chr4_1:64047776-64047795 None:intergenic 20.0%
!! ATATGAAAATAATTCCAAAC+GGG + chr4_1:64047837-64047856 None:intergenic 20.0%
!! GATATGAAAATAATTCCAAA+CGG + chr4_1:64047838-64047857 None:intergenic 20.0%
!! AATTAATTAGTAGTACAACA+TGG - chr4_1:64047996-64048015 Msa0563610:intron 20.0%
!! TTAGATTATATAAACAACAG+AGG + chr4_1:64048128-64048147 None:intergenic 20.0%
!!! TGTATATAGATTTGTTCTTT+AGG + chr4_1:64048279-64048298 None:intergenic 20.0%
!! TAATTAACATATCGAATTGA+CGG + chr4_1:64048541-64048560 None:intergenic 20.0%
!! ATAATAGTTTAAGTAAAGAC+TGG - chr4_1:64049044-64049063 Msa0563610:intron 20.0%
!! TCTAATTGCAAATGAAAAAA+TGG + chr4_1:64049254-64049273 None:intergenic 20.0%
!!! GGTGTTGATTATTTAAAAAA+AGG - chr4_1:64049401-64049420 Msa0563610:intron 20.0%
!!! CAAAAATCTTTCTTTTTCAA+GGG - chr4_1:64049973-64049992 Msa0563610:intron 20.0%
!! ATTTATTTCATGGATCTTAT+TGG - chr4_1:64050857-64050876 Msa0563610:intron 20.0%
!!! TAGATAGTTGATTTAGTTAA+AGG - chr4_1:64050937-64050956 Msa0563610:intron 20.0%
! AAATAGTTCATCGTCAAATA+GGG - chr4_1:64045047-64045066 Msa0563610:CDS 25.0%
!!! AAAACATGTATTTTTGCTTG+TGG - chr4_1:64045078-64045097 Msa0563610:CDS 25.0%
!!! AGGTTTTTGGAATTACTTTT+CGG + chr4_1:64045192-64045211 None:intergenic 25.0%
!!! CAAAAACCTATCTTTTTCAA+GGG - chr4_1:64045203-64045222 Msa0563610:intron 25.0%
! TGTTTCAATGTAATTGACAT+AGG - chr4_1:64045460-64045479 Msa0563610:intron 25.0%
! TTACAAGAGCTTAAAAAGAT+AGG + chr4_1:64046030-64046049 None:intergenic 25.0%
!!! TATTTGCTATATTAGAGTTG+TGG - chr4_1:64046247-64046266 Msa0563610:intron 25.0%
!!! ATTTGCTATATTAGAGTTGT+GGG - chr4_1:64046248-64046267 Msa0563610:intron 25.0%
! TGTATCATATGCCTTAATAA+GGG + chr4_1:64046341-64046360 None:intergenic 25.0%
! TTGTATCATATGCCTTAATA+AGG + chr4_1:64046342-64046361 None:intergenic 25.0%
!!! CAAAATCAGGTTTTAAAGAA+TGG + chr4_1:64046449-64046468 None:intergenic 25.0%
! AACTAAAAGTGAATGTTCTT+TGG + chr4_1:64046514-64046533 None:intergenic 25.0%
!!! CTGATTTTTTATAACTTTGC+AGG - chr4_1:64046857-64046876 Msa0563610:CDS 25.0%
! TAGTTAAAACCAGACAAATA+AGG + chr4_1:64047146-64047165 None:intergenic 25.0%
!!! TTTATTAGGTTGAGACTATT+TGG + chr4_1:64047195-64047214 None:intergenic 25.0%
!! CTTAACTGCATTTTCAAAAA+AGG - chr4_1:64047339-64047358 Msa0563610:intron 25.0%
!! TAACTGCATTTTCAAAAAAG+GGG - chr4_1:64047341-64047360 Msa0563610:intron 25.0%
! AATAAAAAATTCCCCTCATT+TGG - chr4_1:64047505-64047524 Msa0563610:intron 25.0%
! ATAAAAAATTCCCCTCATTT+GGG - chr4_1:64047506-64047525 Msa0563610:intron 25.0%
! GAGAACTCAAAAATTGTATT+GGG - chr4_1:64047528-64047547 Msa0563610:intron 25.0%
! AGAACTCAAAAATTGTATTG+GGG - chr4_1:64047529-64047548 Msa0563610:intron 25.0%
! ACCTTCAATAAAGGATTTAA+AGG - chr4_1:64047881-64047900 Msa0563610:intron 25.0%
! TCCTTTAAATCCTTTATTGA+AGG + chr4_1:64047885-64047904 None:intergenic 25.0%
!! ACAAAACAATAGGTTTTCAT+TGG + chr4_1:64047945-64047964 None:intergenic 25.0%
!!! ATGAAAACCTATTGTTTTGT+TGG - chr4_1:64047945-64047964 Msa0563610:intron 25.0%
! AAAATATCCTTATAATCGTG+AGG + chr4_1:64047974-64047993 None:intergenic 25.0%
! GATAAATTGTAGTTTCTCAT+TGG - chr4_1:64048018-64048037 Msa0563610:intron 25.0%
! AAGAAGAAGAAAGTTGAAAA+GGG + chr4_1:64048181-64048200 None:intergenic 25.0%
!!! CATATCTATTTTGTTTGCAT+GGG + chr4_1:64048373-64048392 None:intergenic 25.0%
!!! ACATATCTATTTTGTTTGCA+TGG + chr4_1:64048374-64048393 None:intergenic 25.0%
!!! TTATTTATTAAGTTGACCGT+TGG + chr4_1:64048456-64048475 None:intergenic 25.0%
! TGAAATTCAAAAAAGAAGAG+AGG + chr4_1:64048911-64048930 None:intergenic 25.0%
!! GTCTTTGAAAAAGAGAAAAT+AGG + chr4_1:64049017-64049036 None:intergenic 25.0%
!!! TTGTGTTTGTCTTCTTTTTT+TGG - chr4_1:64049094-64049113 Msa0563610:intron 25.0%
!! AAACAAGGAAAAGTATAACA+GGG + chr4_1:64049559-64049578 None:intergenic 25.0%
!!! TTAGCATTGATAATCTCATT+TGG - chr4_1:64049601-64049620 Msa0563610:intron 25.0%
!! ATCAGAAAAGCATAGAAATT+AGG + chr4_1:64049650-64049669 None:intergenic 25.0%
!! TAATTTCTATGCTTTTCTGA+TGG - chr4_1:64049649-64049668 Msa0563610:intron 25.0%
!! CTTTTGTATTAAGTAATGGT+AGG + chr4_1:64049724-64049743 None:intergenic 25.0%
!!! GTTGCTTTTGTATTAAGTAA+TGG + chr4_1:64049728-64049747 None:intergenic 25.0%
!! CCTTGAAAAAGAAAGATTTT+TGG + chr4_1:64049975-64049994 None:intergenic 25.0%
!!! CCAAAAATCTTTCTTTTTCA+AGG - chr4_1:64049972-64049991 Msa0563610:intron 25.0%
! ATGAAATGTAGAAATCTAAG+AGG - chr4_1:64050613-64050632 Msa0563610:intron 25.0%
!!! ATGATTAAACTTTTGAGTTG+TGG - chr4_1:64050912-64050931 Msa0563610:intron 25.0%
! AATCTAGTTAGTGAATACTT+CGG + chr4_1:64051178-64051197 None:intergenic 25.0%
!!! AGTTGTATTTTTACTAAACC+AGG + chr4_1:64051226-64051245 None:intergenic 25.0%
