Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568640 | RHN42487.1 | 56.707 | 164 | 48 | 1 | 1 | 141 | 89 | 252 | 2.75e-50 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568640 | sp|A2YGR5|SPL12_ORYSI | 37.500 | 152 | 67 | 2 | 3 | 126 | 140 | 291 | 9.60e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568640 | A0A396GV41 | 56.707 | 164 | 48 | 1 | 1 | 141 | 89 | 252 | 1.31e-50 | 172 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0568640 | TF | SBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568640 | MtrunA17_Chr8g0377421 | 56.707 | 164 | 48 | 1 | 1 | 141 | 89 | 252 | 2.53e-54 | 172 |
| Msa0568640 | MtrunA17_Chr3g0122411 | 58.537 | 123 | 46 | 1 | 19 | 141 | 168 | 285 | 1.91e-41 | 142 |
| Msa0568640 | MtrunA17_Chr8g0360361 | 61.429 | 70 | 27 | 0 | 36 | 105 | 80 | 149 | 1.79e-24 | 92.8 |
| Msa0568640 | MtrunA17_Chr3g0132091 | 48.980 | 98 | 48 | 1 | 35 | 132 | 87 | 182 | 5.50e-24 | 95.1 |
| Msa0568640 | MtrunA17_Chr8g0377401 | 52.128 | 94 | 22 | 1 | 25 | 95 | 143 | 236 | 5.51e-24 | 93.6 |
| Msa0568640 | MtrunA17_Chr8g0386271 | 49.000 | 100 | 48 | 1 | 35 | 134 | 113 | 209 | 1.30e-21 | 89.0 |
| Msa0568640 | MtrunA17_Chr7g0231911 | 54.444 | 90 | 37 | 2 | 35 | 120 | 163 | 252 | 2.01e-21 | 87.8 |
| Msa0568640 | MtrunA17_Chr1g0162871 | 54.054 | 74 | 34 | 0 | 32 | 105 | 115 | 188 | 3.10e-20 | 85.9 |
| Msa0568640 | MtrunA17_Chr4g0061651 | 54.167 | 72 | 31 | 1 | 35 | 106 | 137 | 206 | 3.34e-20 | 85.5 |
| Msa0568640 | MtrunA17_Chr2g0302791 | 56.716 | 67 | 29 | 0 | 33 | 99 | 151 | 217 | 3.66e-20 | 85.9 |
| Msa0568640 | MtrunA17_Chr4g0046991 | 58.730 | 63 | 26 | 0 | 32 | 94 | 84 | 146 | 8.64e-20 | 80.1 |
| Msa0568640 | MtrunA17_Chr7g0258471 | 51.250 | 80 | 39 | 0 | 36 | 115 | 157 | 236 | 1.12e-19 | 84.0 |
| Msa0568640 | MtrunA17_Chr7g0224821 | 56.061 | 66 | 29 | 0 | 35 | 100 | 91 | 156 | 1.53e-19 | 83.2 |
| Msa0568640 | MtrunA17_Chr2g0308321 | 60.000 | 60 | 24 | 0 | 35 | 94 | 185 | 244 | 2.00e-19 | 83.6 |
| Msa0568640 | MtrunA17_Chr5g0420051 | 59.677 | 62 | 25 | 0 | 33 | 94 | 193 | 254 | 3.71e-19 | 82.4 |
| Msa0568640 | MtrunA17_Chr1g0194121 | 53.623 | 69 | 32 | 0 | 32 | 100 | 158 | 226 | 7.76e-19 | 82.0 |
| Msa0568640 | MtrunA17_Chr7g0270541 | 52.055 | 73 | 35 | 0 | 33 | 105 | 157 | 229 | 1.45e-18 | 81.3 |
| Msa0568640 | MtrunA17_Chr8g0334671 | 52.500 | 80 | 35 | 2 | 36 | 112 | 202 | 281 | 6.41e-18 | 78.2 |
| Msa0568640 | MtrunA17_Chr2g0282521 | 53.968 | 63 | 29 | 0 | 36 | 98 | 79 | 141 | 3.34e-17 | 73.2 |
| Msa0568640 | MtrunA17_Chr2g0286661 | 43.023 | 86 | 43 | 1 | 36 | 115 | 118 | 203 | 1.65e-15 | 72.4 |
| Msa0568640 | MtrunA17_Chr8g0377431 | 41.667 | 96 | 34 | 1 | 3 | 76 | 111 | 206 | 2.85e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568640 | AT5G43270.3 | 62.667 | 75 | 25 | 1 | 23 | 97 | 174 | 245 | 3.57e-25 | 99.4 |
