Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568880 | XP_024629648.1 | 86.692 | 263 | 25 | 2 | 1 | 263 | 1 | 253 | 1.20e-157 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568880 | sp|C0HIA3|SMH6_MAIZE | 48.444 | 225 | 103 | 4 | 1 | 224 | 1 | 213 | 2.82e-63 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568880 | G7LCB1 | 86.692 | 263 | 25 | 2 | 1 | 263 | 1 | 253 | 1.15e-155 | 452 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0568880 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568880 | MtrunA17_Chr2g0293381 | 61.240 | 258 | 81 | 3 | 1 | 258 | 1 | 239 | 4.21e-101 | 298 |
| Msa0568880 | MtrunA17_Chr8g0384671 | 60.385 | 260 | 78 | 5 | 1 | 258 | 1 | 237 | 1.44e-99 | 295 |
| Msa0568880 | MtrunA17_Chr8g0383821 | 96.262 | 107 | 4 | 0 | 1 | 107 | 1 | 107 | 7.41e-72 | 218 |
| Msa0568880 | MtrunA17_Chr4g0054131 | 40.304 | 263 | 140 | 8 | 1 | 258 | 1 | 251 | 5.50e-51 | 171 |
| Msa0568880 | MtrunA17_Chr5g0401061 | 39.431 | 246 | 126 | 4 | 1 | 241 | 1 | 228 | 1.34e-47 | 162 |
| Msa0568880 | MtrunA17_Chr8g0383841 | 89.706 | 68 | 7 | 0 | 196 | 263 | 1 | 68 | 1.23e-34 | 122 |
| Msa0568880 | MtrunA17_Chr1g0195251 | 51.969 | 127 | 49 | 3 | 135 | 261 | 295 | 409 | 3.36e-31 | 121 |
| Msa0568880 | MtrunA17_Chr2g0329921 | 32.227 | 211 | 124 | 4 | 1 | 197 | 1 | 206 | 2.27e-27 | 108 |
| Msa0568880 | MtrunA17_Chr8g0342871 | 31.922 | 307 | 173 | 8 | 1 | 306 | 1 | 272 | 1.30e-26 | 106 |
| Msa0568880 | MtrunA17_Chr1g0166681 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 6.59e-25 | 99.4 |
| Msa0568880 | MtrunA17_Chr1g0195261 | 74.000 | 50 | 13 | 0 | 1 | 50 | 1 | 50 | 1.33e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568880 | AT1G49950.3 | 46.479 | 284 | 118 | 9 | 1 | 277 | 1 | 257 | 2.83e-60 | 194 |
| Msa0568880 | AT1G49950.1 | 46.479 | 284 | 118 | 9 | 1 | 277 | 1 | 257 | 2.83e-60 | 194 |
| Msa0568880 | AT1G49950.2 | 46.479 | 284 | 118 | 9 | 1 | 277 | 1 | 257 | 2.83e-60 | 194 |
| Msa0568880 | AT5G67580.2 | 40.323 | 310 | 165 | 6 | 1 | 309 | 1 | 291 | 1.06e-41 | 146 |
| Msa0568880 | AT5G67580.1 | 40.323 | 310 | 165 | 6 | 1 | 309 | 1 | 291 | 1.06e-41 | 146 |
| Msa0568880 | AT3G49850.1 | 38.710 | 310 | 166 | 6 | 1 | 309 | 1 | 287 | 7.51e-34 | 125 |
| Msa0568880 | AT3G49850.2 | 38.710 | 310 | 166 | 6 | 1 | 309 | 1 | 287 | 7.51e-34 | 125 |
| Msa0568880 | AT1G72740.2 | 34.123 | 211 | 126 | 4 | 1 | 211 | 1 | 198 | 8.94e-28 | 109 |
| Msa0568880 | AT1G72740.1 | 35.602 | 191 | 111 | 3 | 1 | 191 | 1 | 179 | 2.47e-26 | 105 |
| Msa0568880 | AT1G17520.1 | 35.751 | 193 | 119 | 2 | 1 | 193 | 1 | 188 | 2.85e-23 | 97.8 |
| Msa0568880 | AT1G17520.4 | 34.872 | 195 | 122 | 2 | 1 | 195 | 1 | 190 | 1.11e-22 | 95.9 |
| Msa0568880 | AT1G17520.2 | 36.082 | 194 | 118 | 3 | 1 | 193 | 1 | 189 | 2.72e-22 | 95.1 |
| Msa0568880 | AT1G17520.3 | 35.204 | 196 | 121 | 3 | 1 | 195 | 1 | 191 | 9.46e-22 | 93.2 |
Find 76 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTATTGCTTCTTTCATTA+AGG | 0.194532 | 4_1:+70506649 | Msa0568880:CDS |
| AAACCGACCCATGTTATTAT+TGG | 0.212298 | 4_1:+70509103 | Msa0568880:CDS |
| ACTCTCAGCTAGCAATAAAA+AGG | 0.232134 | 4_1:+70505573 | Msa0568880:CDS |
| TAGATATTGCTTCCACTATA+AGG | 0.286103 | 4_1:-70506595 | None:intergenic |
| TGTGGGCTGGATAGGATAAA+TGG | 0.333746 | 4_1:+70505507 | Msa0568880:intron |
| TGAAGCATGGCGTAGGTAAA+TGG | 0.346059 | 4_1:+70505307 | Msa0568880:CDS |
| TTCCTCTATCTGAATATGCT+TGG | 0.349369 | 4_1:-70509079 | None:intergenic |
| AAATAAGCTGTCAGCAAAAC+TGG | 0.353881 | 4_1:+70508091 | Msa0568880:CDS |
| TCCTCTATCTGAATATGCTT+GGG | 0.366075 | 4_1:-70509078 | None:intergenic |
| GGCTGAGATAGACTTGGAAT+TGG | 0.370284 | 4_1:+70509211 | Msa0568880:CDS |
| CCAATTGGTTCAATTCATAA+TGG | 0.373637 | 4_1:+70504397 | Msa0568880:five_prime_UTR |
| CATGTTTACATTATACAGAT+TGG | 0.377520 | 4_1:+70506568 | Msa0568880:CDS |
| AAGAATGATTTCTCTCCAAT+TGG | 0.402800 | 4_1:+70504382 | Msa0568880:five_prime_UTR |
| CTATTAAATCTGACAGGGGT+GGG | 0.403434 | 4_1:+70509144 | Msa0568880:CDS |
| CCATTATGAATTGAACCAAT+TGG | 0.422844 | 4_1:-70504397 | None:intergenic |
| GAGGAAGCGGCTCTCAAAGC+TGG | 0.427705 | 4_1:+70505279 | Msa0568880:CDS |
| ACGGAGTCGTCACGCTGTTC+TGG | 0.440395 | 4_1:-70505611 | None:intergenic |
| TATTAAATCTGACAGGGGTG+GGG | 0.448513 | 4_1:+70509145 | Msa0568880:CDS |
| AATCTGCCGGTGCGCAGTAT+TGG | 0.455578 | 4_1:-70508064 | None:intergenic |
| ATTAAATCTGACAGGGGTGG+GGG | 0.463232 | 4_1:+70509146 | Msa0568880:CDS |
| AAGCCTCTATTAAATCTGAC+AGG | 0.463302 | 4_1:+70509138 | Msa0568880:CDS |
| AATATGAGTCTGAAGGCAAA+TGG | 0.474909 | 4_1:+70505533 | Msa0568880:CDS |
| ACCCAAGCATATTCAGATAG+AGG | 0.477513 | 4_1:+70509077 | Msa0568880:CDS |
| ATAATGGTGGCCAGCCAGCC+AGG | 0.479473 | 4_1:+70504413 | Msa0568880:five_prime_UTR |
| AGGCAAATGGATCATCCTCC+GGG | 0.485206 | 4_1:+70505546 | Msa0568880:CDS |
| CGCCATGGCAGAAGCTGAAG+AGG | 0.487462 | 4_1:+70509304 | Msa0568880:CDS |
| ACCCCTGTCAGATTTAATAG+AGG | 0.496957 | 4_1:-70509141 | None:intergenic |
| CCTCCCTTCCAATAATAACA+TGG | 0.497696 | 4_1:-70509111 | None:intergenic |
| TGCCTCTTCAGCTTCTGCCA+TGG | 0.502504 | 4_1:-70509306 | None:intergenic |
| AAGGCAAATGGATCATCCTC+CGG | 0.503120 | 4_1:+70505545 | Msa0568880:CDS |
| CAGATTGGACAACCTTATAG+TGG | 0.503998 | 4_1:+70506583 | Msa0568880:CDS |
| AAAATTCATACCTGGCTGGC+TGG | 0.506502 | 4_1:-70504423 | None:intergenic |
| CTGGTGGATCTTGTATCTAG+TGG | 0.509226 | 4_1:+70508110 | Msa0568880:CDS |
| TTATATTTCAGGTGAAACAT+AGG | 0.516350 | 4_1:+70509039 | Msa0568880:intron |
| CGACCCATGTTATTATTGGA+AGG | 0.524027 | 4_1:+70509107 | Msa0568880:CDS |
| ATCTAGTGGAAAACTGATCA+AGG | 0.537966 | 4_1:+70508124 | Msa0568880:CDS |
| AAAGTCCATGTCTTTACAAG+AGG | 0.539777 | 4_1:+70509241 | Msa0568880:CDS |
