Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569070 | XP_024627548.1 | 93.609 | 266 | 14 | 2 | 1 | 264 | 1 | 265 | 7.05e-160 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569070 | sp|O81313|IND_ARATH | 82.022 | 89 | 16 | 0 | 87 | 175 | 87 | 175 | 2.14e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569070 | A0A396GSG3 | 93.609 | 266 | 14 | 2 | 1 | 264 | 1 | 265 | 3.37e-160 | 454 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0569070 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569070 | MtrunA17_Chr8g0384141 | 93.609 | 266 | 14 | 2 | 1 | 264 | 1 | 265 | 6.48e-164 | 454 |
| Msa0569070 | MtrunA17_Chr3g0134001 | 73.958 | 96 | 25 | 0 | 80 | 175 | 139 | 234 | 4.76e-47 | 157 |
| Msa0569070 | MtrunA17_Chr8g0375121 | 68.571 | 105 | 33 | 0 | 80 | 184 | 100 | 204 | 4.40e-38 | 134 |
| Msa0569070 | MtrunA17_Chr5g0402161 | 68.627 | 102 | 32 | 0 | 80 | 181 | 105 | 206 | 2.20e-37 | 132 |
| Msa0569070 | MtrunA17_Chr8g0341421 | 61.905 | 105 | 33 | 3 | 78 | 176 | 289 | 392 | 7.17e-29 | 113 |
| Msa0569070 | MtrunA17_Chr2g0330641 | 60.606 | 99 | 38 | 1 | 79 | 176 | 256 | 354 | 1.03e-26 | 107 |
| Msa0569070 | MtrunA17_Chr7g0243041 | 67.857 | 56 | 18 | 0 | 118 | 173 | 32 | 87 | 1.24e-20 | 85.5 |
| Msa0569070 | MtrunA17_Chr5g0435021 | 41.085 | 129 | 64 | 3 | 78 | 194 | 182 | 310 | 6.64e-20 | 87.0 |
| Msa0569070 | MtrunA17_Chr1g0152651 | 66.071 | 56 | 19 | 0 | 121 | 176 | 283 | 338 | 8.67e-19 | 84.7 |
| Msa0569070 | MtrunA17_Chr5g0393721 | 66.071 | 56 | 19 | 0 | 121 | 176 | 233 | 288 | 8.77e-19 | 84.3 |
| Msa0569070 | MtrunA17_Chr1g0207301 | 55.072 | 69 | 31 | 0 | 108 | 176 | 284 | 352 | 1.58e-18 | 84.0 |
| Msa0569070 | MtrunA17_Chr1g0207311 | 66.071 | 56 | 19 | 0 | 121 | 176 | 205 | 260 | 2.95e-18 | 82.4 |
| Msa0569070 | MtrunA17_Chr3g0134741 | 60.606 | 66 | 25 | 1 | 112 | 176 | 228 | 293 | 7.27e-18 | 81.6 |
| Msa0569070 | MtrunA17_Chr4g0074161 | 40.179 | 112 | 62 | 1 | 63 | 174 | 162 | 268 | 1.46e-15 | 75.9 |
| Msa0569070 | MtrunA17_Chr1g0179061 | 59.259 | 54 | 22 | 0 | 122 | 175 | 180 | 233 | 2.77e-14 | 70.5 |
| Msa0569070 | MtrunA17_Chr1g0190731 | 50.000 | 70 | 35 | 0 | 105 | 174 | 186 | 255 | 1.28e-13 | 69.7 |
| Msa0569070 | MtrunA17_Chr2g0311101 | 44.737 | 76 | 40 | 1 | 102 | 175 | 157 | 232 | 2.58e-13 | 68.6 |
| Msa0569070 | MtrunA17_Chr2g0323091 | 52.632 | 57 | 27 | 0 | 122 | 178 | 146 | 202 | 3.77e-13 | 67.8 |
| Msa0569070 | MtrunA17_Chr4g0014771 | 50.000 | 70 | 30 | 2 | 122 | 190 | 128 | 193 | 2.16e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569070 | AT4G00120.1 | 82.022 | 89 | 16 | 0 | 87 | 175 | 87 | 175 | 2.17e-46 | 154 |
