Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0566370 | AET04474.1 | 85.093 | 161 | 19 | 1 | 1 | 161 | 1 | 156 | 1.52e-87 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0566370 | G7L9K0 | 85.093 | 161 | 19 | 1 | 1 | 161 | 1 | 156 | 7.26e-88 | 263 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0566370 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAACTGGCTTGTCTTT+TGG | 0.254968 | 4_1:-67432577 | None:intergenic |
| CTTTGAGGTTTCCCCAGTTT+TGG | 0.256311 | 4_1:-67432621 | None:intergenic |
| TTTATACCTTCAAATGAAAT+TGG | 0.266437 | 4_1:+67436989 | Msa0566370:CDS |
| TGGCGCCATGCTGGAGTTGC+TGG | 0.314815 | 4_1:-67432550 | None:intergenic |
| ATCCTCAAACAACGTCTCTT+TGG | 0.317203 | 4_1:-67436842 | None:intergenic |
| GATGTTTCTGATTCAGATAA+TGG | 0.318368 | 4_1:+67432736 | Msa0566370:CDS |
| CTGTTAGTAACAAGTTCTTT+TGG | 0.373720 | 4_1:-67432667 | None:intergenic |
| TTTGGTCCCTGGCGCCATGC+TGG | 0.374123 | 4_1:-67432559 | None:intergenic |
| CTCCAAAGAGACGTTGTTTG+AGG | 0.374170 | 4_1:+67436840 | Msa0566370:CDS |
| CCTTCAAATGAAATTGGTCT+TGG | 0.383519 | 4_1:+67436995 | Msa0566370:CDS |
| GAAAACAACGTTTGAGAGAA+TGG | 0.387976 | 4_1:-67432645 | None:intergenic |
| GTGGACTAAGATACCAAAAC+TGG | 0.405891 | 4_1:+67432608 | Msa0566370:CDS |
| CCACATGCATTGCATAAAAC+TGG | 0.410323 | 4_1:-67432589 | None:intergenic |
| CCAAGACCAATTTCATTTGA+AGG | 0.412288 | 4_1:-67436995 | None:intergenic |
| AGCAACTCCAGCATGGCGCC+AGG | 0.436034 | 4_1:+67432552 | Msa0566370:CDS |
| TCCCTTCTACATAGAAGAAC+CGG | 0.461538 | 4_1:-67437038 | None:intergenic |
| GTTTGAGAGAATGGTCTTTG+AGG | 0.475222 | 4_1:-67432636 | None:intergenic |
| TCTTCTGAGGATGACTCATC+TGG | 0.485391 | 4_1:-67436938 | None:intergenic |
| GCCGTTCTTCTTAAACCAGC+CGG | 0.516218 | 4_1:+67437019 | Msa0566370:CDS |
| ATCTGAATCAGAAACATCAA+TGG | 0.539843 | 4_1:-67432731 | None:intergenic |
| GAATAATAAGGCCTCTTCTG+AGG | 0.565756 | 4_1:-67436951 | None:intergenic |
| GCAACTCCAGCATGGCGCCA+GGG | 0.585142 | 4_1:+67432553 | Msa0566370:CDS |
| ACCGGCTGGTTTAAGAAGAA+CGG | 0.594026 | 4_1:-67437020 | None:intergenic |
| AGATGAGTCATCCTCAGAAG+AGG | 0.600054 | 4_1:+67436940 | Msa0566370:CDS |
| AAAGAACTTGTTACTAACAG+TGG | 0.608058 | 4_1:+67432670 | Msa0566370:CDS |
| TTCTACATAGAAGAACCGGC+TGG | 0.612139 | 4_1:-67437034 | None:intergenic |
| CAATCAGAAGATGACACCCA+TGG | 0.614905 | 4_1:+67436868 | Msa0566370:CDS |
| TGGACTAAGATACCAAAACT+GGG | 0.618651 | 4_1:+67432609 | Msa0566370:CDS |
| CATCACCAGCAACTCCAGCA+TGG | 0.651498 | 4_1:+67432545 | Msa0566370:CDS |
| GGACTAAGATACCAAAACTG+GGG | 0.731002 | 4_1:+67432610 | Msa0566370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTAGAATTTTT+TGG | - | chr4_1:67433337-67433356 | None:intergenic | 10.0% |