| TGCTGAAGCAGAAGCCGCCA+TGG | 0.540719 | 4_1:+70509289 | Msa0568880:CDS |
| AGAGGCAACAAAGGAGGCAG+AGG | 0.547850 | 4_1:+70509322 | Msa0568880:CDS |
| AGAAGCTGAAGAGGCAACAA+AGG | 0.557008 | 4_1:+70509313 | Msa0568880:CDS |
| CCGCTCAAATATCGATCTCA+AGG | 0.560055 | 4_1:+70505374 | Msa0568880:CDS |
| CAATCTGTATAATGTAAACA+TGG | 0.561052 | 4_1:-70506567 | None:intergenic |
| AAGAAAGGCTGAGATAGACT+TGG | 0.566957 | 4_1:+70509205 | Msa0568880:CDS |
| CTCTTCAGCTTCTGCCATGG+CGG | 0.568303 | 4_1:-70509303 | None:intergenic |
| ATGGTCATCAGAAGAGGAAG+CGG | 0.577986 | 4_1:+70505266 | Msa0568880:CDS |
| ACAGAAATGGTCATCAGAAG+AGG | 0.578108 | 4_1:+70505260 | Msa0568880:CDS |
| ATTGGTTCAATTCATAATGG+TGG | 0.580210 | 4_1:+70504400 | Msa0568880:five_prime_UTR |
| AGCAATATCTAGCTTGAATG+AGG | 0.580943 | 4_1:+70506607 | Msa0568880:CDS |
| GACCCATGTTATTATTGGAA+GGG | 0.581327 | 4_1:+70509108 | Msa0568880:CDS |
| AAGCATACACTGTCAAAATG+AGG | 0.582724 | 4_1:-70506542 | None:intergenic |
| CTATCTGAATATGCTTGGGT+AGG | 0.584721 | 4_1:-70509074 | None:intergenic |
| AGAAGCAGAAGCTGATGCAG+CGG | 0.591865 | 4_1:+70509349 | Msa0568880:CDS |
| ATGGAGAAATATGAGTCTGA+AGG | 0.599241 | 4_1:+70505526 | Msa0568880:CDS |
| TGGGTGCTACTAGACAGAAA+TGG | 0.601772 | 4_1:+70505247 | Msa0568880:CDS |
| AGCCTCTATTAAATCTGACA+GGG | 0.601960 | 4_1:+70509139 | Msa0568880:CDS |
| CTTCCAATAATAACATGGGT+CGG | 0.603083 | 4_1:-70509106 | None:intergenic |
| CCATGTTATTATTGGAAGGG+AGG | 0.603196 | 4_1:+70509111 | Msa0568880:CDS |
| GGAGTTGTGAAGCATGGCGT+AGG | 0.603718 | 4_1:+70505300 | Msa0568880:CDS |
| TGCTAGCTGAGAGTTGTCCC+CGG | 0.606787 | 4_1:-70505564 | None:intergenic |
| CTCCCTTCCAATAATAACAT+GGG | 0.607660 | 4_1:-70509110 | None:intergenic |
| TCTATTAAATCTGACAGGGG+TGG | 0.615717 | 4_1:+70509143 | Msa0568880:CDS |
| AAAGCTGGAGTTGTGAAGCA+TGG | 0.620365 | 4_1:+70505294 | Msa0568880:CDS |
| AGCTGAAGAGGCAACAAAGG+AGG | 0.624067 | 4_1:+70509316 | Msa0568880:CDS |
| TAAGCTGTCAGCAAAACTGG+TGG | 0.625095 | 4_1:+70508094 | Msa0568880:CDS |
| TACAACACATGGTTAAACTC+AGG | 0.630999 | 4_1:-70505348 | None:intergenic |
| CCTTGAGATCGATATTTGAG+CGG | 0.641849 | 4_1:-70505374 | None:intergenic |
| TCTAGCTTGAATGAGGTCGA+TGG | 0.649394 | 4_1:+70506614 | Msa0568880:CDS |
| GTAGAACCAATACTGCGCAC+CGG | 0.653755 | 4_1:+70508058 | Msa0568880:intron |
| GATTACCTCTTGTAAAGACA+TGG | 0.659824 | 4_1:-70509246 | None:intergenic |
| GCCTCTATTAAATCTGACAG+GGG | 0.668262 | 4_1:+70509140 | Msa0568880:CDS |
| TAAATGGAGTAAGATACTCA+AGG | 0.669197 | 4_1:+70505323 | Msa0568880:CDS |
| TTGAGCGGATATACAACACA+TGG | 0.677687 | 4_1:-70505359 | None:intergenic |
| AGTAACAAGATTTACAGCCA+CGG | 0.683382 | 4_1:-70505630 | None:intergenic |
| AGAACAGCGTGACGACTCCG+TGG | 0.703510 | 4_1:+70505613 | Msa0568880:CDS |
| TAGCTGAGAGTTGTCCCCGG+AGG | 0.710409 | 4_1:-70505561 | None:intergenic |
| GGCAAATGGATCATCCTCCG+GGG | 0.731603 | 4_1:+70505547 | Msa0568880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATTTATAGCATTA+GGG | + | chr4_1:70504569-70504588 | Msa0568880:intron | 10.0% |
| !! | AATACATTATTATATGTAAA+GGG | - | chr4_1:70505443-70505462 | None:intergenic | 10.0% |
| !!! | TGCTTTTAAATTATTAAATT+CGG | + | chr4_1:70506709-70506728 | Msa0568880:intron | 10.0% |
| !! | AAAAAAAAGAAAAAAAAAAG+TGG | - | chr4_1:70508695-70508714 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGTTTCCTTTT+TGG | - | chr4_1:70504544-70504563 | None:intergenic | 15.0% |
| !!! | CTAATTTTATTTATAGCATT+AGG | + | chr4_1:70504568-70504587 | Msa0568880:intron | 15.0% |
| !! | ATTTGTATAATTTATGATGT+TGG | + | chr4_1:70505189-70505208 | Msa0568880:intron | 15.0% |
| !! | CAATACATTATTATATGTAA+AGG | - | chr4_1:70505444-70505463 | None:intergenic | 15.0% |
| !! | ATAATGTATTGAATAAATGT+TGG | + | chr4_1:70505453-70505472 | Msa0568880:intron | 15.0% |
| !! | TAAACAAAACAAAAAATATG+GGG | - | chr4_1:70505750-70505769 | None:intergenic | 15.0% |
| !! | CTAAACAAAACAAAAAATAT+GGG | - | chr4_1:70505751-70505770 | None:intergenic | 15.0% |
| !! | ACTAAACAAAACAAAAAATA+TGG | - | chr4_1:70505752-70505771 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTTGTTTAGTA+TGG | + | chr4_1:70505753-70505772 | Msa0568880:intron | 15.0% |
| !! | TAGTATGGTAATTTATTTAA+TGG | + | chr4_1:70505768-70505787 | Msa0568880:intron | 15.0% |
| !! | TCAAAATGAAAAATTTATCT+TGG | + | chr4_1:70505830-70505849 | Msa0568880:intron | 15.0% |
| !! | TATAAGATGCAATTAAATAA+GGG | - | chr4_1:70505951-70505970 | None:intergenic | 15.0% |
| !! | AAATTAAACAAATAACATCA+TGG | - | chr4_1:70506854-70506873 | None:intergenic | 15.0% |
| !!! | ATTTTGATTAGTACAAAAAT+TGG | + | chr4_1:70506870-70506889 | Msa0568880:intron | 15.0% |
| !! | TTCTTCATTTATATATATCA+AGG | + | chr4_1:70507230-70507249 | Msa0568880:intron | 15.0% |
| !!! | GTTTTTGTTCTTTATATTTT+AGG | + | chr4_1:70508907-70508926 | Msa0568880:intron | 15.0% |
| !!! | AAGTTTATTTTATAAGCGTT+TGG | - | chr4_1:70504473-70504492 | None:intergenic | 20.0% |
| !!! | AATAGCATTGATTAAATAGA+GGG | + | chr4_1:70504518-70504537 | Msa0568880:intron | 20.0% |
| !! | ACTTGTTTAGGTAAAAAATA+AGG | + | chr4_1:70504907-70504926 | Msa0568880:intron | 20.0% |
| !!! | AACATATAATCACAAGTTTT+AGG | - | chr4_1:70505153-70505172 | None:intergenic | 20.0% |
| !! | AAAACTTGTGATTATATGTT+TGG | + | chr4_1:70505153-70505172 | Msa0568880:intron | 20.0% |
| !! | CTATAAGATGCAATTAAATA+AGG | - | chr4_1:70505952-70505971 | None:intergenic | 20.0% |
| !! | ATATAATTTAATTGTGCTAC+CGG | + | chr4_1:70506369-70506388 | Msa0568880:intron | 20.0% |
| !! | AAGGTATAATTATGATTTCT+AGG | + | chr4_1:70506668-70506687 | Msa0568880:intron | 20.0% |
| !! | AGATATTAGAAGTTCTATTT+AGG | - | chr4_1:70508651-70508670 | None:intergenic | 20.0% |
| !! | AAATAGAACTTCTAATATCT+AGG | + | chr4_1:70508651-70508670 | Msa0568880:intron | 20.0% |
