Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568980 | AET04690.2 | 70.032 | 317 | 44 | 7 | 1 | 309 | 1 | 274 | 6.85e-130 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568980 | sp|Q8H7S7|ORR21_ORYSJ | 38.589 | 241 | 106 | 1 | 13 | 211 | 11 | 251 | 1.44e-48 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568980 | G7LD51 | 70.032 | 317 | 44 | 7 | 1 | 309 | 1 | 274 | 3.27e-130 | 382 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0568980 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568980 | MtrunA17_Chr8g0383961 | 70.347 | 317 | 33 | 8 | 1 | 309 | 1 | 264 | 3.68e-132 | 377 |
| Msa0568980 | MtrunA17_Chr6g0471041 | 52.484 | 322 | 116 | 6 | 1 | 312 | 1 | 295 | 2.15e-99 | 299 |
| Msa0568980 | MtrunA17_Chr4g0009851 | 47.478 | 337 | 135 | 9 | 1 | 322 | 1 | 310 | 4.75e-90 | 271 |
| Msa0568980 | MtrunA17_Chr4g0009981 | 45.878 | 279 | 113 | 7 | 59 | 322 | 2 | 257 | 4.23e-70 | 219 |
| Msa0568980 | MtrunA17_Chr1g0161431 | 36.579 | 380 | 172 | 7 | 12 | 329 | 9 | 381 | 9.34e-68 | 223 |
| Msa0568980 | MtrunA17_Chr4g0009901 | 43.624 | 298 | 127 | 7 | 1 | 287 | 1 | 268 | 1.54e-67 | 213 |
| Msa0568980 | MtrunA17_Chr8g0391911 | 43.154 | 241 | 99 | 5 | 9 | 212 | 4 | 243 | 3.54e-54 | 178 |
| Msa0568980 | MtrunA17_Chr2g0294911 | 42.918 | 233 | 99 | 2 | 13 | 211 | 28 | 260 | 9.71e-52 | 180 |
| Msa0568980 | MtrunA17_Chr8g0376881 | 38.735 | 253 | 119 | 2 | 14 | 230 | 25 | 277 | 4.01e-50 | 174 |
| Msa0568980 | MtrunA17_Chr4g0067981 | 40.851 | 235 | 103 | 2 | 13 | 211 | 30 | 264 | 4.50e-49 | 174 |
| Msa0568980 | MtrunA17_Chr3g0123131 | 38.983 | 236 | 106 | 3 | 14 | 211 | 13 | 248 | 3.23e-47 | 167 |
| Msa0568980 | MtrunA17_Chr6g0456631 | 47.134 | 157 | 70 | 4 | 9 | 153 | 4 | 159 | 7.76e-42 | 143 |
| Msa0568980 | MtrunA17_Chr3g0134481 | 37.624 | 202 | 102 | 1 | 13 | 214 | 7 | 184 | 6.68e-41 | 141 |
| Msa0568980 | MtrunA17_Chr4g0011071 | 50.735 | 136 | 56 | 2 | 61 | 185 | 36 | 171 | 1.07e-40 | 140 |
| Msa0568980 | MtrunA17_Chr4g0074411 | 35.193 | 233 | 116 | 2 | 14 | 211 | 18 | 250 | 8.30e-40 | 147 |
| Msa0568980 | MtrunA17_Chr3g0137101 | 35.270 | 241 | 114 | 3 | 13 | 211 | 7 | 247 | 1.33e-38 | 144 |
| Msa0568980 | MtrunA17_Chr4g0074401 | 36.441 | 236 | 112 | 3 | 14 | 211 | 17 | 252 | 1.46e-38 | 144 |
| Msa0568980 | MtrunA17_Chr1g0149841 | 35.021 | 237 | 116 | 2 | 13 | 211 | 4 | 240 | 1.67e-37 | 140 |
| Msa0568980 | MtrunA17_Chr4g0009991 | 54.167 | 120 | 45 | 2 | 106 | 215 | 1 | 120 | 3.77e-37 | 129 |
| Msa0568980 | MtrunA17_Chr2g0304841 | 31.621 | 253 | 126 | 3 | 6 | 211 | 10 | 262 | 4.31e-36 | 137 |
| Msa0568980 | MtrunA17_Chr3g0134461 | 36.946 | 203 | 113 | 3 | 13 | 214 | 7 | 195 | 9.39e-36 | 128 |
| Msa0568980 | MtrunA17_Chr7g0275401 | 32.773 | 238 | 121 | 3 | 13 | 211 | 4 | 241 | 1.16e-35 | 130 |
| Msa0568980 | MtrunA17_Chr7g0275891 | 32.000 | 250 | 119 | 4 | 13 | 211 | 4 | 253 | 5.44e-32 | 122 |
| Msa0568980 | MtrunA17_Chr4g0074421 | 36.464 | 181 | 82 | 2 | 65 | 212 | 3 | 183 | 6.12e-31 | 115 |
| Msa0568980 | MtrunA17_Chr1g0149851 | 30.952 | 252 | 121 | 3 | 13 | 211 | 4 | 255 | 9.95e-30 | 119 |
| Msa0568980 | MtrunA17_Chr5g0423031 | 55.319 | 94 | 37 | 2 | 1 | 94 | 1 | 89 | 4.47e-25 | 99.8 |
| Msa0568980 | MtrunA17_Chr4g0010001 | 55.556 | 81 | 35 | 1 | 14 | 94 | 10 | 89 | 2.96e-21 | 86.7 |