| !! | TAAAAATCAAATAAAACTAA+TGG | + | chr4_1:67433345-67433364 | Msa0566370:intron | 10.0% |
| !!! | TATTTTATTTAACAAAAATC+GGG | - | chr4_1:67433558-67433577 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | TAGTATATATATATAAAGTA+AGG | - | chr4_1:67435509-67435528 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !! | AATAGTATATATATAAAGTA+AGG | - | chr4_1:67433652-67433671 | None:intergenic | 10.0% |
| !!! | CAAAAATTAACTTTAAAATA+AGG | + | chr4_1:67436630-67436649 | Msa0566370:intron | 10.0% |
| !!! | TTATTAACAGTTTAAAATAA+GGG | - | chr4_1:67436764-67436783 | None:intergenic | 10.0% |
| !!! | TTTATTAACAGTTTAAAATA+AGG | - | chr4_1:67436765-67436784 | None:intergenic | 10.0% |
| !!! | AGTTTTTTGTTGTTTTTAAA+AGG | - | chr4_1:67433259-67433278 | None:intergenic | 15.0% |
| !!! | TTTTTATGATTTTATTTGAC+AGG | - | chr4_1:67433301-67433320 | None:intergenic | 15.0% |
| !!! | AAAACTAATGGAAATTTTTT+CGG | + | chr4_1:67433357-67433376 | Msa0566370:intron | 15.0% |
| !! | AATAGTATATATGTAAAGTA+AGG | - | chr4_1:67433988-67434007 | None:intergenic | 15.0% |
| !! | AATAGTATATATGTAAAGTA+AGG | - | chr4_1:67433988-67434007 | None:intergenic | 15.0% |
| !! | AATAGTATATATGTAAAGTA+AGG | - | chr4_1:67433988-67434007 | None:intergenic | 15.0% |
| !! | TATAAATGAGTTTACTTTAA+AGG | - | chr4_1:67436377-67436396 | None:intergenic | 15.0% |
| !!! | ATGAATTTTCATATTTTTGA+CGG | + | chr4_1:67436499-67436518 | Msa0566370:intron | 15.0% |
| !!! | GAAAAGTTGATATATTTATA+GGG | + | chr4_1:67436721-67436740 | Msa0566370:intron | 15.0% |
| !! | AACTTATTTAATATCTAACC+CGG | - | chr4_1:67432836-67432855 | None:intergenic | 20.0% |
| !!! | GCATTTTTAGAAATTTTACA+GGG | - | chr4_1:67433114-67433133 | None:intergenic | 20.0% |
| !!! | CAATTTCAGATTTTATAATC+TGG | + | chr4_1:67433174-67433193 | Msa0566370:intron | 20.0% |
| !! | AGAAAATCAGAAAAAATTCA+AGG | - | chr4_1:67433496-67433515 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTTCTGATTTTC+TGG | + | chr4_1:67433495-67433514 | Msa0566370:intron | 20.0% |
| !!! | TGAATTTTTTCTGATTTTCT+GGG | + | chr4_1:67433496-67433515 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+AGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !! | AAAAATATTGAGAATGAATG+TGG | + | chr4_1:67433604-67433623 | Msa0566370:intron | 20.0% |
| !!! | TATACTACTTTTATTTTGTG+AGG | + | chr4_1:67436209-67436228 | Msa0566370:intron | 20.0% |
| !!! | ATACTACTTTTATTTTGTGA+GGG | + | chr4_1:67436210-67436229 | Msa0566370:intron | 20.0% |
| !!! | TGCGTGAATATTTATTTTAA+GGG | + | chr4_1:67436239-67436258 | Msa0566370:intron | 20.0% |