| Msa0568640 | AT5G43270.1 | 62.667 | 75 | 25 | 1 | 23 | 97 | 174 | 245 | 3.57e-25 | 99.4 |
| Msa0568640 | AT5G43270.2 | 62.667 | 75 | 25 | 1 | 23 | 97 | 174 | 245 | 3.57e-25 | 99.4 |
| Msa0568640 | AT1G27370.6 | 46.491 | 114 | 49 | 3 | 33 | 140 | 188 | 295 | 5.95e-24 | 95.5 |
| Msa0568640 | AT1G27370.1 | 46.491 | 114 | 49 | 3 | 33 | 140 | 188 | 295 | 1.01e-23 | 95.1 |
| Msa0568640 | AT1G27370.5 | 46.491 | 114 | 49 | 3 | 33 | 140 | 188 | 295 | 1.01e-23 | 95.1 |
| Msa0568640 | AT1G27370.3 | 46.491 | 114 | 49 | 3 | 33 | 140 | 188 | 295 | 1.01e-23 | 95.1 |
| Msa0568640 | AT1G27370.2 | 46.491 | 114 | 49 | 3 | 33 | 140 | 188 | 295 | 1.01e-23 | 95.1 |
| Msa0568640 | AT1G27370.4 | 46.491 | 114 | 49 | 3 | 33 | 140 | 188 | 295 | 1.01e-23 | 95.1 |
| Msa0568640 | AT1G27370.7 | 46.491 | 114 | 49 | 3 | 33 | 140 | 188 | 295 | 1.01e-23 | 95.1 |
| Msa0568640 | AT3G60030.1 | 52.703 | 74 | 35 | 0 | 32 | 105 | 138 | 211 | 1.10e-20 | 87.4 |
| Msa0568640 | AT1G27360.2 | 63.077 | 65 | 22 | 1 | 36 | 100 | 190 | 252 | 1.79e-20 | 86.3 |
| Msa0568640 | AT1G27360.1 | 63.077 | 65 | 22 | 1 | 36 | 100 | 190 | 252 | 1.79e-20 | 86.3 |
| Msa0568640 | AT1G27360.3 | 63.077 | 65 | 22 | 1 | 36 | 100 | 190 | 252 | 1.79e-20 | 86.3 |
| Msa0568640 | AT1G27360.4 | 63.077 | 65 | 22 | 1 | 36 | 100 | 190 | 252 | 1.79e-20 | 86.3 |
| Msa0568640 | AT1G53160.3 | 54.930 | 71 | 32 | 0 | 36 | 106 | 69 | 139 | 2.52e-20 | 82.4 |
| Msa0568640 | AT1G53160.2 | 54.930 | 71 | 32 | 0 | 36 | 106 | 69 | 139 | 3.16e-20 | 82.0 |
| Msa0568640 | AT1G53160.1 | 54.930 | 71 | 32 | 0 | 36 | 106 | 69 | 139 | 3.16e-20 | 82.0 |
| Msa0568640 | AT2G47070.1 | 58.209 | 67 | 28 | 0 | 32 | 98 | 117 | 183 | 5.86e-20 | 85.5 |
| Msa0568640 | AT2G42200.1 | 60.000 | 65 | 26 | 0 | 36 | 100 | 89 | 153 | 6.17e-20 | 84.7 |
| Msa0568640 | AT1G76580.2 | 53.012 | 83 | 34 | 1 | 25 | 107 | 123 | 200 | 6.33e-20 | 85.5 |
| Msa0568640 | AT1G76580.3 | 53.012 | 83 | 34 | 1 | 25 | 107 | 123 | 200 | 6.40e-20 | 85.5 |
| Msa0568640 | AT1G76580.1 | 53.012 | 83 | 34 | 1 | 25 | 107 | 123 | 200 | 7.08e-20 | 85.1 |
| Msa0568640 | AT1G69170.1 | 61.290 | 62 | 24 | 0 | 33 | 94 | 136 | 197 | 1.79e-19 | 83.6 |
| Msa0568640 | AT3G15270.1 | 54.412 | 68 | 31 | 0 | 32 | 99 | 74 | 141 | 4.44e-19 | 79.3 |
| Msa0568640 | AT2G33810.1 | 57.143 | 63 | 27 | 0 | 32 | 94 | 65 | 127 | 6.45e-19 | 77.8 |
| Msa0568640 | AT5G50570.1 | 56.061 | 66 | 29 | 0 | 35 | 100 | 115 | 180 | 2.76e-18 | 80.1 |
| Msa0568640 | AT5G50570.2 | 56.061 | 66 | 29 | 0 | 35 | 100 | 115 | 180 | 2.76e-18 | 80.1 |
| Msa0568640 | AT5G50670.1 | 56.061 | 66 | 29 | 0 | 35 | 100 | 115 | 180 | 2.76e-18 | 80.1 |
| Msa0568640 | AT5G50670.2 | 56.061 | 66 | 29 | 0 | 35 | 100 | 115 | 180 | 2.76e-18 | 80.1 |
| Msa0568640 | AT1G20980.1 | 57.143 | 70 | 29 | 1 | 35 | 103 | 134 | 203 | 4.16e-18 | 80.1 |
| Msa0568640 | AT1G02065.1 | 56.522 | 69 | 29 | 1 | 36 | 104 | 203 | 270 | 4.13e-17 | 76.6 |
