AlfalfaGEDB | Msa0566380

M. sativa cultivar zhongmu-4 / Msa0566380

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0566380	AET04474.1	92.308	156	12	0	1	156	1	156	1.93e-95	283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0566380	G7L9K0	92.308	156	12	0	1	156	1	156	9.24e-96	283

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TFs/TRs:

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Gene ID	Type	Classification
Msa0566380	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 30 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTTGTTACGAACAG+TGG	0.644687	4_1:+67443170	Msa0566380:CDS
AAATGAAATTGGCCTTGGAG+CGG	0.608265	4_1:+67443582	Msa0566380:CDS
AGATGAGTCATCTCCAGAAG+AGG	0.604525	4_1:+67443522	Msa0566380:CDS
AGCAACTCCAGCATGGCGCC+AGG	0.436034	4_1:+67443052	Msa0566380:CDS
ATCTGAGTCAGAAACATCAA+TGG	0.564933	4_1:-67443231	None:intergenic
ATTCTCAAACTACGTCTCTT+TGG	0.299791	4_1:-67443424	None:intergenic
CAATCAGAAGATGACACCGA+TGG	0.614119	4_1:+67443450	Msa0566380:CDS
CATAAAACTGGCTTGTCTTT+TGG	0.254968	4_1:-67443077	None:intergenic
CATCACCAGCAACTCCAGCA+TGG	0.651498	4_1:+67443045	Msa0566380:CDS
CCAAGGCCAATTTCATTTGA+AGG	0.421742	4_1:-67443577	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGACTAAGATACCAAAACT+GGG	+	chr4_1:67443109-67443128	Msa0566380:CDS	35.0%
GAAAACAACGTTTGAGAGAA+TGG	-	chr4_1:67443148-67443167	None:intergenic	35.0%
ATCTGAGTCAGAAACATCAA+TGG	-	chr4_1:67443234-67443253	None:intergenic	35.0%
ATTCTCAAACTACGTCTCTT+TGG	-	chr4_1:67443427-67443446	None:intergenic	35.0%
TCTTGTTGAAACTTCTCCAT+CGG	-	chr4_1:67443469-67443488	None:intergenic	35.0%
CCACATGCATTGCATAAAAC+TGG	-	chr4_1:67443092-67443111	None:intergenic	40.0%
GGACTAAGATACCAAAACTG+GGG	+	chr4_1:67443110-67443129	Msa0566380:CDS	40.0%
GTTTGAGAGAATGGTCTTTG+AGG	-	chr4_1:67443139-67443158	None:intergenic	40.0%
TCAAACAATAAGGCCTCTTC+TGG	-	chr4_1:67443538-67443557	None:intergenic	40.0%
CCAAGGCCAATTTCATTTGA+AGG	-	chr4_1:67443580-67443599	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	67443038	67443636	67443038	ID=Msa0566380;Name=Msa0566380
chr4_1	mRNA	67443038	67443636	67443038	ID=Msa0566380-mRNA-1;Parent=Msa0566380;Name=Msa0566380-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|1\|1\|1\|2\|0\|156
chr4_1	exon	67443038	67443257	67443038	ID=Msa0566380-mRNA-1:exon:22123;Parent=Msa0566380-mRNA-1
chr4_1	exon	67443386	67443636	67443386	ID=Msa0566380-mRNA-1:exon:22124;Parent=Msa0566380-mRNA-1
chr4_1	CDS	67443038	67443257	67443038	ID=Msa0566380-mRNA-1:cds;Parent=Msa0566380-mRNA-1
chr4_1	CDS	67443386	67443636	67443386	ID=Msa0566380-mRNA-1:cds;Parent=Msa0566380-mRNA-1

Gene Sequence

>Msa0566380

ATGGATTCATCACCAGCAACTCCAGCATGGCGCCAGGGACCAAAAGACAAGCCAGTTTTATGCAATGCATGTGGACTAAGATACCAAAACTGGGGAAACCTCAAAGACCATTCTCTCAAACGTTGTTTTCCAAAAGAACTTGTTACGAACAGTGGCAACAGTAGCAACAACAGTCTCAAAGAAAGTTCATCAACCATTGATGTTTCTGACTCAGATAATGATGAAAAAGATTCAGATTCATGCAAGTCTGCAGTCTCTCCAAAGAGACGTAGTTTGAGAATTATCAATCAGAAGATGACACCGATGGAGAAGTTTCAACAAGAACTTCTCGATGAGTTGAAAAATCACGAGATACCAGATGAGTCATCTCCAGAAGAGGCCTTATTGTTTGAAAATGTGAACAACTTCATACCTTCAAATGAAATTGGCCTTGGAGCGGTTCTTCTTAAACCAGACGGTTCTTCTATGTAG

Protein sequence

>Msa0566380

MDSSPATPAWRQGPKDKPVLCNACGLRYQNWGNLKDHSLKRCFPKELVTNSGNSSNNSLKESSSTIDVSDSDNDEKDSDSCKSAVSPKRRSLRIINQKMTPMEKFQQELLDELKNHEIPDESSPEEALLFENVNNFIPSNEIGLGAVLLKPDGSSM*