| !!! | TTAAGGGTTAAATATGTTTT+TGG | + | chr4_1:67436255-67436274 | Msa0566370:intron | 20.0% |
| !!! | TGAAGATGAAATTTTTTTGA+TGG | - | chr4_1:67436342-67436361 | None:intergenic | 20.0% |
| !!! | AAAAATTTCATCTTCACTTT+TGG | + | chr4_1:67436346-67436365 | Msa0566370:intron | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr4_1:67436657-67436676 | None:intergenic | 20.0% |
| !! | TAGTGATTGAAAATTTCATA+GGG | + | chr4_1:67436661-67436680 | Msa0566370:intron | 20.0% |
| !!! | CGAAAAGTTGATATATTTAT+AGG | + | chr4_1:67436720-67436739 | Msa0566370:intron | 20.0% |
| !!! | ATAAGGGTTAAATATGTTTT+TGG | - | chr4_1:67436748-67436767 | None:intergenic | 20.0% |
| !!! | GTTCACATTTTTGAATAATA+AGG | - | chr4_1:67436966-67436985 | None:intergenic | 20.0% |
| !! | TTTATACCTTCAAATGAAAT+TGG | + | chr4_1:67436989-67437008 | Msa0566370:CDS | 20.0% |
| ! | TGTAAAGAAAAGAGTGAAAA+TGG | - | chr4_1:67432784-67432803 | None:intergenic | 25.0% |
| ! | ACTTATTTAATATCTAACCC+GGG | - | chr4_1:67432835-67432854 | None:intergenic | 25.0% |
| !!! | TACACTTTTTATTCTTGCAT+TGG | - | chr4_1:67432999-67433018 | None:intergenic | 25.0% |
| ! | AAGTAATAGTCCATGTTTAA+AGG | - | chr4_1:67433066-67433085 | None:intergenic | 25.0% |
| !!! | GGCATTTTTAGAAATTTTAC+AGG | - | chr4_1:67433115-67433134 | None:intergenic | 25.0% |
| !!! | TGAATCCGAATTTTAAAATC+CGG | - | chr4_1:67433148-67433167 | None:intergenic | 25.0% |
| !!! | GAATTTTTTCTGATTTTCTG+GGG | + | chr4_1:67433497-67433516 | Msa0566370:intron | 25.0% |
| !! | TTTAACAAAAATCGGGTTTT+CGG | - | chr4_1:67433551-67433570 | None:intergenic | 25.0% |
| !!! | GTGCGTGAATATTTATTTTA+AGG | + | chr4_1:67436238-67436257 | Msa0566370:intron | 25.0% |
| !!! | AGTTGAAGAAATTTTTTCGA+GGG | - | chr4_1:67436313-67436332 | None:intergenic | 25.0% |
| !!! | AAGTTGAAGAAATTTTTTCG+AGG | - | chr4_1:67436314-67436333 | None:intergenic | 25.0% |
| !! | AATGAGTTTACTTTAAAGGA+GGG | - | chr4_1:67436373-67436392 | None:intergenic | 25.0% |
| !! | AAATGAGTTTACTTTAAAGG+AGG | - | chr4_1:67436374-67436393 | None:intergenic | 25.0% |
| ! | GTAGTGATTGAAAATTTCAT+AGG | + | chr4_1:67436660-67436679 | Msa0566370:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr4_1:67436689-67436708 | Msa0566370:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr4_1:67436690-67436709 | Msa0566370:intron | 25.0% |
| ! | CTGTTAGTAACAAGTTCTTT+TGG | - | chr4_1:67432670-67432689 | None:intergenic | 30.0% |
| !! | AAAGAACTTGTTACTAACAG+TGG | + | chr4_1:67432670-67432689 | Msa0566370:CDS | 30.0% |
| ATCTGAATCAGAAACATCAA+TGG | - | chr4_1:67432734-67432753 | None:intergenic | 30.0% | |