| Msa0568640 | AT3G57920.1 | 52.308 | 65 | 31 | 0 | 36 | 100 | 74 | 138 | 1.87e-15 | 72.0 |
| Msa0568640 | AT2G47070.2 | 58.491 | 53 | 22 | 0 | 46 | 98 | 2 | 54 | 2.10e-14 | 69.7 |
| Msa0568640 | AT5G18830.1 | 49.153 | 59 | 30 | 0 | 36 | 94 | 153 | 211 | 4.65e-12 | 62.8 |
| Msa0568640 | AT5G18830.3 | 49.153 | 59 | 30 | 0 | 36 | 94 | 153 | 211 | 4.75e-12 | 62.8 |
| Msa0568640 | AT5G18830.2 | 49.153 | 59 | 30 | 0 | 36 | 94 | 153 | 211 | 4.76e-12 | 62.8 |
Find 21 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTGATTGGACAGATTC+AGG | 0.307609 | 4_1:+70263378 | None:intergenic |
| CAGATTCAGGATGATATTTA+CGG | 0.380220 | 4_1:+70263391 | None:intergenic |
| ACAAAGCTGATTGACTTGAT+TGG | 0.380359 | 4_1:+70263367 | None:intergenic |
| CATCGAACTCAAACAGATCA+TGG | 0.413681 | 4_1:+70263463 | None:intergenic |
| ATCTTGTGTCATTTAAGTAT+TGG | 0.430573 | 4_1:-70263854 | Msa0568640:CDS |
| GAAAGCATAGTCACAGTACT+TGG | 0.430711 | 4_1:+70262426 | None:intergenic |
| ACACCAGCTATAACCACCTT+TGG | 0.433788 | 4_1:+70263696 | None:intergenic |
| GCAGACTTTGAATTAGCAAA+TGG | 0.463595 | 4_1:+70262497 | None:intergenic |
| TATCCAAAGGTGGTTATAGC+TGG | 0.492634 | 4_1:-70263699 | Msa0568640:CDS |
| CATAGTCACAGTACTTGGGG+GGG | 0.496845 | 4_1:+70262431 | None:intergenic |
| AAAGCATAGTCACAGTACTT+GGG | 0.528430 | 4_1:+70262427 | None:intergenic |
| GCTTTGTCTTCTTCATCCTG+TGG | 0.538137 | 4_1:-70263351 | Msa0568640:intron |
| GCTGCAGACGACAACTTTCA+CGG | 0.538596 | 4_1:-70263428 | Msa0568640:CDS |
| AAAGGTGGTTATAGCTGGTG+TGG | 0.575359 | 4_1:-70263694 | Msa0568640:CDS |
| GGAAAGAAATGTAAGTCCAA+TGG | 0.580565 | 4_1:-70263833 | Msa0568640:intron |
| AGTCTGCTACAAATTTAGCC+TGG | 0.601473 | 4_1:-70262481 | Msa0568640:CDS |
| AAGCATAGTCACAGTACTTG+GGG | 0.608411 | 4_1:+70262428 | None:intergenic |
| AAGTCATTCAAAATATCCAA+AGG | 0.642743 | 4_1:-70263712 | Msa0568640:CDS |
| GCATAGTCACAGTACTTGGG+GGG | 0.674406 | 4_1:+70262430 | None:intergenic |
| TCATTCAAAATATCCAAAGG+TGG | 0.681356 | 4_1:-70263709 | Msa0568640:CDS |
| AGCATAGTCACAGTACTTGG+GGG | 0.684604 | 4_1:+70262429 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAGTATTTTTTTTATGA+TGG | - | chr4_1:70262759-70262778 | Msa0568640:intron | 10.0% |
| !!! | TAATAGTATTTTTTTTATGA+TGG | - | chr4_1:70262759-70262778 | Msa0568640:intron | 10.0% |
| !! | TGTTTAGATATAATTGATAT+AGG | - | chr4_1:70262733-70262752 | Msa0568640:intron | 15.0% |
| !! | ATAATTTATTATTGTCAGAA+GGG | - | chr4_1:70263433-70263452 | Msa0568640:CDS | 15.0% |
| !! | AAATAATTATCATGATTGTT+TGG | - | chr4_1:70263569-70263588 | Msa0568640:intron | 15.0% |
| !! | TGTTTAGATATAATTGATAT+AGG | - | chr4_1:70262733-70262752 | Msa0568640:intron | 15.0% |
| !! | ATAATTTATTATTGTCAGAA+GGG | - | chr4_1:70263433-70263452 | Msa0568640:CDS | 15.0% |
| !! | AAATAATTATCATGATTGTT+TGG | - | chr4_1:70263569-70263588 | Msa0568640:intron | 15.0% |