! TTTGGATGTAAAATGGAAAT+TGG + chr4_1:64051563-64051582 None:intergenic 25.0%
! AAAAAATCAGCACAAAAATG+TGG + chr4_1:64051632-64051651 None:intergenic 25.0%
!!! TGATTTTTTTTTACTCTTGC+AGG - chr4_1:64051643-64051662 Msa0563610:CDS 25.0%
! ATTAGAATGTTCTTCAGAAA+TGG + chr4_1:64051773-64051792 None:intergenic 25.0%
CAAATAGTTCATCGTCAAAT+AGG - chr4_1:64045046-64045065 Msa0563610:CDS 30.0%
! CCTTGAAAAAGATAGGTTTT+TGG + chr4_1:64045205-64045224 None:intergenic 30.0%
!! CCAAAAACCTATCTTTTTCA+AGG - chr4_1:64045202-64045221 Msa0563610:intron 30.0%
CAAAATCCCTTGAAAAAGAT+AGG + chr4_1:64045212-64045231 None:intergenic 30.0%
TTTGCGTCATCTTTAAGTAT+TGG - chr4_1:64045228-64045247 Msa0563610:intron 30.0%
!!! AACTTGCTGTCTTTTTTGAA+TGG - chr4_1:64045563-64045582 Msa0563610:intron 30.0%
TTATTTGCTTCAAATGCTGA+AGG - chr4_1:64045593-64045612 Msa0563610:intron 30.0%
!! ACAAAACTGATTGACTTGAT+TGG + chr4_1:64045717-64045736 None:intergenic 30.0%
!! TTCTGCTTGTTATCTATGTT+TGG - chr4_1:64045789-64045808 Msa0563610:intron 30.0%
!! TCTGCTTGTTATCTATGTTT+GGG - chr4_1:64045790-64045809 Msa0563610:intron 30.0%
AAAGCTGAAAAGATGAAATG+TGG - chr4_1:64045817-64045836 Msa0563610:intron 30.0%
GCAATGTTTATTGTCAACTA+AGG + chr4_1:64045867-64045886 None:intergenic 30.0%
AAACTCTTATGCAAATAAGC+AGG + chr4_1:64045944-64045963 None:intergenic 30.0%
! CCTTAATTCTCTAAAGACTT+AGG + chr4_1:64046310-64046329 None:intergenic 30.0%
! CCTAAGTCTTTAGAGAATTA+AGG - chr4_1:64046307-64046326 Msa0563610:CDS 30.0%
GTATCATATGCCTTAATAAG+GGG + chr4_1:64046340-64046359 None:intergenic 30.0%
! TGTTAGTGTTGTCTTTTGTT+TGG + chr4_1:64046720-64046739 None:intergenic 30.0%
TTTGGATGTAAAATGGACAA+CGG + chr4_1:64046776-64046795 None:intergenic 30.0%
CAAGAACTTTGGATGTAAAA+TGG + chr4_1:64046783-64046802 None:intergenic 30.0%
! TAACCTCAATTGGATACTTT+TGG + chr4_1:64046809-64046828 None:intergenic 30.0%
AAACGTGAAATAACCTCAAT+TGG + chr4_1:64046819-64046838 None:intergenic 30.0%
!! ATTAGAATGTTCTAGAGACA+TGG + chr4_1:64046987-64047006 None:intergenic 30.0%
CATGATTCTGATTAAACAAG+AGG + chr4_1:64047061-64047080 None:intergenic 30.0%
! CTCTTGTTTAATCAGAATCA+TGG - chr4_1:64047059-64047078 Msa0563610:CDS 30.0%
AGCTTAATCTGATCATACTA+AGG - chr4_1:64047364-64047383 Msa0563610:intron 30.0%
!! ATCATACTAAGGCTTTGTTT+GGG - chr4_1:64047375-64047394 Msa0563610:intron 30.0%
TGGAAGAAATAGAAGACATT+GGG - chr4_1:64047448-64047467 Msa0563610:intron 30.0%
GGAGAACTCAAAAATTGTAT+TGG - chr4_1:64047527-64047546 Msa0563610:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG - chr4_1:64047530-64047549 Msa0563610:intron 30.0%
!!! ATGACTTTTAGGCTTTGTTT+GGG + chr4_1:64047765-64047784 None:intergenic 30.0%
!!! AATGACTTTTAGGCTTTGTT+TGG + chr4_1:64047766-64047785 None:intergenic 30.0%
ATATAAACAACAGAGGACAA+GGG + chr4_1:64048121-64048140 None:intergenic 30.0%
TATATAAACAACAGAGGACA+AGG + chr4_1:64048122-64048141 None:intergenic 30.0%
AGAAGAAGAAAGTTGAAAAG+GGG + chr4_1:64048180-64048199 None:intergenic 30.0%
GAAGAAGAAGAAAGTTGAAA+AGG + chr4_1:64048182-64048201 None:intergenic 30.0%
ATAAAAATGCAGCGAACTAA+GGG + chr4_1:64048232-64048251 None:intergenic 30.0%
TATAAAAATGCAGCGAACTA+AGG + chr4_1:64048233-64048252 None:intergenic 30.0%
!!! GGTTTTAGAAAAGTAAGCAA+AGG + chr4_1:64048258-64048277 None:intergenic 30.0%
GATAAACGTTGAAGAAATTG+AGG + chr4_1:64048506-64048525 None:intergenic 30.0%
!! TTGATTTTGTCTTTTCTGGT+GGG - chr4_1:64048639-64048658 Msa0563610:intron 30.0%
!! AACGTTGTTTGTTGTTTGAA+TGG + chr4_1:64048720-64048739 None:intergenic 30.0%
!! ATGATGTTTTGAATAGTGAC+AGG + chr4_1:64048777-64048796 None:intergenic 30.0%
TAAAGGAAAAACAGAGAAAG+AGG + chr4_1:64048887-64048906 None:intergenic 30.0%
CAAAAAAGAAGAGAGGATAA+AGG + chr4_1:64048904-64048923 None:intergenic 30.0%
AACATCAACTAAACAGTTAC+TGG + chr4_1:64049213-64049232 None:intergenic 30.0%
!! TTAATCCATTTTTCTTGCCT+TGG - chr4_1:64049367-64049386 Msa0563610:intron 30.0%
AACACCATTAATATTTGCCA+AGG + chr4_1:64049387-64049406 None:intergenic 30.0%
! GAAACAAGGAAAAGTATAAC+AGG + chr4_1:64049560-64049579 None:intergenic 30.0%
! GCTTTTCTAATCTAGAAACA+AGG + chr4_1:64049574-64049593 None:intergenic 30.0%
!! AGTTTGGTGGTTGTAATTTT+GGG + chr4_1:64049757-64049776 None:intergenic 30.0%
! TCAATCTAAGACTTGGTAAA+AGG - chr4_1:64049915-64049934 Msa0563610:CDS 30.0%
! TGGTAAAAGGATGTATTTTG+AGG - chr4_1:64049928-64049947 Msa0563610:CDS 30.0%
!!! AGATTTTTGGAATCACTTTC+TGG + chr4_1:64049962-64049981 None:intergenic 30.0%
! TTTGCGATGATAATCTTTTG+CGG + chr4_1:64050104-64050123 None:intergenic 30.0%
!! AATCTAATTCAACTTGCTGT+TGG - chr4_1:64050324-64050343 Msa0563610:intron 30.0%
! CACTTTTCTTAAAATGCTGA+AGG - chr4_1:64050374-64050393 Msa0563610:intron 30.0%
AACTTTCAAATCACAATGCA+AGG - chr4_1:64050446-64050465 Msa0563610:intron 30.0%