| !!! | TACATTTTCTAATGTTTACA+TGG | + | chr4_1:70508849-70508868 | Msa0568880:intron | 20.0% |
| !!! | AATCTATGTCATACTTTTTA+GGG | - | chr4_1:70509178-70509197 | None:intergenic | 20.0% |
| !!! | TAATCTATGTCATACTTTTT+AGG | - | chr4_1:70509179-70509198 | None:intergenic | 20.0% |
| !! | CATAGATTATCAAAAAAGAA+AGG | + | chr4_1:70509190-70509209 | Msa0568880:CDS | 20.0% |
| !! | TTTTCATCACAATTACTTTC+TGG | + | chr4_1:70504443-70504462 | Msa0568880:intron | 25.0% |
| ! | TTTCATCACAATTACTTTCT+GGG | + | chr4_1:70504444-70504463 | Msa0568880:intron | 25.0% |
| ! | TAAACTTGAATTTCCAAACT+TGG | + | chr4_1:70504486-70504505 | Msa0568880:intron | 25.0% |
| !!! | CAATAGCATTGATTAAATAG+AGG | + | chr4_1:70504517-70504536 | Msa0568880:intron | 25.0% |
| ! | AAAAATAAGGAAAAGAGATG+AGG | + | chr4_1:70504920-70504939 | Msa0568880:intron | 25.0% |
| ! | AAAATAAGGAAAAGAGATGA+GGG | + | chr4_1:70504921-70504940 | Msa0568880:intron | 25.0% |
| ! | TGAGAAAGAGTAGAATTATT+TGG | + | chr4_1:70504989-70505008 | Msa0568880:intron | 25.0% |
| ! | AAACTAAAACTTTCCTACAT+GGG | - | chr4_1:70505066-70505085 | None:intergenic | 25.0% |
| !! | TGTAGAAGAGATTGAATTTT+TGG | + | chr4_1:70505213-70505232 | Msa0568880:intron | 25.0% |
| !! | GTAGAAGAGATTGAATTTTT+GGG | + | chr4_1:70505214-70505233 | Msa0568880:intron | 25.0% |
| !!! | ATATCTGTTTTAACTTGAAG+AGG | - | chr4_1:70505686-70505705 | None:intergenic | 25.0% |
| ! | ACTTCTTAACAAATGTCTTT+GGG | - | chr4_1:70505810-70505829 | None:intergenic | 25.0% |
| ! | AACTTCTTAACAAATGTCTT+TGG | - | chr4_1:70505811-70505830 | None:intergenic | 25.0% |
| ! | ATAAACCAATAGGGATATTA+CGG | - | chr4_1:70506035-70506054 | None:intergenic | 25.0% |
| !!! | AATATCCCTATTGGTTTATT+TGG | + | chr4_1:70506036-70506055 | Msa0568880:intron | 25.0% |
| ! | CAAAACAAGAGAATGAAATT+AGG | - | chr4_1:70506472-70506491 | None:intergenic | 25.0% |
| ! | CAATCTGTATAATGTAAACA+TGG | - | chr4_1:70506570-70506589 | None:intergenic | 25.0% |
| ! | CATGTTTACATTATACAGAT+TGG | + | chr4_1:70506568-70506587 | Msa0568880:CDS | 25.0% |
| ! | AACTATTGCTTCTTTCATTA+AGG | + | chr4_1:70506649-70506668 | Msa0568880:CDS | 25.0% |
| ! | AAGCAGAACAAATAAAAGTT+GGG | - | chr4_1:70506694-70506713 | None:intergenic | 25.0% |
| ! | AAAGCAGAACAAATAAAAGT+TGG | - | chr4_1:70506695-70506714 | None:intergenic | 25.0% |
| ! | ACAAATAACATCATGGAATA+TGG | - | chr4_1:70506847-70506866 | None:intergenic | 25.0% |
| ! | TAGAAGAAAATGTAAGAAGT+AGG | + | chr4_1:70507130-70507149 | Msa0568880:intron | 25.0% |
| ! | AGAAGAAAATGTAAGAAGTA+GGG | + | chr4_1:70507131-70507150 | Msa0568880:intron | 25.0% |
| ! | TAGCAAAATCAAAGCAATTA+TGG | - | chr4_1:70507623-70507642 | None:intergenic | 25.0% |
| !!! | ATGCTATTTCAACTTTCAAT+TGG | + | chr4_1:70507877-70507896 | Msa0568880:intron | 25.0% |
| !!! | TTTCACAACGTATTTTTTTG+TGG | + | chr4_1:70508228-70508247 | Msa0568880:intron | 25.0% |
| ! | CATCAAATGATATTGAAACA+TGG | + | chr4_1:70508318-70508337 | Msa0568880:intron | 25.0% |
| !! | AAAAAAAAAAGTGGCTTGTA+AGG | - | chr4_1:70508686-70508705 | None:intergenic | 25.0% |
| ! | ATTTATTGTGAGCCATATTT+GGG | + | chr4_1:70508962-70508981 | Msa0568880:intron | 25.0% |
| ! | TCAATTAGAGATCTTACTAA+TGG | + | chr4_1:70509008-70509027 | Msa0568880:intron | 25.0% |
| ! | CAATTAGAGATCTTACTAAT+GGG | + | chr4_1:70509009-70509028 | Msa0568880:intron | 25.0% |
| !! | TTATATTTCAGGTGAAACAT+AGG | + | chr4_1:70509039-70509058 | Msa0568880:intron | 25.0% |
| ! | AAAAATCACTAAAATCACTG+CGG | + | chr4_1:70509393-70509412 | Msa0568880:CDS | 25.0% |
| AAGAATGATTTCTCTCCAAT+TGG | + | chr4_1:70504382-70504401 | Msa0568880:five_prime_UTR | 30.0% | |
| CCATTATGAATTGAACCAAT+TGG | - | chr4_1:70504400-70504419 | None:intergenic | 30.0% | |
| ! | CCAATTGGTTCAATTCATAA+TGG | + | chr4_1:70504397-70504416 | Msa0568880:five_prime_UTR | 30.0% |
| ! | ATTGGTTCAATTCATAATGG+TGG | + | chr4_1:70504400-70504419 | Msa0568880:five_prime_UTR | 30.0% |
| TGTGATGAAAAATTCATACC+TGG | - | chr4_1:70504434-70504453 | None:intergenic | 30.0% | |
| ! | AGGAATTTCTCAACTTGTTT+AGG | + | chr4_1:70504895-70504914 | Msa0568880:intron | 30.0% |
| !! | ATTGGATCAAGGTATTGAAA+GGG | - | chr4_1:70505029-70505048 | None:intergenic | 30.0% |
| !! | AATTGGATCAAGGTATTGAA+AGG | - | chr4_1:70505030-70505049 | None:intergenic | 30.0% |
| CAAACTAAAACTTTCCTACA+TGG | - | chr4_1:70505067-70505086 | None:intergenic | 30.0% | |
| !!! | CATGTAGGAAAGTTTTAGTT+TGG | + | chr4_1:70505065-70505084 | Msa0568880:intron | 30.0% |
| ACTTGTGATTATATGTTTGG+AGG | + | chr4_1:70505156-70505175 | Msa0568880:intron | 30.0% | |
| TAAATGGAGTAAGATACTCA+AGG | + | chr4_1:70505323-70505342 | Msa0568880:CDS | 30.0% | |
| ATCTCAATGTTTGGTTATGT+GGG | + | chr4_1:70505490-70505509 | Msa0568880:intron | 30.0% | |
| TCAAGTTAAAACAGATATGC+TGG | + | chr4_1:70505688-70505707 | Msa0568880:intron | 30.0% | |
| CTCAGTTAAGGATTCAAAAA+AGG | - | chr4_1:70505923-70505942 | None:intergenic | 30.0% | |
| TTCGACCAAATAAACCAATA+GGG | - | chr4_1:70506044-70506063 | None:intergenic | 30.0% | |
| TTTCGACCAAATAAACCAAT+AGG | - | chr4_1:70506045-70506064 | None:intergenic | 30.0% | |
| AAAATTATCTTCCACTTCCA+AGG | - | chr4_1:70506111-70506130 | None:intergenic | 30.0% | |
| TGAGATCTTCAAAAGATATC+CGG | + | chr4_1:70506130-70506149 | Msa0568880:intron | 30.0% | |
| TAGATATTGCTTCCACTATA+AGG | - | chr4_1:70506598-70506617 | None:intergenic | 30.0% | |
| ATTGCTTACACATGAATAGA+AGG | + | chr4_1:70507253-70507272 | Msa0568880:intron | 30.0% | |
| !!! | ATTGGTTTTTCCATCCAAAA+AGG | - | chr4_1:70507307-70507326 | None:intergenic | 30.0% |
| ATCAAAGCAATTATGGTGTA+CGG | - | chr4_1:70507616-70507635 | None:intergenic | 30.0% | |
| ! | AGAGCTAGTTTAGAAAAAGA+AGG | + | chr4_1:70507663-70507682 | Msa0568880:intron | 30.0% |
| ATATACTAAGCTTCCATTCA+TGG | - | chr4_1:70507807-70507826 | None:intergenic | 30.0% | |
