Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564790 | AET04250.1 | 93.607 | 438 | 11 | 5 | 1 | 433 | 1 | 426 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564790 | sp|Q700D9|MYBF_ARATH | 55.435 | 92 | 32 | 1 | 86 | 177 | 3 | 85 | 5.61e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564790 | G7LJE5 | 93.607 | 438 | 11 | 5 | 1 | 433 | 1 | 426 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0564790 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564790 | MtrunA17_Chr8g0379121 | 93.607 | 438 | 11 | 5 | 1 | 433 | 3 | 428 | 0.0 | 818 |
| Msa0564790 | MtrunA17_Chr2g0283951 | 47.568 | 370 | 112 | 11 | 86 | 433 | 69 | 378 | 2.02e-88 | 273 |
| Msa0564790 | MtrunA17_Chr2g0320231 | 42.164 | 268 | 115 | 9 | 44 | 308 | 32 | 262 | 1.47e-41 | 151 |
| Msa0564790 | MtrunA17_Chr7g0243081 | 55.118 | 127 | 46 | 2 | 54 | 180 | 21 | 136 | 3.92e-37 | 139 |
| Msa0564790 | MtrunA17_Chr2g0288601 | 77.966 | 59 | 13 | 0 | 98 | 156 | 63 | 121 | 1.01e-27 | 107 |
| Msa0564790 | MtrunA17_Chr1g0162931 | 60.714 | 84 | 24 | 1 | 94 | 177 | 6 | 80 | 5.01e-27 | 109 |
| Msa0564790 | MtrunA17_Chr1g0210911 | 56.044 | 91 | 26 | 2 | 81 | 171 | 2 | 78 | 1.42e-25 | 106 |
| Msa0564790 | MtrunA17_Chr3g0095611 | 49.462 | 93 | 33 | 3 | 91 | 182 | 4 | 83 | 6.69e-22 | 93.2 |
| Msa0564790 | MtrunA17_Chr1g0154261 | 55.172 | 87 | 27 | 3 | 91 | 176 | 113 | 188 | 7.91e-20 | 89.4 |
| Msa0564790 | MtrunA17_Chr6g0479431 | 50.588 | 85 | 19 | 2 | 101 | 171 | 183 | 258 | 2.57e-17 | 83.2 |
| Msa0564790 | MtrunA17_Chr7g0261911 | 70.000 | 50 | 15 | 0 | 107 | 156 | 263 | 312 | 5.23e-17 | 83.2 |
| Msa0564790 | MtrunA17_Chr8g0366281 | 55.882 | 68 | 21 | 1 | 105 | 172 | 172 | 230 | 1.38e-16 | 80.9 |
| Msa0564790 | MtrunA17_Chr5g0410741 | 56.164 | 73 | 22 | 2 | 105 | 176 | 218 | 281 | 1.42e-16 | 81.3 |
| Msa0564790 | MtrunA17_Chr1g0190301 | 68.000 | 50 | 16 | 0 | 107 | 156 | 176 | 225 | 1.94e-16 | 80.9 |
| Msa0564790 | MtrunA17_Chr7g0274471 | 68.000 | 50 | 16 | 0 | 107 | 156 | 219 | 268 | 2.10e-16 | 80.9 |
| Msa0564790 | MtrunA17_Chr3g0109981 | 58.209 | 67 | 19 | 1 | 105 | 171 | 273 | 330 | 2.34e-16 | 80.9 |
| Msa0564790 | MtrunA17_Chr6g0461641 | 62.000 | 50 | 19 | 0 | 107 | 156 | 43 | 92 | 4.42e-15 | 76.6 |
| Msa0564790 | MtrunA17_Chr5g0409731 | 50.725 | 69 | 27 | 1 | 95 | 156 | 7 | 75 | 8.12e-15 | 74.7 |
| Msa0564790 | MtrunA17_Chr7g0258551 | 58.182 | 55 | 23 | 0 | 102 | 156 | 208 | 262 | 1.40e-14 | 75.1 |
| Msa0564790 | MtrunA17_Chr2g0321461 | 60.000 | 50 | 20 | 0 | 107 | 156 | 46 | 95 | 2.02e-14 | 74.7 |
| Msa0564790 | MtrunA17_Chr7g0254981 | 65.306 | 49 | 17 | 0 | 108 | 156 | 52 | 100 | 4.54e-14 | 72.4 |
| Msa0564790 | MtrunA17_Chr1g0175091 | 63.265 | 49 | 18 | 0 | 108 | 156 | 260 | 308 | 4.69e-14 | 73.6 |
| Msa0564790 | MtrunA17_Chr1g0175081 | 57.143 | 49 | 21 | 0 | 108 | 156 | 24 | 72 | 8.41e-14 | 67.4 |
| Msa0564790 | MtrunA17_Chr1g0197171 | 60.000 | 50 | 20 | 0 | 107 | 156 | 45 | 94 | 8.90e-14 | 71.6 |
| Msa0564790 | MtrunA17_Chr2g0290991 | 60.000 | 50 | 20 | 0 | 107 | 156 | 40 | 89 | 1.14e-13 | 71.6 |
| Msa0564790 | MtrunA17_Chr2g0291021 | 65.306 | 49 | 17 | 0 | 108 | 156 | 51 | 99 | 1.81e-13 | 71.2 |
| Msa0564790 | MtrunA17_Chr5g0417521 | 52.000 | 50 | 24 | 0 | 107 | 156 | 16 | 65 | 2.32e-13 | 71.2 |
| Msa0564790 | MtrunA17_Chr8g0356501 | 56.000 | 50 | 22 | 0 | 107 | 156 | 38 | 87 | 2.86e-13 | 70.9 |
| Msa0564790 | MtrunA17_Chr2g0310011 | 56.000 | 50 | 22 | 0 | 107 | 156 | 36 | 85 | 6.70e-13 | 69.7 |
| Msa0564790 | MtrunA17_Chr4g0042451 | 52.000 | 50 | 24 | 0 | 107 | 156 | 18 | 67 | 6.49e-12 | 66.6 |
| Msa0564790 | MtrunA17_Chr7g0258531 | 61.224 | 49 | 19 | 0 | 108 | 156 | 215 | 263 | 1.28e-11 | 65.9 |
| Msa0564790 | MtrunA17_Chr1g0175071 | 57.143 | 49 | 21 | 0 | 108 | 156 | 179 | 227 | 1.54e-11 | 65.1 |
| Msa0564790 | MtrunA17_Chr7g0242521 | 59.615 | 52 | 18 | 1 | 108 | 156 | 15 | 66 | 4.97e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564790 | AT2G38300.1 | 66.667 | 87 | 20 | 1 | 94 | 180 | 42 | 119 | 1.01e-31 | 124 |
| Msa0564790 | AT2G42660.1 | 70.513 | 78 | 14 | 1 | 96 | 173 | 40 | 108 | 2.02e-29 | 115 |
| Msa0564790 | AT2G40260.1 | 62.500 | 104 | 25 | 3 | 76 | 174 | 47 | 141 | 1.51e-28 | 116 |
| Msa0564790 | AT4G04605.1 | 57.292 | 96 | 32 | 1 | 98 | 193 | 6 | 92 | 2.40e-28 | 111 |
| Msa0564790 | AT2G02060.2 | 64.103 | 78 | 28 | 0 | 79 | 156 | 2 | 79 | 2.14e-26 | 107 |
| Msa0564790 | AT2G02060.1 | 64.103 | 78 | 28 | 0 | 79 | 156 | 2 | 79 | 2.14e-26 | 107 |
| Msa0564790 | AT1G14600.1 | 55.435 | 92 | 32 | 1 | 86 | 177 | 3 | 85 | 5.70e-26 | 106 |
| Msa0564790 | AT4G04580.1 | 52.564 | 78 | 28 | 1 | 98 | 175 | 6 | 74 | 6.92e-19 | 84.0 |
| Msa0564790 | AT5G42630.2 | 51.087 | 92 | 30 | 3 | 85 | 176 | 90 | 166 | 1.42e-18 | 84.7 |
| Msa0564790 | AT5G42630.1 | 51.087 | 92 | 30 | 3 | 85 | 176 | 90 | 166 | 1.89e-18 | 85.5 |
| Msa0564790 | AT4G04555.1 | 52.564 | 78 | 28 | 1 | 98 | 175 | 6 | 74 | 3.32e-18 | 80.1 |
| Msa0564790 | AT1G32240.2 | 58.209 | 67 | 19 | 1 | 105 | 171 | 212 | 269 | 1.69e-16 | 81.3 |
| Msa0564790 | AT1G32240.1 | 58.209 | 67 | 19 | 1 | 105 | 171 | 212 | 269 | 2.09e-16 | 80.9 |
| Msa0564790 | AT5G16560.1 | 58.209 | 67 | 19 | 1 | 105 | 171 | 218 | 275 | 2.69e-16 | 80.9 |
| Msa0564790 | AT4G17695.1 | 55.714 | 70 | 22 | 1 | 105 | 174 | 163 | 223 | 2.90e-16 | 79.7 |
