AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568210 MtrunA17_Chr8g0382861 86.695 233 5 1 1 207 1 233 2.64e-147 414
Msa0568210 MtrunA17_Chr3g0124601 56.780 236 70 3 4 207 3 238 1.37e-91 273
Msa0568210 MtrunA17_Chr5g0424861 41.667 228 99 4 15 208 1 228 2.51e-53 174
Msa0568210 MtrunA17_Chr3g0115371 38.496 226 106 2 15 207 1 226 3.55e-51 169
Msa0568210 MtrunA17_Chr8g0353501 48.603 179 85 3 35 211 167 340 1.48e-49 167
Msa0568210 MtrunA17_Chr7g0256211 50.000 158 72 3 52 207 170 322 7.44e-47 160
Msa0568210 MtrunA17_Chr5g0422771 49.375 160 76 2 52 210 182 337 1.87e-46 159
Msa0568210 MtrunA17_Chr7g0258321 43.956 182 98 2 30 207 155 336 3.70e-46 158
Msa0568210 MtrunA17_Chr1g0210151 45.342 161 86 2 52 210 57 217 1.72e-45 154
Msa0568210 MtrunA17_Chr4g0026401 45.614 171 84 2 38 207 178 340 1.68e-44 154
Msa0568210 MtrunA17_Chr1g0174701 41.038 212 118 4 3 207 168 379 2.17e-44 154
Msa0568210 MtrunA17_Chr2g0321431 48.466 163 74 3 46 205 191 346 2.47e-44 154
Msa0568210 MtrunA17_Chr3g0093451 45.342 161 80 4 52 204 49 209 1.05e-41 140
Msa0568210 MtrunA17_Chr5g0424851 49.462 93 47 0 115 207 223 315 2.00e-24 99.8
Msa0568210 MtrunA17_Chr5g0424851 45.098 102 56 0 107 208 1 102 2.47e-24 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568210 AT5G65210.5 51.452 241 80 4 4 207 3 243 1.51e-81 248
Msa0568210 AT5G65210.7 51.452 241 80 4 4 207 3 243 1.51e-81 248
Msa0568210 AT5G65210.3 51.452 241 80 4 4 207 3 243 1.51e-81 248
Msa0568210 AT5G65210.1 51.452 241 80 4 4 207 3 243 1.51e-81 248
Msa0568210 AT5G65210.2 51.452 241 80 4 4 207 3 243 1.51e-81 248
Msa0568210 AT5G65210.4 51.452 241 80 4 4 207 3 243 1.51e-81 248
Msa0568210 AT5G10030.5 50.209 239 82 3 4 207 3 239 9.04e-79 240
Msa0568210 AT5G10030.3 50.209 239 82 3 4 207 3 239 9.04e-79 240
Msa0568210 AT5G10030.1 50.209 239 82 3 4 207 3 239 9.04e-79 240
Msa0568210 AT5G10030.4 50.209 239 82 3 4 207 3 239 9.04e-79 240
Msa0568210 AT5G10030.2 50.209 239 82 3 4 207 3 239 9.04e-79 240
Msa0568210 AT5G65210.6 63.354 161 58 1 48 207 13 173 5.12e-73 223
Msa0568210 AT1G22070.1 47.107 242 82 4 13 208 17 258 3.63e-69 216
Msa0568210 AT1G77920.1 44.622 251 87 3 1 208 2 243 6.20e-66 207
Msa0568210 AT3G12250.6 49.727 183 85 3 30 210 27 204 9.24e-54 175
Msa0568210 AT3G12250.2 49.727 183 85 3 30 210 27 204 9.24e-54 175
Msa0568210 AT3G12250.7 49.727 183 85 3 30 210 27 204 9.24e-54 175
Msa0568210 AT3G12250.1 49.727 183 85 3 30 210 27 204 9.24e-54 175
Msa0568210 AT3G12250.3 49.457 184 86 3 30 211 21 199 1.49e-53 174
Msa0568210 AT3G12250.5 52.976 168 72 3 45 210 15 177 2.14e-53 173
Msa0568210 AT3G12250.4 49.457 184 86 3 30 211 52 230 4.83e-53 174
Msa0568210 AT5G06950.2 52.071 169 74 3 45 211 42 205 1.45e-52 172
Msa0568210 AT5G06950.4 52.071 169 74 3 45 211 42 205 1.45e-52 172
Msa0568210 AT5G06950.1 52.071 169 74 3 45 211 42 205 1.45e-52 172
Msa0568210 AT5G06950.5 52.071 169 74 3 45 211 42 205 1.45e-52 172
Msa0568210 AT5G06950.3 52.071 169 74 3 45 211 42 205 1.45e-52 172
Msa0568210 AT5G06960.3 50.311 161 75 2 52 211 29 185 1.97e-49 163
Msa0568210 AT5G06960.2 50.311 161 75 2 52 211 49 205 3.26e-49 163
Msa0568210 AT5G06960.1 50.311 161 75 2 52 211 49 205 3.26e-49 163
Msa0568210 AT5G06839.1 49.701 167 77 3 52 211 121 287 1.25e-48 164
Msa0568210 AT5G06839.3 49.701 167 77 3 52 211 164 330 1.81e-48 164
Msa0568210 AT1G08320.2 49.091 165 76 3 45 207 50 208 6.23e-48 161
Msa0568210 AT1G08320.5 49.091 165 76 3 45 207 50 208 6.23e-48 161
Msa0568210 AT1G08320.1 49.091 165 76 3 45 207 174 332 5.35e-47 161
Msa0568210 AT1G08320.4 49.091 165 76 3 45 207 174 332 5.35e-47 161
Msa0568210 AT1G08320.3 49.091 165 76 3 45 207 174 332 5.35e-47 161
Msa0568210 AT5G06839.2 49.405 168 77 4 52 211 121 288 7.19e-47 159
Msa0568210 AT1G68640.1 45.000 160 85 2 52 210 169 326 1.32e-42 149

Find 99 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCAGTGATATACAAAT+TGG 0.178312 4_1:+69821636 Msa0568210:CDS
CATAATCACCTATTCATAAA+TGG 0.187077 4_1:-69823380 None:intergenic
TGATTATTTAACTTCATTTC+AGG 0.206692 4_1:-69819553 None:intergenic
GGATTGGATTCTAATAATTT+AGG 0.214016 4_1:+69820650 Msa0568210:CDS
TAAGAGTCGTTTGAAGAAAA+AGG 0.214551 4_1:+69820355 Msa0568210:CDS
TAGCTCCATGATCATGATTA+TGG 0.229163 4_1:+69822588 Msa0568210:three_prime_UTR
TCTGTCAATGGTTCAATTAA+AGG 0.231131 4_1:-69821929 None:intergenic
TGCTCGATGGCTGCTTGCTT+TGG 0.235184 4_1:+69822453 Msa0568210:three_prime_UTR
TGGCTGCTTGCTTTGGGACT+TGG 0.250428 4_1:+69822460 Msa0568210:three_prime_UTR
GTTCTTCCCATATAGTAAAT+TGG 0.257991 4_1:-69819495 None:intergenic