| Msa0568980 | MtrunA17_Chr8g0350761 | 25.714 | 315 | 159 | 8 | 18 | 277 | 21 | 315 | 5.16e-20 | 90.5 |
| Msa0568980 | MtrunA17_Chr1g0181811 | 32.520 | 123 | 78 | 2 | 18 | 136 | 85 | 206 | 1.04e-15 | 78.2 |
| Msa0568980 | MtrunA17_Chr8g0345901 | 32.258 | 124 | 81 | 1 | 16 | 136 | 34 | 157 | 4.59e-15 | 75.9 |
| Msa0568980 | MtrunA17_Chr4g0030271 | 34.959 | 123 | 75 | 2 | 18 | 136 | 89 | 210 | 5.02e-15 | 75.9 |
| Msa0568980 | MtrunA17_Chr7g0276361 | 31.200 | 125 | 83 | 1 | 15 | 136 | 11 | 135 | 9.96e-15 | 75.1 |
| Msa0568980 | MtrunA17_Chr3g0127941 | 31.148 | 122 | 81 | 1 | 18 | 136 | 56 | 177 | 1.33e-14 | 74.7 |
| Msa0568980 | MtrunA17_Chr6g0473731 | 32.593 | 135 | 74 | 3 | 94 | 211 | 10 | 144 | 5.08e-13 | 69.3 |
| Msa0568980 | MtrunA17_Chr5g0400241 | 29.197 | 137 | 90 | 4 | 5 | 139 | 6 | 137 | 3.48e-12 | 67.0 |
| Msa0568980 | MtrunA17_Chr4g0061021 | 28.689 | 122 | 84 | 1 | 18 | 136 | 33 | 154 | 4.32e-12 | 67.0 |
| Msa0568980 | MtrunA17_Chr3g0091641 | 27.869 | 122 | 85 | 1 | 18 | 136 | 24 | 145 | 4.77e-12 | 66.6 |
| Msa0568980 | MtrunA17_Chr4g0031961 | 56.863 | 51 | 22 | 0 | 161 | 211 | 130 | 180 | 1.08e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568980 | AT2G01760.1 | 38.115 | 244 | 106 | 2 | 13 | 211 | 6 | 249 | 1.40e-48 | 167 |
| Msa0568980 | AT3G16857.1 | 35.769 | 260 | 111 | 2 | 8 | 211 | 27 | 286 | 3.12e-43 | 158 |
| Msa0568980 | AT3G16857.2 | 35.769 | 260 | 111 | 2 | 8 | 211 | 27 | 286 | 3.37e-43 | 158 |
| Msa0568980 | AT2G01760.2 | 34.191 | 272 | 106 | 3 | 13 | 211 | 6 | 277 | 7.38e-43 | 153 |
| Msa0568980 | AT1G67710.1 | 38.983 | 236 | 105 | 5 | 15 | 211 | 8 | 243 | 2.58e-41 | 151 |
| Msa0568980 | AT2G25180.1 | 36.735 | 245 | 120 | 4 | 1 | 211 | 1 | 244 | 2.29e-40 | 149 |
| Msa0568980 | AT4G31920.1 | 35.556 | 270 | 143 | 6 | 1 | 243 | 1 | 266 | 1.25e-38 | 144 |
| Msa0568980 | AT3G16857.3 | 34.259 | 216 | 86 | 2 | 52 | 211 | 1 | 216 | 9.08e-32 | 125 |
| Msa0568980 | AT2G01760.3 | 35.870 | 184 | 73 | 2 | 73 | 211 | 1 | 184 | 9.64e-31 | 118 |
| Msa0568980 | AT5G58080.1 | 31.034 | 232 | 126 | 3 | 13 | 211 | 13 | 243 | 1.30e-30 | 122 |
| Msa0568980 | AT1G49190.1 | 30.522 | 249 | 130 | 5 | 5 | 211 | 21 | 268 | 5.42e-29 | 115 |
| Msa0568980 | AT5G49240.1 | 28.352 | 261 | 138 | 3 | 3 | 220 | 27 | 281 | 7.40e-29 | 113 |
| Msa0568980 | AT1G67710.2 | 37.640 | 178 | 72 | 5 | 73 | 211 | 1 | 178 | 4.61e-26 | 108 |
| Msa0568980 | AT3G62670.1 | 31.416 | 226 | 120 | 5 | 19 | 211 | 42 | 265 | 1.36e-25 | 106 |
| Msa0568980 | AT1G49190.2 | 36.641 | 131 | 83 | 0 | 6 | 136 | 22 | 152 | 2.31e-21 | 95.1 |
| Msa0568980 | AT5G60100.2 | 34.426 | 122 | 77 | 1 | 18 | 136 | 64 | 185 | 9.56e-18 | 84.3 |
| Msa0568980 | AT5G60100.5 | 34.426 | 122 | 77 | 1 | 18 | 136 | 64 | 185 | 1.04e-17 | 84.3 |
| Msa0568980 | AT5G60100.3 | 34.426 | 122 | 77 | 1 | 18 | 136 | 64 | 185 | 1.04e-17 | 84.3 |
| Msa0568980 | AT5G60100.1 | 34.426 | 122 | 77 | 1 | 18 | 136 | 64 | 185 | 1.04e-17 | 84.3 |
| Msa0568980 | AT5G60100.7 | 34.426 | 122 | 77 | 1 | 18 | 136 | 64 | 185 | 1.12e-17 | 83.6 |
| Msa0568980 | AT5G60100.6 | 34.426 | 122 | 77 | 1 | 18 | 136 | 64 | 185 | 1.12e-17 | 83.6 |
| Msa0568980 | AT5G60100.4 | 34.426 | 122 | 77 | 1 | 18 | 136 | 64 | 185 | 1.12e-17 | 83.6 |
| Msa0568980 | AT2G46790.1 | 33.333 | 123 | 79 | 1 | 18 | 137 | 37 | 159 | 1.60e-16 | 80.5 |