| Msa0569070 | AT5G09750.1 | 83.178 | 107 | 11 | 1 | 85 | 184 | 92 | 198 | 3.18e-46 | 154 |
| Msa0569070 | AT3G21330.1 | 52.985 | 134 | 55 | 1 | 76 | 209 | 233 | 358 | 4.36e-38 | 137 |
| Msa0569070 | AT5G67060.2 | 75.824 | 91 | 22 | 0 | 85 | 175 | 83 | 173 | 3.47e-36 | 129 |
| Msa0569070 | AT5G67060.1 | 75.824 | 91 | 22 | 0 | 85 | 175 | 95 | 185 | 5.32e-36 | 129 |
| Msa0569070 | AT3G50330.1 | 74.725 | 91 | 23 | 0 | 85 | 175 | 92 | 182 | 1.89e-35 | 127 |
| Msa0569070 | AT5G01305.1 | 67.742 | 62 | 20 | 0 | 110 | 171 | 35 | 96 | 5.58e-21 | 87.4 |
| Msa0569070 | AT2G14760.1 | 67.857 | 56 | 18 | 0 | 121 | 176 | 246 | 301 | 7.73e-19 | 84.7 |
| Msa0569070 | AT4G33880.1 | 67.857 | 56 | 18 | 0 | 121 | 176 | 275 | 330 | 9.19e-19 | 84.7 |
| Msa0569070 | AT5G43175.1 | 47.500 | 80 | 42 | 0 | 97 | 176 | 117 | 196 | 9.66e-19 | 82.8 |
| Msa0569070 | AT1G27740.1 | 50.704 | 71 | 35 | 0 | 106 | 176 | 161 | 231 | 1.61e-17 | 80.1 |
| Msa0569070 | AT1G66470.1 | 64.815 | 54 | 19 | 0 | 121 | 174 | 204 | 257 | 1.80e-17 | 80.5 |
| Msa0569070 | AT5G37800.1 | 52.778 | 72 | 26 | 1 | 103 | 174 | 200 | 263 | 1.95e-17 | 80.5 |
| Msa0569070 | AT4G30980.1 | 59.091 | 66 | 26 | 1 | 110 | 174 | 127 | 192 | 2.24e-16 | 77.8 |
| Msa0569070 | AT4G30980.2 | 59.091 | 66 | 26 | 1 | 110 | 174 | 175 | 240 | 4.16e-16 | 77.4 |
| Msa0569070 | AT2G24260.2 | 62.963 | 54 | 20 | 0 | 121 | 174 | 44 | 97 | 5.30e-16 | 75.9 |
| Msa0569070 | AT2G24260.1 | 49.333 | 75 | 32 | 1 | 106 | 174 | 126 | 200 | 1.04e-15 | 76.3 |
| Msa0569070 | AT2G14760.3 | 55.072 | 69 | 18 | 1 | 121 | 176 | 246 | 314 | 1.60e-15 | 75.5 |
| Msa0569070 | AT5G58010.1 | 52.113 | 71 | 33 | 1 | 105 | 174 | 91 | 161 | 5.33e-15 | 73.6 |
Find 54 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGAATTCTTCTGGAATT+TGG | 0.166878 | 4_1:+70894186 | Msa0569070:CDS |
| ATGCACTGCTAGTATTATTT+TGG | 0.189952 | 4_1:-70894082 | None:intergenic |
| GGTTCACTCAGTGACATATT+AGG | 0.250977 | 4_1:+70894260 | Msa0569070:CDS |
| TTGTTATTGTCTCCTTCTTC+TGG | 0.266342 | 4_1:+70894680 | Msa0569070:CDS |
| TGTTCCTGGTGGAACTAAAA+TGG | 0.289003 | 4_1:+70894502 | Msa0569070:CDS |
| CAAGTTCCTATGAATTCTTC+TGG | 0.298023 | 4_1:+70894179 | Msa0569070:CDS |
| ATCATGCTGTTGTAGCTATT+TGG | 0.316175 | 4_1:-70894212 | None:intergenic |
| CTTCTTCTGGTTGTGACGTC+TGG | 0.336110 | 4_1:+70894693 | Msa0569070:CDS |
| GTGGAAGTGAGTAGTAAATT+TGG | 0.351622 | 4_1:-70894725 | None:intergenic |
| ATTCGAACGTTTCTTCGCTT+TGG | 0.353088 | 4_1:-70894401 | None:intergenic |