CTATACACCAATTTACTATA+TGG 0.263999 4_1:+69819488 Msa0568210:CDS
CATTTATGAATAGGTGATTA+TGG 0.271786 4_1:+69823381 Msa0568210:three_prime_UTR
ATTCCAACATTTGTCTGTTT+AGG 0.286691 4_1:-69821593 None:intergenic
GCTGAAGAATAAACTTGTTT+AGG 0.302550 4_1:-69823490 None:intergenic
GTGATGAGATTTGCAGGTTC+TGG 0.306037 4_1:+69821904 Msa0568210:three_prime_UTR
ATGTCCAGGGTCTCGGTTGC+TGG 0.307526 4_1:+69822644 Msa0568210:three_prime_UTR
CAAATTGGGGAACTTGTAAA+TGG 0.313309 4_1:+69821651 Msa0568210:CDS
TTTGCTGGCTCTGTAAATTC+AGG 0.350309 4_1:+69820674 Msa0568210:CDS
GCATGACTTCTCAAGATTAT+AGG 0.355362 4_1:-69821969 None:intergenic
GGCTGCTTGCTTTGGGACTT+GGG 0.361576 4_1:+69822461 Msa0568210:three_prime_UTR
AAATTGCAGGGATTGTATAT+TGG 0.363352 4_1:+69820623 Msa0568210:intron
GCTCGATGGCTGCTTGCTTT+GGG 0.367057 4_1:+69822454 Msa0568210:three_prime_UTR
GATTACCTCTTTCTCGTACT+TGG 0.376739 4_1:-69819156 None:intergenic
TGTTCTATAGACAAACTAAT+TGG 0.379987 4_1:-69819408 None:intergenic
TGAAATGAAGTTAAATAATC+AGG 0.391737 4_1:+69819555 Msa0568210:CDS
CATATAGTAAATTGGTGTAT+AGG 0.396079 4_1:-69819487 None:intergenic
ATAACTCCCCATTTATGAAT+AGG 0.399336 4_1:+69823372 Msa0568210:three_prime_UTR
ATGTTTGTGATGAGATTTGC+AGG 0.400423 4_1:+69821898 Msa0568210:three_prime_UTR
ATTGTATATTGGTGGTGGAT+TGG 0.406379 4_1:+69820634 Msa0568210:CDS
ATAATCACCTATTCATAAAT+GGG 0.406860 4_1:-69823379 None:intergenic
TTTGTTTCCTCAAGAAATAT+CGG 0.409722 4_1:+69819454 Msa0568210:CDS
AATAGAGAGGCTGGAAGCTC+TGG 0.410741 4_1:+69822108 Msa0568210:three_prime_UTR
AGGTGTTACCTTTAGAAGTT+CGG 0.411150 4_1:-69821808 None:intergenic
ATATCAGTGATATACAAATT+GGG 0.413722 4_1:+69821637 Msa0568210:CDS
CTGTCAATGGTTCAATTAAA+GGG 0.420015 4_1:-69821928 None:intergenic
AACGTTAACACTTGATAAGC+TGG 0.424854 4_1:-69822612 None:intergenic
TCGACCCTCCGAACTTCTAA+AGG 0.428847 4_1:+69821800 Msa0568210:CDS
AACCGTTGTTCCTCTGTCAA+TGG 0.441867 4_1:-69821941 None:intergenic
TAAGGGATTTGAGCAAACTT+TGG 0.444298 4_1:+69822501 Msa0568210:three_prime_UTR
TGTTGTGCTCTTTCTATGAT+CGG 0.445506 4_1:+69819230 Msa0568210:five_prime_UTR
GTTGATCAAGTATATCGATT+AGG 0.451011 4_1:-69821828 None:intergenic
GTGAATACTTTCAACGCCTA+AGG 0.464354 4_1:+69822483 Msa0568210:three_prime_UTR
TATACACCAATTTACTATAT+GGG 0.471035 4_1:+69819489 Msa0568210:CDS
AGATGCCCTTTCACAAGGTA+TGG 0.480625 4_1:+69822003 Msa0568210:three_prime_UTR
AGAGCTAGATCATACAAAAC+AGG 0.481991 4_1:+69820506 Msa0568210:CDS
GGATATTGCAATAGAGAGGC+TGG 0.484290 4_1:+69822099 Msa0568210:three_prime_UTR
AAAGGGCATCTTCTGCTTGT+CGG 0.484492 4_1:-69821991 None:intergenic
ACATAACGGCTTTGAACTAT+CGG 0.486597 4_1:+69819192 Msa0568210:five_prime_UTR
TCTGGCTAGCTTTGTGAACC+AGG 0.487895 4_1:+69822126 Msa0568210:three_prime_UTR
CAGGGATTGTATATTGGTGG+TGG 0.489623 4_1:+69820629 Msa0568210:intron
AAGAACCAAGTACGAGAAAG+AGG 0.504303 4_1:+69819151 Msa0568210:five_prime_UTR
CTGGGCCATAATCATGATCA+TGG 0.510413 4_1:-69822593 None:intergenic
CTTGTTGACACAGTTGCAGC+AGG 0.514923 4_1:+69822043 Msa0568210:three_prime_UTR
AAAGTTTGCTCAAATCCCTT+AGG 0.521782 4_1:-69822499 None:intergenic
AGACCTAAACAGACAAATGT+TGG 0.522384 4_1:+69821590 Msa0568210:CDS
CCTGCCAGCAACCGAGACCC+TGG 0.524594 4_1:-69822648 None:intergenic
TGGTTCTTCCTCGATTTCCT+CGG 0.527196 4_1:-69819136 None:intergenic
TGCAGGTTCACGAGGACGAT+TGG 0.528063 4_1:-69822525 None:intergenic
ACAAAATATGTTATCTTCCG+AGG 0.540788 4_1:+69819119 None:intergenic
CTGCTGTCATATTTCTACCA+TGG 0.544521 4_1:+69821867 Msa0568210:three_prime_UTR
TGAATACTTTCAACGCCTAA+GGG 0.549102 4_1:+69822484 Msa0568210:three_prime_UTR
ATGTGGAAAACAACAGCTGA+AGG 0.550259 4_1:+69821753 Msa0568210:CDS
ACAAATTGAGAAGATGATGA+AGG 0.553463 4_1:-69819436 None:intergenic
AGACAAATGTTGGAATTGAA+AGG 0.555362 4_1:+69821600 Msa0568210:CDS
ACAGGCTGATCATCTTCGAC+AGG 0.558370 4_1:+69822387 Msa0568210:intron
CAAATCAATACATAACATAA+CGG 0.558636 4_1:+69819178 Msa0568210:five_prime_UTR
GAAGAACATTTCAAGAGTAA+TGG 0.562707 4_1:+69819511 Msa0568210:CDS
GCAGCAGGACAACTCGTTGA+AGG 0.566836 4_1:+69822058 Msa0568210:three_prime_UTR
CTCTTGCATGAAGACTATGC+AGG 0.569640 4_1:-69822542 None:intergenic
TCGATATACTTGATCAACAT+GGG 0.573479 4_1:+69821833 Msa0568210:exon
AGGAACTTACATTCCACAGA+TGG 0.575188 4_1:+69822078 Msa0568210:three_prime_UTR
CCGTACGTCAAACTGCTCGA+TGG 0.578154 4_1:+69822440 Msa0568210:three_prime_UTR
TATCAGTGATATACAAATTG+GGG 0.581840 4_1:+69821638 Msa0568210:CDS
ATATACACCGATATTTCTTG+AGG 0.591644 4_1:-69819461 None:intergenic
TTGCAGGGATTGTATATTGG+TGG 0.592067 4_1:+69820626 Msa0568210:intron
ATCGATATACTTGATCAACA+TGG 0.593818 4_1:+69821832 Msa0568210:exon