| TCAATTGGCTAAATCTTATG+TGG | + | chr4_1:70507892-70507911 | Msa0568880:intron | 30.0% | |
| AAGTTCTATAGCATTCCATT+TGG | + | chr4_1:70507953-70507972 | Msa0568880:intron | 30.0% | |
| !! | TAGAAAAGTATCCAACCAAA+TGG | - | chr4_1:70507971-70507990 | None:intergenic | 30.0% |
| !!! | AGCTTATTTTTGAAATCTGC+CGG | - | chr4_1:70508080-70508099 | None:intergenic | 30.0% |
| TATTGTATGTTTGCATGAGA+TGG | - | chr4_1:70508185-70508204 | None:intergenic | 30.0% | |
| ! | TTTTATCCAATCACCAGTAT+CGG | + | chr4_1:70508251-70508270 | Msa0568880:intron | 30.0% |
| ! | GTTTTATATTTACCGCTTCA+TGG | + | chr4_1:70508418-70508437 | Msa0568880:intron | 30.0% |
| ! | GTCAAACATTTACTCTAAAG+AGG | + | chr4_1:70508452-70508471 | Msa0568880:intron | 30.0% |
| CATTTATTGTGAGCCATATT+TGG | + | chr4_1:70508961-70508980 | Msa0568880:intron | 30.0% | |
| ATGAAAAATTCATACCTGGC+TGG | - | chr4_1:70504430-70504449 | None:intergenic | 35.0% | |
| GATTAAATAGAGGGCCAAAA+AGG | + | chr4_1:70504527-70504546 | Msa0568880:intron | 35.0% | |
| !! | TGCTTAGGTTTGTTGCTTTA+GGG | - | chr4_1:70504627-70504646 | None:intergenic | 35.0% |
| ACTCATTCGATCATAAGTGT+CGG | + | chr4_1:70504842-70504861 | Msa0568880:intron | 35.0% | |
| CCAAAAAAGGAATTGGATCA+AGG | - | chr4_1:70505040-70505059 | None:intergenic | 35.0% | |
| !!! | CCTTGATCCAATTCCTTTTT+TGG | + | chr4_1:70505037-70505056 | Msa0568880:intron | 35.0% |
| !!! | GTAGGAAAGTTTTAGTTTGG+CGG | + | chr4_1:70505068-70505087 | Msa0568880:intron | 35.0% |
| !!! | TAGGAAAGTTTTAGTTTGGC+GGG | + | chr4_1:70505069-70505088 | Msa0568880:intron | 35.0% |
| !!! | AATTTTTGGGTTGCTCTAGA+TGG | + | chr4_1:70505227-70505246 | Msa0568880:exon | 35.0% |
| !!! | ATTTTTGGGTTGCTCTAGAT+GGG | + | chr4_1:70505228-70505247 | Msa0568880:exon | 35.0% |
| TACAACACATGGTTAAACTC+AGG | - | chr4_1:70505351-70505370 | None:intergenic | 35.0% | |
| ! | TCAAGGTTTGCTTATGATGT+TGG | + | chr4_1:70505391-70505410 | Msa0568880:intron | 35.0% |
| ACATTGAGATCCACATTTGA+CGG | - | chr4_1:70505480-70505499 | None:intergenic | 35.0% | |
| CAAATGTGGATCTCAATGTT+TGG | + | chr4_1:70505481-70505500 | Msa0568880:intron | 35.0% | |
| GATCTCAATGTTTGGTTATG+TGG | + | chr4_1:70505489-70505508 | Msa0568880:intron | 35.0% | |
| ATGGAGAAATATGAGTCTGA+AGG | + | chr4_1:70505526-70505545 | Msa0568880:CDS | 35.0% | |
| AATATGAGTCTGAAGGCAAA+TGG | + | chr4_1:70505533-70505552 | Msa0568880:CDS | 35.0% | |
| ACTCTCAGCTAGCAATAAAA+AGG | + | chr4_1:70505573-70505592 | Msa0568880:CDS | 35.0% | |
| CTCTCAGCTAGCAATAAAAA+GGG | + | chr4_1:70505574-70505593 | Msa0568880:CDS | 35.0% | |
| AGTAACAAGATTTACAGCCA+CGG | - | chr4_1:70505633-70505652 | None:intergenic | 35.0% | |
| AACAGATATGCTGGAAACTA+AGG | + | chr4_1:70505697-70505716 | Msa0568880:intron | 35.0% | |
| ACAGATATGCTGGAAACTAA+GGG | + | chr4_1:70505698-70505717 | Msa0568880:intron | 35.0% | |
| ! | AACCTTTTGATAGACCTTTC+CGG | - | chr4_1:70505725-70505744 | None:intergenic | 35.0% |
| TGGTTTATTTGGTCGAAATG+CGG | + | chr4_1:70506047-70506066 | Msa0568880:intron | 35.0% | |
| !! | CGAGTTTTGTGAATTATCCT+TGG | + | chr4_1:70506091-70506110 | Msa0568880:intron | 35.0% |
| TTGTGAATTATCCTTGGAAG+TGG | + | chr4_1:70506097-70506116 | Msa0568880:intron | 35.0% | |
| GAGATCTTCAAAAGATATCC+GGG | + | chr4_1:70506131-70506150 | Msa0568880:intron | 35.0% | |
| AGATCTTCAAAAGATATCCG+GGG | + | chr4_1:70506132-70506151 | Msa0568880:intron | 35.0% | |
| TAAAGTCTCGTCTTGTGTAT+TGG | - | chr4_1:70506184-70506203 | None:intergenic | 35.0% | |
| ! | GGCTTTTTGCAAAAAGATGA+CGG | + | chr4_1:70506216-70506235 | Msa0568880:intron | 35.0% |
| ! | TATTTTCCGTGATCTGTGAT+TGG | + | chr4_1:70506305-70506324 | Msa0568880:intron | 35.0% |
| ! | ATGAACCTTGTTTGCAGAAT+AGG | + | chr4_1:70506342-70506361 | Msa0568880:intron | 35.0% |
| TATGTCCTATTCTGCAAACA+AGG | - | chr4_1:70506350-70506369 | None:intergenic | 35.0% | |
| AAGCATACACTGTCAAAATG+AGG | - | chr4_1:70506545-70506564 | None:intergenic | 35.0% | |
| ! | AGCAATATCTAGCTTGAATG+AGG | + | chr4_1:70506607-70506626 | Msa0568880:CDS | 35.0% |
| AAGGTGACTACCTTGTAATA+TGG | + | chr4_1:70506931-70506950 | Msa0568880:intron | 35.0% | |
| CCTTCTACATAGAGTTCAAA+GGG | - | chr4_1:70507383-70507402 | None:intergenic | 35.0% | |
| ACCTTCTACATAGAGTTCAA+AGG | - | chr4_1:70507384-70507403 | None:intergenic | 35.0% | |
| TCAAGCTTCTTTGTGCAAAT+AGG | - | chr4_1:70507723-70507742 | None:intergenic | 35.0% | |
| CACAATAACCAGGTTTCAAA+AGG | - | chr4_1:70507773-70507792 | None:intergenic | 35.0% | |
| AATCACAAGTCACAATAACC+AGG | - | chr4_1:70507783-70507802 | None:intergenic | 35.0% | |
| ! | TGACTTGTGATTTCCATGAA+TGG | + | chr4_1:70507791-70507810 | Msa0568880:intron | 35.0% |
| CTTAGTATATCTTGACCCTT+TGG | + | chr4_1:70507817-70507836 | Msa0568880:intron | 35.0% | |
| TCTATAGCATTCCATTTGGT+TGG | + | chr4_1:70507957-70507976 | Msa0568880:intron | 35.0% | |
| AAATAAGCTGTCAGCAAAAC+TGG | + | chr4_1:70508091-70508110 | Msa0568880:CDS | 35.0% | |
| ATCTAGTGGAAAACTGATCA+AGG | + | chr4_1:70508124-70508143 | Msa0568880:CDS | 35.0% | |
| ACTTTACAACCCTATCCTAT+GGG | + | chr4_1:70508277-70508296 | Msa0568880:intron | 35.0% | |
| CTACATTAACCCATAGGATA+GGG | - | chr4_1:70508289-70508308 | None:intergenic | 35.0% | |
| ATGTTCCTACATTAACCCAT+AGG | - | chr4_1:70508295-70508314 | None:intergenic | 35.0% | |
| CTTAGTATTTGTCCATGAAG+CGG | - | chr4_1:70508433-70508452 | None:intergenic | 35.0% | |
| ! | CATTTACTCTAAAGAGGTAG+TGG | + | chr4_1:70508458-70508477 | Msa0568880:intron | 35.0% |
| !! | AGAGGTAGTGGATTTGTATT+CGG | + | chr4_1:70508470-70508489 | Msa0568880:intron | 35.0% |
| GAAAAACCAAAGTCTCACAT+TGG | + | chr4_1:70508492-70508511 | Msa0568880:intron | 35.0% | |
| ! | AAAAAAAGTGGCTTGTAAGG+AGG | - | chr4_1:70508683-70508702 | None:intergenic | 35.0% |