| ! | GATGTTTCTGATTCAGATAA+TGG | + | chr4_1:67432736-67432755 | Msa0566370:CDS | 30.0% |
| CAATAATGAATTAGTCCAAG+TGG | + | chr4_1:67433026-67433045 | Msa0566370:intron | 30.0% | |
| !!! | GCATTCCGGATTTTAAAATT+CGG | + | chr4_1:67433140-67433159 | Msa0566370:intron | 30.0% |
| AATCCAAAATTCCATCGTTT+AGG | - | chr4_1:67433426-67433445 | None:intergenic | 30.0% | |
| ! | GATGGAATTTTGGATTTTGA+GGG | + | chr4_1:67433430-67433449 | Msa0566370:intron | 30.0% |
| ! | ATGGAATTTTGGATTTTGAG+GGG | + | chr4_1:67433431-67433450 | Msa0566370:intron | 30.0% |
| ! | TTAACAAAAATCGGGTTTTC+GGG | - | chr4_1:67433550-67433569 | None:intergenic | 30.0% |
| !!! | TACTTTTATTTTGTGAGGGT+GGG | + | chr4_1:67436214-67436233 | Msa0566370:intron | 30.0% |
| ! | TCTTGTTGAAACTTTTCCAT+GGG | - | chr4_1:67436887-67436906 | None:intergenic | 30.0% |
| ! | TTCTTGTTGAAACTTTTCCA+TGG | - | chr4_1:67436888-67436907 | None:intergenic | 30.0% |
| !!! | CATAAAACTGGCTTGTCTTT+TGG | - | chr4_1:67432580-67432599 | None:intergenic | 35.0% |
| TGGACTAAGATACCAAAACT+GGG | + | chr4_1:67432609-67432628 | Msa0566370:CDS | 35.0% | |
| GAAAACAACGTTTGAGAGAA+TGG | - | chr4_1:67432648-67432667 | None:intergenic | 35.0% | |
| ! | AGTCCAAGTGGTAATAGTTT+TGG | + | chr4_1:67433038-67433057 | Msa0566370:intron | 35.0% |
| ! | GTCCAAGTGGTAATAGTTTT+GGG | + | chr4_1:67433039-67433058 | Msa0566370:intron | 35.0% |
| !!! | AGTTTTGGGTCCTTTAAACA+TGG | + | chr4_1:67433053-67433072 | Msa0566370:intron | 35.0% |
| ! | TTTAGAAATTTTACAGGGCG+CGG | - | chr4_1:67433109-67433128 | None:intergenic | 35.0% |
| TTAAAATCCGGAATGCACAA+GGG | - | chr4_1:67433136-67433155 | None:intergenic | 35.0% | |
| ! | TTTAAAATCCGGAATGCACA+AGG | - | chr4_1:67433137-67433156 | None:intergenic | 35.0% |
| ! | CGATGGAATTTTGGATTTTG+AGG | + | chr4_1:67433429-67433448 | Msa0566370:intron | 35.0% |
| ATGAATGTGGAAGTGACATA+TGG | + | chr4_1:67434632-67434651 | Msa0566370:intron | 35.0% | |
| !!! | CTACTTTTATTTTGTGAGGG+TGG | + | chr4_1:67436213-67436232 | Msa0566370:intron | 35.0% |
| TCATAGGGACTAAAAGTTGA+AGG | + | chr4_1:67436676-67436695 | Msa0566370:intron | 35.0% | |
| CCAAGACCAATTTCATTTGA+AGG | - | chr4_1:67436998-67437017 | None:intergenic | 35.0% | |
| ! | CCTTCAAATGAAATTGGTCT+TGG | + | chr4_1:67436995-67437014 | Msa0566370:CDS | 35.0% |
| CCACATGCATTGCATAAAAC+TGG | - | chr4_1:67432592-67432611 | None:intergenic | 40.0% | |
| !! | CCAGTTTTATGCAATGCATG+TGG | + | chr4_1:67432589-67432608 | Msa0566370:CDS | 40.0% |
| ! | GTGGACTAAGATACCAAAAC+TGG | + | chr4_1:67432608-67432627 | Msa0566370:CDS | 40.0% |
| GGACTAAGATACCAAAACTG+GGG | + | chr4_1:67432610-67432629 | Msa0566370:CDS | 40.0% | |