TAAGATGGAGTATGAACACT+GGG 0.600728 4_1:+69821563 Msa0568210:CDS
ACGTTAACACTTGATAAGCT+GGG 0.601137 4_1:-69822611 None:intergenic
TGTTACCTTTAGAAGTTCGG+AGG 0.601165 4_1:-69821805 None:intergenic
TTAAGATGGAGTATGAACAC+TGG 0.603260 4_1:+69821562 Msa0568210:CDS
CACAAACATACATTATGCCA+TGG 0.607008 4_1:-69821884 None:intergenic
ATTAGTTTGTCTATAGAACA+TGG 0.607742 4_1:+69819411 Msa0568210:exon
AACCATTGACAGAGGAACAA+CGG 0.614266 4_1:+69821939 Msa0568210:three_prime_UTR
AGCAACCGAGACCCTGGACA+TGG 0.617265 4_1:-69822642 None:intergenic
GCAGAAGATGCCCTTTCACA+AGG 0.620831 4_1:+69821998 Msa0568210:three_prime_UTR
TTTAATTGAACCATTGACAG+AGG 0.625048 4_1:+69821931 Msa0568210:three_prime_UTR
GTTATCTTCCGAGGAAATCG+AGG 0.628841 4_1:+69819128 Msa0568210:five_prime_UTR
TCTATGTTATCACTGGCATG+TGG 0.630097 4_1:+69821736 Msa0568210:CDS
CCATCGAGCAGTTTGACGTA+CGG 0.630335 4_1:-69822440 None:intergenic
TCTATTGCAATATCCATCTG+TGG 0.636700 4_1:-69822091 None:intergenic
GTTACCTTTAGAAGTTCGGA+GGG 0.640489 4_1:-69821804 None:intergenic
GAAGACTATGCAGGTTCACG+AGG 0.645466 4_1:-69822533 None:intergenic
AGATGGATATTGCAATAGAG+AGG 0.647680 4_1:+69822095 Msa0568210:three_prime_UTR
TAATCACCTATTCATAAATG+GGG 0.647734 4_1:-69823378 None:intergenic
TGTGGAAAACAACAGCTGAA+GGG 0.647786 4_1:+69821754 Msa0568210:CDS
ACGTCTCGCGCAAAATCGAG+AGG 0.654340 4_1:+69820325 Msa0568210:CDS
GTTTGAAATAGTGATTCATG+AGG 0.660995 4_1:-69821674 None:intergenic
CGATATACTTGATCAACATG+GGG 0.669272 4_1:+69821834 Msa0568210:exon
GATGGAGTATGAACACTGGG+TGG 0.682481 4_1:+69821566 Msa0568210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTTAAATAAAAAAGAT+GGG - chr4_1:69823056-69823075 None:intergenic 10.0%
!! TTATTCTTAAATAAAAAAGA+TGG - chr4_1:69823057-69823076 None:intergenic 10.0%
!! AAGTATAAATTTAGTAAACT+TGG - chr4_1:69819588-69819607 None:intergenic 15.0%
!! TCATTAACAAAATATCAAAA+TGG - chr4_1:69820082-69820101 None:intergenic 15.0%
!!! TTTTGATATTTTGTTAATGA+AGG + chr4_1:69820082-69820101 Msa0568210:intron 15.0%
!!! TAAGTTTTTATAAAGCAAAA+AGG - chr4_1:69820920-69820939 None:intergenic 15.0%
!!! TTGATATATAATATTAGCTT+TGG + chr4_1:69821444-69821463 Msa0568210:intron 15.0%
!!! TGATATATAATATTAGCTTT+GGG + chr4_1:69821445-69821464 Msa0568210:intron 15.0%
!! TTGACAATAATAAACTTAAT+TGG - chr4_1:69822367-69822386 None:intergenic 15.0%
!! TTAAAATACTAATACATGTT+TGG + chr4_1:69822732-69822751 Msa0568210:intron 15.0%
!! TAAAATACTAATACATGTTT+GGG + chr4_1:69822733-69822752 Msa0568210:intron 15.0%
!!! ATACAATTGTTTTATATTGA+GGG - chr4_1:69822822-69822841 None:intergenic 15.0%
!!! AATACAATTGTTTTATATTG+AGG - chr4_1:69822823-69822842 None:intergenic 15.0%
!! ATTCTTAAATAAAAAAGATG+GGG - chr4_1:69823055-69823074 None:intergenic 15.0%
!!! CTTTTTTATTTAAGAATAAG+AGG + chr4_1:69823058-69823077 Msa0568210:intron 15.0%
!! CAAATCAATACATAACATAA+CGG + chr4_1:69819178-69819197 Msa0568210:five_prime_UTR 20.0%
!! TGATTGTTTATATGACTAAA+TGG + chr4_1:69819380-69819399 Msa0568210:intron 20.0%
!! TATACACCAATTTACTATAT+GGG + chr4_1:69819489-69819508 Msa0568210:CDS 20.0%
!!! TGATTATTTAACTTCATTTC+AGG - chr4_1:69819556-69819575 None:intergenic 20.0%
!! TGAAATGAAGTTAAATAATC+AGG + chr4_1:69819555-69819574 Msa0568210:CDS 20.0%
!! AGTTAACAAAGTTACTAATA+AGG + chr4_1:69819741-69819760 Msa0568210:intron 20.0%
!!! AAACTTTGAGAAAATTCTTT+AGG + chr4_1:69820858-69820877 Msa0568210:intron 20.0%
!!! TTACTGCAGATAATATATTT+TGG + chr4_1:69820937-69820956 Msa0568210:intron 20.0%
!! ACAAAAGCAACATTAATTAA+AGG - chr4_1:69821072-69821091 None:intergenic 20.0%
!! AGTAACAAAATTTATTAGAG+AGG + chr4_1:69821211-69821230 Msa0568210:intron 20.0%
!! GTAACAAAATTTATTAGAGA+GGG + chr4_1:69821212-69821231 Msa0568210:intron 20.0%
!!! GAAATTTTGGAAGAAATTAT+TGG - chr4_1:69821294-69821313 None:intergenic 20.0%
!!! TCTATTCTAAAACTAGTTTT+TGG + chr4_1:69821503-69821522 Msa0568210:intron 20.0%
!!! AGTTGTTATTTCTGTAAATT+AGG - chr4_1:69821541-69821560 None:intergenic 20.0%
!!! AGAAATAACAACTTTTAAGA+TGG + chr4_1:69821548-69821567 Msa0568210:intron 20.0%
!! ATATCAGTGATATACAAATT+GGG + chr4_1:69821637-69821656 Msa0568210:CDS 20.0%
!!! TTTTATCAGAATTATGCATA+TGG + chr4_1:69822271-69822290 Msa0568210:intron 20.0%
!! CACAAATTACCAAATTAAAA+AGG + chr4_1:69822315-69822334 Msa0568210:intron 20.0%
!!! CTAGTTTAACCTTTTTAATT+TGG - chr4_1:69822327-69822346 None:intergenic 20.0%
!! CAAATTAAAAAGGTTAAACT+AGG + chr4_1:69822325-69822344 Msa0568210:intron 20.0%
!! TAAGTTTATTATTGTCAAAC+AGG + chr4_1:69822369-69822388 Msa0568210:intron 20.0%
!! AAAAATTCTAAACTAAGTGA+GGG - chr4_1:69822708-69822727 None:intergenic 20.0%