| Msa0564790 | AT5G45580.2 | 55.738 | 61 | 27 | 0 | 96 | 156 | 13 | 73 | 1.30e-15 | 77.4 |
| Msa0564790 | AT4G28610.1 | 67.347 | 49 | 16 | 0 | 108 | 156 | 227 | 275 | 2.69e-15 | 77.8 |
| Msa0564790 | AT5G45580.1 | 58.182 | 55 | 23 | 0 | 102 | 156 | 3 | 57 | 4.07e-15 | 75.5 |
| Msa0564790 | AT3G04450.3 | 63.265 | 49 | 18 | 0 | 108 | 156 | 240 | 288 | 4.28e-15 | 76.3 |
| Msa0564790 | AT5G29000.4 | 59.677 | 62 | 24 | 1 | 95 | 156 | 221 | 281 | 4.32e-15 | 76.3 |
| Msa0564790 | AT5G29000.1 | 67.347 | 49 | 16 | 0 | 108 | 156 | 190 | 238 | 5.13e-15 | 76.6 |
| Msa0564790 | AT5G29000.3 | 67.347 | 49 | 16 | 0 | 108 | 156 | 190 | 238 | 5.13e-15 | 76.6 |
| Msa0564790 | AT5G29000.2 | 61.818 | 55 | 21 | 0 | 102 | 156 | 227 | 281 | 5.83e-15 | 76.6 |
| Msa0564790 | AT3G04450.4 | 63.265 | 49 | 18 | 0 | 108 | 156 | 200 | 248 | 5.93e-15 | 76.6 |
| Msa0564790 | AT3G04450.2 | 63.265 | 49 | 18 | 0 | 108 | 156 | 200 | 248 | 5.93e-15 | 76.6 |
| Msa0564790 | AT3G04450.1 | 63.265 | 49 | 18 | 0 | 108 | 156 | 240 | 288 | 6.24e-15 | 77.0 |
| Msa0564790 | AT3G13040.3 | 67.347 | 49 | 16 | 0 | 108 | 156 | 243 | 291 | 1.47e-14 | 75.9 |
| Msa0564790 | AT3G13040.1 | 67.347 | 49 | 16 | 0 | 108 | 156 | 243 | 291 | 1.47e-14 | 75.9 |
| Msa0564790 | AT3G13040.2 | 67.347 | 49 | 16 | 0 | 108 | 156 | 243 | 291 | 1.47e-14 | 75.9 |
| Msa0564790 | AT3G04030.1 | 56.000 | 50 | 22 | 0 | 107 | 156 | 46 | 95 | 4.53e-14 | 73.9 |
| Msa0564790 | AT3G04030.3 | 56.000 | 50 | 22 | 0 | 107 | 156 | 46 | 95 | 5.11e-14 | 73.9 |
| Msa0564790 | AT3G12730.1 | 58.000 | 50 | 21 | 0 | 107 | 156 | 24 | 73 | 7.15e-14 | 71.2 |
| Msa0564790 | AT5G18240.2 | 56.000 | 50 | 22 | 0 | 107 | 156 | 46 | 95 | 9.56e-14 | 73.2 |
| Msa0564790 | AT5G18240.3 | 56.000 | 50 | 22 | 0 | 107 | 156 | 46 | 95 | 9.56e-14 | 73.2 |
| Msa0564790 | AT5G18240.1 | 56.000 | 50 | 22 | 0 | 107 | 156 | 46 | 95 | 1.02e-13 | 72.8 |
| Msa0564790 | AT5G18240.4 | 56.000 | 50 | 22 | 0 | 107 | 156 | 46 | 95 | 1.02e-13 | 72.8 |
| Msa0564790 | AT5G18240.5 | 56.000 | 50 | 22 | 0 | 107 | 156 | 46 | 95 | 1.04e-13 | 72.8 |
| Msa0564790 | AT2G01060.1 | 65.306 | 49 | 17 | 0 | 108 | 156 | 17 | 65 | 1.25e-13 | 71.6 |
| Msa0564790 | AT2G06020.1 | 38.710 | 93 | 57 | 0 | 64 | 156 | 44 | 136 | 3.21e-13 | 70.5 |
| Msa0564790 | AT4G13640.2 | 56.000 | 50 | 22 | 0 | 107 | 156 | 38 | 87 | 3.23e-13 | 70.5 |
| Msa0564790 | AT3G24120.2 | 56.000 | 50 | 22 | 0 | 107 | 156 | 42 | 91 | 3.39e-13 | 70.5 |
| Msa0564790 | AT4G13640.1 | 56.000 | 50 | 22 | 0 | 107 | 156 | 38 | 87 | 3.43e-13 | 70.5 |
| Msa0564790 | AT3G24120.1 | 56.000 | 50 | 22 | 0 | 107 | 156 | 42 | 91 | 3.51e-13 | 70.5 |
| Msa0564790 | AT1G69580.1 | 56.000 | 50 | 22 | 0 | 107 | 156 | 35 | 84 | 5.86e-13 | 70.1 |
| Msa0564790 | AT1G69580.2 | 56.000 | 50 | 22 | 0 | 107 | 156 | 35 | 84 | 5.90e-13 | 70.1 |
| Msa0564790 | AT1G79430.2 | 56.000 | 50 | 22 | 0 | 107 | 156 | 35 | 84 | 6.08e-13 | 70.1 |
| Msa0564790 | AT5G06800.3 | 59.184 | 49 | 20 | 0 | 108 | 156 | 194 | 242 | 9.03e-13 | 68.9 |
| Msa0564790 | AT2G20400.1 | 48.101 | 79 | 32 | 1 | 108 | 186 | 233 | 302 | 1.27e-12 | 69.7 |
| Msa0564790 | AT2G20400.2 | 63.265 | 49 | 18 | 0 | 108 | 156 | 233 | 281 | 1.57e-12 | 69.3 |
| Msa0564790 | AT5G06800.1 | 59.184 | 49 | 20 | 0 | 108 | 156 | 194 | 242 | 2.87e-12 | 68.2 |
| Msa0564790 | AT5G06800.2 | 59.184 | 49 | 20 | 0 | 108 | 156 | 194 | 242 | 2.97e-12 | 68.2 |
| Msa0564790 | AT3G04030.2 | 54.000 | 50 | 22 | 1 | 107 | 156 | 46 | 94 | 1.18e-11 | 66.6 |
Find 101 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCTTCCTTGTGTATTTA+TGG | 0.141395 | 4_1:+65528153 | None:intergenic |
| CATCAGTTGAAGCACCAATT+TGG | 0.203737 | 4_1:+65530181 | None:intergenic |
| GATGATTTAAGTACCATTCT+TGG | 0.272460 | 4_1:+65528227 | None:intergenic |
| TTTGGTTTGGAGTGTGTTAT+TGG | 0.285452 | 4_1:+65532192 | None:intergenic |
| CTTAAACTCAGTTGCAAATC+AGG | 0.297702 | 4_1:+65527530 | None:intergenic |
| ATTATTGTTCATGATATCTA+AGG | 0.299338 | 4_1:+65528027 | None:intergenic |
| ATCAGTTGAAGCACCAATTT+GGG | 0.338016 | 4_1:+65530182 | None:intergenic |
| TATAGTTTACCTTGAATTGA+TGG | 0.341831 | 4_1:+65528322 | None:intergenic |
| GAATCAGCAGCTTCAAGTTA+AGG | 0.347972 | 4_1:-65528119 | Msa0564790:CDS |
| GAGTTTCGTGTCGATTTCTT+TGG | 0.349363 | 4_1:+65527460 | None:intergenic |
| GTAAACTTGATAGGTAGTTT+TGG | 0.349834 | 4_1:+65532174 | None:intergenic |
| TGTGTATTTATGGCTGTTGA+TGG | 0.356390 | 4_1:+65528163 | None:intergenic |
| TGCAGGAGCAACACCCAAAT+TGG | 0.368712 | 4_1:-65530195 | Msa0564790:intron |
| CACAGATCAACCCATGAATT+AGG | 0.371135 | 4_1:-65528509 | Msa0564790:CDS |
| TCATGAACAATAATCCATAT+TGG | 0.378085 | 4_1:-65528018 | Msa0564790:CDS |
| CATGAGAATGAGAGGAGTAC+TGG | 0.386029 | 4_1:-65530758 | Msa0564790:CDS |
| AGAAATTGGCTTGGTCTCAT+AGG | 0.398094 | 4_1:+65528070 | None:intergenic |
| ATGTTACCTTAATCCGAAAC+GGG | 0.404770 | 4_1:+65527834 | None:intergenic |
| GGTACTTAAATCATCAATCT+TGG | 0.408196 | 4_1:-65528219 | Msa0564790:CDS |
| TCATGTCAAGAGTCACTTGC+AGG | 0.410009 | 4_1:-65530135 | Msa0564790:intron |
| GAAGGAAATGTAAACTTGAT+AGG | 0.411065 | 4_1:+65532165 | None:intergenic |
| GTGATAAGGATGAGGGATGC+AGG | 0.412034 | 4_1:+65528366 | None:intergenic |
| AAGCTGCTGATTCAAAGTTA+TGG | 0.422753 | 4_1:+65528129 | None:intergenic |
| TTCTCTTCAAGAAATTGGCT+TGG | 0.425569 | 4_1:+65528061 | None:intergenic |