GTGAATAAGATAAAGCTGAT+TGG + chr4_1:64050507-64050526 None:intergenic 30.0%
GCAATGTTAATAGTCAACTA+AGG + chr4_1:64050659-64050678 None:intergenic 30.0%
TAGTTGACTATTAACATTGC+TGG - chr4_1:64050659-64050678 Msa0563610:intron 30.0%
AAACTCTTGAGTAAATAAGC+AGG + chr4_1:64050736-64050755 None:intergenic 30.0%
CTTACAAGAGGTTAAAAGAT+AGG + chr4_1:64050822-64050841 None:intergenic 30.0%
AAATGAACAGAACTTACAAG+AGG + chr4_1:64050834-64050853 None:intergenic 30.0%
! ATTTTCAATCGTCATACATC+TGG - chr4_1:64050880-64050899 Msa0563610:intron 30.0%
TTATCCTGATTGTTAGAGTT+TGG - chr4_1:64051024-64051043 Msa0563610:intron 30.0%
!! TCCACTTTTGGTTGTTTTAT+AGG - chr4_1:64051283-64051302 Msa0563610:intron 30.0%
ACCTATAAAACAACCAAAAG+TGG + chr4_1:64051287-64051306 None:intergenic 30.0%
!!! ATATATTTTGGTTCTGCAGA+TGG - chr4_1:64051376-64051395 Msa0563610:intron 30.0%
!!! TATATTTTGGTTCTGCAGAT+GGG - chr4_1:64051377-64051396 Msa0563610:intron 30.0%
AATATGTCAATTCCAACATG+TGG - chr4_1:64051884-64051903 Msa0563610:CDS 30.0%
! CTTTTGTGTGGAAGAATGAT+TGG + chr4_1:64044894-64044913 None:intergenic 35.0%
!!! GATTTTCAGTTGCTTTTGTG+TGG + chr4_1:64044906-64044925 None:intergenic 35.0%
!!! ATATTTTTGGCTCTGCATCA+AGG - chr4_1:64045007-64045026 Msa0563610:CDS 35.0%
GATAATCTTTCGCTGATGAA+AGG + chr4_1:64045323-64045342 None:intergenic 35.0%
AAGTCATTCCAAATCTCCTA+TGG - chr4_1:64045365-64045384 Msa0563610:CDS 35.0%
TATAACCACCATAGGAGATT+TGG + chr4_1:64045376-64045395 None:intergenic 35.0%
ATACCATCTATAACCACCAT+AGG + chr4_1:64045384-64045403 None:intergenic 35.0%
TATGGTGGTTATAGATGGTA+TGG - chr4_1:64045383-64045402 Msa0563610:CDS 35.0%
CAACTAAGGTATGCATAACA+TGG + chr4_1:64045853-64045872 None:intergenic 35.0%
GTTTACCTTGCAAGTTACAA+TGG - chr4_1:64045960-64045979 Msa0563610:intron 35.0%
! AATGTCCATTGTAACTTGCA+AGG + chr4_1:64045968-64045987 None:intergenic 35.0%
!! AACATGACTGTTACTTTGCA+TGG + chr4_1:64046196-64046215 None:intergenic 35.0%
TATATTAGAGTTGTGGGATG+AGG - chr4_1:64046254-64046273 Msa0563610:intron 35.0%
TGAGGACTGGATATAGTTAA+AGG - chr4_1:64046272-64046291 Msa0563610:intron 35.0%
GTTAGTAAAGACTTCAGCTT+AGG + chr4_1:64046408-64046427 None:intergenic 35.0%
!!! ATATATTTTGGTTCCGCAGA+TGG - chr4_1:64046613-64046632 Msa0563610:intron 35.0%
AAAGACAACACTAACACACA+AGG - chr4_1:64046724-64046743 Msa0563610:CDS 35.0%
!! ACTTTTGGTTGCAAGAACTT+TGG + chr4_1:64046794-64046813 None:intergenic 35.0%
!! CAACCAAAAGTATCCAATTG+AGG - chr4_1:64046803-64046822 Msa0563610:CDS 35.0%
TCTTCTGTCAACTAATCCAT+GGG - chr4_1:64046943-64046962 Msa0563610:CDS 35.0%
! TTCAGAGAACCTTATTTGTC+TGG - chr4_1:64047134-64047153 Msa0563610:CDS 35.0%
TTATTATCTCTCTCTTCTCG+TGG - chr4_1:64047251-64047270 Msa0563610:intron 35.0%
!! GATCATACTAAGGCTTTGTT+TGG - chr4_1:64047374-64047393 Msa0563610:intron 35.0%
GTGGAAGAAATAGAAGACAT+TGG - chr4_1:64047447-64047466 Msa0563610:intron 35.0%
!!! TTTTGAGTTCTCCCAAATGA+GGG + chr4_1:64047520-64047539 None:intergenic 35.0%
!!! TTTTTGAGTTCTCCCAAATG+AGG + chr4_1:64047521-64047540 None:intergenic 35.0%
TCAAAAATTGTATTGGGGGA+GGG - chr4_1:64047534-64047553 Msa0563610:intron 35.0%
!! ACGTTGGTAACCTTCAATAA+AGG - chr4_1:64047872-64047891 Msa0563610:intron 35.0%
ATATCCTTATAATCGTGAGG+TGG + chr4_1:64047971-64047990 None:intergenic 35.0%
TGTAGTTTCTCATTGGATGT+CGG - chr4_1:64048025-64048044 Msa0563610:intron 35.0%
!! TTATTAAGTTGACCGTTGGT+CGG + chr4_1:64048452-64048471 None:intergenic 35.0%
TAACATATCGAATTGACGGA+AGG + chr4_1:64048537-64048556 None:intergenic 35.0%
AGTTCAATGTTCAACATTGC+AGG + chr4_1:64048565-64048584 None:intergenic 35.0%
! ACATTGAACTAGCCTACTTA+AGG - chr4_1:64048575-64048594 Msa0563610:intron 35.0%
!! CTGGTTGATTTTGTCTTTTC+TGG - chr4_1:64048635-64048654 Msa0563610:intron 35.0%
!! GTTGATTTTGTCTTTTCTGG+TGG - chr4_1:64048638-64048657 Msa0563610:intron 35.0%
!! ATGTTTTGAATAGTGACAGG+TGG + chr4_1:64048774-64048793 None:intergenic 35.0%
AATGCATAATTGCAGCATAG+AGG + chr4_1:64049298-64049317 None:intergenic 35.0%
ATTTGCCAAGGCAAGAAAAA+TGG + chr4_1:64049375-64049394 None:intergenic 35.0%
CTTGCCTTGGCAAATATTAA+TGG - chr4_1:64049380-64049399 Msa0563610:intron 35.0%
!! CAGTTTGGTGGTTGTAATTT+TGG + chr4_1:64049758-64049777 None:intergenic 35.0%
CAAAATTACAACCACCAAAC+TGG - chr4_1:64049756-64049775 Msa0563610:intron 35.0%
CTTGACCGAGAAATCAATTT+CGG - chr4_1:64049788-64049807 Msa0563610:intron 35.0%
TTGACCGAGAAATCAATTTC+GGG - chr4_1:64049789-64049808 Msa0563610:intron 35.0%
! ACAACCCGAAATTGATTTCT+CGG + chr4_1:64049796-64049815 None:intergenic 35.0%
GAAAAGAAATGCAAGTCCAA+TGG - chr4_1:64050019-64050038 Msa0563610:intron 35.0%
! ACATTGTAAGTTCTGACCAT+TGG + chr4_1:64050038-64050057 None:intergenic 35.0%