!! AAAAAATTCTAAACTAAGTG+AGG - chr4_1:69822709-69822728 None:intergenic 20.0%
!! AAAATACTAATACATGTTTG+GGG + chr4_1:69822734-69822753 Msa0568210:intron 20.0%
!!! TTTTACGTCATATTAGTAAT+TGG - chr4_1:69822848-69822867 None:intergenic 20.0%
!! AATTGGATTTAAGAATATGT+TGG + chr4_1:69822869-69822888 Msa0568210:intron 20.0%
!!! AAACAAGTCTATTTTTGAAT+CGG + chr4_1:69823082-69823101 Msa0568210:intron 20.0%
!! TTGCTAGAATATTGTAAAAA+TGG + chr4_1:69823230-69823249 Msa0568210:intron 20.0%
!! ATAATCACCTATTCATAAAT+GGG - chr4_1:69823382-69823401 None:intergenic 20.0%
! TGTAAAAGCAAAAGTCAAAT+AGG - chr4_1:69819318-69819337 None:intergenic 25.0%
!!! ATTTGACTTTTGCTTTTACA+AGG + chr4_1:69819318-69819337 Msa0568210:intron 25.0%
! TGTTCTATAGACAAACTAAT+TGG - chr4_1:69819411-69819430 None:intergenic 25.0%
!!! ATTAGTTTGTCTATAGAACA+TGG + chr4_1:69819411-69819430 Msa0568210:exon 25.0%
! TTTGTTTCCTCAAGAAATAT+CGG + chr4_1:69819454-69819473 Msa0568210:CDS 25.0%
! CATATAGTAAATTGGTGTAT+AGG - chr4_1:69819490-69819509 None:intergenic 25.0%
! CTATACACCAATTTACTATA+TGG + chr4_1:69819488-69819507 Msa0568210:CDS 25.0%
! TAGTAACTTTGTTAACTTCT+TGG - chr4_1:69819738-69819757 None:intergenic 25.0%
! GTATCAAATTGAACTTAACA+TGG - chr4_1:69819962-69819981 None:intergenic 25.0%
!! ATTGGTCAACTTTTCAAAAA+TGG - chr4_1:69820020-69820039 None:intergenic 25.0%
! AATTATTGCATTAGTCCTTT+CGG - chr4_1:69820043-69820062 None:intergenic 25.0%
!!! TGCCTTTTTTTATGCTTATA+AGG + chr4_1:69820279-69820298 Msa0568210:intron 25.0%
! CACCTTATAAGCATAAAAAA+AGG - chr4_1:69820284-69820303 None:intergenic 25.0%
! GATATTGAACAATATGAAGT+AGG - chr4_1:69820560-69820579 None:intergenic 25.0%
! GGATTGGATTCTAATAATTT+AGG + chr4_1:69820650-69820669 Msa0568210:CDS 25.0%
!!! TCTAATAATTTAGGTTTTGC+TGG + chr4_1:69820659-69820678 Msa0568210:CDS 25.0%
! GTTTGTCTGTTATTAAATTC+TGG + chr4_1:69820696-69820715 Msa0568210:intron 25.0%
! CAAAAAAGTGATTTCATCAT+AGG - chr4_1:69820764-69820783 None:intergenic 25.0%
! ACATTAATTAAAGGAAAGGA+GGG - chr4_1:69821063-69821082 None:intergenic 25.0%
! AACATTAATTAAAGGAAAGG+AGG - chr4_1:69821064-69821083 None:intergenic 25.0%
! AGCAACATTAATTAAAGGAA+AGG - chr4_1:69821067-69821086 None:intergenic 25.0%
! CATATCAGTGATATACAAAT+TGG + chr4_1:69821636-69821655 Msa0568210:CDS 25.0%
! TATCAGTGATATACAAATTG+GGG + chr4_1:69821638-69821657 Msa0568210:CDS 25.0%
! AATATATAACATGCATTACC+TGG - chr4_1:69822147-69822166 None:intergenic 25.0%
! CGTATAATTTAGATTAGATG+AGG + chr4_1:69822171-69822190 Msa0568210:intron 25.0%
!! TTTGGTAATTTGTGTGTTAA+TGG - chr4_1:69822309-69822328 None:intergenic 25.0%
! TTTGTAATGTAGTAACTACT+AGG - chr4_1:69822798-69822817 None:intergenic 25.0%
! CTAATATGACGTAAAACAAT+TGG + chr4_1:69822852-69822871 Msa0568210:intron 25.0%
!!! AACAAGTCTATTTTTGAATC+GGG + chr4_1:69823083-69823102 Msa0568210:intron 25.0%
!!! TAGCGATACACTATATTTTT+TGG - chr4_1:69823143-69823162 None:intergenic 25.0%
! TACAATATTCTAGCAAAGAA+AGG - chr4_1:69823226-69823245 None:intergenic 25.0%
! TAATCACCTATTCATAAATG+GGG - chr4_1:69823381-69823400 None:intergenic 25.0%
! CATAATCACCTATTCATAAA+TGG - chr4_1:69823383-69823402 None:intergenic 25.0%
! CATTTATGAATAGGTGATTA+TGG + chr4_1:69823381-69823400 Msa0568210:three_prime_UTR 25.0%
!!! CAAGGCATTTTATTGATTCT+TGG + chr4_1:69819336-69819355 Msa0568210:intron 30.0%
TGTTTATATGACTAAATGGC+AGG + chr4_1:69819384-69819403 Msa0568210:intron 30.0%
ACAAATTGAGAAGATGATGA+AGG - chr4_1:69819439-69819458 None:intergenic 30.0%
ATATACACCGATATTTCTTG+AGG - chr4_1:69819464-69819483 None:intergenic 30.0%
GTTCTTCCCATATAGTAAAT+TGG - chr4_1:69819498-69819517 None:intergenic 30.0%
GAAGAACATTTCAAGAGTAA+TGG + chr4_1:69819511-69819530 Msa0568210:CDS 30.0%
!!! GATGCTTCTTTTGGAATATT+GGG + chr4_1:69819691-69819710 Msa0568210:intron 30.0%
TAACTTTGTTAACTTCTTGG+TGG - chr4_1:69819735-69819754 None:intergenic 30.0%
! TGGGTTGAACAAAATTAATG+TGG - chr4_1:69819875-69819894 None:intergenic 30.0%
TCCATACATGTTTGATATGA+CGG - chr4_1:69819898-69819917 None:intergenic 30.0%
! GAAATACTGATTGAGCAATT+CGG - chr4_1:69820110-69820129 None:intergenic 30.0%
!!! AGCATTTTAGAACCACATTT+TGG + chr4_1:69820197-69820216 Msa0568210:intron 30.0%
TAAGAGTCGTTTGAAGAAAA+AGG + chr4_1:69820355-69820374 Msa0568210:CDS 30.0%
GATTTCTGACATTTCATAAC+AGG + chr4_1:69820431-69820450 Msa0568210:intron 30.0%
AAATTGCAGGGATTGTATAT+TGG + chr4_1:69820623-69820642 Msa0568210:intron 30.0%
AACCTACAAAATCAACTACA+AGG + chr4_1:69820827-69820846 Msa0568210:intron 30.0%
ACCTACAAAATCAACTACAA+GGG + chr4_1:69820828-69820847 Msa0568210:intron 30.0%