| Msa0568980 | AT2G46790.3 | 33.333 | 123 | 79 | 1 | 18 | 137 | 37 | 159 | 1.71e-16 | 80.5 |
| Msa0568980 | AT5G24470.1 | 31.967 | 122 | 80 | 1 | 18 | 136 | 50 | 171 | 9.22e-16 | 78.6 |
| Msa0568980 | AT5G02810.1 | 32.520 | 123 | 78 | 2 | 18 | 136 | 78 | 199 | 2.39e-13 | 71.2 |
| Msa0568980 | AT5G61380.1 | 30.328 | 122 | 82 | 1 | 18 | 136 | 19 | 140 | 3.96e-13 | 70.5 |
| Msa0568980 | AT5G59570.2 | 55.769 | 52 | 23 | 0 | 160 | 211 | 139 | 190 | 3.06e-12 | 66.6 |
| Msa0568980 | AT5G59570.1 | 55.769 | 52 | 23 | 0 | 160 | 211 | 139 | 190 | 3.06e-12 | 66.6 |
| Msa0568980 | AT3G46640.3 | 56.863 | 51 | 22 | 0 | 161 | 211 | 143 | 193 | 9.96e-12 | 65.5 |
| Msa0568980 | AT3G46640.2 | 56.863 | 51 | 22 | 0 | 161 | 211 | 143 | 193 | 1.05e-11 | 65.5 |
| Msa0568980 | AT3G46640.1 | 56.863 | 51 | 22 | 0 | 161 | 211 | 143 | 193 | 1.05e-11 | 65.5 |
| Msa0568980 | AT5G44190.2 | 54.717 | 53 | 24 | 0 | 159 | 211 | 144 | 196 | 1.55e-11 | 65.1 |
| Msa0568980 | AT5G44190.1 | 54.717 | 53 | 24 | 0 | 159 | 211 | 144 | 196 | 1.55e-11 | 65.1 |
| Msa0568980 | AT5G07210.2 | 43.210 | 81 | 45 | 1 | 132 | 211 | 191 | 271 | 4.05e-11 | 64.3 |
| Msa0568980 | AT5G07210.1 | 43.210 | 81 | 45 | 1 | 132 | 211 | 199 | 279 | 4.08e-11 | 64.3 |
| Msa0568980 | AT2G40970.1 | 52.941 | 51 | 24 | 0 | 161 | 211 | 104 | 154 | 6.17e-11 | 62.4 |
Find 53 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTTGATTCTCGATTAA+AGG | 0.164354 | 4_1:+70616689 | None:intergenic |
| AATTGCATCGACAATTTCTA+AGG | 0.211162 | 4_1:-70616538 | Msa0568980:CDS |
| TGTTTCCGTCAAAAGTTTAA+AGG | 0.235719 | 4_1:+70617006 | None:intergenic |
| ATTGCTTTATGAATTGCTTT+TGG | 0.274624 | 4_1:+70616373 | None:intergenic |
| CAAACGGGGCTTGCGAATAT+TGG | 0.275266 | 4_1:-70616718 | Msa0568980:CDS |
| TCCAGTTACAACATGTTCTA+AGG | 0.282036 | 4_1:-70617038 | Msa0568980:intron |
| TAAAGAATAGAAAGTCAAAA+AGG | 0.285756 | 4_1:-70616166 | Msa0568980:CDS |
| ATTCTTTAGATGTGTCTCTT+TGG | 0.286927 | 4_1:+70616181 | None:intergenic |
| ACATTTCCACAACAGCATTA+AGG | 0.328612 | 4_1:+70617209 | None:intergenic |
| CATAAAGCAATGAATGTTCC+TGG | 0.339932 | 4_1:-70616361 | Msa0568980:CDS |
| AGAAATTGTCGATGCAATTC+AGG | 0.341097 | 4_1:+70616542 | None:intergenic |
| GCACAACCTCCATCGGAATA+TGG | 0.347834 | 4_1:-70615897 | None:intergenic |
| CTCTTAAATCCTCTGGGAAT+TGG | 0.352622 | 4_1:+70617260 | None:intergenic |
| GCAAGTTGCTAGCCATTTGC+AGG | 0.355161 | 4_1:-70616326 | Msa0568980:CDS |
| CTAAGGGTTGTGAATGAACT+TGG | 0.358456 | 4_1:-70616521 | Msa0568980:CDS |
| ATATACGATTCTTCTTCGTT+AGG | 0.374538 | 4_1:+70616573 | None:intergenic |
| TATACGATTCTTCTTCGTTA+GGG | 0.386785 | 4_1:+70616574 | None:intergenic |
| GAACTCAATTGTGTTTCGTT+AGG | 0.423423 | 4_1:+70616107 | None:intergenic |
| ACAAGAACTCTTAAATCCTC+TGG | 0.429240 | 4_1:+70617253 | None:intergenic |
| TCTATTCCATGCAATTATCA+AGG | 0.446387 | 4_1:-70617187 | Msa0568980:intron |
| AGAGTTGTCGTTGCATTGTA+TGG | 0.450449 | 4_1:+70616034 | None:intergenic |
| TGACAGGAATATTGATTTGT+TGG | 0.454324 | 4_1:+70616906 | None:intergenic |
| TAAATCCTCTGGGAATTGGC+TGG | 0.455635 | 4_1:+70617264 | None:intergenic |
| TGATGAAAGCTGTTGCAAAC+GGG | 0.461960 | 4_1:-70616733 | Msa0568980:CDS |
| ATAAACATAATCAAAGCAAA+AGG | 0.469172 | 4_1:-70616625 | Msa0568980:CDS |