AAACCATCAATAACCACCAT+GGG + chr4_1:64050157-64050176 None:intergenic 35.0%
CATCAAACTCAAACAGATCA+TGG + chr4_1:64050402-64050421 None:intergenic 35.0%
! CATGATCTGTTTGAGTTTGA+TGG - chr4_1:64050400-64050419 Msa0563610:intron 35.0%
CAGCTTGACGATGATATATA+CGG + chr4_1:64050474-64050493 None:intergenic 35.0%
!! ATAAAGCTGATTGGCTTGAT+TGG + chr4_1:64050498-64050517 None:intergenic 35.0%
! TTAGTTAAAGGCACAAGACA+TGG - chr4_1:64050949-64050968 Msa0563610:intron 35.0%
ACATGGTTAAGATCCCAATT+GGG - chr4_1:64050966-64050985 Msa0563610:intron 35.0%
ATGTCCAAACTCTAACAATC+AGG + chr4_1:64051031-64051050 None:intergenic 35.0%
CTAAACCAGGTATTAACGAA+TGG + chr4_1:64051213-64051232 None:intergenic 35.0%
AACCAAAAGTGGATGTTCTT+TGG + chr4_1:64051276-64051295 None:intergenic 35.0%
GCAGTCTTGGAATTAGAAAA+TGG + chr4_1:64051418-64051437 None:intergenic 35.0%
! AAGGGAAAATCTTTTGCTTG+GGG + chr4_1:64051481-64051500 None:intergenic 35.0%
! CAAGGGAAAATCTTTTGCTT+GGG + chr4_1:64051482-64051501 None:intergenic 35.0%
! TCAAGGGAAAATCTTTTGCT+TGG + chr4_1:64051483-64051502 None:intergenic 35.0%
GAAGGACTTTGGATGTAAAA+TGG + chr4_1:64051570-64051589 None:intergenic 35.0%
ATAACCTGGATTGATACTCT+TGG + chr4_1:64051596-64051615 None:intergenic 35.0%
GCAATAAACGTGAAATAACC+TGG + chr4_1:64046824-64046843 None:intergenic 35.0%
CTGATTCATTGCATGAGTTA+TGG + chr4_1:64051818-64051837 None:intergenic 35.0%
TTCAGAGAACCTTATGAGTA+TGG - chr4_1:64051952-64051971 Msa0563610:CDS 35.0%
TGGTGAAAACCATACTCATA+AGG + chr4_1:64051964-64051983 None:intergenic 35.0%
!! CAGCTTGGTGGTTGTAATTT+TGG + chr4_1:64044928-64044947 None:intergenic 40.0%
CAAAATTACAACCACCAAGC+TGG - chr4_1:64044926-64044945 Msa0563610:CDS 40.0%
CCAAAAATATCACTTCCACC+AGG + chr4_1:64044997-64045016 None:intergenic 40.0%
! CCTGGTGGAAGTGATATTTT+TGG - chr4_1:64044994-64045013 Msa0563610:CDS 40.0%
TCATTCCAAATCTCCTATGG+TGG - chr4_1:64045368-64045387 Msa0563610:CDS 40.0%
TCTCCTATGGTGGTTATAGA+TGG - chr4_1:64045378-64045397 Msa0563610:CDS 40.0%
AACTTTCACGTCACAATGCA+AGG - chr4_1:64045665-64045684 Msa0563610:intron 40.0%
TCAACTGTCATACGTTTCGA+TGG - chr4_1:64046094-64046113 Msa0563610:intron 40.0%
CATACGTTTCGATGGTAAAG+AGG - chr4_1:64046102-64046121 Msa0563610:intron 40.0%
GCAGTCTCTGAATTAGCAAA+TGG + chr4_1:64046655-64046674 None:intergenic 40.0%
AGACTGCTACAAATTTAGCC+TGG - chr4_1:64046668-64046687 Msa0563610:CDS 40.0%
TTAGCCTGGCAAAACATGAA+CGG - chr4_1:64046682-64046701 Msa0563610:CDS 40.0%
!! CTTTTGTTTGGAAGAGCTTG+CGG + chr4_1:64046708-64046727 None:intergenic 40.0%
CTCTTCTGTCAACTAATCCA+TGG - chr4_1:64046942-64046961 Msa0563610:CDS 40.0%
TTAGTCGCATATGAATCCCA+TGG + chr4_1:64046962-64046981 None:intergenic 40.0%
CTGACTCATTGCATGAGTTA+CGG + chr4_1:64047032-64047051 None:intergenic 40.0%
AACATGTCAATTCCAGCATG+TGG - chr4_1:64047084-64047103 Msa0563610:CDS 40.0%
ACATTATGAGATCCACATGC+TGG + chr4_1:64047099-64047118 None:intergenic 40.0%
GAGAAACACGAAGCAATTCT+GGG - chr4_1:64047283-64047302 Msa0563610:intron 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr4_1:64047382-64047401 Msa0563610:intron 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG - chr4_1:64047419-64047438 Msa0563610:intron 40.0%
ATAGAAGACATTGGGAGTAG+AGG - chr4_1:64047456-64047475 Msa0563610:intron 40.0%
TAGAAGACATTGGGAGTAGA+GGG - chr4_1:64047457-64047476 Msa0563610:intron 40.0%
! TTTGAGTTCTCCCAAATGAG+GGG + chr4_1:64047519-64047538 None:intergenic 40.0%
CTCAAAAATTGTATTGGGGG+AGG - chr4_1:64047533-64047552 Msa0563610:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr4_1:64047758-64047777 None:intergenic 40.0%
TGTCATATGTCAAAGTGCAG+TGG - chr4_1:64047791-64047810 Msa0563610:intron 40.0%
!!! TGAACATTTTAGAGCCCGTT+TGG - chr4_1:64047820-64047839 Msa0563610:intron 40.0%
TCATTTCTGTTTCCAGACGT+TGG - chr4_1:64047856-64047875 Msa0563610:intron 40.0%
TATTGAAGGTTACCAACGTC+TGG + chr4_1:64047871-64047890 None:intergenic 40.0%
! ACAGAGGACAAGGGTTATTT+TGG + chr4_1:64048112-64048131 None:intergenic 40.0%
GCTACAATTGGCATTAGAAC+AGG + chr4_1:64048158-64048177 None:intergenic 40.0%
AGTTGAAAAGGGGCTACAAT+TGG + chr4_1:64048170-64048189 None:intergenic 40.0%
AAGCTACTTCGTCCTTAAGT+AGG + chr4_1:64048590-64048609 None:intergenic 40.0%
TCAGGGGTAGTTAAGAAGAA+AGG - chr4_1:64048612-64048631 Msa0563610:intron 40.0%
AAAGCAGTGTTCCAACCATT+TGG + chr4_1:64048695-64048714 None:intergenic 40.0%
! TTTTGAATAGTGACAGGTGG+TGG + chr4_1:64048771-64048790 None:intergenic 40.0%
AACGTACCACTAGAATGGAA+GGG + chr4_1:64048864-64048883 None:intergenic 40.0%
AATATCTCCCTCTTCACAGT+TGG - chr4_1:64049682-64049701 Msa0563610:intron 40.0%
TTCACAGTTGGAGTTGGAAT+GGG - chr4_1:64049694-64049713 Msa0563610:intron 40.0%
TCAAGTTCCATACTCCAGTT+TGG + chr4_1:64049773-64049792 None:intergenic 40.0%