| TGTCTAGCTGCAACACTTTG+TGG | 0.381712 | 4_1:-70894434 | None:intergenic |
| ATCCTTCAAAGACTTGTTCC+TGG | 0.399593 | 4_1:+70894488 | Msa0569070:CDS |
| GAAGAACAAGAAGAAGAGTT+AGG | 0.401481 | 4_1:+70894305 | Msa0569070:CDS |
| AGAAGAGTTAGGAGCTATGA+AGG | 0.405429 | 4_1:+70894316 | Msa0569070:CDS |
| GTTCACTCAGTGACATATTA+GGG | 0.414540 | 4_1:+70894261 | Msa0569070:CDS |
| GATCTTGTTGGAGAATAATA+CGG | 0.432514 | 4_1:-70894151 | None:intergenic |
| TCCGGCGTCAAATTGAATTC+CGG | 0.435839 | 4_1:-70894774 | None:intergenic |
| AGTAGTAAATTTGGTGCAAA+AGG | 0.442540 | 4_1:-70894716 | None:intergenic |
| GTTCTTCTACATCTTCGATT+CGG | 0.446833 | 4_1:-70894289 | None:intergenic |
| CAAATTCCAGAAGAATTCAT+AGG | 0.451806 | 4_1:-70894185 | None:intergenic |
| CAGAAGAATTCATAGGAACT+TGG | 0.471897 | 4_1:-70894178 | None:intergenic |
| CACCAGGAACAAGTCTTTGA+AGG | 0.481487 | 4_1:-70894490 | None:intergenic |
| GAACTTGGTGGTGATCTTGT+TGG | 0.483925 | 4_1:-70894163 | None:intergenic |
| CTTCTACATCTTCGATTCGG+TGG | 0.493447 | 4_1:-70894286 | None:intergenic |
| CAAGATTGCAGCTATGCAAC+CGG | 0.495861 | 4_1:+70894349 | Msa0569070:CDS |
| GCACCACCACCACCTTCATC+AGG | 0.499844 | 4_1:+70894239 | Msa0569070:CDS |
| GTCCACTGTGGCAGCTGTTG+TGG | 0.509617 | 4_1:-70894744 | None:intergenic |
| CAGACGTCACAACCAGAAGA+AGG | 0.532660 | 4_1:-70894692 | None:intergenic |
| TAGCTACAACAGCATGATCA+TGG | 0.539866 | 4_1:+70894217 | Msa0569070:CDS |
| ATGCTGTTGTAGCTATTTGG+TGG | 0.542016 | 4_1:-70894209 | None:intergenic |
| GAACCTGATGAAGGTGGTGG+TGG | 0.552409 | 4_1:-70894242 | None:intergenic |
| ATGAACATGTGAATGTCCTC+CGG | 0.556908 | 4_1:-70894792 | None:intergenic |
| CAAGAACTTAACATAACGAA+TGG | 0.583966 | 4_1:-70894549 | None:intergenic |
| GCCACAGTGGACTTACCCGC+CGG | 0.587259 | 4_1:+70894755 | Msa0569070:CDS |
| TCACATGTTCATGCTTGTGA+AGG | 0.591006 | 4_1:+70894803 | Msa0569070:CDS |
| AAGAATTCATAGGAACTTGG+TGG | 0.592411 | 4_1:-70894175 | None:intergenic |
| ACTCACTAATTACCTCATGA+TGG | 0.592814 | 4_1:-70894841 | None:intergenic |
| GGAATTCAATTTGACGCCGG+AGG | 0.597336 | 4_1:+70894776 | Msa0569070:CDS |
| GACAATAACAAAGCACTAGG+AGG | 0.606861 | 4_1:-70894668 | None:intergenic |
| GGAGACAATAACAAAGCACT+AGG | 0.609214 | 4_1:-70894671 | None:intergenic |
| GCAGTGCATTCACAAGCACT+TGG | 0.610450 | 4_1:+70894096 | Msa0569070:CDS |
| GCCGGAATTCAATTTGACGC+CGG | 0.611764 | 4_1:+70894773 | Msa0569070:CDS |
| GGCGTCAAATTGAATTCCGG+CGG | 0.614451 | 4_1:-70894771 | None:intergenic |
| CTTCAAAGACTTGTTCCTGG+TGG | 0.627271 | 4_1:+70894491 | Msa0569070:CDS |