| AAATCATATGAATCCATGTC+TGG | 0.476246 | 4_1:+70616944 | None:intergenic |
| TAAACATAATCAAAGCAAAA+GGG | 0.478480 | 4_1:-70616624 | Msa0568980:CDS |
| GTGATGAAAGCTGTTGCAAA+CGG | 0.482441 | 4_1:-70616734 | Msa0568980:CDS |
| TATATATTCTTACTGATGAC+AGG | 0.490720 | 4_1:+70616890 | None:intergenic |
| GACAGGAATATTGATTTGTT+GGG | 0.492437 | 4_1:+70616907 | None:intergenic |
| CGAAGAAGAATCGTATATCA+TGG | 0.494656 | 4_1:-70616568 | Msa0568980:CDS |
| TGATTTGTTGGGTAACATGT+CGG | 0.535639 | 4_1:+70616918 | None:intergenic |
| ATAGTGATGACGAATCATCT+TGG | 0.537739 | 4_1:+70615925 | None:intergenic |
| AGAGGATTTAAGAGTTCTTG+TGG | 0.539349 | 4_1:-70617251 | Msa0568980:CDS |
| CAAGAACTCTTAAATCCTCT+GGG | 0.542866 | 4_1:+70617254 | None:intergenic |
| CATCTTGGATCATGTAGGAC+TGG | 0.543187 | 4_1:+70615940 | None:intergenic |
| AACAAACCTTGATAATTGCA+TGG | 0.547307 | 4_1:+70617181 | None:intergenic |
| TGAAGCTCAAATGCCAGACA+TGG | 0.549847 | 4_1:-70616957 | Msa0568980:CDS |
| TGTGCAGTGATGTGTGATGA+TGG | 0.552839 | 4_1:-70616770 | Msa0568980:intron |
| AAATCCTCTGGGAATTGGCT+GGG | 0.555538 | 4_1:+70617265 | None:intergenic |
| TGATGTCCTTAATGCTGTTG+TGG | 0.557832 | 4_1:-70617215 | Msa0568980:CDS |
| ATACGAAGCACAACCTCCAT+CGG | 0.580105 | 4_1:-70615904 | Msa0568980:CDS |
| ATACGATTCTTCTTCGTTAG+GGG | 0.588904 | 4_1:+70616575 | None:intergenic |
| AATATACCATATTCCGATGG+AGG | 0.592529 | 4_1:+70615891 | None:intergenic |
| CGAATCATCTTGGATCATGT+AGG | 0.595674 | 4_1:+70615935 | None:intergenic |
| ATTGCATCGACAATTTCTAA+GGG | 0.597352 | 4_1:-70616537 | Msa0568980:CDS |
| AGAATCAAATCAAGAACATG+TGG | 0.615053 | 4_1:-70616679 | Msa0568980:CDS |
| GATGAAAGCTGTTGCAAACG+GGG | 0.621578 | 4_1:-70616732 | Msa0568980:CDS |
| AAACATAATCAAAGCAAAAG+GGG | 0.630491 | 4_1:-70616623 | Msa0568980:CDS |
| TTGAATATACCATATTCCGA+TGG | 0.640230 | 4_1:+70615888 | None:intergenic |
| AACAAAGGGCTGTGTTGATG+TGG | 0.654838 | 4_1:-70616987 | Msa0568980:CDS |
| ACATGTGGCAGTGTGTTGCA+AGG | 0.672995 | 4_1:-70616664 | Msa0568980:CDS |
| ACTTCCCAGCCAATTCCCAG+AGG | 0.715638 | 4_1:-70617269 | Msa0568980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAGAAAATAAAAATTAT+TGG | + | chr4_1:70616721-70616740 | None:intergenic | 10.0% |
| !! | AGAAAGAAAATAAAAATTAT+TGG | + | chr4_1:70616721-70616740 | None:intergenic | 10.0% |
| !!! | TTTTTTTTGTATTAATGTAG+TGG | - | chr4_1:70616895-70616914 | Msa0568980:intron | 15.0% |
| !!! | TTTTTTTTGTATTAATGTAG+TGG | - | chr4_1:70616895-70616914 | Msa0568980:intron | 15.0% |
| !! | ATAAACATAATCAAAGCAAA+AGG | - | chr4_1:70616569-70616588 | Msa0568980:CDS | 20.0% |
| !! | TAAACATAATCAAAGCAAAA+GGG | - | chr4_1:70616570-70616589 | Msa0568980:CDS | 20.0% |
| !! | TAAAGAATAGAAAGTCAAAA+AGG | - | chr4_1:70617028-70617047 | Msa0568980:CDS | 20.0% |
| !! | AAAGAATAGAAAGTCAAAAA+GGG | - | chr4_1:70617029-70617048 | Msa0568980:CDS | 20.0% |
| !! | ATAAACATAATCAAAGCAAA+AGG | - | chr4_1:70616569-70616588 | Msa0568980:CDS | 20.0% |
| !! | TAAACATAATCAAAGCAAAA+GGG | - | chr4_1:70616570-70616589 | Msa0568980:CDS | 20.0% |
| !! | TAAAGAATAGAAAGTCAAAA+AGG | - | chr4_1:70617028-70617047 | Msa0568980:CDS | 20.0% |
| !! | AAAGAATAGAAAGTCAAAAA+GGG | - | chr4_1:70617029-70617048 | Msa0568980:CDS | 20.0% |
| !! | TTTTGCCTTTAAACTTTTGA+CGG | - | chr4_1:70616183-70616202 | Msa0568980:CDS | 25.0% |