| ATGAGAATAGCACCCAAATA+TGG | - | chr4_1:70508977-70508996 | None:intergenic | 35.0% | |
| !!! | TTGGGTGCTATTCTCATTTT+TGG | + | chr4_1:70508980-70508999 | Msa0568880:intron | 35.0% |
| ! | TGGGTTGAGCTTTATATTTC+AGG | + | chr4_1:70509028-70509047 | Msa0568880:intron | 35.0% |
| TCCTCTATCTGAATATGCTT+GGG | - | chr4_1:70509081-70509100 | None:intergenic | 35.0% | |
| TTCCTCTATCTGAATATGCT+TGG | - | chr4_1:70509082-70509101 | None:intergenic | 35.0% | |
| AAACCGACCCATGTTATTAT+TGG | + | chr4_1:70509103-70509122 | Msa0568880:CDS | 35.0% | |
| CTTCCAATAATAACATGGGT+CGG | - | chr4_1:70509109-70509128 | None:intergenic | 35.0% | |
| GACCCATGTTATTATTGGAA+GGG | + | chr4_1:70509108-70509127 | Msa0568880:CDS | 35.0% | |
| CTCCCTTCCAATAATAACAT+GGG | - | chr4_1:70509113-70509132 | None:intergenic | 35.0% | |
| AAGCCTCTATTAAATCTGAC+AGG | + | chr4_1:70509138-70509157 | Msa0568880:CDS | 35.0% | |
| AGCCTCTATTAAATCTGACA+GGG | + | chr4_1:70509139-70509158 | Msa0568880:CDS | 35.0% | |
| AAAGTCCATGTCTTTACAAG+AGG | + | chr4_1:70509241-70509260 | Msa0568880:CDS | 35.0% | |
| GATTACCTCTTGTAAAGACA+TGG | - | chr4_1:70509249-70509268 | None:intergenic | 35.0% | |
| !! | CTGCTTAGGTTTGTTGCTTT+AGG | - | chr4_1:70504628-70504647 | None:intergenic | 40.0% |
| !!! | TAAGTGTCGGTGTTTTCTAG+AGG | + | chr4_1:70504855-70504874 | Msa0568880:intron | 40.0% |
| !! | TGTTTTCTAGAGGAGGGTAA+GGG | + | chr4_1:70504865-70504884 | Msa0568880:intron | 40.0% |
| TGGGTAGCCAAAAAAGGAAT+TGG | - | chr4_1:70505047-70505066 | None:intergenic | 40.0% | |
| !!! | AGGAAAGTTTTAGTTTGGCG+GGG | + | chr4_1:70505070-70505089 | Msa0568880:intron | 40.0% |
| ATAATAGTTCCATCTTGCCC+TGG | - | chr4_1:70505109-70505128 | None:intergenic | 40.0% | |
| ACAGAAATGGTCATCAGAAG+AGG | + | chr4_1:70505260-70505279 | Msa0568880:CDS | 40.0% | |
| TTGAGCGGATATACAACACA+TGG | - | chr4_1:70505362-70505381 | None:intergenic | 40.0% | |
| CCTTGAGATCGATATTTGAG+CGG | - | chr4_1:70505377-70505396 | None:intergenic | 40.0% | |
| AAATGTTGGACCGTCAAATG+TGG | + | chr4_1:70505467-70505486 | Msa0568880:intron | 40.0% | |
| ! | AATAAAAAGGGTGCGTCATC+AGG | + | chr4_1:70505586-70505605 | Msa0568880:CDS | 40.0% |
| GGAAAGGTCTATCAAAAGGT+TGG | + | chr4_1:70505724-70505743 | Msa0568880:intron | 40.0% | |
| ATAAGGGTCATGCTCAGTTA+AGG | - | chr4_1:70505935-70505954 | None:intergenic | 40.0% | |
| ATCGACCGTAATATCCCTAT+TGG | + | chr4_1:70506027-70506046 | Msa0568880:intron | 40.0% | |
| GGTTTATTTGGTCGAAATGC+GGG | + | chr4_1:70506048-70506067 | Msa0568880:intron | 40.0% | |
| CAAAACTCGATTCCACCAAA+CGG | - | chr4_1:70506080-70506099 | None:intergenic | 40.0% | |
| GATCTTCAAAAGATATCCGG+GGG | + | chr4_1:70506133-70506152 | Msa0568880:intron | 40.0% | |
| CCTAATTGAAAGACAATCGC+CGG | - | chr4_1:70506391-70506410 | None:intergenic | 40.0% | |
| CGGCGATTGTCTTTCAATTA+GGG | + | chr4_1:70506389-70506408 | Msa0568880:intron | 40.0% | |
| AAGCATACTAGCAAGGAAAC+TGG | - | chr4_1:70506448-70506467 | None:intergenic | 40.0% | |
| ATTAGGCAAGCATACTAGCA+AGG | - | chr4_1:70506455-70506474 | None:intergenic | 40.0% | |
| CAGATTGGACAACCTTATAG+TGG | + | chr4_1:70506583-70506602 | Msa0568880:CDS | 40.0% | |
| GTGACTACCTTGTAATATGG+AGG | + | chr4_1:70506934-70506953 | Msa0568880:intron | 40.0% | |
| CCTATGACCTCCATATTACA+AGG | - | chr4_1:70506944-70506963 | None:intergenic | 40.0% | |
| CCTTGTAATATGGAGGTCAT+AGG | + | chr4_1:70506941-70506960 | Msa0568880:intron | 40.0% | |
| CATTTATTACTCCAGTGCAC+AGG | - | chr4_1:70507048-70507067 | None:intergenic | 40.0% | |
| CAATTCTACGACTGCAAACA+AGG | - | chr4_1:70507108-70507127 | None:intergenic | 40.0% | |
| ACACATGAATAGAAGGCAAG+CGG | + | chr4_1:70507260-70507279 | Msa0568880:intron | 40.0% | |
| TGGATGGAAAAACCAATCCT+CGG | + | chr4_1:70507310-70507329 | Msa0568880:intron | 40.0% | |
| AATGTTGTGTTTCCGAGGAT+TGG | - | chr4_1:70507325-70507344 | None:intergenic | 40.0% | |
| AACACAACATTCATGGACCT+AGG | + | chr4_1:70507334-70507353 | Msa0568880:intron | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | - | chr4_1:70507354-70507373 | None:intergenic | 40.0% | |
| CCCTTTGAACTCTATGTAGA+AGG | + | chr4_1:70507380-70507399 | Msa0568880:intron | 40.0% | |
| !! | CGGAAAGTGTCAAAAGCAAA+TGG | + | chr4_1:70507427-70507446 | Msa0568880:intron | 40.0% |
| AGAACACGCTTTCTCATGTT+TGG | + | chr4_1:70507471-70507490 | Msa0568880:intron | 40.0% | |
| ! | TCATGTTTGGCCACTTTGTT+TGG | + | chr4_1:70507484-70507503 | Msa0568880:intron | 40.0% |
| ! | TTTGTTTGGCGCAGCTTTTA+GGG | + | chr4_1:70507498-70507517 | Msa0568880:intron | 40.0% |
| TATCACCACTTGTGGGATTA+GGG | - | chr4_1:70507552-70507571 | None:intergenic | 40.0% | |
| AGCAATTATGGTGTACGGAT+GGG | - | chr4_1:70507611-70507630 | None:intergenic | 40.0% | |
| AAGCAATTATGGTGTACGGA+TGG | - | chr4_1:70507612-70507631 | None:intergenic | 40.0% | |
| !! | AAACTAGCTCTGCTTCATGA+TGG | - | chr4_1:70507654-70507673 | None:intergenic | 40.0% |
| TTCACTTGTCTTTCAGCACA+TGG | - | chr4_1:70507700-70507719 | None:intergenic | 40.0% | |
| TTTGCACAAAGAAGCTTGAG+TGG | + | chr4_1:70507724-70507743 | Msa0568880:intron | 40.0% | |
| TAGATCGCATTCTACCACAA+GGG | - | chr4_1:70507855-70507874 | None:intergenic | 40.0% | |
| ATAGATCGCATTCTACCACA+AGG | - | chr4_1:70507856-70507875 | None:intergenic | 40.0% | |
| CACTTTACAACCCTATCCTA+TGG | + | chr4_1:70508276-70508295 | Msa0568880:intron | 40.0% | |
| CCTACATTAACCCATAGGAT+AGG | - | chr4_1:70508290-70508309 | None:intergenic | 40.0% | |
| ! | CCTATCCTATGGGTTAATGT+AGG | + | chr4_1:70508287-70508306 | Msa0568880:intron | 40.0% |
| AAGATAGGGGATGTAAAGAC+AGG | - | chr4_1:70508370-70508389 | None:intergenic | 40.0% | |
| !! | ATCCCCTATCTTTTGAGAGT+GGG | + | chr4_1:70508378-70508397 | Msa0568880:intron | 40.0% |