| !!! | TTTTATTTCATGGATCTTAT+TGG | - | chr4_1:70263254-70263273 | Msa0568640:intron | 20.0% |
| !! | GATAATTTATTATTGTCAGA+AGG | - | chr4_1:70263432-70263451 | Msa0568640:CDS | 20.0% |
| !!! | ATCAAGTCTTTAAAGAAATA+AGG | - | chr4_1:70263518-70263537 | Msa0568640:intron | 20.0% |
| !!! | AGTTGTATTTTTACTAAATC+AGG | + | chr4_1:70263670-70263689 | None:intergenic | 20.0% |
| !!! | TTCAGTCTTCTAATATATTT+TGG | - | chr4_1:70263802-70263821 | Msa0568640:intron | 20.0% |
| !!! | TTTTATTTCATGGATCTTAT+TGG | - | chr4_1:70263254-70263273 | Msa0568640:intron | 20.0% |
| !! | GATAATTTATTATTGTCAGA+AGG | - | chr4_1:70263432-70263451 | Msa0568640:CDS | 20.0% |
| !!! | ATCAAGTCTTTAAAGAAATA+AGG | - | chr4_1:70263518-70263537 | Msa0568640:intron | 20.0% |
| !!! | AGTTGTATTTTTACTAAATC+AGG | + | chr4_1:70263670-70263689 | None:intergenic | 20.0% |
| !!! | TTCAGTCTTCTAATATATTT+TGG | - | chr4_1:70263802-70263821 | Msa0568640:intron | 20.0% |
| !!! | CAAAAACCTATCTTTTTCAA+GGG | - | chr4_1:70262473-70262492 | Msa0568640:CDS | 25.0% |
| !!! | ATCTTGTGTCATTTAAGTAT+TGG | - | chr4_1:70262496-70262515 | Msa0568640:CDS | 25.0% |
| ! | AAGTCATTCAAAATATCCAA+AGG | - | chr4_1:70262638-70262657 | Msa0568640:intron | 25.0% |
| !!! | TTCTGCTTGTTATCTATTAT+TGG | - | chr4_1:70263032-70263051 | Msa0568640:intron | 25.0% |
| ! | AATGAACATTAAATGTGATG+TGG | - | chr4_1:70263168-70263187 | Msa0568640:intron | 25.0% |
| !!! | TCGACTTTTCTTTTATTTCA+TGG | - | chr4_1:70263244-70263263 | Msa0568640:intron | 25.0% |
| !!! | ACTAAATCAGGTTTTAAAGA+TGG | + | chr4_1:70263658-70263677 | None:intergenic | 25.0% |
| ! | TATAACAAAACAACCAAAAG+TGG | + | chr4_1:70263733-70263752 | None:intergenic | 25.0% |
| !!! | GTTTTGTTATAGTTAATTGC+AGG | - | chr4_1:70263742-70263761 | Msa0568640:CDS | 25.0% |
| !!! | CAAAAACCTATCTTTTTCAA+GGG | - | chr4_1:70262473-70262492 | Msa0568640:CDS | 25.0% |
| !!! | ATCTTGTGTCATTTAAGTAT+TGG | - | chr4_1:70262496-70262515 | Msa0568640:CDS | 25.0% |
| ! | AAGTCATTCAAAATATCCAA+AGG | - | chr4_1:70262638-70262657 | Msa0568640:intron | 25.0% |
| !!! | TTCTGCTTGTTATCTATTAT+TGG | - | chr4_1:70263032-70263051 | Msa0568640:intron | 25.0% |
| ! | AATGAACATTAAATGTGATG+TGG | - | chr4_1:70263168-70263187 | Msa0568640:intron | 25.0% |
| !!! | TCGACTTTTCTTTTATTTCA+TGG | - | chr4_1:70263244-70263263 | Msa0568640:intron | 25.0% |
| !!! | ACTAAATCAGGTTTTAAAGA+TGG | + | chr4_1:70263658-70263677 | None:intergenic | 25.0% |
| ! | TATAACAAAACAACCAAAAG+TGG | + | chr4_1:70263733-70263752 | None:intergenic | 25.0% |
| !!! | GTTTTGTTATAGTTAATTGC+AGG | - | chr4_1:70263742-70263761 | Msa0568640:CDS | 25.0% |
| ! | CCTTGAAAAAGATAGGTTTT+TGG | + | chr4_1:70262475-70262494 | None:intergenic | 30.0% |
| !! | CCAAAAACCTATCTTTTTCA+AGG | - | chr4_1:70262472-70262491 | Msa0568640:CDS | 30.0% |