| ! | TATATATTCTTACTGATGAC+AGG | + | chr4_1:70616307-70616326 | None:intergenic | 25.0% |
| !! | TTGATTTGATTCTCGATTAA+AGG | + | chr4_1:70616508-70616527 | None:intergenic | 25.0% |
| ! | AAACATAATCAAAGCAAAAG+GGG | - | chr4_1:70616571-70616590 | Msa0568980:CDS | 25.0% |
| ! | GAAAAAGAATCTTACTATCA+AGG | + | chr4_1:70616699-70616718 | None:intergenic | 25.0% |
| !! | ATTGCTTTATGAATTGCTTT+TGG | + | chr4_1:70616824-70616843 | None:intergenic | 25.0% |
| ! | AAAAAAAACAAACCTGCAAA+TGG | + | chr4_1:70616883-70616902 | None:intergenic | 25.0% |
| ! | AAGAATAGAAAGTCAAAAAG+GGG | - | chr4_1:70617030-70617049 | Msa0568980:CDS | 25.0% |
| !! | CTGAGTTCATTAAATTTTCT+GGG | + | chr4_1:70617140-70617159 | None:intergenic | 25.0% |
| !! | TTTTGCCTTTAAACTTTTGA+CGG | - | chr4_1:70616183-70616202 | Msa0568980:CDS | 25.0% |
| ! | TATATATTCTTACTGATGAC+AGG | + | chr4_1:70616307-70616326 | None:intergenic | 25.0% |
| !! | TTGATTTGATTCTCGATTAA+AGG | + | chr4_1:70616508-70616527 | None:intergenic | 25.0% |
| ! | AAACATAATCAAAGCAAAAG+GGG | - | chr4_1:70616571-70616590 | Msa0568980:CDS | 25.0% |
| ! | GAAAAAGAATCTTACTATCA+AGG | + | chr4_1:70616699-70616718 | None:intergenic | 25.0% |
| !! | ATTGCTTTATGAATTGCTTT+TGG | + | chr4_1:70616824-70616843 | None:intergenic | 25.0% |
| ! | AAAAAAAACAAACCTGCAAA+TGG | + | chr4_1:70616883-70616902 | None:intergenic | 25.0% |
| ! | AAGAATAGAAAGTCAAAAAG+GGG | - | chr4_1:70617030-70617049 | Msa0568980:CDS | 25.0% |
| !! | CTGAGTTCATTAAATTTTCT+GGG | + | chr4_1:70617140-70617159 | None:intergenic | 25.0% |
| TCTATTCCATGCAATTATCA+AGG | - | chr4_1:70616007-70616026 | Msa0568980:CDS | 30.0% | |
| ! | AACAAACCTTGATAATTGCA+TGG | + | chr4_1:70616016-70616035 | None:intergenic | 30.0% |
| CAAAAGTTCAAGAATTTCAC+AGG | + | chr4_1:70616092-70616111 | None:intergenic | 30.0% | |
| ! | CTGTGAAATTCTTGAACTTT+TGG | - | chr4_1:70616090-70616109 | Msa0568980:CDS | 30.0% |
| TGTTTCCGTCAAAAGTTTAA+AGG | + | chr4_1:70616191-70616210 | None:intergenic | 30.0% | |
| ! | TAAACTTTTGACGGAAACAA+AGG | - | chr4_1:70616192-70616211 | Msa0568980:CDS | 30.0% |
| ! | AAACTTTTGACGGAAACAAA+GGG | - | chr4_1:70616193-70616212 | Msa0568980:CDS | 30.0% |
| AAATCATATGAATCCATGTC+TGG | + | chr4_1:70616253-70616272 | None:intergenic | 30.0% | |
| !! | GACAGGAATATTGATTTGTT+GGG | + | chr4_1:70616290-70616309 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | chr4_1:70616291-70616310 | None:intergenic | 30.0% |
| AGAATCAAATCAAGAACATG+TGG | - | chr4_1:70616515-70616534 | Msa0568980:CDS | 30.0% | |
| TATACGATTCTTCTTCGTTA+GGG | + | chr4_1:70616623-70616642 | None:intergenic | 30.0% | |
| ATATACGATTCTTCTTCGTT+AGG | + | chr4_1:70616624-70616643 | None:intergenic | 30.0% | |
| ! | AATTGCATCGACAATTTCTA+AGG | - | chr4_1:70616656-70616675 | Msa0568980:CDS | 30.0% |
| ! | ATTGCATCGACAATTTCTAA+GGG | - | chr4_1:70616657-70616676 | Msa0568980:CDS | 30.0% |
| ! | GCTTTGCCTCTAAAAAATAA+GGG | + | chr4_1:70616802-70616821 | None:intergenic | 30.0% |
| ATTCTTTAGATGTGTCTCTT+TGG | + | chr4_1:70617016-70617035 | None:intergenic | 30.0% | |
| AGAATAGAAAGTCAAAAAGG+GGG | - | chr4_1:70617031-70617050 | Msa0568980:CDS | 30.0% | |
| ! | GCTGAGTTCATTAAATTTTC+TGG | + | chr4_1:70617141-70617160 | None:intergenic | 30.0% |