| AGACCCGCTGAGGTGAGCTT+TGG | 0.428693 | 4_1:-65527941 | Msa0564790:CDS |
| GCAGGGTGATCCGTGTCCAC+CGG | 0.430658 | 4_1:-65529946 | Msa0564790:intron |
| TCAAATGAAAGAAGAAGAAA+TGG | 0.432967 | 4_1:-65530512 | Msa0564790:CDS |
| GAGAAATGGAACCTAATTCA+TGG | 0.443905 | 4_1:+65528498 | None:intergenic |
| ATGCATGCTGTTGAAAGGCT+TGG | 0.446279 | 4_1:-65530422 | Msa0564790:CDS |
| CCTTTCAACAGCATGCATAA+AGG | 0.447782 | 4_1:+65530427 | None:intergenic |
| AGCAAGAAACTTGACGAGGC+TGG | 0.448557 | 4_1:-65529444 | Msa0564790:CDS |
| TTTCCAAAGCTCACCTCAGC+GGG | 0.450601 | 4_1:+65527938 | None:intergenic |
| TATATATACACTTACTCTCT+TGG | 0.459482 | 4_1:+65530396 | None:intergenic |
| GGACACATCTTCATCTTGAA+TGG | 0.461249 | 4_1:-65532025 | Msa0564790:intron |
| AATGTTACCTTAATCCGAAA+CGG | 0.467426 | 4_1:+65527833 | None:intergenic |
| CAGGGTGATCCGTGTCCACC+GGG | 0.468752 | 4_1:-65529945 | Msa0564790:CDS |
| ATGGGCTACATGGTGAGAAA+TGG | 0.471248 | 4_1:+65528484 | None:intergenic |
| ATAAAGGAATGATGAAGATC+AGG | 0.473128 | 4_1:+65530443 | None:intergenic |
| CAACATTTCAAGATGGCAAA+TGG | 0.480821 | 4_1:-65528443 | Msa0564790:CDS |
| CCTCGTCAAGTTTCTTGCTC+CGG | 0.482077 | 4_1:+65529448 | None:intergenic |
| ACATGCTGAGGACACTTCAA+TGG | 0.484215 | 4_1:-65530723 | Msa0564790:CDS |
| ATTCAAAGCCCATCAATTCA+AGG | 0.485522 | 4_1:-65528331 | Msa0564790:intron |
| CCTCGATTATTTCTCTTCCA+AGG | 0.489008 | 4_1:+65532047 | None:intergenic |
| ATAGTTTACCTTGAATTGAT+GGG | 0.489818 | 4_1:+65528323 | None:intergenic |
| GATCAAAGATGCCTAGGCTT+AGG | 0.490445 | 4_1:-65530472 | Msa0564790:CDS |
| CCTTTATGCATGCTGTTGAA+AGG | 0.505034 | 4_1:-65530427 | Msa0564790:CDS |
| AATTCATTGCTCATGTAGCT+TGG | 0.505208 | 4_1:+65528193 | None:intergenic |
| AATTTCTTGAAGAGAAAAGA+TGG | 0.506639 | 4_1:-65528054 | Msa0564790:CDS |
| TCATGGGTTGATCTGTGTGT+TGG | 0.507129 | 4_1:+65528515 | None:intergenic |
| CAAAGATGCCTAGGCTTAGG+TGG | 0.512420 | 4_1:-65530469 | Msa0564790:CDS |
| AGCTTCTTCATTCAAATCAA+AGG | 0.526882 | 4_1:+65530676 | None:intergenic |
| ATGAGAATGAGAGGAGTACT+GGG | 0.527704 | 4_1:-65530757 | Msa0564790:CDS |
| TTGGAAACAACACAAGAAGC+AGG | 0.535242 | 4_1:-65527922 | Msa0564790:CDS |
| CATGCTGAGGACACTTCAAT+GGG | 0.544595 | 4_1:-65530722 | Msa0564790:CDS |
| ATGAGAAACATGAGAATGAG+AGG | 0.550261 | 4_1:-65530766 | Msa0564790:CDS |
| ATGTTAGATCAAAGATGCCT+AGG | 0.555843 | 4_1:-65530478 | Msa0564790:CDS |
| ATGTGAATGTGATAAGGATG+AGG | 0.556397 | 4_1:+65528358 | None:intergenic |
| TTGTTAATCAATATGTCAGA+TGG | 0.557920 | 4_1:-65530791 | Msa0564790:exon |
| ATGTGAATGTGAATGTGATA+AGG | 0.557968 | 4_1:+65528352 | None:intergenic |
| TTAGTAAAGGATGATGATGA+AGG | 0.558622 | 4_1:-65530566 | Msa0564790:CDS |
| CATGCTGTTGAAAGGCTTGG+AGG | 0.559982 | 4_1:-65530419 | Msa0564790:CDS |
| GATGAGGTATCATGGACTGA+TGG | 0.560341 | 4_1:+65528465 | None:intergenic |
| GAAATGTTGATGAGGTATCA+TGG | 0.573003 | 4_1:+65528457 | None:intergenic |
| TGTGGAAATTATAACTGTGC+TGG | 0.573367 | 4_1:+65528393 | None:intergenic |
| ATTGCTGAAAGACAAACAAT+GGG | 0.582280 | 4_1:-65527555 | Msa0564790:CDS |
| TTGAACTATTAAAATCGTTG+TGG | 0.582932 | 4_1:+65527873 | None:intergenic |
| CATTGCTGAAAGACAAACAA+TGG | 0.583238 | 4_1:-65527556 | Msa0564790:CDS |
| AGAAATGGAACCTAATTCAT+GGG | 0.583302 | 4_1:+65528499 | None:intergenic |
| GGGTGATCCGTGTCCACCGG+GGG | 0.584092 | 4_1:-65529943 | Msa0564790:CDS |
| CTGAGTTTAAGTCAAACAAA+CGG | 0.584680 | 4_1:-65527518 | Msa0564790:CDS |
| TCATGGACTGATGGGCTACA+TGG | 0.586690 | 4_1:+65528474 | None:intergenic |
| AACAACGATGGCAAGAGTGA+TGG | 0.587021 | 4_1:-65527494 | Msa0564790:CDS |
| TCAGGAGTCCACCTAAGCCT+AGG | 0.589432 | 4_1:+65530461 | None:intergenic |
| ACCTCATCAACATTTCAAGA+TGG | 0.592000 | 4_1:-65528450 | Msa0564790:CDS |
| TTATTGTTCATGATATCTAA+GGG | 0.593086 | 4_1:+65528028 | None:intergenic |
| ATGAGGGATGCAGGAGACTG+TGG | 0.594666 | 4_1:+65528375 | None:intergenic |
| CATTTCAAGATGGCAAATGG+TGG | 0.597539 | 4_1:-65528440 | Msa0564790:CDS |
| TGTGATCATGAATTAGTGAA+TGG | 0.597628 | 4_1:-65530608 | Msa0564790:CDS |
| TGTGAATGTGATAAGGATGA+GGG | 0.599304 | 4_1:+65528359 | None:intergenic |
| AACCTACAAACATTATCCCC+CGG | 0.605303 | 4_1:+65529927 | None:intergenic |
| AAACTTGACGAGGCTGGACA+AGG | 0.608837 | 4_1:-65529438 | Msa0564790:intron |
| ATGAGGTATCATGGACTGAT+GGG | 0.611244 | 4_1:+65528466 | None:intergenic |
| GCTTCAAGTTAAGGATACTA+CGG | 0.615847 | 4_1:-65528110 | Msa0564790:CDS |
| TGGTCTCATAGGAGCAAGTG+TGG | 0.621257 | 4_1:+65528081 | None:intergenic |
| TGATGATGAGAAATTAGTAA+AGG | 0.628164 | 4_1:-65530579 | Msa0564790:CDS |
| GAAGAGTGAAGAACATGCTG+AGG | 0.635213 | 4_1:-65530735 | Msa0564790:CDS |
| GCCATCTTGAAATGTTGATG+AGG | 0.640047 | 4_1:+65528449 | None:intergenic |
| GTTTCCAAAGCTCACCTCAG+CGG | 0.640457 | 4_1:+65527937 | None:intergenic |
| CTTGGAAGAGAAATAATCGA+GGG | 0.648085 | 4_1:-65532046 | Msa0564790:five_prime_UTR |
| TGGAAACAACACAAGAAGCA+GGG | 0.655021 | 4_1:-65527921 | Msa0564790:CDS |
| CAAACAAACGGCAACAACGA+TGG | 0.660383 | 4_1:-65527506 | Msa0564790:CDS |
| CTTCAACTGATGAATGTGAG+AGG | 0.660411 | 4_1:-65530170 | Msa0564790:CDS |
| TAACAATGAAGAGAATGATG+AGG | 0.666404 | 4_1:-65530633 | Msa0564790:CDS |
| CCTTGGAAGAGAAATAATCG+AGG | 0.681331 | 4_1:-65532047 | Msa0564790:five_prime_UTR |
| AACATCACTTAGACCCGCTG+AGG | 0.687013 | 4_1:-65527951 | Msa0564790:CDS |
| TTGTTCATGATATCTAAGGG+AGG | 0.692055 | 4_1:+65528031 | None:intergenic |