| TCATTCAAAATATCCAAAGG+TGG | - | chr4_1:70262641-70262660 | Msa0568640:intron | 30.0% | |
| CAGATTCAGGATGATATTTA+CGG | + | chr4_1:70262962-70262981 | None:intergenic | 30.0% | |
| AATAGATAACAAGCAGAAAC+TGG | + | chr4_1:70263030-70263049 | None:intergenic | 30.0% | |
| ! | AATGTTCATTGTAACTTGCA+TGG | + | chr4_1:70263158-70263177 | None:intergenic | 30.0% |
| TGGATACTGGATATAGTTAT+AGG | - | chr4_1:70263479-70263498 | Msa0568640:intron | 30.0% | |
| AATCTAGTTAGTAAAGACCT+TGG | + | chr4_1:70263623-70263642 | None:intergenic | 30.0% | |
| !!! | ATATATTTTGGTTCTGCAGA+TGG | - | chr4_1:70263814-70263833 | Msa0568640:intron | 30.0% |
| ! | CCTTGAAAAAGATAGGTTTT+TGG | + | chr4_1:70262475-70262494 | None:intergenic | 30.0% |
| !! | CCAAAAACCTATCTTTTTCA+AGG | - | chr4_1:70262472-70262491 | Msa0568640:CDS | 30.0% |
| TCATTCAAAATATCCAAAGG+TGG | - | chr4_1:70262641-70262660 | Msa0568640:intron | 30.0% | |
| CAGATTCAGGATGATATTTA+CGG | + | chr4_1:70262962-70262981 | None:intergenic | 30.0% | |
| AATAGATAACAAGCAGAAAC+TGG | + | chr4_1:70263030-70263049 | None:intergenic | 30.0% | |
| ! | AATGTTCATTGTAACTTGCA+TGG | + | chr4_1:70263158-70263177 | None:intergenic | 30.0% |
| TGGATACTGGATATAGTTAT+AGG | - | chr4_1:70263479-70263498 | Msa0568640:intron | 30.0% | |
| AATCTAGTTAGTAAAGACCT+TGG | + | chr4_1:70263623-70263642 | None:intergenic | 30.0% | |
| !!! | ATATATTTTGGTTCTGCAGA+TGG | - | chr4_1:70263814-70263833 | Msa0568640:intron | 30.0% |
| CAAGATCCCTTGAAAAAGAT+AGG | + | chr4_1:70262482-70262501 | None:intergenic | 35.0% | |
| GGAAAGAAATGTAAGTCCAA+TGG | - | chr4_1:70262517-70262536 | Msa0568640:CDS | 35.0% | |
| GATAATCTTTGGCCAATGAA+AGG | + | chr4_1:70262596-70262615 | None:intergenic | 35.0% | |
| ACGTATGCGATGATAATCTT+TGG | + | chr4_1:70262607-70262626 | None:intergenic | 35.0% | |
| ! | GATTTTGCCAAAAATGTAGC+AGG | - | chr4_1:70262685-70262704 | Msa0568640:intron | 35.0% |
| ! | AGCTTTACCTGCTACATTTT+TGG | + | chr4_1:70262695-70262714 | None:intergenic | 35.0% |
| !!! | AACAAACTTGCTGTCTTTTC+TGG | - | chr4_1:70262828-70262847 | Msa0568640:intron | 35.0% |
| !! | ACAAAGCTGATTGACTTGAT+TGG | + | chr4_1:70262986-70263005 | None:intergenic | 35.0% |
| TAATACTAGTAAGCGTGATG+TGG | - | chr4_1:70263088-70263107 | Msa0568640:intron | 35.0% | |
| ATACAAGGGGTTCAAAAGAT+AGG | + | chr4_1:70263217-70263236 | None:intergenic | 35.0% | |
| AACATGTCTATTACTGTGCA+TGG | + | chr4_1:70263383-70263402 | None:intergenic | 35.0% | |
| ! | GATGTTGCTATTAGAGTTGT+GGG | - | chr4_1:70263455-70263474 | Msa0568640:CDS | 35.0% |
| ATTATGATGTTCCTAAGCCA+AGG | - | chr4_1:70263603-70263622 | Msa0568640:intron | 35.0% | |
| GTCAAAACTTAGACCAAAGA+AGG | - | chr4_1:70263706-70263725 | Msa0568640:CDS | 35.0% | |
| GCAGACTTTGAATTAGCAAA+TGG | + | chr4_1:70263856-70263875 | None:intergenic | 35.0% | |
| CAAGATCCCTTGAAAAAGAT+AGG | + | chr4_1:70262482-70262501 | None:intergenic | 35.0% | |