| GTTTGAGAGAATGGTCTTTG+AGG | - | chr4_1:67432639-67432658 | None:intergenic | 40.0% | |
| GACCCAAAACTATTACCACT+TGG | - | chr4_1:67433044-67433063 | None:intergenic | 40.0% | |
| ! | TTAGAAATTTTACAGGGCGC+GGG | - | chr4_1:67433108-67433127 | None:intergenic | 40.0% |
| AAAAATGCCCTTGTGCATTC+CGG | + | chr4_1:67433126-67433145 | Msa0566370:intron | 40.0% | |
| TGAAATGTGAGAGAGTCTGA+TGG | - | chr4_1:67433221-67433240 | None:intergenic | 40.0% | |
| TGAAAAATGGGCCTAAACGA+TGG | + | chr4_1:67433412-67433431 | Msa0566370:intron | 40.0% | |
| !! | GAATTTTGGATTTTGAGGGG+CGG | + | chr4_1:67433434-67433453 | Msa0566370:intron | 40.0% |
| !! | CTGATTTTCTGGGGATGTTT+CGG | + | chr4_1:67433506-67433525 | Msa0566370:intron | 40.0% |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGAGGAAGTGACATG+TGG | + | chr4_1:67435645-67435664 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATGAATGTGGAAGTGACATG+TGG | + | chr4_1:67433617-67433636 | Msa0566370:intron | 40.0% | |
| ATCCTCAAACAACGTCTCTT+TGG | - | chr4_1:67436845-67436864 | None:intergenic | 40.0% | |
| GAATAATAAGGCCTCTTCTG+AGG | - | chr4_1:67436954-67436973 | None:intergenic | 40.0% | |
| !!! | CTTTGAGGTTTCCCCAGTTT+TGG | - | chr4_1:67432624-67432643 | None:intergenic | 45.0% |
| ! | GGGCCTAAACGATGGAATTT+TGG | + | chr4_1:67433420-67433439 | Msa0566370:intron | 45.0% |
| CTCCAAAGAGACGTTGTTTG+AGG | + | chr4_1:67436840-67436859 | Msa0566370:CDS | 45.0% | |
| CAATCAGAAGATGACACCCA+TGG | + | chr4_1:67436868-67436887 | Msa0566370:CDS | 45.0% | |
| ! | TCTTCTGAGGATGACTCATC+TGG | - | chr4_1:67436941-67436960 | None:intergenic | 45.0% |
| AGATGAGTCATCCTCAGAAG+AGG | + | chr4_1:67436940-67436959 | Msa0566370:CDS | 45.0% | |
| !! | ACCGGCTGGTTTAAGAAGAA+CGG | - | chr4_1:67437023-67437042 | None:intergenic | 45.0% |
| !! | AAATTAATAAAAATGAAAAA+TGG | + | chr4_1:67433399-67433418 | Msa0566370:intron | 5.0% |
| !! | AATTAATAAAAATGAAAAAT+GGG | + | chr4_1:67433400-67433419 | Msa0566370:intron | 5.0% |
| !!! | ATATTTTATTTAACAAAAAT+CGG | - | chr4_1:67433559-67433578 | None:intergenic | 5.0% |
| !!! | ATTTTTGTTAAATAAAATAT+TGG | + | chr4_1:67433559-67433578 | Msa0566370:intron | 5.0% |
| !!! | AAAAAAATTCTAATTTTTTT+TGG | + | chr4_1:67436553-67436572 | Msa0566370:intron | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+GGG | + | chr4_1:67436554-67436573 | Msa0566370:intron | 5.0% |
| ATATCTAACCCGGGCAACGT+CGG | - | chr4_1:67432826-67432845 | None:intergenic | 50.0% | |
| TCCCGTAAGAAGTCCCTTCT+AGG | + | chr4_1:67433459-67433478 | Msa0566370:intron | 50.0% | |
| CCCTAGAAGGGACTTCTTAC+GGG | - | chr4_1:67433463-67433482 | None:intergenic | 50.0% | |