| GCGTCAAATTGAATTCCGGC+GGG | 0.629380 | 4_1:-70894770 | None:intergenic |
| GTTGCTGGGTCGATATCCAC+CGG | 0.629556 | 4_1:-70894368 | None:intergenic |
| ATCAAGCTTTAACCATCATG+AGG | 0.658321 | 4_1:+70894829 | Msa0569070:CDS |
| TTAATGCATTGTGATGAAAG+TGG | 0.662271 | 4_1:-70894638 | None:intergenic |
| TCACTGAGTGAACCTGATGA+AGG | 0.669394 | 4_1:-70894251 | None:intergenic |
| GATTGCAGCTATGCAACCGG+TGG | 0.671341 | 4_1:+70894352 | Msa0569070:CDS |
| TTCCACAACAGCTGCCACAG+TGG | 0.676021 | 4_1:+70894742 | Msa0569070:CDS |
| AGTGAACCTGATGAAGGTGG+TGG | 0.679836 | 4_1:-70894245 | None:intergenic |
| CTGAGTGAACCTGATGAAGG+TGG | 0.711599 | 4_1:-70894248 | None:intergenic |
| TCCGGCGGGTAAGTCCACTG+TGG | 0.807057 | 4_1:-70894756 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGCACTGCTAGTATTATTT+TGG | - | chr4_1:70894085-70894104 | None:intergenic | 30.0% |
| CACTTGGAATCTTGAAAAAA+TGG | + | chr4_1:70894112-70894131 | Msa0569070:CDS | 30.0% | |
| GATCTTGTTGGAGAATAATA+CGG | - | chr4_1:70894154-70894173 | None:intergenic | 30.0% | |
| CAAATTCCAGAAGAATTCAT+AGG | - | chr4_1:70894188-70894207 | None:intergenic | 30.0% | |
| !! | CTATGAATTCTTCTGGAATT+TGG | + | chr4_1:70894186-70894205 | Msa0569070:CDS | 30.0% |
| CAAGAACTTAACATAACGAA+TGG | - | chr4_1:70894552-70894571 | None:intergenic | 30.0% | |
| !!! | TGTTGTTGTTGTTGATTTTG+AGG | - | chr4_1:70894605-70894624 | None:intergenic | 30.0% |
| TTAATGCATTGTGATGAAAG+TGG | - | chr4_1:70894641-70894660 | None:intergenic | 30.0% | |
| !! | AGTAGTAAATTTGGTGCAAA+AGG | - | chr4_1:70894719-70894738 | None:intergenic | 30.0% |
| ! | ATGCACTGCTAGTATTATTT+TGG | - | chr4_1:70894085-70894104 | None:intergenic | 30.0% |
| CACTTGGAATCTTGAAAAAA+TGG | + | chr4_1:70894112-70894131 | Msa0569070:CDS | 30.0% | |
| GATCTTGTTGGAGAATAATA+CGG | - | chr4_1:70894154-70894173 | None:intergenic | 30.0% | |
| CAAATTCCAGAAGAATTCAT+AGG | - | chr4_1:70894188-70894207 | None:intergenic | 30.0% | |
| !! | CTATGAATTCTTCTGGAATT+TGG | + | chr4_1:70894186-70894205 | Msa0569070:CDS | 30.0% |
| CAAGAACTTAACATAACGAA+TGG | - | chr4_1:70894552-70894571 | None:intergenic | 30.0% | |
| !!! | TGTTGTTGTTGTTGATTTTG+AGG | - | chr4_1:70894605-70894624 | None:intergenic | 30.0% |
| TTAATGCATTGTGATGAAAG+TGG | - | chr4_1:70894641-70894660 | None:intergenic | 30.0% | |
| !! | AGTAGTAAATTTGGTGCAAA+AGG | - | chr4_1:70894719-70894738 | None:intergenic | 30.0% |
| AAGAATTCATAGGAACTTGG+TGG | - | chr4_1:70894178-70894197 | None:intergenic | 35.0% | |
| CAGAAGAATTCATAGGAACT+TGG | - | chr4_1:70894181-70894200 | None:intergenic | 35.0% | |