| GGAAAGAAATGTAAGTCCAA+TGG | - | chr4_1:70262517-70262536 | Msa0568640:CDS | 35.0% | |
| GATAATCTTTGGCCAATGAA+AGG | + | chr4_1:70262596-70262615 | None:intergenic | 35.0% | |
| ACGTATGCGATGATAATCTT+TGG | + | chr4_1:70262607-70262626 | None:intergenic | 35.0% | |
| ! | GATTTTGCCAAAAATGTAGC+AGG | - | chr4_1:70262685-70262704 | Msa0568640:intron | 35.0% |
| ! | AGCTTTACCTGCTACATTTT+TGG | + | chr4_1:70262695-70262714 | None:intergenic | 35.0% |
| !!! | AACAAACTTGCTGTCTTTTC+TGG | - | chr4_1:70262828-70262847 | Msa0568640:intron | 35.0% |
| !! | ACAAAGCTGATTGACTTGAT+TGG | + | chr4_1:70262986-70263005 | None:intergenic | 35.0% |
| TAATACTAGTAAGCGTGATG+TGG | - | chr4_1:70263088-70263107 | Msa0568640:intron | 35.0% | |
| ATACAAGGGGTTCAAAAGAT+AGG | + | chr4_1:70263217-70263236 | None:intergenic | 35.0% | |
| AACATGTCTATTACTGTGCA+TGG | + | chr4_1:70263383-70263402 | None:intergenic | 35.0% | |
| ! | GATGTTGCTATTAGAGTTGT+GGG | - | chr4_1:70263455-70263474 | Msa0568640:CDS | 35.0% |
| ATTATGATGTTCCTAAGCCA+AGG | - | chr4_1:70263603-70263622 | Msa0568640:intron | 35.0% | |
| GTCAAAACTTAGACCAAAGA+AGG | - | chr4_1:70263706-70263725 | Msa0568640:CDS | 35.0% | |
| GCAGACTTTGAATTAGCAAA+TGG | + | chr4_1:70263856-70263875 | None:intergenic | 35.0% | |
| ACGTCATATGTTCTGACCAT+TGG | + | chr4_1:70262536-70262555 | None:intergenic | 40.0% | |
| AGGTCACACAACTTTCAAAC+AGG | + | chr4_1:70262570-70262589 | None:intergenic | 40.0% | |
| TATCCAAAGGTGGTTATAGC+TGG | - | chr4_1:70262651-70262670 | Msa0568640:intron | 40.0% | |
| !!! | AACTTGCTGTCTTTTCTGGA+TGG | - | chr4_1:70262832-70262851 | Msa0568640:intron | 40.0% |
| CATCGAACTCAAACAGATCA+TGG | + | chr4_1:70262890-70262909 | None:intergenic | 40.0% | |
| TGACTTGATTGGACAGATTC+AGG | + | chr4_1:70262975-70262994 | None:intergenic | 40.0% | |
| AAGTCGAGCAGAACATACAA+GGG | + | chr4_1:70263231-70263250 | None:intergenic | 40.0% | |
| AAAGTCGAGCAGAACATACA+AGG | + | chr4_1:70263232-70263251 | None:intergenic | 40.0% | |
| TTAACTGTCACACGTTTCGA+TGG | - | chr4_1:70263281-70263300 | Msa0568640:intron | 40.0% | |
| ! | GGATGTTGCTATTAGAGTTG+TGG | - | chr4_1:70263454-70263473 | Msa0568640:CDS | 40.0% |
| ! | TTGCTATTAGAGTTGTGGGA+TGG | - | chr4_1:70263459-70263478 | Msa0568640:CDS | 40.0% |
| TTTGTATCGTGCCGTAATCA+GGG | + | chr4_1:70263552-70263571 | None:intergenic | 40.0% | |
| ATTTGTATCGTGCCGTAATC+AGG | + | chr4_1:70263553-70263572 | None:intergenic | 40.0% | |
| GTTAGTAAAGACCTTGGCTT+AGG | + | chr4_1:70263617-70263636 | None:intergenic | 40.0% | |
| AACCAAAAGTGGACCTTCTT+TGG | + | chr4_1:70263722-70263741 | None:intergenic | 40.0% | |
| AGTCTGCTACAAATTTAGCC+TGG | - | chr4_1:70263869-70263888 | Msa0568640:CDS | 40.0% | |
| ACGTCATATGTTCTGACCAT+TGG | + | chr4_1:70262536-70262555 | None:intergenic | 40.0% | |
| AGGTCACACAACTTTCAAAC+AGG | + | chr4_1:70262570-70262589 | None:intergenic | 40.0% | |