| AACCCACTCTCAAAAGATAG+GGG | - | chr4_1:70508383-70508402 | None:intergenic | 40.0% | |
| GAACCCACTCTCAAAAGATA+GGG | - | chr4_1:70508384-70508403 | None:intergenic | 40.0% | |
| AGAACCCACTCTCAAAAGAT+AGG | - | chr4_1:70508385-70508404 | None:intergenic | 40.0% | |
| TCTCACATTGGCCAGAAATA+AGG | + | chr4_1:70508504-70508523 | Msa0568880:intron | 40.0% | |
| !! | CTCTACTTAGGCCTTATTTC+TGG | - | chr4_1:70508518-70508537 | None:intergenic | 40.0% |
| !! | CAACTTCTAAGGCTCTACTT+AGG | - | chr4_1:70508530-70508549 | None:intergenic | 40.0% |
| CTAAGTAGAGCCTTAGAAGT+TGG | + | chr4_1:70508528-70508547 | Msa0568880:intron | 40.0% | |
| ACACTACTGAACTTGGTTCA+TGG | - | chr4_1:70508582-70508601 | None:intergenic | 40.0% | |
| TGAACCAAGTTCAGTAGTGT+TGG | + | chr4_1:70508582-70508601 | Msa0568880:intron | 40.0% | |
| GAACCAAGTTCAGTAGTGTT+GGG | + | chr4_1:70508583-70508602 | Msa0568880:intron | 40.0% | |
| AAAAACTCGTGCGTGAGATA+AGG | + | chr4_1:70508625-70508644 | Msa0568880:intron | 40.0% | |
| CTATCTGAATATGCTTGGGT+AGG | - | chr4_1:70509077-70509096 | None:intergenic | 40.0% | |
| ACCCAAGCATATTCAGATAG+AGG | + | chr4_1:70509077-70509096 | Msa0568880:CDS | 40.0% | |
| CGACCCATGTTATTATTGGA+AGG | + | chr4_1:70509107-70509126 | Msa0568880:CDS | 40.0% | |
| CCTCCCTTCCAATAATAACA+TGG | - | chr4_1:70509114-70509133 | None:intergenic | 40.0% | |
| CCATGTTATTATTGGAAGGG+AGG | + | chr4_1:70509111-70509130 | Msa0568880:CDS | 40.0% | |
| GCCTCTATTAAATCTGACAG+GGG | + | chr4_1:70509140-70509159 | Msa0568880:CDS | 40.0% | |
| ACCCCTGTCAGATTTAATAG+AGG | - | chr4_1:70509144-70509163 | None:intergenic | 40.0% | |
| TCTATTAAATCTGACAGGGG+TGG | + | chr4_1:70509143-70509162 | Msa0568880:CDS | 40.0% | |
| CTATTAAATCTGACAGGGGT+GGG | + | chr4_1:70509144-70509163 | Msa0568880:CDS | 40.0% | |
| TATTAAATCTGACAGGGGTG+GGG | + | chr4_1:70509145-70509164 | Msa0568880:CDS | 40.0% | |
| AAGAAAGGCTGAGATAGACT+TGG | + | chr4_1:70509205-70509224 | Msa0568880:CDS | 40.0% | |
| AAAATTCATACCTGGCTGGC+TGG | - | chr4_1:70504426-70504445 | None:intergenic | 45.0% | |
| TATTGCTTGCTCGCCAAGTT+TGG | - | chr4_1:70504502-70504521 | None:intergenic | 45.0% | |
| AGAATGTGGATTCGCTGCTT+AGG | - | chr4_1:70504642-70504661 | None:intergenic | 45.0% | |
| ! | TGCGGTTCTGACGCAATTTA+GGG | + | chr4_1:70504762-70504781 | Msa0568880:intron | 45.0% |
| !! | TGTCGGTGTTTTCTAGAGGA+GGG | + | chr4_1:70504859-70504878 | Msa0568880:intron | 45.0% |
| !! | GTGTTTTCTAGAGGAGGGTA+AGG | + | chr4_1:70504864-70504883 | Msa0568880:intron | 45.0% |
| AGGAGGGTAAGGGAATGAAT+AGG | + | chr4_1:70504875-70504894 | Msa0568880:intron | 45.0% | |
| CCTACATGGGTAGCCAAAAA+AGG | - | chr4_1:70505053-70505072 | None:intergenic | 45.0% | |
| !!! | CCTTTTTTGGCTACCCATGT+AGG | + | chr4_1:70505050-70505069 | Msa0568880:intron | 45.0% |
| !!! | GGAAAGTTTTAGTTTGGCGG+GGG | + | chr4_1:70505071-70505090 | Msa0568880:intron | 45.0% |
| !! | TGGGTGCTACTAGACAGAAA+TGG | + | chr4_1:70505247-70505266 | Msa0568880:CDS | 45.0% |
| ATGGTCATCAGAAGAGGAAG+CGG | + | chr4_1:70505266-70505285 | Msa0568880:CDS | 45.0% | |
| AAAGCTGGAGTTGTGAAGCA+TGG | + | chr4_1:70505294-70505313 | Msa0568880:CDS | 45.0% | |
| TGAAGCATGGCGTAGGTAAA+TGG | + | chr4_1:70505307-70505326 | Msa0568880:CDS | 45.0% | |
| CCGCTCAAATATCGATCTCA+AGG | + | chr4_1:70505374-70505393 | Msa0568880:CDS | 45.0% | |
| CAATGTTTGGTTATGTGGGC+TGG | + | chr4_1:70505494-70505513 | Msa0568880:intron | 45.0% | |
| !! | TTTGGTTATGTGGGCTGGAT+AGG | + | chr4_1:70505499-70505518 | Msa0568880:intron | 45.0% |
| !! | TGTGGGCTGGATAGGATAAA+TGG | + | chr4_1:70505507-70505526 | Msa0568880:intron | 45.0% |
| AAGGCAAATGGATCATCCTC+CGG | + | chr4_1:70505545-70505564 | Msa0568880:CDS | 45.0% | |
| TATGCTGGAAACTAAGGGTC+CGG | + | chr4_1:70505703-70505722 | Msa0568880:intron | 45.0% | |
| GTCCGGAAAGGTCTATCAAA+AGG | + | chr4_1:70505720-70505739 | Msa0568880:intron | 45.0% | |
| AAGACGAGACTTTACCACAG+TGG | + | chr4_1:70506190-70506209 | Msa0568880:intron | 45.0% | |
| GTGTTGCCAATCACAGATCA+CGG | - | chr4_1:70506314-70506333 | None:intergenic | 45.0% | |
| CCGGCGATTGTCTTTCAATT+AGG | + | chr4_1:70506388-70506407 | Msa0568880:intron | 45.0% | |
| CTGGATGATCTTAACACGCT+TGG | - | chr4_1:70506429-70506448 | None:intergenic | 45.0% | |
| ! | GTTTTGCTAGCATCGTGTAG+AGG | + | chr4_1:70506486-70506505 | Msa0568880:intron | 45.0% |
| ! | TCTAGCTTGAATGAGGTCGA+TGG | + | chr4_1:70506614-70506633 | Msa0568880:CDS | 45.0% |
| CACATGAATAGAAGGCAAGC+GGG | + | chr4_1:70507261-70507280 | Msa0568880:intron | 45.0% | |
| CCATGAATGTTGTGTTTCCG+AGG | - | chr4_1:70507330-70507349 | None:intergenic | 45.0% | |
| CCTCGGAAACACAACATTCA+TGG | + | chr4_1:70507327-70507346 | Msa0568880:intron | 45.0% | |
| TGTAGAAGGTTAACACCCTC+TGG | + | chr4_1:70507394-70507413 | Msa0568880:intron | 45.0% | |
| AAAAGCTGCGCCAAACAAAG+TGG | - | chr4_1:70507497-70507516 | None:intergenic | 45.0% | |
| !! | CTTTGTTTGGCGCAGCTTTT+AGG | + | chr4_1:70507497-70507516 | Msa0568880:intron | 45.0% |
| ATCACCACTTGTGGGATTAG+GGG | - | chr4_1:70507551-70507570 | None:intergenic | 45.0% | |
| GTATCACCACTTGTGGGATT+AGG | - | chr4_1:70507553-70507572 | None:intergenic | 45.0% | |
| ATGCATGTGTGGACTTGACT+GGG | - | chr4_1:70507576-70507595 | None:intergenic | 45.0% | |
| AGGAGGAAAACATGCATGTG+TGG | - | chr4_1:70507587-70507606 | None:intergenic | 45.0% | |
| ATTATGGTGTACGGATGGGT+AGG | - | chr4_1:70507607-70507626 | None:intergenic | 45.0% | |
| !! | TTCAAAAGGCTTCGAGTTGC+AGG | - | chr4_1:70507759-70507778 | None:intergenic | 45.0% |
| !!! | ACTCGAAGCCTTTTGAAACC+TGG | + | chr4_1:70507762-70507781 | Msa0568880:intron | 45.0% |
| AGATCGCATTCTACCACAAG+GGG | - | chr4_1:70507854-70507873 | None:intergenic | 45.0% | |
| TAAGCTGTCAGCAAAACTGG+TGG | + | chr4_1:70508094-70508113 | Msa0568880:CDS | 45.0% | |