| AGGGTGATCCGTGTCCACCG+GGG | 0.695098 | 4_1:-65529944 | Msa0564790:CDS |
| TGTTACCTTAATCCGAAACG+GGG | 0.697195 | 4_1:+65527835 | None:intergenic |
| TCAACAGCCATAAATACACA+AGG | 0.708092 | 4_1:-65528160 | Msa0564790:CDS |
| CCGGAGCAAGAAACTTGACG+AGG | 0.718472 | 4_1:-65529448 | Msa0564790:CDS |
| GTTACCTTAATCCGAAACGG+GGG | 0.718704 | 4_1:+65527836 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATATTAAAATAAAA+GGG | - | chr4_1:65529579-65529598 | Msa0564790:intron | 0.0% |
| !!! | CTTTAAAACTTTTAAAATAT+AGG | + | chr4_1:65528641-65528660 | None:intergenic | 10.0% |
| !! | AAATATATTAAAATAAAAGG+GGG | - | chr4_1:65529581-65529600 | Msa0564790:intron | 10.0% |
| !!! | ATATACTACATTTTTTTTTT+TGG | - | chr4_1:65530389-65530408 | Msa0564790:intron | 10.0% |
| !! | TAAGATAACAAATATTAGAT+GGG | + | chr4_1:65527768-65527787 | None:intergenic | 15.0% |
| !! | ATAAGATAACAAATATTAGA+TGG | + | chr4_1:65527769-65527788 | None:intergenic | 15.0% |
| !!! | CAATAAAGAAAAATTTTCTT+TGG | + | chr4_1:65527866-65527885 | None:intergenic | 15.0% |
| !! | TTCAAATTCTTTAAATATGT+AGG | - | chr4_1:65528335-65528354 | Msa0564790:CDS | 15.0% |
| !! | TTAATAAGATTCATATTAGA+AGG | + | chr4_1:65528509-65528528 | None:intergenic | 15.0% |
| !! | AATTGTGAAATTGTTTAATT+TGG | - | chr4_1:65529323-65529342 | Msa0564790:intron | 15.0% |
| !! | AATATATTAAAATAAAAGGG+GGG | - | chr4_1:65529582-65529601 | Msa0564790:intron | 15.0% |
| !!! | TTTTTCCTTGATTTTTTTTT+TGG | - | chr4_1:65530009-65530028 | Msa0564790:intron | 15.0% |
| !!! | TTTTCCTTGATTTTTTTTTT+GGG | - | chr4_1:65530010-65530029 | Msa0564790:intron | 15.0% |
| !!! | GTATTTCATAAATCATTTTA+TGG | - | chr4_1:65530094-65530113 | Msa0564790:intron | 15.0% |
| !!! | CTTTGTTTAAAATTATAACA+AGG | + | chr4_1:65530208-65530227 | None:intergenic | 15.0% |
| !! | TCTAATTAAAAATTTGTACT+GGG | - | chr4_1:65530945-65530964 | Msa0564790:intron | 15.0% |
| !!! | AAAGTTACATTTTTTTACTT+AGG | - | chr4_1:65531338-65531357 | Msa0564790:intron | 15.0% |
| !! | TATATATGAAAGATTAAGAA+AGG | + | chr4_1:65531985-65532004 | None:intergenic | 15.0% |
| !!! | TTTTCATATTATTATTGACA+TGG | + | chr4_1:65532188-65532207 | None:intergenic | 15.0% |
| !! | TCAATATATATATATAGCCT+TGG | - | chr4_1:65527526-65527545 | Msa0564790:CDS | 20.0% |
| !! | GATATAAAGTTAGTAATTGA+AGG | - | chr4_1:65528039-65528058 | Msa0564790:CDS | 20.0% |
| !! | AACAATTTCACAATTATCTA+GGG | + | chr4_1:65529318-65529337 | None:intergenic | 20.0% |
| !! | AAACAATTTCACAATTATCT+AGG | + | chr4_1:65529319-65529338 | None:intergenic | 20.0% |
| !!! | TATTTTTTTTTTCTCTCTAG+TGG | + | chr4_1:65529864-65529883 | None:intergenic | 20.0% |
| !! | ATGCAATAAATACAATAGAT+TGG | - | chr4_1:65529893-65529912 | Msa0564790:intron | 20.0% |
| !! | AATAAATACAATAGATTGGT+TGG | - | chr4_1:65529897-65529916 | Msa0564790:intron | 20.0% |
| !!! | ATAAATACAATAGATTGGTT+GGG | - | chr4_1:65529898-65529917 | Msa0564790:intron | 20.0% |
| !! | ATAGAAAAAATATGAAGTGT+TGG | - | chr4_1:65529941-65529960 | Msa0564790:CDS | 20.0% |
| !! | TATATCAACACTTAATTTCA+AGG | + | chr4_1:65530073-65530092 | None:intergenic | 20.0% |
| !!! | GAAAATCAATGTGTTTTTTT+TGG | + | chr4_1:65530350-65530369 | None:intergenic | 20.0% |
| !!! | ACTACATTTTTTTTTTTGGT+CGG | - | chr4_1:65530393-65530412 | Msa0564790:intron | 20.0% |
| !! | ACAATGTATTATTATATGCA+GGG | + | chr4_1:65530486-65530505 | None:intergenic | 20.0% |
| !!! | GTCATCTATTTTAAAATTGA+TGG | - | chr4_1:65530828-65530847 | Msa0564790:five_prime_UTR | 20.0% |
| !! | TAGTAATTACATAAAAGAGT+AGG | - | chr4_1:65530922-65530941 | Msa0564790:intron | 20.0% |
| !! | GTCTAATTAAAAATTTGTAC+TGG | - | chr4_1:65530944-65530963 | Msa0564790:intron | 20.0% |
| !!! | AATCAAAGTATTACAATACA+AGG | - | chr4_1:65530975-65530994 | Msa0564790:intron | 20.0% |
| !!! | ATCAAAGTATTACAATACAA+GGG | - | chr4_1:65530976-65530995 | Msa0564790:intron | 20.0% |
| !!! | TTTTTTTTTTTCCATTCAAG+TGG | - | chr4_1:65531311-65531330 | Msa0564790:intron | 20.0% |
| !! | TTATTGTTCATGATATCTAA+GGG | + | chr4_1:65531565-65531584 | None:intergenic | 20.0% |
| !! | ATTATTGTTCATGATATCTA+AGG | + | chr4_1:65531566-65531585 | None:intergenic | 20.0% |
| !!! | TGTAAATTTTTCTTCCAATA+TGG | + | chr4_1:65531589-65531608 | None:intergenic | 20.0% |
| ! | TGATCAAAATGAACACAAAA+GGG | + | chr4_1:65527692-65527711 | None:intergenic | 25.0% |
| ! | ATGATCAAAATGAACACAAA+AGG | + | chr4_1:65527693-65527712 | None:intergenic | 25.0% |
| ! | AAAATGAACACAAAAAGAAC+AGG | + | chr4_1:65527728-65527747 | None:intergenic | 25.0% |
| !! | TTTCTTTGGAAAAACAAGTT+AGG | + | chr4_1:65527852-65527871 | None:intergenic | 25.0% |
| ! | TCATATGATAAACCTGAATA+TGG | - | chr4_1:65528144-65528163 | Msa0564790:CDS | 25.0% |
| !! | TTGCAATTTTATCCATATTC+AGG | + | chr4_1:65528159-65528178 | None:intergenic | 25.0% |
| ! | AAGTTTATTAATTAACACCC+TGG | - | chr4_1:65528204-65528223 | Msa0564790:CDS | 25.0% |
| ! | TATGCAAATTAATGAAACCA+GGG | + | chr4_1:65528224-65528243 | None:intergenic | 25.0% |
| ! | ATATGCAAATTAATGAAACC+AGG | + | chr4_1:65528225-65528244 | None:intergenic | 25.0% |
| ! | AGAAAGGAATTAACTGTAAA+GGG | + | chr4_1:65528257-65528276 | None:intergenic | 25.0% |
| ! | TGAGAAATAATTAATGAGAG+AGG | + | chr4_1:65528549-65528568 | None:intergenic | 25.0% |
| ! | GAATTAAAATTGATGAGAAC+AGG | + | chr4_1:65528687-65528706 | None:intergenic | 25.0% |