| CAAGTTCCTATGAATTCTTC+TGG | + | chr4_1:70894179-70894198 | Msa0569070:CDS | 35.0% | |
| ATCATGCTGTTGTAGCTATT+TGG | - | chr4_1:70894215-70894234 | None:intergenic | 35.0% | |
| GTTCACTCAGTGACATATTA+GGG | + | chr4_1:70894261-70894280 | Msa0569070:CDS | 35.0% | |
| GTTCTTCTACATCTTCGATT+CGG | - | chr4_1:70894292-70894311 | None:intergenic | 35.0% | |
| GAAGAACAAGAAGAAGAGTT+AGG | + | chr4_1:70894305-70894324 | Msa0569070:CDS | 35.0% | |
| !!! | TTGTTGTTGATTTTGAGGAG+TGG | - | chr4_1:70894600-70894619 | None:intergenic | 35.0% |
| ! | TTGTTATTGTCTCCTTCTTC+TGG | + | chr4_1:70894680-70894699 | Msa0569070:CDS | 35.0% |
| GTGGAAGTGAGTAGTAAATT+TGG | - | chr4_1:70894728-70894747 | None:intergenic | 35.0% | |
| ! | ATCAAGCTTTAACCATCATG+AGG | + | chr4_1:70894829-70894848 | Msa0569070:CDS | 35.0% |
| ACTCACTAATTACCTCATGA+TGG | - | chr4_1:70894844-70894863 | None:intergenic | 35.0% | |
| AAGAATTCATAGGAACTTGG+TGG | - | chr4_1:70894178-70894197 | None:intergenic | 35.0% | |
| CAGAAGAATTCATAGGAACT+TGG | - | chr4_1:70894181-70894200 | None:intergenic | 35.0% | |
| CAAGTTCCTATGAATTCTTC+TGG | + | chr4_1:70894179-70894198 | Msa0569070:CDS | 35.0% | |
| ATCATGCTGTTGTAGCTATT+TGG | - | chr4_1:70894215-70894234 | None:intergenic | 35.0% | |
| GTTCACTCAGTGACATATTA+GGG | + | chr4_1:70894261-70894280 | Msa0569070:CDS | 35.0% | |
| GTTCTTCTACATCTTCGATT+CGG | - | chr4_1:70894292-70894311 | None:intergenic | 35.0% | |
| GAAGAACAAGAAGAAGAGTT+AGG | + | chr4_1:70894305-70894324 | Msa0569070:CDS | 35.0% | |
| !!! | TTGTTGTTGATTTTGAGGAG+TGG | - | chr4_1:70894600-70894619 | None:intergenic | 35.0% |
| ! | TTGTTATTGTCTCCTTCTTC+TGG | + | chr4_1:70894680-70894699 | Msa0569070:CDS | 35.0% |
| GTGGAAGTGAGTAGTAAATT+TGG | - | chr4_1:70894728-70894747 | None:intergenic | 35.0% | |
| ! | ATCAAGCTTTAACCATCATG+AGG | + | chr4_1:70894829-70894848 | Msa0569070:CDS | 35.0% |
| ACTCACTAATTACCTCATGA+TGG | - | chr4_1:70894844-70894863 | None:intergenic | 35.0% | |
| ATGCTGTTGTAGCTATTTGG+TGG | - | chr4_1:70894212-70894231 | None:intergenic | 40.0% | |
| TAGCTACAACAGCATGATCA+TGG | + | chr4_1:70894217-70894236 | Msa0569070:CDS | 40.0% | |
| GGTTCACTCAGTGACATATT+AGG | + | chr4_1:70894260-70894279 | Msa0569070:CDS | 40.0% | |
| AGAAGAGTTAGGAGCTATGA+AGG | + | chr4_1:70894316-70894335 | Msa0569070:CDS | 40.0% | |
| !! | TTGGTTTTCGAATCGTTGCT+GGG | - | chr4_1:70894385-70894404 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTCGAATCGTTGC+TGG | - | chr4_1:70894386-70894405 | None:intergenic | 40.0% |