| TCTATTCCATGCAATTATCA+AGG | - | chr4_1:70616007-70616026 | Msa0568980:CDS | 30.0% | |
| ! | AACAAACCTTGATAATTGCA+TGG | + | chr4_1:70616016-70616035 | None:intergenic | 30.0% |
| CAAAAGTTCAAGAATTTCAC+AGG | + | chr4_1:70616092-70616111 | None:intergenic | 30.0% | |
| ! | CTGTGAAATTCTTGAACTTT+TGG | - | chr4_1:70616090-70616109 | Msa0568980:CDS | 30.0% |
| TGTTTCCGTCAAAAGTTTAA+AGG | + | chr4_1:70616191-70616210 | None:intergenic | 30.0% | |
| ! | TAAACTTTTGACGGAAACAA+AGG | - | chr4_1:70616192-70616211 | Msa0568980:CDS | 30.0% |
| ! | AAACTTTTGACGGAAACAAA+GGG | - | chr4_1:70616193-70616212 | Msa0568980:CDS | 30.0% |
| AAATCATATGAATCCATGTC+TGG | + | chr4_1:70616253-70616272 | None:intergenic | 30.0% | |
| !! | GACAGGAATATTGATTTGTT+GGG | + | chr4_1:70616290-70616309 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | chr4_1:70616291-70616310 | None:intergenic | 30.0% |
| AGAATCAAATCAAGAACATG+TGG | - | chr4_1:70616515-70616534 | Msa0568980:CDS | 30.0% | |
| TATACGATTCTTCTTCGTTA+GGG | + | chr4_1:70616623-70616642 | None:intergenic | 30.0% | |
| ATATACGATTCTTCTTCGTT+AGG | + | chr4_1:70616624-70616643 | None:intergenic | 30.0% | |
| ! | AATTGCATCGACAATTTCTA+AGG | - | chr4_1:70616656-70616675 | Msa0568980:CDS | 30.0% |
| ! | ATTGCATCGACAATTTCTAA+GGG | - | chr4_1:70616657-70616676 | Msa0568980:CDS | 30.0% |
| ! | GCTTTGCCTCTAAAAAATAA+GGG | + | chr4_1:70616802-70616821 | None:intergenic | 30.0% |
| ATTCTTTAGATGTGTCTCTT+TGG | + | chr4_1:70617016-70617035 | None:intergenic | 30.0% | |
| AGAATAGAAAGTCAAAAAGG+GGG | - | chr4_1:70617031-70617050 | Msa0568980:CDS | 30.0% | |
| ! | GCTGAGTTCATTAAATTTTC+TGG | + | chr4_1:70617141-70617160 | None:intergenic | 30.0% |
| CAAGAACTCTTAAATCCTCT+GGG | + | chr4_1:70615943-70615962 | None:intergenic | 35.0% | |
| ACAAGAACTCTTAAATCCTC+TGG | + | chr4_1:70615944-70615963 | None:intergenic | 35.0% | |
| AGAGGATTTAAGAGTTCTTG+TGG | - | chr4_1:70615943-70615962 | Msa0568980:CDS | 35.0% | |
| ACATTTCCACAACAGCATTA+AGG | + | chr4_1:70615988-70616007 | None:intergenic | 35.0% | |
| TAGAACATGTTGTAACTGGA+AGG | + | chr4_1:70616156-70616175 | None:intergenic | 35.0% | |
| TCCAGTTACAACATGTTCTA+AGG | - | chr4_1:70616156-70616175 | Msa0568980:CDS | 35.0% | |
| !! | TGATTTGTTGGGTAACATGT+CGG | + | chr4_1:70616279-70616298 | None:intergenic | 35.0% |
| ATACGATTCTTCTTCGTTAG+GGG | + | chr4_1:70616622-70616641 | None:intergenic | 35.0% | |
| CGAAGAAGAATCGTATATCA+TGG | - | chr4_1:70616626-70616645 | Msa0568980:CDS | 35.0% | |
| AGAAATTGTCGATGCAATTC+AGG | + | chr4_1:70616655-70616674 | None:intergenic | 35.0% | |
| !!! | GACTCTCCCTTATTTTTTAG+AGG | - | chr4_1:70616793-70616812 | Msa0568980:intron | 35.0% |
| ! | GGCTTTGCCTCTAAAAAATA+AGG | + | chr4_1:70616803-70616822 | None:intergenic | 35.0% |
| CATAAAGCAATGAATGTTCC+TGG | - | chr4_1:70616833-70616852 | Msa0568980:intron | 35.0% | |
| GAACTCAATTGTGTTTCGTT+AGG | + | chr4_1:70617090-70617109 | None:intergenic | 35.0% | |
| ! | ATAGTGATGACGAATCATCT+TGG | + | chr4_1:70617272-70617291 | None:intergenic | 35.0% |
| CAAGAACTCTTAAATCCTCT+GGG | + | chr4_1:70615943-70615962 | None:intergenic | 35.0% | |
| ACAAGAACTCTTAAATCCTC+TGG | + | chr4_1:70615944-70615963 | None:intergenic | 35.0% | |
| AGAGGATTTAAGAGTTCTTG+TGG | - | chr4_1:70615943-70615962 | Msa0568980:CDS | 35.0% | |