| ! | TTGTTAATCAATATGTCAGA+TGG | - | chr4_1:65528799-65528818 | Msa0564790:intron | 25.0% |
| !! | TGATGATGAGAAATTAGTAA+AGG | - | chr4_1:65529011-65529030 | Msa0564790:intron | 25.0% |
| ! | TCAAATGAAAGAAGAAGAAA+TGG | - | chr4_1:65529078-65529097 | Msa0564790:intron | 25.0% |
| ! | TATATATACACTTACTCTCT+TGG | + | chr4_1:65529197-65529216 | None:intergenic | 25.0% |
| ! | GGTATATAAGACAAAATTTG+AGG | - | chr4_1:65529476-65529495 | Msa0564790:intron | 25.0% |
| !! | AGATCAATTAATTTTTCTGC+AGG | - | chr4_1:65529626-65529645 | Msa0564790:intron | 25.0% |
| !! | GATCAATTAATTTTTCTGCA+GGG | - | chr4_1:65529627-65529646 | Msa0564790:intron | 25.0% |
| ! | AAATACCGAATGATTTATCT+TGG | - | chr4_1:65529789-65529808 | Msa0564790:intron | 25.0% |
| ! | CAATTCCAAGATAAATCATT+CGG | + | chr4_1:65529797-65529816 | None:intergenic | 25.0% |
| ! | TCTAGTGGTATATTATTCTT+TGG | + | chr4_1:65529849-65529868 | None:intergenic | 25.0% |
| !! | TAAATACAATAGATTGGTTG+GGG | - | chr4_1:65529899-65529918 | Msa0564790:intron | 25.0% |
| !! | AATTTTCATTTCAGATGTAC+CGG | - | chr4_1:65530123-65530142 | Msa0564790:intron | 25.0% |
| ! | TAAACAAAGACATCATAGAT+AGG | - | chr4_1:65530219-65530238 | Msa0564790:intron | 25.0% |
| ! | AAACAAAGACATCATAGATA+GGG | - | chr4_1:65530220-65530239 | Msa0564790:intron | 25.0% |
| !! | TCTTTGTTATAAATGGTGTA+CGG | + | chr4_1:65530298-65530317 | None:intergenic | 25.0% |
| ! | AATGTCTTCTCATAAAAATG+TGG | + | chr4_1:65530326-65530345 | None:intergenic | 25.0% |
| ! | AATGTAGTATATGAAAAGCA+AGG | + | chr4_1:65530381-65530400 | None:intergenic | 25.0% |
| ! | ACCTTATAAAGTAGATAAGT+GGG | - | chr4_1:65530437-65530456 | Msa0564790:CDS | 25.0% |
| ! | CAATGTATTATTATATGCAG+GGG | + | chr4_1:65530485-65530504 | None:intergenic | 25.0% |
| ! | GACAATGTATTATTATATGC+AGG | + | chr4_1:65530487-65530506 | None:intergenic | 25.0% |
| !!! | ACCATATTTTTTTCACCAAA+TGG | - | chr4_1:65530674-65530693 | Msa0564790:CDS | 25.0% |
| !! | ACCATTTGGTGAAAAAAATA+TGG | + | chr4_1:65530678-65530697 | None:intergenic | 25.0% |
| ! | AAGTAAGTATCATTAGAGTT+GGG | + | chr4_1:65530875-65530894 | None:intergenic | 25.0% |
| !!! | TTAGGGTTAGTTTATTTTAG+CGG | - | chr4_1:65531000-65531019 | Msa0564790:intron | 25.0% |
| ! | ATAGTTTACCTTGAATTGAT+GGG | + | chr4_1:65531270-65531289 | None:intergenic | 25.0% |
| ! | TATAGTTTACCTTGAATTGA+TGG | + | chr4_1:65531271-65531290 | None:intergenic | 25.0% |
| !! | ATCTTTTCTCTTCAAGAAAT+TGG | + | chr4_1:65531537-65531556 | None:intergenic | 25.0% |
| ! | AATTTCTTGAAGAGAAAAGA+TGG | - | chr4_1:65531536-65531555 | Msa0564790:intron | 25.0% |
| ! | TCATGAACAATAATCCATAT+TGG | - | chr4_1:65531572-65531591 | Msa0564790:intron | 25.0% |
| ! | TTGAACTATTAAAATCGTTG+TGG | + | chr4_1:65531720-65531739 | None:intergenic | 25.0% |
| ! | TAGAACAAATAGTATAGTGA+CGG | - | chr4_1:65531796-65531815 | Msa0564790:intron | 25.0% |
| ! | GTAAACTTGATAGGTAGTTT+TGG | + | chr4_1:65527419-65527438 | None:intergenic | 30.0% |
| GAAGGAAATGTAAACTTGAT+AGG | + | chr4_1:65527428-65527447 | None:intergenic | 30.0% | |
| AATGAACACAAAAGGGATAT+TGG | + | chr4_1:65527685-65527704 | None:intergenic | 30.0% | |
| AACAAGTTAGGAGATTGATT+AGG | + | chr4_1:65527840-65527859 | None:intergenic | 30.0% | |
| AAAACACATCTTCCTTTAGA+GGG | + | chr4_1:65527911-65527930 | None:intergenic | 30.0% | |
| GAGAAAGGAATTAACTGTAA+AGG | + | chr4_1:65528258-65528277 | None:intergenic | 30.0% | |
| TACTCAGCTACTTATTCATT+AGG | - | chr4_1:65528288-65528307 | Msa0564790:intron | 30.0% | |
| AGAAAATAGAGTAGAGATGT+TGG | - | chr4_1:65528411-65528430 | Msa0564790:CDS | 30.0% | |
| TAGTAGAGTATAGTACTAGT+AGG | + | chr4_1:65528482-65528501 | None:intergenic | 30.0% | |
| AGCTTCTTCATTCAAATCAA+AGG | + | chr4_1:65528917-65528936 | None:intergenic | 30.0% | |
| TAACAATGAAGAGAATGATG+AGG | - | chr4_1:65528957-65528976 | Msa0564790:intron | 30.0% | |
| TGTGATCATGAATTAGTGAA+TGG | - | chr4_1:65528982-65529001 | Msa0564790:intron | 30.0% | |
| ! | TTAGTAAAGGATGATGATGA+AGG | - | chr4_1:65529024-65529043 | Msa0564790:intron | 30.0% |
| AGTTCAACAAAAAGAAGTAG+TGG | - | chr4_1:65529054-65529073 | Msa0564790:intron | 30.0% | |
| ATAAAGGAATGATGAAGATC+AGG | + | chr4_1:65529150-65529169 | None:intergenic | 30.0% | |
| GTTGTGTGCATTATTAATGT+TGG | - | chr4_1:65529365-65529384 | Msa0564790:intron | 30.0% | |
| ACGTGAAACAAAAATATCAG+TGG | + | chr4_1:65529560-65529579 | None:intergenic | 30.0% | |
| CGAATGATTTATCTTGGAAT+TGG | - | chr4_1:65529795-65529814 | Msa0564790:intron | 30.0% | |
| !!! | TCCTTGATTTTTTTTTTGGG+TGG | - | chr4_1:65530013-65530032 | Msa0564790:intron | 30.0% |
| ACCACCCAAAAAAAAAATCA+AGG | + | chr4_1:65530017-65530036 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTTTTGGGTGGTGA+TGG | - | chr4_1:65530019-65530038 | Msa0564790:intron | 30.0% |
| AACAAAGACATCATAGATAG+GGG | - | chr4_1:65530221-65530240 | Msa0564790:intron | 30.0% | |
| TAAGCTATATTGTTGCCTAA+AGG | + | chr4_1:65530260-65530279 | None:intergenic | 30.0% | |
| ! | GGTACTGTCTTTGTTATAAA+TGG | + | chr4_1:65530305-65530324 | None:intergenic | 30.0% |
| CACCTTATAAAGTAGATAAG+TGG | - | chr4_1:65530436-65530455 | Msa0564790:CDS | 30.0% | |
| CCTTATAAAGTAGATAAGTG+GGG | - | chr4_1:65530438-65530457 | Msa0564790:CDS | 30.0% | |
| TTCAAATAAGTGACATCGTT+TGG | - | chr4_1:65530621-65530640 | Msa0564790:CDS | 30.0% | |