| TATCCAAAGGTGGTTATAGC+TGG | - | chr4_1:70262651-70262670 | Msa0568640:intron | 40.0% | |
| !!! | AACTTGCTGTCTTTTCTGGA+TGG | - | chr4_1:70262832-70262851 | Msa0568640:intron | 40.0% |
| CATCGAACTCAAACAGATCA+TGG | + | chr4_1:70262890-70262909 | None:intergenic | 40.0% | |
| TGACTTGATTGGACAGATTC+AGG | + | chr4_1:70262975-70262994 | None:intergenic | 40.0% | |
| AAGTCGAGCAGAACATACAA+GGG | + | chr4_1:70263231-70263250 | None:intergenic | 40.0% | |
| AAAGTCGAGCAGAACATACA+AGG | + | chr4_1:70263232-70263251 | None:intergenic | 40.0% | |
| TTAACTGTCACACGTTTCGA+TGG | - | chr4_1:70263281-70263300 | Msa0568640:intron | 40.0% | |
| ! | GGATGTTGCTATTAGAGTTG+TGG | - | chr4_1:70263454-70263473 | Msa0568640:CDS | 40.0% |
| ! | TTGCTATTAGAGTTGTGGGA+TGG | - | chr4_1:70263459-70263478 | Msa0568640:CDS | 40.0% |
| TTTGTATCGTGCCGTAATCA+GGG | + | chr4_1:70263552-70263571 | None:intergenic | 40.0% | |
| ATTTGTATCGTGCCGTAATC+AGG | + | chr4_1:70263553-70263572 | None:intergenic | 40.0% | |
| GTTAGTAAAGACCTTGGCTT+AGG | + | chr4_1:70263617-70263636 | None:intergenic | 40.0% | |
| AACCAAAAGTGGACCTTCTT+TGG | + | chr4_1:70263722-70263741 | None:intergenic | 40.0% | |
| AGTCTGCTACAAATTTAGCC+TGG | - | chr4_1:70263869-70263888 | Msa0568640:CDS | 40.0% | |
| CTTTCAAACAGGCAGCATGA+CGG | + | chr4_1:70262559-70262578 | None:intergenic | 45.0% | |
| GTGTGACCTTGACCTTTCAT+TGG | - | chr4_1:70262581-70262600 | Msa0568640:intron | 45.0% | |
| CTTTGGCCAATGAAAGGTCA+AGG | + | chr4_1:70262590-70262609 | None:intergenic | 45.0% | |
| ACACCAGCTATAACCACCTT+TGG | + | chr4_1:70262657-70262676 | None:intergenic | 45.0% | |
| AAAGGTGGTTATAGCTGGTG+TGG | - | chr4_1:70262656-70262675 | Msa0568640:intron | 45.0% | |
| GCTTTGTCTTCTTCATCCTG+TGG | - | chr4_1:70262999-70263018 | Msa0568640:intron | 45.0% | |
| GCAGAAACTGGTATTACCAC+AGG | + | chr4_1:70263018-70263037 | None:intergenic | 45.0% | |
| AGTCGAGCAGAACATACAAG+GGG | + | chr4_1:70263230-70263249 | None:intergenic | 45.0% | |
| CACACGTTTCGATGGTAAAG+AGG | - | chr4_1:70263289-70263308 | Msa0568640:intron | 45.0% | |
| TAGAGTTGTGGGATGGATAC+TGG | - | chr4_1:70263466-70263485 | Msa0568640:CDS | 45.0% | |
| AGGTAGCATACCCCTGATTA+CGG | - | chr4_1:70263538-70263557 | Msa0568640:intron | 45.0% | |
| TTGTATCGTGCCGTAATCAG+GGG | + | chr4_1:70263551-70263570 | None:intergenic | 45.0% | |
| ! | GACCAAAGAAGGTCCACTTT+TGG | - | chr4_1:70263717-70263736 | Msa0568640:CDS | 45.0% |
| CTTTCAAACAGGCAGCATGA+CGG | + | chr4_1:70262559-70262578 | None:intergenic | 45.0% | |
| GTGTGACCTTGACCTTTCAT+TGG | - | chr4_1:70262581-70262600 | Msa0568640:intron | 45.0% | |
| CTTTGGCCAATGAAAGGTCA+AGG | + | chr4_1:70262590-70262609 | None:intergenic | 45.0% | |
| ACACCAGCTATAACCACCTT+TGG | + | chr4_1:70262657-70262676 | None:intergenic | 45.0% | |