| ACATTTCCACAACAGCATTA+AGG | + | chr4_1:70615988-70616007 | None:intergenic | 35.0% | |
| TAGAACATGTTGTAACTGGA+AGG | + | chr4_1:70616156-70616175 | None:intergenic | 35.0% | |
| TCCAGTTACAACATGTTCTA+AGG | - | chr4_1:70616156-70616175 | Msa0568980:CDS | 35.0% | |
| !! | TGATTTGTTGGGTAACATGT+CGG | + | chr4_1:70616279-70616298 | None:intergenic | 35.0% |
| ATACGATTCTTCTTCGTTAG+GGG | + | chr4_1:70616622-70616641 | None:intergenic | 35.0% | |
| CGAAGAAGAATCGTATATCA+TGG | - | chr4_1:70616626-70616645 | Msa0568980:CDS | 35.0% | |
| AGAAATTGTCGATGCAATTC+AGG | + | chr4_1:70616655-70616674 | None:intergenic | 35.0% | |
| !!! | GACTCTCCCTTATTTTTTAG+AGG | - | chr4_1:70616793-70616812 | Msa0568980:intron | 35.0% |
| ! | GGCTTTGCCTCTAAAAAATA+AGG | + | chr4_1:70616803-70616822 | None:intergenic | 35.0% |
| CATAAAGCAATGAATGTTCC+TGG | - | chr4_1:70616833-70616852 | Msa0568980:intron | 35.0% | |
| GAACTCAATTGTGTTTCGTT+AGG | + | chr4_1:70617090-70617109 | None:intergenic | 35.0% | |
| ! | ATAGTGATGACGAATCATCT+TGG | + | chr4_1:70617272-70617291 | None:intergenic | 35.0% |
| ! | CTCTTAAATCCTCTGGGAAT+TGG | + | chr4_1:70615937-70615956 | None:intergenic | 40.0% |
| TGATGTCCTTAATGCTGTTG+TGG | - | chr4_1:70615979-70615998 | Msa0568980:CDS | 40.0% | |
| GCCTTAGAACATGTTGTAAC+TGG | + | chr4_1:70616160-70616179 | None:intergenic | 40.0% | |
| GTGATGAAAGCTGTTGCAAA+CGG | - | chr4_1:70616460-70616479 | Msa0568980:intron | 40.0% | |
| TGATGAAAGCTGTTGCAAAC+GGG | - | chr4_1:70616461-70616480 | Msa0568980:intron | 40.0% | |
| CTAAGGGTTGTGAATGAACT+TGG | - | chr4_1:70616673-70616692 | Msa0568980:CDS | 40.0% | |
| ! | ACTTGCTCTTTTGTCAAACC+AGG | + | chr4_1:70616854-70616873 | None:intergenic | 40.0% |
| ATAGAAAGTCAAAAAGGGGG+CGG | - | chr4_1:70617034-70617053 | Msa0568980:CDS | 40.0% | |
| AGAGTTGTCGTTGCATTGTA+TGG | + | chr4_1:70617163-70617182 | None:intergenic | 40.0% | |
| !! | GGACTGGTCAGTAAAAATGT+TGG | + | chr4_1:70617241-70617260 | None:intergenic | 40.0% |
| CGAATCATCTTGGATCATGT+AGG | + | chr4_1:70617262-70617281 | None:intergenic | 40.0% | |
| ! | CTCTTAAATCCTCTGGGAAT+TGG | + | chr4_1:70615937-70615956 | None:intergenic | 40.0% |
| TGATGTCCTTAATGCTGTTG+TGG | - | chr4_1:70615979-70615998 | Msa0568980:CDS | 40.0% | |
| GCCTTAGAACATGTTGTAAC+TGG | + | chr4_1:70616160-70616179 | None:intergenic | 40.0% | |
| GTGATGAAAGCTGTTGCAAA+CGG | - | chr4_1:70616460-70616479 | Msa0568980:intron | 40.0% | |
| TGATGAAAGCTGTTGCAAAC+GGG | - | chr4_1:70616461-70616480 | Msa0568980:intron | 40.0% | |
| CTAAGGGTTGTGAATGAACT+TGG | - | chr4_1:70616673-70616692 | Msa0568980:CDS | 40.0% | |
| ! | ACTTGCTCTTTTGTCAAACC+AGG | + | chr4_1:70616854-70616873 | None:intergenic | 40.0% |
| ATAGAAAGTCAAAAAGGGGG+CGG | - | chr4_1:70617034-70617053 | Msa0568980:CDS | 40.0% | |
| AGAGTTGTCGTTGCATTGTA+TGG | + | chr4_1:70617163-70617182 | None:intergenic | 40.0% | |
| !! | GGACTGGTCAGTAAAAATGT+TGG | + | chr4_1:70617241-70617260 | None:intergenic | 40.0% |
| CGAATCATCTTGGATCATGT+AGG | + | chr4_1:70617262-70617281 | None:intergenic | 40.0% | |
| ! | AAATCCTCTGGGAATTGGCT+GGG | + | chr4_1:70615932-70615951 | None:intergenic | 45.0% |
| ! | TAAATCCTCTGGGAATTGGC+TGG | + | chr4_1:70615933-70615952 | None:intergenic | 45.0% |
| ! | AACAAAGGGCTGTGTTGATG+TGG | - | chr4_1:70616207-70616226 | Msa0568980:CDS | 45.0% |