| ! | CTGGTGGATCTTGTATCTAG+TGG | + | chr4_1:70508110-70508129 | Msa0568880:CDS | 45.0% |
| ! | GTTGTAAAGTGCACCGATAC+TGG | - | chr4_1:70508267-70508286 | None:intergenic | 45.0% |
| GATATCCCCATTTGTAGCAG+AGG | + | chr4_1:70508340-70508359 | Msa0568880:intron | 45.0% | |
| GTCAACCTCTGCTACAAATG+GGG | - | chr4_1:70508348-70508367 | None:intergenic | 45.0% | |
| GGTCAACCTCTGCTACAAAT+GGG | - | chr4_1:70508349-70508368 | None:intergenic | 45.0% | |
| AGGTCAACCTCTGCTACAAA+TGG | - | chr4_1:70508350-70508369 | None:intergenic | 45.0% | |
| !! | CATCCCCTATCTTTTGAGAG+TGG | + | chr4_1:70508377-70508396 | Msa0568880:intron | 45.0% |
| TTCTGGCCAATGTGAGACTT+TGG | - | chr4_1:70508501-70508520 | None:intergenic | 45.0% | |
| TAGAGCCTTAGAAGTTGGCT+TGG | + | chr4_1:70508533-70508552 | Msa0568880:intron | 45.0% | |
| ACACCCAACACTACTGAACT+TGG | - | chr4_1:70508589-70508608 | None:intergenic | 45.0% | |
| ATTAAATCTGACAGGGGTGG+GGG | + | chr4_1:70509146-70509165 | Msa0568880:CDS | 45.0% | |
| GGCTGAGATAGACTTGGAAT+TGG | + | chr4_1:70509211-70509230 | Msa0568880:CDS | 45.0% | |
| AGAAGCTGAAGAGGCAACAA+AGG | + | chr4_1:70509313-70509332 | Msa0568880:CDS | 45.0% | |
| TTCTCACCCCTAACTTCCGA+CGG | - | chr4_1:70504676-70504695 | None:intergenic | 50.0% | |
| ACAGGGAGAGGAAGGGAAAT+CGG | - | chr4_1:70504729-70504748 | None:intergenic | 50.0% | |
| ! | GTGCGGTTCTGACGCAATTT+AGG | + | chr4_1:70504761-70504780 | Msa0568880:intron | 50.0% |
| GCCATAGGAGAGAAAGGGAA+GGG | + | chr4_1:70504786-70504805 | Msa0568880:intron | 50.0% | |
| TCCCTTCCCTTTCTCTCCTA+TGG | - | chr4_1:70504790-70504809 | None:intergenic | 50.0% | |
| TAGGAGAGAAAGGGAAGGGA+AGG | + | chr4_1:70504790-70504809 | Msa0568880:intron | 50.0% | |
| AGGAGAGAAAGGGAAGGGAA+GGG | + | chr4_1:70504791-70504810 | Msa0568880:intron | 50.0% | |
| !! | GTGTCGGTGTTTTCTAGAGG+AGG | + | chr4_1:70504858-70504877 | Msa0568880:intron | 50.0% |
| GGGGGAAAAATAGTTCGCCA+GGG | + | chr4_1:70505089-70505108 | Msa0568880:intron | 50.0% | |
| AATAGTTCGCCAGGGCAAGA+TGG | + | chr4_1:70505097-70505116 | Msa0568880:intron | 50.0% | |
| AGGCAAATGGATCATCCTCC+GGG | + | chr4_1:70505546-70505565 | Msa0568880:CDS | 50.0% | |
| TGGAAACTAAGGGTCCGGAA+AGG | + | chr4_1:70505708-70505727 | Msa0568880:intron | 50.0% | |
| AAATGCGGGAAAGCTCCGTT+TGG | + | chr4_1:70506062-70506081 | Msa0568880:intron | 50.0% | |
| CACTAGTCACAATGAACCCC+CGG | - | chr4_1:70506152-70506171 | None:intergenic | 50.0% | |
| GAGACTTTACCACAGTGGAG+CGG | + | chr4_1:70506195-70506214 | Msa0568880:intron | 50.0% | |
| CTTCATCTGCAAGCGAACCT+TGG | + | chr4_1:70506899-70506918 | Msa0568880:intron | 50.0% | |
| CGAACCTTGGCACATTGGTA+AGG | + | chr4_1:70506912-70506931 | Msa0568880:intron | 50.0% | |
| GTCACCTTACCAATGTGCCA+AGG | - | chr4_1:70506919-70506938 | None:intergenic | 50.0% | |
| ! | CGCTGCTAAGCCTTTTTGGA+TGG | + | chr4_1:70507294-70507313 | Msa0568880:intron | 50.0% |
| ! | ATTAGGGGTCGGGGCTTTTA+TGG | - | chr4_1:70507536-70507555 | None:intergenic | 50.0% |
| ! | ACTGGGGTATCACCACTTGT+GGG | - | chr4_1:70507559-70507578 | None:intergenic | 50.0% |
| TGCATGTGTGGACTTGACTG+GGG | - | chr4_1:70507575-70507594 | None:intergenic | 50.0% | |
| CATGCATGTGTGGACTTGAC+TGG | - | chr4_1:70507577-70507596 | None:intergenic | 50.0% | |
| ! | GGGGCATTTGAAGCACCAAA+GGG | - | chr4_1:70507835-70507854 | None:intergenic | 50.0% |
| !! | AGGGGCATTTGAAGCACCAA+AGG | - | chr4_1:70507836-70507855 | None:intergenic | 50.0% |
| GTAGAACCAATACTGCGCAC+CGG | + | chr4_1:70508058-70508077 | Msa0568880:intron | 50.0% | |
| ! | AGTGCACCGATACTGGTGAT+TGG | - | chr4_1:70508260-70508279 | None:intergenic | 50.0% |
| !! | AGCCTTAGAAGTTGGCTTGG+TGG | + | chr4_1:70508536-70508555 | Msa0568880:intron | 50.0% |
| CTCCACCAAGCCAACTTCTA+AGG | - | chr4_1:70508541-70508560 | None:intergenic | 50.0% | |
| ! | TGCTGCTTAGATACAGCTGC+TGG | + | chr4_1:70508791-70508810 | Msa0568880:intron | 50.0% |
| ! | ACAGCTGCTGGTTGTGAGTT+TGG | + | chr4_1:70508803-70508822 | Msa0568880:intron | 50.0% |
| ! | CAGCTGCTGGTTGTGAGTTT+GGG | + | chr4_1:70508804-70508823 | Msa0568880:intron | 50.0% |
| AGCTGAAGAGGCAACAAAGG+AGG | + | chr4_1:70509316-70509335 | Msa0568880:CDS | 50.0% | |
| AGAAGCAGAAGCTGATGCAG+CGG | + | chr4_1:70509349-70509368 | Msa0568880:CDS | 50.0% | |
| ATTCTCAACGCAGCAGCCGT+CGG | + | chr4_1:70504657-70504676 | Msa0568880:intron | 55.0% | |
| ! | GACGCAATTTAGGGCGCCAT+AGG | + | chr4_1:70504771-70504790 | Msa0568880:intron | 55.0% |
| ! | TAGGGCGCCATAGGAGAGAA+AGG | + | chr4_1:70504780-70504799 | Msa0568880:intron | 55.0% |
| ! | AGGGCGCCATAGGAGAGAAA+GGG | + | chr4_1:70504781-70504800 | Msa0568880:intron | 55.0% |
| CGCCATAGGAGAGAAAGGGA+AGG | + | chr4_1:70504785-70504804 | Msa0568880:intron | 55.0% | |
| CGGGGGAAAAATAGTTCGCC+AGG | + | chr4_1:70505088-70505107 | Msa0568880:intron | 55.0% | |
| GGAGTTGTGAAGCATGGCGT+AGG | + | chr4_1:70505300-70505319 | Msa0568880:CDS | 55.0% | |
| GGCAAATGGATCATCCTCCG+GGG | + | chr4_1:70505547-70505566 | Msa0568880:CDS | 55.0% | |
| TGCTAGCTGAGAGTTGTCCC+CGG | - | chr4_1:70505567-70505586 | None:intergenic | 55.0% | |
| TGCAAAAAGCCGCTCCACTG+TGG | - | chr4_1:70506207-70506226 | None:intergenic | 55.0% | |
| GCAAGCGAACCTTGGCACAT+TGG | + | chr4_1:70506907-70506926 | Msa0568880:intron | 55.0% | |
| ACTCCCTAGAACCCACCTAG+TGG | + | chr4_1:70507019-70507038 | Msa0568880:intron | 55.0% | |
| CTCCCTAGAACCCACCTAGT+GGG | + | chr4_1:70507020-70507039 | Msa0568880:intron | 55.0% | |
| ! | CTCCCACTAGGTGGGTTCTA+GGG | - | chr4_1:70507025-70507044 | None:intergenic | 55.0% |
| ! | GCTGCGCTGCTAAGCCTTTT+TGG | + | chr4_1:70507290-70507309 | Msa0568880:intron | 55.0% |
| GGTTAACACCCTCTGGTGCT+AGG | + | chr4_1:70507401-70507420 | Msa0568880:intron | 55.0% | |