| CCCGTAAGAAGTCCCTTCTA+GGG | + | chr4_1:67433460-67433479 | Msa0566370:intron | 50.0% | |
| CCCCTAGAAGGGACTTCTTA+CGG | - | chr4_1:67433464-67433483 | None:intergenic | 50.0% | |
| CCGTAAGAAGTCCCTTCTAG+GGG | + | chr4_1:67433461-67433480 | Msa0566370:intron | 50.0% | |
| !! | GGGTTTTCGGGCTACTTGAT+CGG | - | chr4_1:67433538-67433557 | None:intergenic | 50.0% |
| GCCGTTCTTCTTAAACCAGC+CGG | + | chr4_1:67437019-67437038 | Msa0566370:CDS | 50.0% | |
| CATCACCAGCAACTCCAGCA+TGG | + | chr4_1:67432545-67432564 | Msa0566370:CDS | 55.0% | |
| !! | CTGGCTTGTCTTTTGGTCCC+TGG | - | chr4_1:67432573-67432592 | None:intergenic | 55.0% |
| TTTAGAGACCCGACGTTGCC+CGG | + | chr4_1:67432814-67432833 | Msa0566370:intron | 55.0% | |
| TATCTAACCCGGGCAACGTC+GGG | - | chr4_1:67432825-67432844 | None:intergenic | 55.0% | |
| GCGGGAGAAGGCAATAAGGT+GGG | - | chr4_1:67433090-67433109 | None:intergenic | 55.0% | |
| ! | ATTTTACAGGGCGCGGGAGA+AGG | - | chr4_1:67433102-67433121 | None:intergenic | 55.0% |
| ! | AGTCCCTTCTAGGGGAGTCA+TGG | + | chr4_1:67433469-67433488 | Msa0566370:intron | 55.0% |
| GGACCATGACTCCCCTAGAA+GGG | - | chr4_1:67433475-67433494 | None:intergenic | 55.0% | |
| AGGACCATGACTCCCCTAGA+AGG | - | chr4_1:67433476-67433495 | None:intergenic | 55.0% | |
| TTAGAGACCCGACGTTGCCC+GGG | + | chr4_1:67432815-67432834 | Msa0566370:intron | 60.0% | |
| CGCGGGAGAAGGCAATAAGG+TGG | - | chr4_1:67433091-67433110 | None:intergenic | 60.0% | |
| TGGCGCCATGCTGGAGTTGC+TGG | - | chr4_1:67432553-67432572 | None:intergenic | 65.0% | |
| AGCAACTCCAGCATGGCGCC+AGG | + | chr4_1:67432552-67432571 | Msa0566370:CDS | 65.0% | |
| GCAACTCCAGCATGGCGCCA+GGG | + | chr4_1:67432553-67432572 | Msa0566370:CDS | 65.0% | |
| TTTGGTCCCTGGCGCCATGC+TGG | - | chr4_1:67432562-67432581 | None:intergenic | 65.0% | |
| GGGCGCGGGAGAAGGCAATA+AGG | - | chr4_1:67433094-67433113 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 67432538 | 67437054 | 67432538 | ID=Msa0566370;Name=Msa0566370 |
| chr4_1 | mRNA | 67432538 | 67437054 | 67432538 | ID=Msa0566370-mRNA-1;Parent=Msa0566370;Name=Msa0566370-mRNA-1;_AED=0.28;_eAED=0.27;_QI=0|0|0|1|1|1|2|0|161 |
| chr4_1 | exon | 67432538 | 67432757 | 67432538 | ID=Msa0566370-mRNA-1:exon:22125;Parent=Msa0566370-mRNA-1 |
| chr4_1 | exon | 67436789 | 67437054 | 67436789 | ID=Msa0566370-mRNA-1:exon:22126;Parent=Msa0566370-mRNA-1 |
| chr4_1 | CDS | 67432538 | 67432757 | 67432538 | ID=Msa0566370-mRNA-1:cds;Parent=Msa0566370-mRNA-1 |
| chr4_1 | CDS | 67436789 | 67437054 | 67436789 | ID=Msa0566370-mRNA-1:cds;Parent=Msa0566370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