CCAAGTCTTAGATTGAGCAA+TGG + chr4_1:64049911-64049930 None:intergenic 40.0%
! CCATTGCTCAATCTAAGACT+TGG - chr4_1:64049908-64049927 Msa0563610:CDS 40.0%
AATAACCACCATGGGAGATT+TGG + chr4_1:64050149-64050168 None:intergenic 40.0%
CAAACCATCAATAACCACCA+TGG + chr4_1:64050158-64050177 None:intergenic 40.0%
! CATGGTGGTTATTGATGGTT+TGG - chr4_1:64050156-64050175 Msa0563610:CDS 40.0%
GCTTTATCTTATTCACGCAG+TGG - chr4_1:64050511-64050530 Msa0563610:intron 40.0%
CAACTAAGGCATGCATAACA+TGG + chr4_1:64050645-64050664 None:intergenic 40.0%
! AATGTCTCGTGTAACTTGCA+AGG + chr4_1:64050760-64050779 None:intergenic 40.0%
TCAATCGTCATACATCTGGA+TGG - chr4_1:64050884-64050903 Msa0563610:intron 40.0%
GACATGGTTAAGATCCCAAT+TGG - chr4_1:64050965-64050984 Msa0563610:intron 40.0%
CATGGTTAAGATCCCAATTG+GGG - chr4_1:64050967-64050986 Msa0563610:intron 40.0%
! AAGAGTATGCTACCCCAATT+GGG + chr4_1:64050982-64051001 None:intergenic 40.0%
GTTAGTGAATACTTCGGCTT+AGG + chr4_1:64051172-64051191 None:intergenic 40.0%
GTATGCCATTCGTTAATACC+TGG - chr4_1:64051205-64051224 Msa0563610:intron 40.0%
! GACCAAAGAACATCCACTTT+TGG - chr4_1:64051271-64051290 Msa0563610:intron 40.0%
GGCTAAATTTGTAGCAGTCT+TGG + chr4_1:64046668-64046687 None:intergenic 40.0%
AGACTGCTACAAATTTAGCC+TGG - chr4_1:64046668-64046687 Msa0563610:CDS 40.0%
! AGGGAAAATCTTTTGCTTGG+GGG + chr4_1:64051480-64051499 None:intergenic 40.0%
! TTGTCTTTTGCAGGCTTCAA+GGG + chr4_1:64051499-64051518 None:intergenic 40.0%
! GTGTCAATGTTGTCTTTTGC+AGG + chr4_1:64051508-64051527 None:intergenic 40.0%
CAACATTGACACACCAAGTA+CGG - chr4_1:64051516-64051535 Msa0563610:CDS 40.0%
! GAAAGCATATTGACCGTACT+TGG + chr4_1:64051532-64051551 None:intergenic 40.0%
GATTGATACTCTTGGTTGGA+AGG + chr4_1:64051588-64051607 None:intergenic 40.0%
TCTTCTGTCAACCAATCAGT+GGG - chr4_1:64051729-64051748 Msa0563610:CDS 40.0%
! AGTTATGGCTTGAAAAGCAC+TGG + chr4_1:64051803-64051822 None:intergenic 40.0%
TGATCATGATCACTACACCA+TGG + chr4_1:64051865-64051884 None:intergenic 40.0%
! AGAGTTTGAGATCCACATGT+TGG + chr4_1:64051899-64051918 None:intergenic 40.0%
AATATCTCCCTCTTCCCAGT+GGG - chr4_1:64044858-64044877 Msa0563610:CDS 45.0%
! TCTTGTTTGATGCTCCAGCT+TGG + chr4_1:64044943-64044962 None:intergenic 45.0%
CAAGACCGAGAAATCAATGC+CGG - chr4_1:64044958-64044977 Msa0563610:CDS 45.0%
AAGACCGAGAAATCAATGCC+GGG - chr4_1:64044959-64044978 Msa0563610:CDS 45.0%
!! ACAACCCGGCATTGATTTCT+CGG + chr4_1:64044966-64044985 None:intergenic 45.0%
GAACCATTGCTCACTCTACT+CGG - chr4_1:64045138-64045157 Msa0563610:CDS 45.0%
TTTCCGAGTAGAGTGAGCAA+TGG + chr4_1:64045144-64045163 None:intergenic 45.0%
CGGAAAACGAGTGTACATTG+AGG - chr4_1:64045158-64045177 Msa0563610:intron 45.0%
CTTTCGCTGATGAAAGGTCA+AGG + chr4_1:64045317-64045336 None:intergenic 45.0%
CATCGAACTCAAACAGATCG+TGG + chr4_1:64045621-64045640 None:intergenic 45.0%
! TGACTTGATTGGAGTGCTTC+AGG + chr4_1:64045706-64045725 None:intergenic 45.0%
!! TCAGTTTTGTCTTCACGCTG+TGG - chr4_1:64045727-64045746 Msa0563610:intron 45.0%
AGGTAGCGTACCCCTTATTA+AGG - chr4_1:64046327-64046346 Msa0563610:CDS 45.0%
!! CATCTGTTGCTTTCCATCTG+CGG + chr4_1:64046629-64046648 None:intergenic 45.0%
CGAGAAACACGAAGCAATTC+TGG - chr4_1:64047282-64047301 Msa0563610:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr4_1:64047386-64047405 Msa0563610:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr4_1:64047387-64047406 Msa0563610:intron 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG - chr4_1:64047415-64047434 Msa0563610:intron 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG - chr4_1:64047428-64047447 Msa0563610:intron 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG - chr4_1:64047540-64047559 Msa0563610:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG - chr4_1:64047541-64047560 Msa0563610:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr4_1:64047387-64047406 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr4_1:64047386-64047405 None:intergenic 45.0%
GAGGTGGCCAACAAAACAAT+AGG + chr4_1:64047955-64047974 None:intergenic 45.0%
TTGGCCACCTCACGATTATA+AGG - chr4_1:64047964-64047983 Msa0563610:intron 45.0%
AATGCAGCGAACTAAGGGTA+TGG + chr4_1:64048227-64048246 None:intergenic 45.0%
AAGGACGAAGTAGCTTACTC+AGG - chr4_1:64048594-64048613 Msa0563610:intron 45.0%
AGGACGAAGTAGCTTACTCA+GGG - chr4_1:64048595-64048614 Msa0563610:intron 45.0%
GGGTAGTTAAGAAGAAAGGC+TGG - chr4_1:64048616-64048635 Msa0563610:intron 45.0%
GCTTCTCTGCTCATTCCAAA+TGG - chr4_1:64048677-64048696 Msa0563610:intron 45.0%
CTCTGCTCATTCCAAATGGT+TGG - chr4_1:64048681-64048700 Msa0563610:intron 45.0%
GAACGTACCACTAGAATGGA+AGG + chr4_1:64048865-64048884 None:intergenic 45.0%