| ACATCTTATATGTCACCATT+TGG | + | chr4_1:65530692-65530711 | None:intergenic | 30.0% | |
| AAATGTGCACATGTGTAAAA+CGG | - | chr4_1:65530797-65530816 | Msa0564790:exon | 30.0% | |
| GAAGTAAGTATCATTAGAGT+TGG | + | chr4_1:65530876-65530895 | None:intergenic | 30.0% | |
| TATTACAATACAAGGGCTTA+GGG | - | chr4_1:65530983-65531002 | Msa0564790:intron | 30.0% | |
| AGAAATGGAACCTAATTCAT+GGG | + | chr4_1:65531094-65531113 | None:intergenic | 30.0% | |
| ATGTGAATGTGAATGTGATA+AGG | + | chr4_1:65531241-65531260 | None:intergenic | 30.0% | |
| ! | TAACTTTAATGCCACTTGAA+TGG | + | chr4_1:65531325-65531344 | None:intergenic | 30.0% |
| GATGATTTAAGTACCATTCT+TGG | + | chr4_1:65531366-65531385 | None:intergenic | 30.0% | |
| GGTACTTAAATCATCAATCT+TGG | - | chr4_1:65531371-65531390 | Msa0564790:intron | 30.0% | |
| TGATCTTCCTTGTGTATTTA+TGG | + | chr4_1:65531440-65531459 | None:intergenic | 30.0% | |
| AATGTTACCTTAATCCGAAA+CGG | + | chr4_1:65531760-65531779 | None:intergenic | 30.0% | |
| ATTAGCAAAAGAAACGTAGA+AGG | + | chr4_1:65531910-65531929 | None:intergenic | 30.0% | |
| ATTGCTGAAAGACAAACAAT+GGG | - | chr4_1:65532035-65532054 | Msa0564790:five_prime_UTR | 30.0% | |
| CTGAGTTTAAGTCAAACAAA+CGG | - | chr4_1:65532072-65532091 | Msa0564790:five_prime_UTR | 30.0% | |
| !!! | CTTGATAGGTAGTTTTGGTT+TGG | + | chr4_1:65527414-65527433 | None:intergenic | 35.0% |
| CTTGGAAGAGAAATAATCGA+GGG | - | chr4_1:65527544-65527563 | Msa0564790:CDS | 35.0% | |
| ACATCTTCATCTTGAATGGT+TGG | - | chr4_1:65527569-65527588 | Msa0564790:CDS | 35.0% | |
| AACCATGAAGATAGAGATGA+GGG | + | chr4_1:65527659-65527678 | None:intergenic | 35.0% | |
| GAAAACACATCTTCCTTTAG+AGG | + | chr4_1:65527912-65527931 | None:intergenic | 35.0% | |
| TTAGTGACAGATCAACACAT+TGG | + | chr4_1:65528087-65528106 | None:intergenic | 35.0% | |
| CCTGTGTAAGATACGTTTAT+TGG | + | chr4_1:65528121-65528140 | None:intergenic | 35.0% | |
| CCAATAAACGTATCTTACAC+AGG | - | chr4_1:65528118-65528137 | Msa0564790:CDS | 35.0% | |
| AAGGAATTAACTGTAAAGGG+TGG | + | chr4_1:65528254-65528273 | None:intergenic | 35.0% | |
| GAGTAATCAGAAAAGGAGAA+AGG | + | chr4_1:65528273-65528292 | None:intergenic | 35.0% | |
| AGTAGCTGAGTAATCAGAAA+AGG | + | chr4_1:65528280-65528299 | None:intergenic | 35.0% | |
| CTGTCAGAAATTTGATTCAC+AGG | - | chr4_1:65528378-65528397 | Msa0564790:CDS | 35.0% | |
| ! | ATAGAGTAGAGATGTTGGTT+TGG | - | chr4_1:65528416-65528435 | Msa0564790:CDS | 35.0% |
| CTAGAATGGCATGGTAATAA+AGG | + | chr4_1:65528608-65528627 | None:intergenic | 35.0% | |
| !! | TAGGTACTGAAATGCTAGAA+TGG | + | chr4_1:65528622-65528641 | None:intergenic | 35.0% |
| ATGAGAAACATGAGAATGAG+AGG | - | chr4_1:65528824-65528843 | Msa0564790:intron | 35.0% | |
| ATGTTAGATCAAAGATGCCT+AGG | - | chr4_1:65529112-65529131 | Msa0564790:intron | 35.0% | |
| GTGTGCATTATTAATGTTGG+TGG | - | chr4_1:65529368-65529387 | Msa0564790:intron | 35.0% | |
| ! | ATCAGTTGAAGCACCAATTT+GGG | + | chr4_1:65529411-65529430 | None:intergenic | 35.0% |
| !!! | GGTGGTGATGGTATTTTTTT+TGG | - | chr4_1:65530031-65530050 | Msa0564790:intron | 35.0% |
| GGTGTGTCTAACAAGATTTA+GGG | + | chr4_1:65530187-65530206 | None:intergenic | 35.0% | |
| AGGTGTGTCTAACAAGATTT+AGG | + | chr4_1:65530188-65530207 | None:intergenic | 35.0% | |
| CTATATTGTTGCCTAAAGGT+TGG | + | chr4_1:65530256-65530275 | None:intergenic | 35.0% | |
| CCCCACTTATCTACTTTATA+AGG | + | chr4_1:65530441-65530460 | None:intergenic | 35.0% | |
| TATTATTATATGCAGGGGTC+GGG | + | chr4_1:65530480-65530499 | None:intergenic | 35.0% | |
| GTATTATTATATGCAGGGGT+CGG | + | chr4_1:65530481-65530500 | None:intergenic | 35.0% | |
| TATTTGAAGAGTGAGAGTAG+CGG | + | chr4_1:65530609-65530628 | None:intergenic | 35.0% | |
| GTATTACAATACAAGGGCTT+AGG | - | chr4_1:65530982-65531001 | Msa0564790:intron | 35.0% | |
| GAGAAATGGAACCTAATTCA+TGG | + | chr4_1:65531095-65531114 | None:intergenic | 35.0% | |
| ! | GAAATGTTGATGAGGTATCA+TGG | + | chr4_1:65531136-65531155 | None:intergenic | 35.0% |
| ACCTCATCAACATTTCAAGA+TGG | - | chr4_1:65531140-65531159 | Msa0564790:intron | 35.0% | |
| CAACATTTCAAGATGGCAAA+TGG | - | chr4_1:65531147-65531166 | Msa0564790:intron | 35.0% | |
| TGTGGAAATTATAACTGTGC+TGG | + | chr4_1:65531200-65531219 | None:intergenic | 35.0% | |
| TGTGAATGTGATAAGGATGA+GGG | + | chr4_1:65531234-65531253 | None:intergenic | 35.0% | |
| ATGTGAATGTGATAAGGATG+AGG | + | chr4_1:65531235-65531254 | None:intergenic | 35.0% | |
| ATTCAAAGCCCATCAATTCA+AGG | - | chr4_1:65531259-65531278 | Msa0564790:intron | 35.0% | |
| ! | TTTTACTTAGGCACCAAGAA+TGG | - | chr4_1:65531350-65531369 | Msa0564790:intron | 35.0% |
| AATTCATTGCTCATGTAGCT+TGG | + | chr4_1:65531400-65531419 | None:intergenic | 35.0% | |
| TGTGTATTTATGGCTGTTGA+TGG | + | chr4_1:65531430-65531449 | None:intergenic | 35.0% | |
| TCAACAGCCATAAATACACA+AGG | - | chr4_1:65531430-65531449 | Msa0564790:intron | 35.0% | |
| !! | AAGCTGCTGATTCAAAGTTA+TGG | + | chr4_1:65531464-65531483 | None:intergenic | 35.0% |
| ! | GCTTCAAGTTAAGGATACTA+CGG | - | chr4_1:65531480-65531499 | Msa0564790:intron | 35.0% |
| TTCTCTTCAAGAAATTGGCT+TGG | + | chr4_1:65531532-65531551 | None:intergenic | 35.0% | |
| TTGTTCATGATATCTAAGGG+AGG | + | chr4_1:65531562-65531581 | None:intergenic | 35.0% | |
| ATGTTACCTTAATCCGAAAC+GGG | + | chr4_1:65531759-65531778 | None:intergenic | 35.0% | |
