AlfalfaGEDB | Msa0563920

M. sativa cultivar zhongmu-4 / Msa0563920

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563920	KEH20638.1	66.197	213	61	2	3	206	179	389	2.57e-88	275

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563920	A0A072TUV6	66.197	213	61	2	3	206	179	389	1.23e-88	275

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TFs/TRs:

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Gene ID	Type	Classification
Msa0563920	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563920	MtrunA17_Chr8g0377801	66.197	213	61	2	3	206	179	389	3.16e-92	275
Msa0563920	MtrunA17_Chr8g0377781	67.476	206	60	2	4	202	167	372	4.75e-87	261
Msa0563920	MtrunA17_Chr2g0296191	33.117	154	103	0	53	206	359	512	1.94e-19	85.9
Msa0563920	MtrunA17_Chr2g0296191	34.228	149	98	0	53	201	846	994	7.47e-18	81.3
Msa0563920	MtrunA17_Chr2g0295731	30.323	155	108	0	51	205	224	378	2.99e-19	84.7
Msa0563920	MtrunA17_Chr2g0296211	32.051	156	106	0	49	204	203	358	5.27e-19	84.0
Msa0563920	MtrunA17_Chr2g0296251	33.553	152	101	0	53	204	247	398	1.20e-18	82.8
Msa0563920	MtrunA17_Chr2g0296701	32.432	148	100	0	57	204	9	156	1.30e-18	79.3
Msa0563920	MtrunA17_Chr2g0296551	33.784	148	98	0	57	204	37	184	3.43e-18	79.0
Msa0563920	MtrunA17_Chr2g0315731	31.361	169	115	1	37	204	235	403	5.59e-18	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563920	AT5G64950.1	36.866	217	122	4	5	206	164	380	1.44e-34	126
Msa0563920	AT1G21150.3	28.977	176	115	3	26	198	179	347	4.00e-18	81.6
Msa0563920	AT1G21150.1	28.977	176	115	3	26	198	215	383	5.33e-18	81.6
Msa0563920	AT1G21150.2	28.977	176	115	3	26	198	279	447	6.77e-18	81.6
Msa0563920	AT5G07900.1	30.000	150	104	1	53	201	250	399	4.24e-17	79.0
Msa0563920	AT1G61990.2	28.729	181	91	3	56	198	225	405	8.32e-16	75.5
Msa0563920	AT1G61990.1	28.729	181	91	3	56	198	225	405	8.32e-16	75.5
Msa0563920	AT1G62010.1	26.471	170	89	3	56	189	216	385	2.27e-11	62.4
Msa0563920	AT1G61970.2	32.727	110	70	2	82	187	290	399	2.80e-11	62.4
Msa0563920	AT1G61970.7	32.727	110	70	2	82	187	290	399	2.80e-11	62.4