AGAGGAACGTACCACTAGAA+TGG + chr4_1:64048869-64048888 None:intergenic 45.0%
TCCAACTCCAACTGTGAAGA+GGG + chr4_1:64049692-64049711 None:intergenic 45.0%
TTCCAACTCCAACTGTGAAG+AGG + chr4_1:64049693-64049712 None:intergenic 45.0%
CTTCACAGTTGGAGTTGGAA+TGG - chr4_1:64049693-64049712 Msa0563610:intron 45.0%
ACAACCACCAAACTGGAGTA+TGG - chr4_1:64049763-64049782 Msa0563610:intron 45.0%
AGTTCCATACTCCAGTTTGG+TGG + chr4_1:64049770-64049789 None:intergenic 45.0%
!! TTCGGGTTGTATGATACACC+CGG - chr4_1:64049806-64049825 Msa0563610:intron 45.0%
GATACACAGGAAAGGTTTGG+TGG + chr4_1:64049881-64049900 None:intergenic 45.0%
CCAGATACACAGGAAAGGTT+TGG + chr4_1:64049884-64049903 None:intergenic 45.0%
CCAAACCTTTCCTGTGTATC+TGG - chr4_1:64049881-64049900 Msa0563610:CDS 45.0%
GTTCACCAGATACACAGGAA+AGG + chr4_1:64049889-64049908 None:intergenic 45.0%
CAATGGTTCACCAGATACAC+AGG + chr4_1:64049894-64049913 None:intergenic 45.0%
AAGTCATGCCAAATCTCCCA+TGG - chr4_1:64050138-64050157 Msa0563610:CDS 45.0%
TCTCCCATGGTGGTTATTGA+TGG - chr4_1:64050151-64050170 Msa0563610:CDS 45.0%
! GATTTTGCCAGCAATGTAGC+AGG - chr4_1:64050185-64050204 Msa0563610:CDS 45.0%
AGCTTTACCTGCTACATTGC+TGG + chr4_1:64050195-64050214 None:intergenic 45.0%
! CAAGAGTATGCTACCCCAAT+TGG + chr4_1:64050983-64051002 None:intergenic 45.0%
! GTTGTCTTTTGCAGGCTTCA+AGG + chr4_1:64051500-64051519 None:intergenic 45.0%
ACTCTTGGTTGGAAGGACTT+TGG + chr4_1:64051581-64051600 None:intergenic 45.0%
CCTGGATTGATACTCTTGGT+TGG + chr4_1:64051592-64051611 None:intergenic 45.0%
!! CCAACCAAGAGTATCAATCC+AGG - chr4_1:64051589-64051608 Msa0563610:CDS 45.0%
CTCTTCTGTCAACCAATCAG+TGG - chr4_1:64051728-64051747 Msa0563610:CDS 45.0%
CGCATATGAATCCCACTGAT+TGG + chr4_1:64051743-64051762 None:intergenic 45.0%
! TGAGTATGGTTTTCACCAGC+TGG - chr4_1:64051966-64051985 Msa0563610:CDS 45.0%
! GAGTATGGTTTTCACCAGCT+GGG - chr4_1:64051967-64051986 Msa0563610:CDS 45.0%
CAATATCTCCCTCTTCCCAG+TGG - chr4_1:64044857-64044876 Msa0563610:CDS 50.0%
TGTTTGATGCTCCAGCTTGG+TGG + chr4_1:64044940-64044959 None:intergenic 50.0%
ACCAGGTGTATCGAACAACC+CGG + chr4_1:64044980-64044999 None:intergenic 50.0%
CCAGAGACAGAAGAAAGCTC+TGG + chr4_1:64045117-64045136 None:intergenic 50.0%
CCAGAGCTTTCTTCTGTCTC+TGG - chr4_1:64045114-64045133 Msa0563610:CDS 50.0%
!!! CGTCGATTTTGCCAGCAATG+TGG - chr4_1:64045408-64045427 Msa0563610:CDS 50.0%
! GATTTTGCCAGCAATGTGGC+AGG - chr4_1:64045412-64045431 Msa0563610:CDS 50.0%
AGCTTTACCTGCCACATTGC+TGG + chr4_1:64045422-64045441 None:intergenic 50.0%
TAGAGTTGTGGGATGAGGAC+TGG - chr4_1:64046259-64046278 Msa0563610:intron 50.0%
AGTTACGGCTTGAACAGCAC+TGG + chr4_1:64047017-64047036 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr4_1:64047385-64047404 Msa0563610:intron 50.0%
ACATTGGGAGTAGAGGGCTT+TGG - chr4_1:64047463-64047482 Msa0563610:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG - chr4_1:64047542-64047561 Msa0563610:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG + chr4_1:64047748-64047767 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr4_1:64047385-64047404 None:intergenic 50.0%
! CGAACTAAGGGTATGGCAAC+TGG + chr4_1:64048220-64048239 None:intergenic 50.0%
GGACGAAGTAGCTTACTCAG+GGG - chr4_1:64048596-64048615 Msa0563610:intron 50.0%
! GAATGAGCAGAGAAGCACAG+TGG + chr4_1:64048673-64048692 None:intergenic 50.0%
TGGAAGGGTGAAGGAAGAGT+GGG + chr4_1:64048849-64048868 None:intergenic 50.0%
ATGGAAGGGTGAAGGAAGAG+TGG + chr4_1:64048850-64048869 None:intergenic 50.0%
CCACTAGAATGGAAGGGTGA+AGG + chr4_1:64048858-64048877 None:intergenic 50.0%
CCTTCACCCTTCCATTCTAG+TGG - chr4_1:64048855-64048874 Msa0563610:intron 50.0%
TCCCTCTTCACAGTTGGAGT+TGG - chr4_1:64049688-64049707 Msa0563610:intron 50.0%
TATGATACACCCGGTGGAAG+TGG - chr4_1:64049815-64049834 Msa0563610:CDS 50.0%
! CAAGAGCACAACCTTCAACC+TGG + chr4_1:64050072-64050091 None:intergenic 50.0%
TCATGCCAAATCTCCCATGG+TGG - chr4_1:64050141-64050160 Msa0563610:CDS 50.0%
AGCAGGACAGCAAAGAAGAG+TGG + chr4_1:64050719-64050738 None:intergenic 50.0%
! GCTGTTGTGCATGTTTTGCC+AGG + chr4_1:64051452-64051471 None:intergenic 50.0%
!! CATGGCTCTGATGAAGCAAG+AGG + chr4_1:64051847-64051866 None:intergenic 50.0%
CTCTTGCTTCATCAGAGCCA+TGG - chr4_1:64051845-64051864 Msa0563610:CDS 50.0%
GGGTTGTTCGATACACCTGG+TGG - chr4_1:64044979-64044998 Msa0563610:CDS 55.0%
CAAGGCCACAACCTTCAACC+TGG + chr4_1:64045299-64045318 None:intergenic 55.0%
!! ACGGCTTGAACAGCACTGGT+TGG + chr4_1:64047013-64047032 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr4_1:64047390-64047409 Msa0563610:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr4_1:64047391-64047410 Msa0563610:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr4_1:64047392-64047411 Msa0563610:intron 55.0%