!! CTGCAGATAATATATTTTGG+TGG + chr4_1:69820940-69820959 Msa0568210:intron 30.0%
!!! CAGATAATATATTTTGGTGG+TGG + chr4_1:69820943-69820962 Msa0568210:intron 30.0%
! AGAGAGAAATGTTTGGAATA+AGG + chr4_1:69821183-69821202 Msa0568210:intron 30.0%
TGGATTCAGAGTTTCAAAAT+TGG - chr4_1:69821274-69821293 None:intergenic 30.0%
! TTCCAAAATTTCAAGTAAGC+TGG + chr4_1:69821302-69821321 Msa0568210:intron 30.0%
GAATAGAGTTCAATACAAGA+AGG - chr4_1:69821490-69821509 None:intergenic 30.0%
ATTCCAACATTTGTCTGTTT+AGG - chr4_1:69821596-69821615 None:intergenic 30.0%
AGACAAATGTTGGAATTGAA+AGG + chr4_1:69821600-69821619 Msa0568210:CDS 30.0%
! GTTTGAAATAGTGATTCATG+AGG - chr4_1:69821677-69821696 None:intergenic 30.0%
! GATGTTTTCTATGTTATCAC+TGG + chr4_1:69821729-69821748 Msa0568210:CDS 30.0%
! GTTGATCAAGTATATCGATT+AGG - chr4_1:69821831-69821850 None:intergenic 30.0%
ATCGATATACTTGATCAACA+TGG + chr4_1:69821832-69821851 Msa0568210:exon 30.0%
TCGATATACTTGATCAACAT+GGG + chr4_1:69821833-69821852 Msa0568210:exon 30.0%
CTGTCAATGGTTCAATTAAA+GGG - chr4_1:69821931-69821950 None:intergenic 30.0%
TCTGTCAATGGTTCAATTAA+AGG - chr4_1:69821932-69821951 None:intergenic 30.0%
TTTAATTGAACCATTGACAG+AGG + chr4_1:69821931-69821950 Msa0568210:three_prime_UTR 30.0%
! TTTTTCCATACCTTGTGAAA+GGG - chr4_1:69822011-69822030 None:intergenic 30.0%
ATTTCAACTCACATGTTCTT+TGG - chr4_1:69823016-69823035 None:intergenic 30.0%
!!! ACAAGTCTATTTTTGAATCG+GGG + chr4_1:69823084-69823103 Msa0568210:intron 30.0%
! ACTTTTGCGAAATGCAATAA+CGG + chr4_1:69823195-69823214 Msa0568210:intron 30.0%
ATGAAATTGCATGAGATGAA+TGG + chr4_1:69823256-69823275 Msa0568210:intron 30.0%
CCACATATACACCTATAATT+TGG - chr4_1:69823282-69823301 None:intergenic 30.0%
CCAAATTATAGGTGTATATG+TGG + chr4_1:69823279-69823298 Msa0568210:intron 30.0%
ATAACTCCCCATTTATGAAT+AGG + chr4_1:69823372-69823391 Msa0568210:three_prime_UTR 30.0%
!! ACATAACGGCTTTGAACTAT+CGG + chr4_1:69819192-69819211 Msa0568210:five_prime_UTR 35.0%
TGTTGTGCTCTTTCTATGAT+CGG + chr4_1:69819230-69819249 Msa0568210:five_prime_UTR 35.0%
!! TATTGATTCTTGGCAGTTCA+TGG + chr4_1:69819346-69819365 Msa0568210:intron 35.0%
TGCTAAATACCTATAGTCAG+AGG + chr4_1:69819669-69819688 Msa0568210:intron 35.0%
!!! GGATGCTTCTTTTGGAATAT+TGG + chr4_1:69819690-69819709 Msa0568210:intron 35.0%
! TTGTCGCTTCAACATAATCA+AGG + chr4_1:69819847-69819866 Msa0568210:intron 35.0%
TACATGTTTGATATGACGGT+GGG - chr4_1:69819894-69819913 None:intergenic 35.0%
ATACATGTTTGATATGACGG+TGG - chr4_1:69819895-69819914 None:intergenic 35.0%
ACCGTCATATCAAACATGTA+TGG + chr4_1:69819894-69819913 Msa0568210:intron 35.0%
TTGAGGCATAAGGAAAGAAT+GGG - chr4_1:69820155-69820174 None:intergenic 35.0%
! TTTGAGGCATAAGGAAAGAA+TGG - chr4_1:69820156-69820175 None:intergenic 35.0%
! TCTACAAAGTTTGAGGCATA+AGG - chr4_1:69820165-69820184 None:intergenic 35.0%
ATGTGACTCTACAAAGTTTG+AGG - chr4_1:69820172-69820191 None:intergenic 35.0%
ACATCCAAAATTTGGAAGCA+GGG - chr4_1:69820253-69820272 None:intergenic 35.0%
GTCGTTTGAAGAAAAAGGTT+TGG + chr4_1:69820360-69820379 Msa0568210:intron 35.0%
AGAGCTAGATCATACAAAAC+AGG + chr4_1:69820506-69820525 Msa0568210:CDS 35.0%
CATCAAGAGATTGACAAATG+AGG - chr4_1:69820598-69820617 None:intergenic 35.0%
TCTTGATGCAACAAAATTGC+AGG + chr4_1:69820610-69820629 Msa0568210:intron 35.0%
CTTGATGCAACAAAATTGCA+GGG + chr4_1:69820611-69820630 Msa0568210:intron 35.0%
!! ATTGTATATTGGTGGTGGAT+TGG + chr4_1:69820634-69820653 Msa0568210:CDS 35.0%
TGTCACTGCTCTTATAAATG+TGG + chr4_1:69820734-69820753 Msa0568210:intron 35.0%
!! TCCCTTGTAGTTGATTTTGT+AGG - chr4_1:69820832-69820851 None:intergenic 35.0%
AAAAGGACATGCATGCAAAA+AGG - chr4_1:69820903-69820922 None:intergenic 35.0%
AGTGAGGTCATTGCTAAAAT+AGG - chr4_1:69821025-69821044 None:intergenic 35.0%
TTGATGCAGAGAGAAATGTT+TGG + chr4_1:69821176-69821195 Msa0568210:intron 35.0%
!!! CTACTCCTGTGGAAATTTTT+TGG + chr4_1:69821237-69821256 Msa0568210:intron 35.0%
TCACACCAAAAAATTTCCAC+AGG - chr4_1:69821245-69821264 None:intergenic 35.0%
! AGCCAGCTTACTTGAAATTT+TGG - chr4_1:69821307-69821326 None:intergenic 35.0%
TTAGACACTACATTCTGTTC+TGG + chr4_1:69821421-69821440 Msa0568210:intron 35.0%
CAAGAAGGAAAACATACTCA+AGG - chr4_1:69821475-69821494 None:intergenic 35.0%
TTAAGATGGAGTATGAACAC+TGG + chr4_1:69821562-69821581 Msa0568210:CDS 35.0%
TAAGATGGAGTATGAACACT+GGG + chr4_1:69821563-69821582 Msa0568210:CDS 35.0%
AGACCTAAACAGACAAATGT+TGG + chr4_1:69821590-69821609 Msa0568210:CDS 35.0%
CAAATTGGGGAACTTGTAAA+TGG + chr4_1:69821651-69821670 Msa0568210:CDS 35.0%
! AGGTGTTACCTTTAGAAGTT+CGG - chr4_1:69821811-69821830 None:intergenic 35.0%