| TGAAGCTCAAATGCCAGACA+TGG | - | chr4_1:70616237-70616256 | Msa0568980:intron | 45.0% | |
| TGTGCAGTGATGTGTGATGA+TGG | - | chr4_1:70616424-70616443 | Msa0568980:intron | 45.0% | |
| GATGAAAGCTGTTGCAAACG+GGG | - | chr4_1:70616462-70616481 | Msa0568980:intron | 45.0% | |
| CATCTTGGATCATGTAGGAC+TGG | + | chr4_1:70617257-70617276 | None:intergenic | 45.0% | |
| ATACGAAGCACAACCTCCAT+CGG | - | chr4_1:70617290-70617309 | Msa0568980:CDS | 45.0% | |
| ! | AAATCCTCTGGGAATTGGCT+GGG | + | chr4_1:70615932-70615951 | None:intergenic | 45.0% |
| ! | TAAATCCTCTGGGAATTGGC+TGG | + | chr4_1:70615933-70615952 | None:intergenic | 45.0% |
| ! | AACAAAGGGCTGTGTTGATG+TGG | - | chr4_1:70616207-70616226 | Msa0568980:CDS | 45.0% |
| TGAAGCTCAAATGCCAGACA+TGG | - | chr4_1:70616237-70616256 | Msa0568980:intron | 45.0% | |
| TGTGCAGTGATGTGTGATGA+TGG | - | chr4_1:70616424-70616443 | Msa0568980:intron | 45.0% | |
| GATGAAAGCTGTTGCAAACG+GGG | - | chr4_1:70616462-70616481 | Msa0568980:intron | 45.0% | |
| CATCTTGGATCATGTAGGAC+TGG | + | chr4_1:70617257-70617276 | None:intergenic | 45.0% | |
| ATACGAAGCACAACCTCCAT+CGG | - | chr4_1:70617290-70617309 | Msa0568980:CDS | 45.0% | |
| CAAACGGGGCTTGCGAATAT+TGG | - | chr4_1:70616476-70616495 | Msa0568980:intron | 50.0% | |
| ACATGTGGCAGTGTGTTGCA+AGG | - | chr4_1:70616530-70616549 | Msa0568980:CDS | 50.0% | |
| GCAAGTTGCTAGCCATTTGC+AGG | - | chr4_1:70616868-70616887 | Msa0568980:intron | 50.0% | |
| CAAACGGGGCTTGCGAATAT+TGG | - | chr4_1:70616476-70616495 | Msa0568980:intron | 50.0% | |
| ACATGTGGCAGTGTGTTGCA+AGG | - | chr4_1:70616530-70616549 | Msa0568980:CDS | 50.0% | |
| GCAAGTTGCTAGCCATTTGC+AGG | - | chr4_1:70616868-70616887 | Msa0568980:intron | 50.0% | |
| ACTTCCCAGCCAATTCCCAG+AGG | - | chr4_1:70615925-70615944 | Msa0568980:CDS | 55.0% | |
| ACTTCCCAGCCAATTCCCAG+AGG | - | chr4_1:70615925-70615944 | Msa0568980:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 70615899 | 70617317 | 70615899 | ID=Msa0568980;Name=Msa0568980 |
| chr4_1 | mRNA | 70615899 | 70617317 | 70615899 | ID=Msa0568980-mRNA-1;Parent=Msa0568980;Name=Msa0568980-mRNA-1;_AED=0.16;_eAED=0.19;_QI=0|0|0|1|0.75|0.6|5|0|331 |
| chr4_1 | exon | 70617188 | 70617317 | 70617188 | ID=Msa0568980-mRNA-1:exon:23874;Parent=Msa0568980-mRNA-1 |
| chr4_1 | exon | 70616903 | 70617055 | 70616903 | ID=Msa0568980-mRNA-1:exon:23873;Parent=Msa0568980-mRNA-1 |
| chr4_1 | exon | 70616513 | 70616785 | 70616513 | ID=Msa0568980-mRNA-1:exon:23872;Parent=Msa0568980-mRNA-1 |
| chr4_1 | exon | 70616300 | 70616403 | 70616300 | ID=Msa0568980-mRNA-1:exon:23871;Parent=Msa0568980-mRNA-1 |
| chr4_1 | exon | 70615899 | 70616231 | 70615899 | ID=Msa0568980-mRNA-1:exon:23870;Parent=Msa0568980-mRNA-1 |
| chr4_1 | CDS | 70617188 | 70617317 | 70617188 | ID=Msa0568980-mRNA-1:cds;Parent=Msa0568980-mRNA-1 |
| chr4_1 | CDS | 70616903 | 70617055 | 70616903 | ID=Msa0568980-mRNA-1:cds;Parent=Msa0568980-mRNA-1 |
| chr4_1 | CDS | 70616513 | 70616785 | 70616513 | ID=Msa0568980-mRNA-1:cds;Parent=Msa0568980-mRNA-1 |
| chr4_1 | CDS | 70616300 | 70616403 | 70616300 | ID=Msa0568980-mRNA-1:cds;Parent=Msa0568980-mRNA-1 |
| chr4_1 | CDS | 70615899 | 70616231 | 70615899 | ID=Msa0568980-mRNA-1:cds;Parent=Msa0568980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