! TTGGGAGTAGAGGGCTTTGG+AGG - chr4_1:64047466-64047485 Msa0563610:intron 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG - chr4_1:64047543-64047562 Msa0563610:intron 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG - chr4_1:64047544-64047563 Msa0563610:intron 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG - chr4_1:64047553-64047572 Msa0563610:intron 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG - chr4_1:64047554-64047573 Msa0563610:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG + chr4_1:64047391-64047410 None:intergenic 55.0%
CGATCCATGTAGCCGACCAA+CGG - chr4_1:64048437-64048456 Msa0563610:intron 55.0%
TTGACCGTTGGTCGGCTACA+TGG + chr4_1:64048444-64048463 None:intergenic 55.0%
! AGAGAAGCACAGTGGACAGG+TGG + chr4_1:64048665-64048684 None:intergenic 55.0%
! AGCAGAGAAGCACAGTGGAC+AGG + chr4_1:64048668-64048687 None:intergenic 55.0%
GGTGAAGGAAGAGTGGGAGT+GGG + chr4_1:64048843-64048862 None:intergenic 55.0%
GGGTTGTATGATACACCCGG+TGG - chr4_1:64049809-64049828 Msa0563610:CDS 55.0%
TCCCTCTTCCCAGTGGGACT+GGG - chr4_1:64044864-64044883 Msa0563610:CDS 60.0%
TCCCAGTCCCACTGGGAAGA+GGG + chr4_1:64044868-64044887 None:intergenic 60.0%
! TTGGTGCTCCCAGTCCCACT+GGG + chr4_1:64044875-64044894 None:intergenic 60.0%
! ATTGGTGCTCCCAGTCCCAC+TGG + chr4_1:64044876-64044895 None:intergenic 60.0%
GCCGGGTTGTTCGATACACC+TGG - chr4_1:64044976-64044995 Msa0563610:CDS 60.0%
CTTGCAATTTCCGCGCTGCC+AGG - chr4_1:64045278-64045297 Msa0563610:intron 60.0%
! TTTCCGCGCTGCCAGGTTGA+AGG - chr4_1:64045285-64045304 Msa0563610:intron 60.0%
CAACCTTCAACCTGGCAGCG+CGG + chr4_1:64045291-64045310 None:intergenic 60.0%
! CGCTGCCAGGTTGAAGGTTG+TGG - chr4_1:64045291-64045310 Msa0563610:intron 60.0%
! GCGGCCGTTCATGTTTTGCC+AGG + chr4_1:64046689-64046708 None:intergenic 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG - chr4_1:64047550-64047569 Msa0563610:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + chr4_1:64047743-64047762 None:intergenic 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG + chr4_1:64047744-64047763 None:intergenic 60.0%
GGAAGAGTGGGAGTGGGAGT+GGG + chr4_1:64048837-64048856 None:intergenic 60.0%
AGGAAGAGTGGGAGTGGGAG+TGG + chr4_1:64048838-64048857 None:intergenic 60.0%
GGGTGAAGGAAGAGTGGGAG+TGG + chr4_1:64048844-64048863 None:intergenic 60.0%
ACAATGTCCACCACGCTGCC+AGG - chr4_1:64050051-64050070 Msa0563610:intron 60.0%
CAACCTTCAACCTGGCAGCG+TGG + chr4_1:64045291-64045310 None:intergenic 60.0%
CTCCCTCTTCCCAGTGGGAC+TGG - chr4_1:64044863-64044882 Msa0563610:CDS 65.0%
CTCCCAGTCCCACTGGGAAG+AGG + chr4_1:64044869-64044888 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - chr4_1:64047396-64047415 Msa0563610:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - chr4_1:64047397-64047416 Msa0563610:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + chr4_1:64047730-64047749 None:intergenic 65.0%
GAAGGGAGGGGAGGGCTTTG+GGG + chr4_1:64047731-64047750 None:intergenic 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG + chr4_1:64047732-64047751 None:intergenic 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG + chr4_1:64047739-64047758 None:intergenic 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG + chr4_1:64047740-64047759 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG + chr4_1:64047745-64047764 None:intergenic 65.0%
TGGGAGTGGGAGTGGGAGTG+GGG + chr4_1:64048830-64048849 None:intergenic 65.0%
GTGGGAGTGGGAGTGGGAGT+GGG + chr4_1:64048831-64048850 None:intergenic 65.0%
AGTGGGAGTGGGAGTGGGAG+TGG + chr4_1:64048832-64048851 None:intergenic 65.0%
CCTTCAACCTGGCAGCGTGG+TGG + chr4_1:64050061-64050080 None:intergenic 65.0%
! CCACCACGCTGCCAGGTTGA+AGG - chr4_1:64050058-64050077 Msa0563610:intron 65.0%
GGGAGTTTGGAGGGGAGGGG+AGG - chr4_1:64047395-64047414 Msa0563610:intron 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG - chr4_1:64047400-64047419 Msa0563610:intron 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG - chr4_1:64047401-64047420 Msa0563610:intron 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG - chr4_1:64047407-64047426 Msa0563610:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG + chr4_1:64047725-64047744 None:intergenic 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG + chr4_1:64047729-64047748 None:intergenic 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG + chr4_1:64047733-64047752 None:intergenic 70.0%
GGGAGTGGGAGTGGGAGTGG+GGG + chr4_1:64048829-64048848 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 64044844 64051993 64044844 ID=Msa0563610;Name=Msa0563610