| TAGTGACAAGAGAATTAGAG+AGG | + | chr4_1:65531848-65531867 | None:intergenic | 35.0% | |
| CATTGCTGAAAGACAAACAA+TGG | - | chr4_1:65532034-65532053 | Msa0564790:five_prime_UTR | 35.0% | |
| CTTAAACTCAGTTGCAAATC+AGG | + | chr4_1:65532063-65532082 | None:intergenic | 35.0% | |
| !! | CTGTTGATCTTTTGAGTGGA+AGG | + | chr4_1:65527446-65527465 | None:intergenic | 40.0% |
| ! | GATGCTGTTGATCTTTTGAG+TGG | + | chr4_1:65527450-65527469 | None:intergenic | 40.0% |
| ! | CCTCGATTATTTCTCTTCCA+AGG | + | chr4_1:65527546-65527565 | None:intergenic | 40.0% |
| CCTTGGAAGAGAAATAATCG+AGG | - | chr4_1:65527543-65527562 | Msa0564790:CDS | 40.0% | |
| GGACACATCTTCATCTTGAA+TGG | - | chr4_1:65527565-65527584 | Msa0564790:CDS | 40.0% | |
| ACCATGAAGATAGAGATGAG+GGG | + | chr4_1:65527658-65527677 | None:intergenic | 40.0% | |
| GAACCATGAAGATAGAGATG+AGG | + | chr4_1:65527660-65527679 | None:intergenic | 40.0% | |
| GAACACAAAAGGGATATTGG+TGG | + | chr4_1:65527682-65527701 | None:intergenic | 40.0% | |
| TTAGAGGGATGTACTTCTGA+GGG | + | chr4_1:65527896-65527915 | None:intergenic | 40.0% | |
| TTTAGAGGGATGTACTTCTG+AGG | + | chr4_1:65527897-65527916 | None:intergenic | 40.0% | |
| ! | TCAGAAGTACATCCCTCTAA+AGG | - | chr4_1:65527896-65527915 | Msa0564790:CDS | 40.0% |
| GAATTAACTGTAAAGGGTGG+AGG | + | chr4_1:65528251-65528270 | None:intergenic | 40.0% | |
| ACTGAAATGCTAGAATGGCA+TGG | + | chr4_1:65528617-65528636 | None:intergenic | 40.0% | |
| !! | ATGAGAATGAGAGGAGTACT+GGG | - | chr4_1:65528833-65528852 | Msa0564790:intron | 40.0% |
| CCTTTCAACAGCATGCATAA+AGG | + | chr4_1:65529166-65529185 | None:intergenic | 40.0% | |
| CCTTTATGCATGCTGTTGAA+AGG | - | chr4_1:65529163-65529182 | Msa0564790:intron | 40.0% | |
| ! | CATCAGTTGAAGCACCAATT+TGG | + | chr4_1:65529412-65529431 | None:intergenic | 40.0% |
| CTTCAACTGATGAATGTGAG+AGG | - | chr4_1:65529420-65529439 | Msa0564790:intron | 40.0% | |
| AACCTACAAACATTATCCCC+CGG | + | chr4_1:65529666-65529685 | None:intergenic | 40.0% | |
| TATTGTTGCCTAAAGGTTGG+TGG | + | chr4_1:65530253-65530272 | None:intergenic | 40.0% | |
| TAAGGTGAATTCTAGCCACT+AGG | + | chr4_1:65530423-65530442 | None:intergenic | 40.0% | |
| ATTATTATATGCAGGGGTCG+GGG | + | chr4_1:65530479-65530498 | None:intergenic | 40.0% | |
| ACATTGTCCTATACCAACTG+AGG | - | chr4_1:65530499-65530518 | Msa0564790:CDS | 40.0% | |
| CACAGATCAACCCATGAATT+AGG | - | chr4_1:65531081-65531100 | Msa0564790:intron | 40.0% | |
| ! | ATGAGGTATCATGGACTGAT+GGG | + | chr4_1:65531127-65531146 | None:intergenic | 40.0% |
| GCCATCTTGAAATGTTGATG+AGG | + | chr4_1:65531144-65531163 | None:intergenic | 40.0% | |
| CATTTCAAGATGGCAAATGG+TGG | - | chr4_1:65531150-65531169 | Msa0564790:intron | 40.0% | |
| ! | GAATCAGCAGCTTCAAGTTA+AGG | - | chr4_1:65531471-65531490 | Msa0564790:intron | 40.0% |
| !! | AGAAATTGGCTTGGTCTCAT+AGG | + | chr4_1:65531523-65531542 | None:intergenic | 40.0% |
| TTGGAAACAACACAAGAAGC+AGG | - | chr4_1:65531668-65531687 | Msa0564790:intron | 40.0% | |
| TGGAAACAACACAAGAAGCA+GGG | - | chr4_1:65531669-65531688 | Msa0564790:intron | 40.0% | |
| TTGAATTTGATCCCCCGTTT+CGG | - | chr4_1:65531743-65531762 | Msa0564790:intron | 40.0% | |
| TGTTACCTTAATCCGAAACG+GGG | + | chr4_1:65531758-65531777 | None:intergenic | 40.0% | |
| !! | GAGTTTCGTGTCGATTTCTT+TGG | + | chr4_1:65532133-65532152 | None:intergenic | 40.0% |
| ACCCCTCATCTCTATCTTCA+TGG | - | chr4_1:65527654-65527673 | Msa0564790:intron | 45.0% | |
| GATGAGAACAGGCTGTAAGA+TGG | + | chr4_1:65528676-65528695 | None:intergenic | 45.0% | |
| ! | CATGAGAATGAGAGGAGTAC+TGG | - | chr4_1:65528832-65528851 | Msa0564790:intron | 45.0% |
| GAAGAGTGAAGAACATGCTG+AGG | - | chr4_1:65528855-65528874 | Msa0564790:intron | 45.0% | |
| ACATGCTGAGGACACTTCAA+TGG | - | chr4_1:65528867-65528886 | Msa0564790:intron | 45.0% | |
| CATGCTGAGGACACTTCAAT+GGG | - | chr4_1:65528868-65528887 | Msa0564790:intron | 45.0% | |
| GATCAAAGATGCCTAGGCTT+AGG | - | chr4_1:65529118-65529137 | Msa0564790:intron | 45.0% | |
| ATGCATGCTGTTGAAAGGCT+TGG | - | chr4_1:65529168-65529187 | Msa0564790:intron | 45.0% | |
| !! | TTAATGTTGGTGGTGCATGC+AGG | - | chr4_1:65529378-65529397 | Msa0564790:intron | 45.0% |
| TCATGTCAAGAGTCACTTGC+AGG | - | chr4_1:65529455-65529474 | Msa0564790:CDS | 45.0% | |
| ! | AAGTAGATAAGTGGGGTGTC+CGG | - | chr4_1:65530445-65530464 | Msa0564790:CDS | 45.0% |
| ! | GAGCATACCTCAGTTGGTAT+AGG | + | chr4_1:65530509-65530528 | None:intergenic | 45.0% |
| TACCAACTGAGGTATGCTCA+CGG | - | chr4_1:65530510-65530529 | Msa0564790:CDS | 45.0% | |
| !! | TCATGGGTTGATCTGTGTGT+TGG | + | chr4_1:65531078-65531097 | None:intergenic | 45.0% |
| ! | ATGGGCTACATGGTGAGAAA+TGG | + | chr4_1:65531109-65531128 | None:intergenic | 45.0% |
| ! | GATGAGGTATCATGGACTGA+TGG | + | chr4_1:65531128-65531147 | None:intergenic | 45.0% |
| GTTACCTTAATCCGAAACGG+GGG | + | chr4_1:65531757-65531776 | None:intergenic | 45.0% | |
| CAAACAAACGGCAACAACGA+TGG | - | chr4_1:65532084-65532103 | Msa0564790:five_prime_UTR | 45.0% | |
| AACAACGATGGCAAGAGTGA+TGG | - | chr4_1:65532096-65532115 | Msa0564790:five_prime_UTR | 45.0% | |
| !! | GTAAAATATATTAAAATAAA+AGG | - | chr4_1:65529578-65529597 | Msa0564790:intron | 5.0% |
| !! | AAAATATATTAAAATAAAAG+GGG | - | chr4_1:65529580-65529599 | Msa0564790:intron | 5.0% |
| !!! | ATTTTTTTTATTGATTAATT+TGG | + | chr4_1:65529773-65529792 | None:intergenic | 5.0% |