| ATTCGAACGTTTCTTCGCTT+TGG | - | chr4_1:70894404-70894423 | None:intergenic | 40.0% | |
| ! | ATCCTTCAAAGACTTGTTCC+TGG | + | chr4_1:70894488-70894507 | Msa0569070:CDS | 40.0% |
| TGTTCCTGGTGGAACTAAAA+TGG | + | chr4_1:70894502-70894521 | Msa0569070:CDS | 40.0% | |
| !!! | GTATCCATTTTAGTTCCACC+AGG | - | chr4_1:70894509-70894528 | None:intergenic | 40.0% |
| ! | GACAATAACAAAGCACTAGG+AGG | - | chr4_1:70894671-70894690 | None:intergenic | 40.0% |
| ! | GGAGACAATAACAAAGCACT+AGG | - | chr4_1:70894674-70894693 | None:intergenic | 40.0% |
| ATGAACATGTGAATGTCCTC+CGG | - | chr4_1:70894795-70894814 | None:intergenic | 40.0% | |
| TCACATGTTCATGCTTGTGA+AGG | + | chr4_1:70894803-70894822 | Msa0569070:CDS | 40.0% | |
| ATGCTGTTGTAGCTATTTGG+TGG | - | chr4_1:70894212-70894231 | None:intergenic | 40.0% | |
| TAGCTACAACAGCATGATCA+TGG | + | chr4_1:70894217-70894236 | Msa0569070:CDS | 40.0% | |
| GGTTCACTCAGTGACATATT+AGG | + | chr4_1:70894260-70894279 | Msa0569070:CDS | 40.0% | |
| AGAAGAGTTAGGAGCTATGA+AGG | + | chr4_1:70894316-70894335 | Msa0569070:CDS | 40.0% | |
| !! | TTGGTTTTCGAATCGTTGCT+GGG | - | chr4_1:70894385-70894404 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTCGAATCGTTGC+TGG | - | chr4_1:70894386-70894405 | None:intergenic | 40.0% |
| ATTCGAACGTTTCTTCGCTT+TGG | - | chr4_1:70894404-70894423 | None:intergenic | 40.0% | |
| ! | ATCCTTCAAAGACTTGTTCC+TGG | + | chr4_1:70894488-70894507 | Msa0569070:CDS | 40.0% |
| TGTTCCTGGTGGAACTAAAA+TGG | + | chr4_1:70894502-70894521 | Msa0569070:CDS | 40.0% | |
| !!! | GTATCCATTTTAGTTCCACC+AGG | - | chr4_1:70894509-70894528 | None:intergenic | 40.0% |
| ! | GACAATAACAAAGCACTAGG+AGG | - | chr4_1:70894671-70894690 | None:intergenic | 40.0% |
| ! | GGAGACAATAACAAAGCACT+AGG | - | chr4_1:70894674-70894693 | None:intergenic | 40.0% |
| ATGAACATGTGAATGTCCTC+CGG | - | chr4_1:70894795-70894814 | None:intergenic | 40.0% | |
| TCACATGTTCATGCTTGTGA+AGG | + | chr4_1:70894803-70894822 | Msa0569070:CDS | 40.0% | |
| !! | GAACTTGGTGGTGATCTTGT+TGG | - | chr4_1:70894166-70894185 | None:intergenic | 45.0% |
| TCACTGAGTGAACCTGATGA+AGG | - | chr4_1:70894254-70894273 | None:intergenic | 45.0% | |
| !! | CTTCTACATCTTCGATTCGG+TGG | - | chr4_1:70894289-70894308 | None:intergenic | 45.0% |
| CAAGATTGCAGCTATGCAAC+CGG | + | chr4_1:70894349-70894368 | Msa0569070:CDS | 45.0% | |
| TGTCTAGCTGCAACACTTTG+TGG | - | chr4_1:70894437-70894456 | None:intergenic | 45.0% | |
| CACCAGGAACAAGTCTTTGA+AGG | - | chr4_1:70894493-70894512 | None:intergenic | 45.0% | |