chr4_1 mRNA 64044844 64051993 64044844 ID=Msa0563610-mRNA-1;Parent=Msa0563610;Name=Msa0563610-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.42|0.25|1|1|1|8|0|720
chr4_1 exon 64051404 64051993 64051404 ID=Msa0563610-mRNA-1:exon:20420;Parent=Msa0563610-mRNA-1
chr4_1 exon 64051089 64051222 64051089 ID=Msa0563610-mRNA-1:exon:20419;Parent=Msa0563610-mRNA-1
chr4_1 exon 64050092 64050205 64050092 ID=Msa0563610-mRNA-1:exon:20418;Parent=Msa0563610-mRNA-1
chr4_1 exon 64049807 64049958 64049807 ID=Msa0563610-mRNA-1:exon:20417;Parent=Msa0563610-mRNA-1
chr4_1 exon 64046631 64047199 64046631 ID=Msa0563610-mRNA-1:exon:20416;Parent=Msa0563610-mRNA-1
chr4_1 exon 64046305 64046441 64046305 ID=Msa0563610-mRNA-1:exon:20415;Parent=Msa0563610-mRNA-1
chr4_1 exon 64045305 64045442 64045305 ID=Msa0563610-mRNA-1:exon:20414;Parent=Msa0563610-mRNA-1
chr4_1 exon 64044844 64045172 64044844 ID=Msa0563610-mRNA-1:exon:20413;Parent=Msa0563610-mRNA-1
chr4_1 CDS 64051404 64051993 64051404 ID=Msa0563610-mRNA-1:cds;Parent=Msa0563610-mRNA-1
chr4_1 CDS 64051089 64051222 64051089 ID=Msa0563610-mRNA-1:cds;Parent=Msa0563610-mRNA-1
chr4_1 CDS 64050092 64050205 64050092 ID=Msa0563610-mRNA-1:cds;Parent=Msa0563610-mRNA-1
chr4_1 CDS 64049807 64049958 64049807 ID=Msa0563610-mRNA-1:cds;Parent=Msa0563610-mRNA-1
chr4_1 CDS 64046631 64047199 64046631 ID=Msa0563610-mRNA-1:cds;Parent=Msa0563610-mRNA-1
chr4_1 CDS 64046305 64046441 64046305 ID=Msa0563610-mRNA-1:cds;Parent=Msa0563610-mRNA-1
chr4_1 CDS 64045305 64045442 64045305 ID=Msa0563610-mRNA-1:cds;Parent=Msa0563610-mRNA-1
chr4_1 CDS 64044844 64045172 64044844 ID=Msa0563610-mRNA-1:cds;Parent=Msa0563610-mRNA-1
Gene Sequence

>Msa0563610

ATGGACTTGAATGCAATATCTCCCTCTTCCCAGTGGGACTGGGAGCACCAATCATTCTTCCACACAAAAGCAACTGAAAATCCAAAATTACAACCACCAAGCTGGAGCATCAAACAAGACCGAGAAATCAATGCCGGGTTGTTCGATACACCTGGTGGAAGTGATATTTTTGGCTCTGCATCAAGGAGTTCAAAATCAGCTTCAAATAGTTCATCGTCAAATAGGGATAATAGCAAAACATGTATTTTTGCTTGTGGAAATTCTCATACACCAGAGCTTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTACTCGGAAAACGAGTGTACATTGAGGATGTATGTCCGAAAAGTAATTCCAAAAACCTATCTTTTTCAAGGGATTTTGCGTCATCTTTAAGTATTGGAAAGAAATGTAAGTTCAATAGTCAGAACTTGCAATTTCCGCGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCAGCGAAAGATTATCATCGCAAACGAAGAGTTTGTGAAAGTCATTCCAAATCTCCTATGGTGGTTATAGATGGTATGGAACGTCGATTTTGCCAGCAATGTGGCAGGTTCCACGATCTGTTTGAGTTCGATGAAAAGAAAAGAAGCTGCAGAGAACAACTTTCACGTCACAATGCAAGGCGACGTAAGCATCAGCCTGAAGCACTCCAATCAAGTCAATCAGTTTTGTCTTCACGCTGTGATGGAAAGCAACAGATGAGTCCATTTGCTAATTCAGAGACTGCTACAAATTTAGCCTGGCAAAACATGAACGGCCGCAAGCTCTTCCAAACAAAAGACAACACTAACACACAAGGTGTAGAAGATTTCATTACCGTTTCTGATACAAATGATAAACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACTAATCCATGGGATTCATATGCGACTAAATCCATGTCTCTAGAACATTCTAATCGTCCAACCAGTGCTGTTCAAGCCATTAGATTACCTAATTTCTATGCTTTTCTGATGGACTTGAATGCAATATCTCCCTCTTCACAGTTGGAGTTGGAATGGGATCACCTACCATTACTTAATACAAAAGCAACTGAAAACCCAAAATTACAACCACCAAACTGGAGTATGGAACTTGACCGAGAAATCAATTTCGGGTTGTATGATACACCCGGTGGAAGTGGTTCTTCTGGCTCTGAGCTAATTCATGGTTCAGCATTTAATCCACCAAACCTTTCCTGTGTATCTGGTGAACCATTGCTCAATCTAAGACTTGGTAAAAGGATGTATTTTGAGGAAGTTTGTCCAGAAAGTGATTCCAAAAATCTTTCTTTTTCAAGGGATCTCATGTCATCTTTAATTCTTGAAAAGAAATGCAAGTCCAATGGTCAGAACTTACAATGTCCACCACGCTGCCAGGTTGAAGGTTGTGCTCTTGATCTTTCATCCGCAAAAGATTATCATCGCAAACGAAGAGTTTGTGAAAGTCATGCCAAATCTCCCATGGTGGTTATTGATGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTGTTTGAGTTTGATGGAAAGAAGAAAAGCTGCAGACGACAACTTTCAAATCACAATGCAAGGCGCCGTATATATCATCGTCAAGCTGTCCAATCAAGCCAATCAGCTTTATCTTATTCACGCAGTGATGGGAAGCAACAGATGAGTCCATTTTCTAATTCCAAGACTGCTACAAATTTAGCCTGGCAAAACATGCACAACAGCAAGCTCCCCCAAGCAAAAGATTTTCCCTTGAAGCCTGCAAAAGACAACATTGACACACCAAGTTTAGAAGATTTCATGAACTTTTCTGATACAAATGCTACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCAGTGGGATTCATATGCGACTAAATCCATTTCTGAAGAACATTCTAATCGCTCGACCAGTGCTTTTCAAGCCATAACTCATGCAATGAATCAGCGCATTCCTCTTGCTTCATCAGAGCCATGGTGTAGTGATCATGATCAATATGTCAATTCCAACATGTGGATCTCAAACTCTGCAGATAGCAATCACTTTCAGAAATTTCAACTGTTCAGAGAACCTTATGAGTATGGTTTTCACCAGCTGGGTTAA
Protein sequence

>Msa0563610

MDLNAISPSSQWDWEHQSFFHTKATENPKLQPPSWSIKQDREINAGLFDTPGGSDIFGSASRSSKSASNSSSSNRDNSKTCIFACGNSHTPELSSVSGEPLLTLLGKRVYIEDVCPKSNSKNLSFSRDFASSLSIGKKCKFNSQNLQFPRCQVEGCGLDLSSAKDYHRKRRVCESHSKSPMVVIDGMERRFCQQCGRFHDLFEFDEKKRSCREQLSRHNARRRKHQPEALQSSQSVLSSRCDGKQQMSPFANSETATNLAWQNMNGRKLFQTKDNTNTQGVEDFITVSDTNDKQDFTCALSLLSTNPWDSYATKSMSLEHSNRPTSAVQAIRLPNFYAFLMDLNAISPSSQLELEWDHLPLLNTKATENPKLQPPNWSMELDREINFGLYDTPGGSGSSGSELIHGSAFNPPNLSCVSGEPLLNLRLGKRMYFEEVCPESDSKNLSFSRDLMSSLILEKKCKSNGQNLQCPPRCQVEGCALDLSSAKDYHRKRRVCESHAKSPMVVIDGLERRFCQQCSRFHDLFEFDGKKKSCRRQLSNHNARRRIYHRQAVQSSQSALSYSRSDGKQQMSPFSNSKTATNLAWQNMHNSKLPQAKDFPLKPAKDNIDTPSLEDFMNFSDTNATQDFTCALSLLSTNQWDSYATKSISEEHSNRSTSAFQAITHAMNQRIPLASSEPWCSDHDQYVNSNMWISNSADSNHFQKFQLFREPYEYGFHQLG*