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Find 28 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCCAAATTTGCTT+AGG	0.354562	4_1:-64376766	Msa0563920:CDS
AAAGGTTCCAAATTTGCTTA+GGG	0.440166	4_1:-64376765	Msa0563920:CDS
AAAGTTTAAAGAAAATGCAG+AGG	0.668498	4_1:-64376510	Msa0563920:CDS
AACAATGCCACAACTCTCTA+AGG	0.240848	4_1:+64377018	None:intergenic
ACAATGCCACAACTCTCTAA+GGG	0.616141	4_1:+64377019	None:intergenic
AGAGAGTTGTGGCATTGTTG+GGG	0.519144	4_1:-64377014	Msa0563920:CDS
ATCACAAAATCTATGTAAGA+AGG	0.510006	4_1:-64376594	Msa0563920:CDS
ATGCTATACATCAAAATCAG+AGG	0.630674	4_1:+64376662	None:intergenic
CAAAGTCAGCATTGGTTACT+CGG	0.409355	4_1:-64376685	Msa0563920:CDS
CGAGTAACCAATGCTGACTT+TGG	0.457799	4_1:+64376686	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTTTCTAATACGAGATTG+TGG	+	chr4_1:64376611-64376630	None:intergenic	30.0%
GTTTGAGCCATAAAACATTT+AGG	-	chr4_1:64376705-64376724	Msa0563920:CDS	30.0%
ATGCTATACATCAAAATCAG+AGG	+	chr4_1:64376896-64376915	None:intergenic	30.0%
ATCTGAAAAACTCTAAATCG+AGG	+	chr4_1:64376935-64376954	None:intergenic	30.0%
GAGCTTGCAAATGTTCAAAA+AGG	-	chr4_1:64376772-64376791	Msa0563920:CDS	35.0%
TCTGATACCCTAAGCAAATT+TGG	+	chr4_1:64376800-64376819	None:intergenic	35.0%
GGTATCAGAGAAGAAGATAA+AGG	-	chr4_1:64376811-64376830	Msa0563920:CDS	35.0%
TCAGAGAAGAAGATAAAGGT+TGG	-	chr4_1:64376815-64376834	Msa0563920:CDS	35.0%
GCAACAAATGTTTGGTACAC+TGG	+	chr4_1:64376517-64376536	None:intergenic	40.0%
ACAATGCCACAACTCTCTAA+GGG	+	chr4_1:64376539-64376558	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	64376475	64377102	64376475	ID=Msa0563920;Name=Msa0563920
chr4_1	mRNA	64376475	64377102	64376475	ID=Msa0563920-mRNA-1;Parent=Msa0563920;Name=Msa0563920-mRNA-1;_AED=0.42;_eAED=0.43;_QI=0\|0\|0\|1\|0\|0\|2\|0\|206
chr4_1	exon	64376960	64377102	64376960	ID=Msa0563920-mRNA-1:exon:20607;Parent=Msa0563920-mRNA-1
chr4_1	exon	64376475	64376952	64376475	ID=Msa0563920-mRNA-1:exon:20606;Parent=Msa0563920-mRNA-1
chr4_1	CDS	64376960	64377102	64376960	ID=Msa0563920-mRNA-1:cds;Parent=Msa0563920-mRNA-1
chr4_1	CDS	64376475	64376952	64376475	ID=Msa0563920-mRNA-1:cds;Parent=Msa0563920-mRNA-1

Gene Sequence

>Msa0563920

ATGAGAAATCAAGTTTTGAGCTACTGTGGCTGGCTACTACCAGTGTACCAAACATTTGTTGCCCTTAGAGAGTTGTGGCATTGTTGGGGATCAGGTTTTGATTTTAATCAAACATTCAAGACTTTTGACTGCACCACAATCTCAAACTATGTTTTGCAAGCTGAAAAATTGGGTTTCCATCAAAATTCAAGAATGCTTGTTCATGCGCTTCATACATTATGTTGTTTGAGCCATAAAACATTTAGGAAAAAGCTTGATTTCATTCAGCATTTTGGGTTTTCTAAAGATGAGAGCTTGCAAATGTTCAAAAAGGTTCCAAATTTGCTTAGGGTATCAGAGAAGAAGATAAAGGTTGGAATTAAGTTCTTCTTAGATACAGTTATGCTGCCAAAGTCAGCATTGGTTACTCGGCCTCTGATTTTGATGTATAGCATGGAGGATCGAGTGTTTCCTCGATTTAGAGTTTTTCAGATTTTGAAATCACAAAATCTATGTAAGAAGGTTCCAAGCTTTGTTTATGTGTTAAATTTATCTGAGGACACGTTCTTGGACAAGTTTATACCAAAGTTTAAAGAAAATGCAGAGGCATTATTGATAGCTTACAAGGAGCGTTGTCTATAA

Protein sequence

>Msa0563920

MRNQVLSYCGWLLPVYQTFVALRELWHCWGSGFDFNQTFKTFDCTTISNYVLQAEKLGFHQNSRMLVHALHTLCCLSHKTFRKKLDFIQHFGFSKDESLQMFKKVPNLLRVSEKKIKVGIKFFLDTVMLPKSALVTRPLILMYSMEDRVFPRFRVFQILKSQNLCKKVPSFVYVLNLSEDTFLDKFIPKFKENAEALLIAYKERCL*