| TTCCGCTTCCTAGCACCAGA+GGG | - | chr4_1:70507412-70507431 | None:intergenic | 55.0% | |
| TTTCCGCTTCCTAGCACCAG+AGG | - | chr4_1:70507413-70507432 | None:intergenic | 55.0% | |
| ACTTGTGGGATTAGGGGTCG+GGG | - | chr4_1:70507545-70507564 | None:intergenic | 55.0% | |
| CACTTGTGGGATTAGGGGTC+GGG | - | chr4_1:70507546-70507565 | None:intergenic | 55.0% | |
| CCACTTGTGGGATTAGGGGT+CGG | - | chr4_1:70507547-70507566 | None:intergenic | 55.0% | |
| ! | GACTGGGGTATCACCACTTG+TGG | - | chr4_1:70507560-70507579 | None:intergenic | 55.0% |
| ATGGTGTACGGATGGGTAGG+AGG | - | chr4_1:70507604-70507623 | None:intergenic | 55.0% | |
| GGTGCTTCAAATGCCCCTTG+TGG | + | chr4_1:70507838-70507857 | Msa0568880:intron | 55.0% | |
| AATCTGCCGGTGCGCAGTAT+TGG | - | chr4_1:70508067-70508086 | None:intergenic | 55.0% | |
| CTCTTCAGCTTCTGCCATGG+CGG | - | chr4_1:70509306-70509325 | None:intergenic | 55.0% | |
| TGCCTCTTCAGCTTCTGCCA+TGG | - | chr4_1:70509309-70509328 | None:intergenic | 55.0% | |
| AGAGGCAACAAAGGAGGCAG+AGG | + | chr4_1:70509322-70509341 | Msa0568880:CDS | 55.0% | |
| ATAATGGTGGCCAGCCAGCC+AGG | + | chr4_1:70504413-70504432 | Msa0568880:five_prime_UTR | 60.0% | |
| CGGCTGCTGCGTTGAGAATG+TGG | - | chr4_1:70504656-70504675 | None:intergenic | 60.0% | |
| GCAGCAGCCGTCGGAAGTTA+GGG | + | chr4_1:70504666-70504685 | Msa0568880:intron | 60.0% | |
| CAGCAGCCGTCGGAAGTTAG+GGG | + | chr4_1:70504667-70504686 | Msa0568880:intron | 60.0% | |
| GCGTCAGAACCGCACGTTCA+CGG | - | chr4_1:70504756-70504775 | None:intergenic | 60.0% | |
| GAGGAAGCGGCTCTCAAAGC+TGG | + | chr4_1:70505279-70505298 | Msa0568880:CDS | 60.0% | |
| TAGCTGAGAGTTGTCCCCGG+AGG | - | chr4_1:70505564-70505583 | None:intergenic | 60.0% | |
| ACGGAGTCGTCACGCTGTTC+TGG | - | chr4_1:70505614-70505633 | None:intergenic | 60.0% | |
| AGAACAGCGTGACGACTCCG+TGG | + | chr4_1:70505613-70505632 | Msa0568880:CDS | 60.0% | |
| TGCGGGAAAGCTCCGTTTGG+TGG | + | chr4_1:70506065-70506084 | Msa0568880:intron | 60.0% | |
| CAAGCGGAGAGGCTGTTGCA+AGG | - | chr4_1:70506974-70506993 | None:intergenic | 60.0% | |
| TGCAACAGCCTCTCCGCTTG+CGG | + | chr4_1:70506974-70506993 | Msa0568880:intron | 60.0% | |
| AGCAGCCTTACACCCGCAAG+CGG | - | chr4_1:70506990-70507009 | None:intergenic | 60.0% | |
| ! | GCTCCCACTAGGTGGGTTCT+AGG | - | chr4_1:70507026-70507045 | None:intergenic | 60.0% |
| TGCACAGGCTCCCACTAGGT+GGG | - | chr4_1:70507033-70507052 | None:intergenic | 60.0% | |
| ! | CACCCTCTGGTGCTAGGAAG+CGG | + | chr4_1:70507407-70507426 | Msa0568880:intron | 60.0% |
| ! | GGGGTCGGGGCTTTTATGGT+AGG | - | chr4_1:70507532-70507551 | None:intergenic | 60.0% |
| CCGACCCCTAATCCCACAAG+TGG | + | chr4_1:70507544-70507563 | Msa0568880:intron | 60.0% | |
| TGCTGAAGCAGAAGCCGCCA+TGG | + | chr4_1:70509289-70509308 | Msa0568880:CDS | 60.0% | |
| CGCCATGGCAGAAGCTGAAG+AGG | + | chr4_1:70509304-70509323 | Msa0568880:CDS | 60.0% | |
| CGCAGCAGCCGTCGGAAGTT+AGG | + | chr4_1:70504665-70504684 | Msa0568880:intron | 65.0% | |
| CGGCGCTACAGGGAGAGGAA+GGG | - | chr4_1:70504736-70504755 | None:intergenic | 65.0% | |
| ACGGCGCTACAGGGAGAGGA+AGG | - | chr4_1:70504737-70504756 | None:intergenic | 65.0% | |
| GTTCACGGCGCTACAGGGAG+AGG | - | chr4_1:70504741-70504760 | None:intergenic | 65.0% | |
| CGCACGTTCACGGCGCTACA+GGG | - | chr4_1:70504746-70504765 | None:intergenic | 65.0% | |
| CCTGTAGCGCCGTGAACGTG+CGG | + | chr4_1:70504744-70504763 | Msa0568880:intron | 65.0% | |
| GCAACAGCCTCTCCGCTTGC+GGG | + | chr4_1:70506975-70506994 | Msa0568880:intron | 65.0% | |
| CCTTACACCCGCAAGCGGAG+AGG | - | chr4_1:70506985-70507004 | None:intergenic | 65.0% | |
| CCTCTCCGCTTGCGGGTGTA+AGG | + | chr4_1:70506982-70507001 | Msa0568880:intron | 65.0% | |
| GTGCACAGGCTCCCACTAGG+TGG | - | chr4_1:70507034-70507053 | None:intergenic | 65.0% | |
| CCAGTGCACAGGCTCCCACT+AGG | - | chr4_1:70507037-70507056 | None:intergenic | 65.0% | |
| CCTAGTGGGAGCCTGTGCAC+TGG | + | chr4_1:70507034-70507053 | Msa0568880:intron | 65.0% | |
| CCGCACGTTCACGGCGCTAC+AGG | - | chr4_1:70504747-70504766 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 70504349 | 70509418 | 70504349 | ID=Msa0568880;Name=Msa0568880 |
| chr4_1 | mRNA | 70504349 | 70509418 | 70504349 | ID=Msa0568880-mRNA-1;Parent=Msa0568880;Name=Msa0568880-mRNA-1;_AED=0.15;_eAED=0.15;_QI=114|0.4|0.33|1|0.8|0.66|6|0|312 |
| chr4_1 | exon | 70504349 | 70504434 | 70504349 | ID=Msa0568880-mRNA-1:exon:23794;Parent=Msa0568880-mRNA-1 |
| chr4_1 | exon | 70505218 | 70505395 | 70505218 | ID=Msa0568880-mRNA-1:exon:23795;Parent=Msa0568880-mRNA-1 |
| chr4_1 | exon | 70505521 | 70505691 | 70505521 | ID=Msa0568880-mRNA-1:exon:23796;Parent=Msa0568880-mRNA-1 |
| chr4_1 | exon | 70506506 | 70506670 | 70506506 | ID=Msa0568880-mRNA-1:exon:23797;Parent=Msa0568880-mRNA-1 |
| chr4_1 | exon | 70508062 | 70508145 | 70508062 | ID=Msa0568880-mRNA-1:exon:23798;Parent=Msa0568880-mRNA-1 |
| chr4_1 | exon | 70509050 | 70509418 | 70509050 | ID=Msa0568880-mRNA-1:exon:23799;Parent=Msa0568880-mRNA-1 |
| chr4_1 | five_prime_UTR | 70504349 | 70504434 | 70504349 | ID=Msa0568880-mRNA-1:five_prime_utr;Parent=Msa0568880-mRNA-1 |
| chr4_1 | five_prime_UTR | 70505218 | 70505245 | 70505218 | ID=Msa0568880-mRNA-1:five_prime_utr;Parent=Msa0568880-mRNA-1 |
| chr4_1 | CDS | 70505246 | 70505395 | 70505246 | ID=Msa0568880-mRNA-1:cds;Parent=Msa0568880-mRNA-1 |
| chr4_1 | CDS | 70505521 | 70505691 | 70505521 | ID=Msa0568880-mRNA-1:cds;Parent=Msa0568880-mRNA-1 |
| chr4_1 | CDS | 70506506 | 70506670 | 70506506 | ID=Msa0568880-mRNA-1:cds;Parent=Msa0568880-mRNA-1 |
| chr4_1 | CDS | 70508062 | 70508145 | 70508062 | ID=Msa0568880-mRNA-1:cds;Parent=Msa0568880-mRNA-1 |
| chr4_1 | CDS | 70509050 | 70509418 | 70509050 | ID=Msa0568880-mRNA-1:cds;Parent=Msa0568880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