CGATATACTTGATCAACATG+GGG + chr4_1:69821834-69821853 Msa0568210:exon 35.0%
CACAAACATACATTATGCCA+TGG - chr4_1:69821887-69821906 None:intergenic 35.0%
ATGTTTGTGATGAGATTTGC+AGG + chr4_1:69821898-69821917 Msa0568210:three_prime_UTR 35.0%
GCATGACTTCTCAAGATTAT+AGG - chr4_1:69821972-69821991 None:intergenic 35.0%
! GTTTTTCCATACCTTGTGAA+AGG - chr4_1:69822012-69822031 None:intergenic 35.0%
ACAAGGTATGGAAAAACTAC+AGG + chr4_1:69822015-69822034 Msa0568210:three_prime_UTR 35.0%
CAAGGTATGGAAAAACTACA+GGG + chr4_1:69822016-69822035 Msa0568210:three_prime_UTR 35.0%
TCTATTGCAATATCCATCTG+TGG - chr4_1:69822094-69822113 None:intergenic 35.0%
AGATGGATATTGCAATAGAG+AGG + chr4_1:69822095-69822114 Msa0568210:three_prime_UTR 35.0%
TTAGATGAGGTTATGAGTAG+TGG + chr4_1:69822184-69822203 Msa0568210:intron 35.0%
TAAAACTTATACTCCTGCCA+TGG - chr4_1:69822256-69822275 None:intergenic 35.0%
TGAATACTTTCAACGCCTAA+GGG + chr4_1:69822484-69822503 Msa0568210:three_prime_UTR 35.0%
! AAAGTTTGCTCAAATCCCTT+AGG - chr4_1:69822502-69822521 None:intergenic 35.0%
TAAGGGATTTGAGCAAACTT+TGG + chr4_1:69822501-69822520 Msa0568210:three_prime_UTR 35.0%
TAGCTCCATGATCATGATTA+TGG + chr4_1:69822588-69822607 Msa0568210:three_prime_UTR 35.0%
ACGTTAACACTTGATAAGCT+GGG - chr4_1:69822614-69822633 None:intergenic 35.0%
AACGTTAACACTTGATAAGC+TGG - chr4_1:69822615-69822634 None:intergenic 35.0%
! TTTTCTTAAAGCTCACTTCC+TGG - chr4_1:69822904-69822923 None:intergenic 35.0%
AAAACTTTCCTACATGCAGT+TGG + chr4_1:69822947-69822966 Msa0568210:intron 35.0%
! TTTGAAATCCAACTGCATGT+AGG - chr4_1:69822958-69822977 None:intergenic 35.0%
GCAGTTGGATTTCAAAATGT+TGG + chr4_1:69822962-69822981 Msa0568210:intron 35.0%
!!! CAAGTCTATTTTTGAATCGG+GGG + chr4_1:69823085-69823104 Msa0568210:intron 35.0%
!!! AAGTCTATTTTTGAATCGGG+GGG + chr4_1:69823086-69823105 Msa0568210:intron 35.0%
GAGATGAATGGCCAAATTAT+AGG + chr4_1:69823268-69823287 Msa0568210:intron 35.0%
AAGAACCAAGTACGAGAAAG+AGG + chr4_1:69819151-69819170 Msa0568210:five_prime_UTR 40.0%
GATTACCTCTTTCTCGTACT+TGG - chr4_1:69819159-69819178 None:intergenic 40.0%
!! AAGAAGCATCCTCTGACTAT+AGG - chr4_1:69819681-69819700 None:intergenic 40.0%
! TAGTCAGAGGATGCTTCTTT+TGG + chr4_1:69819682-69819701 Msa0568210:intron 40.0%
AAGATTGTGTTGCACTTGCT+TGG + chr4_1:69819765-69819784 Msa0568210:intron 40.0%
! TATGGACTATGTTCTACGCA+GGG + chr4_1:69819912-69819931 Msa0568210:intron 40.0%
CACATGCAGTAACTATCTAG+GGG - chr4_1:69819939-69819958 None:intergenic 40.0%
GCACATGCAGTAACTATCTA+GGG - chr4_1:69819940-69819959 None:intergenic 40.0%
GAAAAGTTGACCAATCCGAA+AGG + chr4_1:69820025-69820044 Msa0568210:intron 40.0%
TTGCATTAGTCCTTTCGGAT+TGG - chr4_1:69820038-69820057 None:intergenic 40.0%
TGCAAAGTGAGTCCAAAATG+TGG - chr4_1:69820212-69820231 None:intergenic 40.0%
CATCCAAAATTTGGAAGCAG+GGG - chr4_1:69820252-69820271 None:intergenic 40.0%
GACATCCAAAATTTGGAAGC+AGG - chr4_1:69820254-69820273 None:intergenic 40.0%
! GCTTCCAAATTTTGGATGTC+TGG + chr4_1:69820254-69820273 Msa0568210:intron 40.0%
CAAGCCAGACATCCAAAATT+TGG - chr4_1:69820261-69820280 None:intergenic 40.0%
TTGCAGGGATTGTATATTGG+TGG + chr4_1:69820626-69820645 Msa0568210:intron 40.0%
!! TTTGCTGGCTCTGTAAATTC+AGG + chr4_1:69820674-69820693 Msa0568210:CDS 40.0%
AATAGGATTTGAGTAGCTGC+TGG - chr4_1:69821008-69821027 None:intergenic 40.0%
GAGTATCTGAATGTACAGTG+AGG - chr4_1:69821041-69821060 None:intergenic 40.0%
TCTATGTTATCACTGGCATG+TGG + chr4_1:69821736-69821755 Msa0568210:CDS 40.0%
ATGTGGAAAACAACAGCTGA+AGG + chr4_1:69821753-69821772 Msa0568210:CDS 40.0%
TGTGGAAAACAACAGCTGAA+GGG + chr4_1:69821754-69821773 Msa0568210:CDS 40.0%
! GAAGGGTTTTTCTTGTGGAT+TGG + chr4_1:69821771-69821790 Msa0568210:CDS 40.0%
! GTTACCTTTAGAAGTTCGGA+GGG - chr4_1:69821807-69821826 None:intergenic 40.0%
! TGTTACCTTTAGAAGTTCGG+AGG - chr4_1:69821808-69821827 None:intergenic 40.0%
! CTGCTGTCATATTTCTACCA+TGG + chr4_1:69821867-69821886 Msa0568210:three_prime_UTR 40.0%
AACCATTGACAGAGGAACAA+CGG + chr4_1:69821939-69821958 Msa0568210:three_prime_UTR 40.0%
AGGAACTTACATTCCACAGA+TGG + chr4_1:69822078-69822097 Msa0568210:three_prime_UTR 40.0%
GTGGAAAACGTTTGACACAA+CGG + chr4_1:69822203-69822222 Msa0568210:intron 40.0%
TGGAAAACAATGCTGATCCA+TGG + chr4_1:69822236-69822255 Msa0568210:intron 40.0%
GTGAATACTTTCAACGCCTA+AGG + chr4_1:69822483-69822502 Msa0568210:three_prime_UTR 40.0%
ACGTTCAAAAAACCATGTCC+AGG + chr4_1:69822630-69822649 Msa0568210:three_prime_UTR 40.0%
CGTTCAAAAAACCATGTCCA+GGG + chr4_1:69822631-69822650 Msa0568210:three_prime_UTR 40.0%