| AAAGGTGGTTATAGCTGGTG+TGG | - | chr4_1:70262656-70262675 | Msa0568640:intron | 45.0% | |
| GCTTTGTCTTCTTCATCCTG+TGG | - | chr4_1:70262999-70263018 | Msa0568640:intron | 45.0% | |
| GCAGAAACTGGTATTACCAC+AGG | + | chr4_1:70263018-70263037 | None:intergenic | 45.0% | |
| AGTCGAGCAGAACATACAAG+GGG | + | chr4_1:70263230-70263249 | None:intergenic | 45.0% | |
| CACACGTTTCGATGGTAAAG+AGG | - | chr4_1:70263289-70263308 | Msa0568640:intron | 45.0% | |
| TAGAGTTGTGGGATGGATAC+TGG | - | chr4_1:70263466-70263485 | Msa0568640:CDS | 45.0% | |
| AGGTAGCATACCCCTGATTA+CGG | - | chr4_1:70263538-70263557 | Msa0568640:intron | 45.0% | |
| TTGTATCGTGCCGTAATCAG+GGG | + | chr4_1:70263551-70263570 | None:intergenic | 45.0% | |
| ! | GACCAAAGAAGGTCCACTTT+TGG | - | chr4_1:70263717-70263736 | Msa0568640:CDS | 45.0% |
| GCTGCAGACGACAACTTTCA+CGG | - | chr4_1:70262922-70262941 | Msa0568640:intron | 50.0% | |
| GCTGCAGACGACAACTTTCA+CGG | - | chr4_1:70262922-70262941 | Msa0568640:intron | 50.0% | |
| ! | GCTGTGGTGCATGTTTTGCC+AGG | + | chr4_1:70263890-70263909 | None:intergenic | 55.0% |
| ! | GCTGTGGTGCATGTTTTGCC+AGG | + | chr4_1:70263890-70263909 | None:intergenic | 55.0% |
| TCACAGTACTTGGGGGGGGG+GGG | + | chr4_1:70263917-70263936 | None:intergenic | 65.0% | |
| TCACAGTACTTGGGGGGGGG+GGG | + | chr4_1:70263917-70263936 | None:intergenic | 65.0% | |
| CACAGTACTTGGGGGGGGGG+GGG | + | chr4_1:70263916-70263935 | None:intergenic | 70.0% | |
| CACAGTACTTGGGGGGGGGG+GGG | + | chr4_1:70263916-70263935 | None:intergenic | 70.0% | |
| !!! | GGGGGGGGGGGGGCTTGCTG+TGG | + | chr4_1:70263906-70263925 | None:intergenic | 85.0% |
| !!! | GGGGGGGGGGGGGCTTGCTG+TGG | + | chr4_1:70263906-70263925 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 70262436 | 70263936 | 70262436 | ID=Msa0568640;Name=Msa0568640 |
| chr4_1 | mRNA | 70262436 | 70263936 | 70262436 | ID=Msa0568640-mRNA-1;Parent=Msa0568640;Name=Msa0568640-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|0|0|4|0|146 |
| chr4_1 | exon | 70263834 | 70263936 | 70263834 | ID=Msa0568640-mRNA-1:exon:23677;Parent=Msa0568640-mRNA-1 |
| chr4_1 | exon | 70263666 | 70263762 | 70263666 | ID=Msa0568640-mRNA-1:exon:23676;Parent=Msa0568640-mRNA-1 |
| chr4_1 | exon | 70263352 | 70263488 | 70263352 | ID=Msa0568640-mRNA-1:exon:23675;Parent=Msa0568640-mRNA-1 |
| chr4_1 | exon | 70262436 | 70262539 | 70262436 | ID=Msa0568640-mRNA-1:exon:23674;Parent=Msa0568640-mRNA-1 |
| chr4_1 | CDS | 70263834 | 70263936 | 70263834 | ID=Msa0568640-mRNA-1:cds;Parent=Msa0568640-mRNA-1 |
| chr4_1 | CDS | 70263666 | 70263762 | 70263666 | ID=Msa0568640-mRNA-1:cds;Parent=Msa0568640-mRNA-1 |
| chr4_1 | CDS | 70263352 | 70263488 | 70263352 | ID=Msa0568640-mRNA-1:cds;Parent=Msa0568640-mRNA-1 |
| chr4_1 | CDS | 70262436 | 70262539 | 70262436 | ID=Msa0568640-mRNA-1:cds;Parent=Msa0568640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