| CAAAGATGCCTAGGCTTAGG+TGG | - | chr4_1:65529121-65529140 | Msa0564790:intron | 50.0% | |
| CATGCTGTTGAAAGGCTTGG+AGG | - | chr4_1:65529171-65529190 | Msa0564790:intron | 50.0% | |
| TGCAGGAGCAACACCCAAAT+TGG | - | chr4_1:65529395-65529414 | Msa0564790:intron | 50.0% | |
| CTACAAACATTATCCCCCGG+TGG | + | chr4_1:65529663-65529682 | None:intergenic | 50.0% | |
| CACCGGGGGATAATGTTTGT+AGG | - | chr4_1:65529661-65529680 | Msa0564790:intron | 50.0% | |
| CCTCGTCAAGTTTCTTGCTC+CGG | + | chr4_1:65530145-65530164 | None:intergenic | 50.0% | |
| AGCAAGAAACTTGACGAGGC+TGG | - | chr4_1:65530146-65530165 | Msa0564790:CDS | 50.0% | |
| AAACTTGACGAGGCTGGACA+AGG | - | chr4_1:65530152-65530171 | Msa0564790:CDS | 50.0% | |
| GGAAACCACCACCAACCTTT+AGG | - | chr4_1:65530242-65530261 | Msa0564790:intron | 50.0% | |
| !! | TGTTGCCTAAAGGTTGGTGG+TGG | + | chr4_1:65530250-65530269 | None:intergenic | 50.0% |
| !!! | TTTTTGGTCGGCTAGCCTAG+TGG | - | chr4_1:65530405-65530424 | Msa0564790:intron | 50.0% |
| ! | AGTAGATAAGTGGGGTGTCC+GGG | - | chr4_1:65530446-65530465 | Msa0564790:CDS | 50.0% |
| ACCAACTGAGGTATGCTCAC+GGG | - | chr4_1:65530511-65530530 | Msa0564790:CDS | 50.0% | |
| !! | TCATGGACTGATGGGCTACA+TGG | + | chr4_1:65531119-65531138 | None:intergenic | 50.0% |
| GTGATAAGGATGAGGGATGC+AGG | + | chr4_1:65531227-65531246 | None:intergenic | 50.0% | |
| TGGTCTCATAGGAGCAAGTG+TGG | + | chr4_1:65531512-65531531 | None:intergenic | 50.0% | |
| AACATCACTTAGACCCGCTG+AGG | - | chr4_1:65531639-65531658 | Msa0564790:intron | 50.0% | |
| TTTCCAAAGCTCACCTCAGC+GGG | + | chr4_1:65531655-65531674 | None:intergenic | 50.0% | |
| GTTTCCAAAGCTCACCTCAG+CGG | + | chr4_1:65531656-65531675 | None:intergenic | 50.0% | |
| TGATCCCCCGTTTCGGATTA+AGG | - | chr4_1:65531750-65531769 | Msa0564790:intron | 50.0% | |
| TCAGGAGTCCACCTAAGCCT+AGG | + | chr4_1:65529132-65529151 | None:intergenic | 55.0% | |
| ACATTATCCCCCGGTGGACA+CGG | + | chr4_1:65529657-65529676 | None:intergenic | 55.0% | |
| CCGGAGCAAGAAACTTGACG+AGG | - | chr4_1:65530142-65530161 | Msa0564790:CDS | 55.0% | |
| TGACGAGGCTGGACAAGGTA+AGG | - | chr4_1:65530157-65530176 | Msa0564790:CDS | 55.0% | |
| ! | GTAGATAAGTGGGGTGTCCG+GGG | - | chr4_1:65530447-65530466 | Msa0564790:CDS | 55.0% |
| TCCCGTGAGCATACCTCAGT+TGG | + | chr4_1:65530515-65530534 | None:intergenic | 55.0% | |
| ATGAGGGATGCAGGAGACTG+TGG | + | chr4_1:65531218-65531237 | None:intergenic | 55.0% | |
| AGACCCGCTGAGGTGAGCTT+TGG | - | chr4_1:65531649-65531668 | Msa0564790:intron | 60.0% | |
| GCAGGGTGATCCGTGTCCAC+CGG | - | chr4_1:65529644-65529663 | Msa0564790:intron | 65.0% | |
| CAGGGTGATCCGTGTCCACC+GGG | - | chr4_1:65529645-65529664 | Msa0564790:intron | 65.0% | |
| AGGGTGATCCGTGTCCACCG+GGG | - | chr4_1:65529646-65529665 | Msa0564790:intron | 65.0% | |
| GGGTGATCCGTGTCCACCGG+GGG | - | chr4_1:65529647-65529666 | Msa0564790:intron | 70.0% | |
| AGGGGTCGGGGTTCGAACCC+CGG | + | chr4_1:65530467-65530486 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 65527401 | 65532211 | 65527401 | ID=Msa0564790;Name=Msa0564790 |
| chr4_1 | mRNA | 65527401 | 65532211 | 65527401 | ID=Msa0564790-mRNA-1;Parent=Msa0564790;Name=Msa0564790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=241|0.71|0.87|0.87|0.85|0.75|8|47|433 |
| chr4_1 | exon | 65527401 | 65527591 | 65527401 | ID=Msa0564790-mRNA-1:exon:21150;Parent=Msa0564790-mRNA-1 |
| chr4_1 | exon | 65527841 | 65528252 | 65527841 | ID=Msa0564790-mRNA-1:exon:21149;Parent=Msa0564790-mRNA-1 |
| chr4_1 | exon | 65528332 | 65528545 | 65528332 | ID=Msa0564790-mRNA-1:exon:21148;Parent=Msa0564790-mRNA-1 |
| chr4_1 | exon | 65529439 | 65529475 | 65529439 | ID=Msa0564790-mRNA-1:exon:21147;Parent=Msa0564790-mRNA-1 |
| chr4_1 | exon | 65529938 | 65529964 | 65529938 | ID=Msa0564790-mRNA-1:exon:21146;Parent=Msa0564790-mRNA-1 |
| chr4_1 | exon | 65530136 | 65530212 | 65530136 | ID=Msa0564790-mRNA-1:exon:21145;Parent=Msa0564790-mRNA-1 |
| chr4_1 | exon | 65530411 | 65530856 | 65530411 | ID=Msa0564790-mRNA-1:exon:21144;Parent=Msa0564790-mRNA-1 |
| chr4_1 | exon | 65532026 | 65532211 | 65532026 | ID=Msa0564790-mRNA-1:exon:21143;Parent=Msa0564790-mRNA-1 |
| chr4_1 | five_prime_UTR | 65532026 | 65532211 | 65532026 | ID=Msa0564790-mRNA-1:five_prime_utr;Parent=Msa0564790-mRNA-1 |
| chr4_1 | five_prime_UTR | 65530802 | 65530856 | 65530802 | ID=Msa0564790-mRNA-1:five_prime_utr;Parent=Msa0564790-mRNA-1 |
| chr4_1 | CDS | 65530411 | 65530801 | 65530411 | ID=Msa0564790-mRNA-1:cds;Parent=Msa0564790-mRNA-1 |
| chr4_1 | CDS | 65530136 | 65530212 | 65530136 | ID=Msa0564790-mRNA-1:cds;Parent=Msa0564790-mRNA-1 |
| chr4_1 | CDS | 65529938 | 65529964 | 65529938 | ID=Msa0564790-mRNA-1:cds;Parent=Msa0564790-mRNA-1 |
| chr4_1 | CDS | 65529439 | 65529475 | 65529439 | ID=Msa0564790-mRNA-1:cds;Parent=Msa0564790-mRNA-1 |
| chr4_1 | CDS | 65528332 | 65528545 | 65528332 | ID=Msa0564790-mRNA-1:cds;Parent=Msa0564790-mRNA-1 |
| chr4_1 | CDS | 65527841 | 65528252 | 65527841 | ID=Msa0564790-mRNA-1:cds;Parent=Msa0564790-mRNA-1 |
| chr4_1 | CDS | 65527448 | 65527591 | 65527448 | ID=Msa0564790-mRNA-1:cds;Parent=Msa0564790-mRNA-1 |
| chr4_1 | three_prime_UTR | 65527401 | 65527447 | 65527401 | ID=Msa0564790-mRNA-1:three_prime_utr;Parent=Msa0564790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