! ACTAATACATGTTTGGGGTG+TGG + chr4_1:69822739-69822758 Msa0568210:intron 40.0%
GGTAGTATTACTGCTACACA+CGG - chr4_1:69822777-69822796 None:intergenic 40.0%
CTACACTGTCCAAAATTCCT+GGG + chr4_1:69823303-69823322 Msa0568210:intron 40.0%
GTTATCTTCCGAGGAAATCG+AGG + chr4_1:69819128-69819147 Msa0568210:five_prime_UTR 45.0%
TGGTTCTTCCTCGATTTCCT+CGG - chr4_1:69819139-69819158 None:intergenic 45.0%
GTTGCACTTGCTTGGTATTG+CGG + chr4_1:69819773-69819792 Msa0568210:intron 45.0%
! GTATGGACTATGTTCTACGC+AGG + chr4_1:69819911-69819930 Msa0568210:intron 45.0%
GGCACATGCAGTAACTATCT+AGG - chr4_1:69819941-69819960 None:intergenic 45.0%
CTCACTTTGCACTGCAGATT+AGG + chr4_1:69820221-69820240 Msa0568210:intron 45.0%
ACTTTGCACTGCAGATTAGG+AGG + chr4_1:69820224-69820243 Msa0568210:intron 45.0%
CTTTGCACTGCAGATTAGGA+GGG + chr4_1:69820225-69820244 Msa0568210:intron 45.0%
CAGGGATTGTATATTGGTGG+TGG + chr4_1:69820629-69820648 Msa0568210:intron 45.0%
!! TTTGGTGGTGGACCTAAACT+AGG + chr4_1:69820955-69820974 Msa0568210:intron 45.0%
!! TTGGTGGTGGACCTAAACTA+GGG + chr4_1:69820956-69820975 Msa0568210:intron 45.0%
GGACCTAAACTAGGGCTTAT+TGG + chr4_1:69820964-69820983 Msa0568210:intron 45.0%
AGGCCAATAAGCCCTAGTTT+AGG - chr4_1:69820970-69820989 None:intergenic 45.0%
GCTGGCTATTATGTACCTAG+TGG + chr4_1:69821320-69821339 Msa0568210:intron 45.0%
! CAGCTGAAGGGTTTTTCTTG+TGG + chr4_1:69821766-69821785 Msa0568210:CDS 45.0%
!!! GGGTTTTTCTTGTGGATTGG+AGG + chr4_1:69821774-69821793 Msa0568210:CDS 45.0%
GTGATGAGATTTGCAGGTTC+TGG + chr4_1:69821904-69821923 Msa0568210:three_prime_UTR 45.0%
AACCGTTGTTCCTCTGTCAA+TGG - chr4_1:69821944-69821963 None:intergenic 45.0%
!! AAAGGGCATCTTCTGCTTGT+CGG - chr4_1:69821994-69822013 None:intergenic 45.0%
AGATGCCCTTTCACAAGGTA+TGG + chr4_1:69822003-69822022 Msa0568210:three_prime_UTR 45.0%
GGATATTGCAATAGAGAGGC+TGG + chr4_1:69822099-69822118 Msa0568210:three_prime_UTR 45.0%
GACACAACGGTTATGAGTAG+TGG + chr4_1:69822216-69822235 Msa0568210:intron 45.0%
AAACAATGCTGATCCATGGC+AGG + chr4_1:69822240-69822259 Msa0568210:intron 45.0%
CTCTTGCATGAAGACTATGC+AGG - chr4_1:69822545-69822564 None:intergenic 45.0%
CTGGGCCATAATCATGATCA+TGG - chr4_1:69822596-69822615 None:intergenic 45.0%
AAAAACCATGTCCAGGGTCT+CGG + chr4_1:69822637-69822656 Msa0568210:three_prime_UTR 45.0%
ACCCACTTGTTCCACTATGT+GGG + chr4_1:69822676-69822695 Msa0568210:intron 45.0%
TCTAAACTAAGTGAGGGCCA+CGG - chr4_1:69822702-69822721 None:intergenic 45.0%
ATATGTTGGCAAACTGCTCC+AGG + chr4_1:69822883-69822902 Msa0568210:intron 45.0%
! CCAGGAATTTTGGACAGTGT+AGG - chr4_1:69823305-69823324 None:intergenic 45.0%
CCTACACTGTCCAAAATTCC+TGG + chr4_1:69823302-69823321 Msa0568210:intron 45.0%
! GGTCCCCTGCTTCCAAATTT+TGG + chr4_1:69820246-69820265 Msa0568210:intron 50.0%
! GGCTTATTGGCCTCACCATT+GGG + chr4_1:69820977-69820996 Msa0568210:intron 50.0%
GATTTGAGTAGCTGCTGGTC+TGG - chr4_1:69821003-69821022 None:intergenic 50.0%
!! TAGAGAGGGTACTACTCCTG+TGG + chr4_1:69821226-69821245 Msa0568210:intron 50.0%
TTGTACACAGTGCTGCCACT+AGG - chr4_1:69821338-69821357 None:intergenic 50.0%
GATGGAGTATGAACACTGGG+TGG + chr4_1:69821566-69821585 Msa0568210:CDS 50.0%
TCGACCCTCCGAACTTCTAA+AGG + chr4_1:69821800-69821819 Msa0568210:CDS 50.0%
GCAGAAGATGCCCTTTCACA+AGG + chr4_1:69821998-69822017 Msa0568210:three_prime_UTR 50.0%
CTTGTTGACACAGTTGCAGC+AGG + chr4_1:69822043-69822062 Msa0568210:three_prime_UTR 50.0%
AATAGAGAGGCTGGAAGCTC+TGG + chr4_1:69822108-69822127 Msa0568210:three_prime_UTR 50.0%
!! TCTGGCTAGCTTTGTGAACC+AGG + chr4_1:69822126-69822145 Msa0568210:three_prime_UTR 50.0%
ACAGGCTGATCATCTTCGAC+AGG + chr4_1:69822387-69822406 Msa0568210:intron 50.0%
CCATCGAGCAGTTTGACGTA+CGG - chr4_1:69822443-69822462 None:intergenic 50.0%
GAAGACTATGCAGGTTCACG+AGG - chr4_1:69822536-69822555 None:intergenic 50.0%
GACCCACTTGTTCCACTATG+TGG + chr4_1:69822675-69822694 Msa0568210:intron 50.0%
! GCCCACATAGTGGAACAAGT+GGG - chr4_1:69822680-69822699 None:intergenic 50.0%
CACAACTTTGCCAGCAACCA+GGG - chr4_1:69823334-69823353 None:intergenic 50.0%
ACGTCTCGCGCAAAATCGAG+AGG + chr4_1:69820325-69820344 Msa0568210:CDS 55.0%
! GGGCTTATTGGCCTCACCAT+TGG + chr4_1:69820976-69820995 Msa0568210:intron 55.0%
GCAGCAGGACAACTCGTTGA+AGG + chr4_1:69822058-69822077 Msa0568210:three_prime_UTR 55.0%
CCGTACGTCAAACTGCTCGA+TGG + chr4_1:69822440-69822459 Msa0568210:three_prime_UTR 55.0%
TGCTCGATGGCTGCTTGCTT+TGG + chr4_1:69822453-69822472 Msa0568210:three_prime_UTR 55.0%
GCTCGATGGCTGCTTGCTTT+GGG + chr4_1:69822454-69822473 Msa0568210:three_prime_UTR 55.0%
!! TGGCTGCTTGCTTTGGGACT+TGG + chr4_1:69822460-69822479 Msa0568210:three_prime_UTR 55.0%
!! GGCTGCTTGCTTTGGGACTT+GGG + chr4_1:69822461-69822480 Msa0568210:three_prime_UTR 55.0%
TGCAGGTTCACGAGGACGAT+TGG - chr4_1:69822528-69822547 None:intergenic 55.0%
! GGCCCACATAGTGGAACAAG+TGG - chr4_1:69822681-69822700 None:intergenic 55.0%
TTGTTCCACTATGTGGGCCG+TGG + chr4_1:69822682-69822701 Msa0568210:intron 55.0%
! AGGGACGGACCCAGGAATTT+TGG - chr4_1:69823315-69823334 None:intergenic 55.0%
AAAATTCCTGGGTCCGTCCC+TGG + chr4_1:69823314-69823333 Msa0568210:intron 55.0%
ACTTTGCCAGCAACCAGGGA+CGG - chr4_1:69823330-69823349 None:intergenic 55.0%
GCACAACTTTGCCAGCAACC+AGG - chr4_1:69823335-69823354 None:intergenic 55.0%
! TAGCTGCTGGTCTGGCCCAA+TGG - chr4_1:69820995-69821014 None:intergenic 60.0%
AGCAACCGAGACCCTGGACA+TGG - chr4_1:69822645-69822664 None:intergenic 60.0%
ATGTCCAGGGTCTCGGTTGC+TGG + chr4_1:69822644-69822663 Msa0568210:three_prime_UTR 60.0%
! GCTGGTCTGGCCCAATGGTG+AGG - chr4_1:69820990-69821009 None:intergenic 65.0%
CAGGGTCTCGGTTGCTGGCA+GGG + chr4_1:69822649-69822668 Msa0568210:intron 65.0%
GTCTCGGTTGCTGGCAGGGA+CGG + chr4_1:69822653-69822672 Msa0568210:intron 65.0%
CCTGCCAGCAACCGAGACCC+TGG - chr4_1:69822651-69822670 None:intergenic 70.0%
CCAGGGTCTCGGTTGCTGGC+AGG + chr4_1:69822648-69822667 Msa0568210:intron 70.0%
GAGGGCCACGGCCCACATAG+TGG - chr4_1:69822690-69822709 None:intergenic 70.0%
CAGCAACCAGGGACGGACCC+AGG - chr4_1:69823323-69823342 None:intergenic 70.0%
CTGGGTCCGTCCCTGGTTGC+TGG + chr4_1:69823321-69823340 Msa0568210:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 69819122 69823503 69819122 ID=Msa0568210;Name=Msa0568210
chr4_1 mRNA 69819122 69823503 69819122 ID=Msa0568210-mRNA-1;Parent=Msa0568210;Name=Msa0568210-mRNA-1;_AED=0.20;_eAED=0.20;_QI=154|0.85|1|1|0.71|0.37|8|738|213
chr4_1 exon 69819122 69819251 69819122 ID=Msa0568210-mRNA-1:exon:23369;Parent=Msa0568210-mRNA-1
chr4_1 exon 69819406 69819576 69819406 ID=Msa0568210-mRNA-1:exon:23370;Parent=Msa0568210-mRNA-1
chr4_1 exon 69820317 69820376 69820317 ID=Msa0568210-mRNA-1:exon:23371;Parent=Msa0568210-mRNA-1
chr4_1 exon 69820453 69820527 69820453 ID=Msa0568210-mRNA-1:exon:23372;Parent=Msa0568210-mRNA-1
chr4_1 exon 69820632 69820695 69820632 ID=Msa0568210-mRNA-1:exon:23373;Parent=Msa0568210-mRNA-1
chr4_1 exon 69821550 69822147 69821550 ID=Msa0568210-mRNA-1:exon:23374;Parent=Msa0568210-mRNA-1
chr4_1 exon 69822391 69822665 69822391 ID=Msa0568210-mRNA-1:exon:23375;Parent=Msa0568210-mRNA-1
chr4_1 exon 69823343 69823503 69823343 ID=Msa0568210-mRNA-1:exon:23376;Parent=Msa0568210-mRNA-1
chr4_1 five_prime_UTR 69819122 69819251 69819122 ID=Msa0568210-mRNA-1:five_prime_utr;Parent=Msa0568210-mRNA-1
chr4_1 five_prime_UTR 69819406 69819429 69819406 ID=Msa0568210-mRNA-1:five_prime_utr;Parent=Msa0568210-mRNA-1
chr4_1 CDS 69819430 69819576 69819430 ID=Msa0568210-mRNA-1:cds;Parent=Msa0568210-mRNA-1
chr4_1 CDS 69820317 69820376 69820317 ID=Msa0568210-mRNA-1:cds;Parent=Msa0568210-mRNA-1
chr4_1 CDS 69820453 69820527 69820453 ID=Msa0568210-mRNA-1:cds;Parent=Msa0568210-mRNA-1
chr4_1 CDS 69820632 69820695 69820632 ID=Msa0568210-mRNA-1:cds;Parent=Msa0568210-mRNA-1
chr4_1 CDS 69821550 69821845 69821550 ID=Msa0568210-mRNA-1:cds;Parent=Msa0568210-mRNA-1
chr4_1 three_prime_UTR 69821846 69822147 69821846 ID=Msa0568210-mRNA-1:three_prime_utr;Parent=Msa0568210-mRNA-1
chr4_1 three_prime_UTR 69822391 69822665 69822391 ID=Msa0568210-mRNA-1:three_prime_utr;Parent=Msa0568210-mRNA-1
chr4_1 three_prime_UTR 69823343 69823503 69823343 ID=Msa0568210-mRNA-1:three_prime_utr;Parent=Msa0568210-mRNA-1
Gene Sequence

>Msa0568210

ATGGATCCTTCATCATCTTCTCAATTTGTTTCCTCAAGAAATATCGGTGTATATGATCCTATACACCAATTTACTATATGGGAAGAACATTTCAAGAGTAATGGTGATACAAGTGTATATGAACCTGAAATGAAGTTAAATAATCAGATGCAAAGACGTCTCGCGCAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATACAACAGTTAGAATCGTGTCGTTTAAAGCTGTTACAAGTAGAGCAAGAGCTAGATCATACAAAACAGGGATTGTATATTGGTGGTGGATTGGATTCTAATAATTTAGGTTTTGCTGGCTCTGTAAATTCAGAAATAACAACTTTTAAGATGGAGTATGAACACTGGGTGGAAGACCTAAACAGACAAATGTTGGAATTGAAAGGTGCTTTAAGTGCTCATATCAGTGATATACAAATTGGGGAACTTGTAAATGGCCTCATGAATCACTATTTCAAACTATTTTGCATGAAATCTGATGCTGCAAAAGTAGATGTTTTCTATGTTATCACTGGCATGTGGAAAACAACAGCTGAAGGGTTTTTCTTGTGGATTGGAGGTTTTCGACCCTCCGAACTTCTAAAGGTAACACCTAATCGATATACTTGA
Protein sequence

>Msa0568210

MDPSSSSQFVSSRNIGVYDPIHQFTIWEEHFKSNGDTSVYEPEMKLNNQMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLLQVEQELDHTKQGLYIGGGLDSNNLGFAGSVNSEITTFKMEYEHWVEDLNRQMLELKGALSAHISDIQIGELVNGLMNHYFKLFCMKSDAAKVDVFYVITGMWKTTAEGFFLWIGGFRPSELLKVTPNRYT*