| ! | CTTCAAAGACTTGTTCCTGG+TGG | + | chr4_1:70894491-70894510 | Msa0569070:CDS | 45.0% |
| TCCGGCGTCAAATTGAATTC+CGG | - | chr4_1:70894777-70894796 | None:intergenic | 45.0% | |
| !! | GAACTTGGTGGTGATCTTGT+TGG | - | chr4_1:70894166-70894185 | None:intergenic | 45.0% |
| TCACTGAGTGAACCTGATGA+AGG | - | chr4_1:70894254-70894273 | None:intergenic | 45.0% | |
| !! | CTTCTACATCTTCGATTCGG+TGG | - | chr4_1:70894289-70894308 | None:intergenic | 45.0% |
| CAAGATTGCAGCTATGCAAC+CGG | + | chr4_1:70894349-70894368 | Msa0569070:CDS | 45.0% | |
| TGTCTAGCTGCAACACTTTG+TGG | - | chr4_1:70894437-70894456 | None:intergenic | 45.0% | |
| CACCAGGAACAAGTCTTTGA+AGG | - | chr4_1:70894493-70894512 | None:intergenic | 45.0% | |
| ! | CTTCAAAGACTTGTTCCTGG+TGG | + | chr4_1:70894491-70894510 | Msa0569070:CDS | 45.0% |
| TCCGGCGTCAAATTGAATTC+CGG | - | chr4_1:70894777-70894796 | None:intergenic | 45.0% | |
| GCAGTGCATTCACAAGCACT+TGG | + | chr4_1:70894096-70894115 | Msa0569070:CDS | 50.0% | |
| AGTGAACCTGATGAAGGTGG+TGG | - | chr4_1:70894248-70894267 | None:intergenic | 50.0% | |
| CTGAGTGAACCTGATGAAGG+TGG | - | chr4_1:70894251-70894270 | None:intergenic | 50.0% | |
| CAGACGTCACAACCAGAAGA+AGG | - | chr4_1:70894695-70894714 | None:intergenic | 50.0% | |
| ! | CTTCTTCTGGTTGTGACGTC+TGG | + | chr4_1:70894693-70894712 | Msa0569070:CDS | 50.0% |
| GCGTCAAATTGAATTCCGGC+GGG | - | chr4_1:70894773-70894792 | None:intergenic | 50.0% | |
| GGCGTCAAATTGAATTCCGG+CGG | - | chr4_1:70894774-70894793 | None:intergenic | 50.0% | |
| GCCGGAATTCAATTTGACGC+CGG | + | chr4_1:70894773-70894792 | Msa0569070:CDS | 50.0% | |
| GGAATTCAATTTGACGCCGG+AGG | + | chr4_1:70894776-70894795 | Msa0569070:CDS | 50.0% | |
| GCAGTGCATTCACAAGCACT+TGG | + | chr4_1:70894096-70894115 | Msa0569070:CDS | 50.0% | |
| AGTGAACCTGATGAAGGTGG+TGG | - | chr4_1:70894248-70894267 | None:intergenic | 50.0% | |
| CTGAGTGAACCTGATGAAGG+TGG | - | chr4_1:70894251-70894270 | None:intergenic | 50.0% | |
| CAGACGTCACAACCAGAAGA+AGG | - | chr4_1:70894695-70894714 | None:intergenic | 50.0% | |
| ! | CTTCTTCTGGTTGTGACGTC+TGG | + | chr4_1:70894693-70894712 | Msa0569070:CDS | 50.0% |
| GCGTCAAATTGAATTCCGGC+GGG | - | chr4_1:70894773-70894792 | None:intergenic | 50.0% | |
| GGCGTCAAATTGAATTCCGG+CGG | - | chr4_1:70894774-70894793 | None:intergenic | 50.0% | |
| GCCGGAATTCAATTTGACGC+CGG | + | chr4_1:70894773-70894792 | Msa0569070:CDS | 50.0% | |
| GGAATTCAATTTGACGCCGG+AGG | + | chr4_1:70894776-70894795 | Msa0569070:CDS | 50.0% | |
| ! | GAACCTGATGAAGGTGGTGG+TGG | - | chr4_1:70894245-70894264 | None:intergenic | 55.0% |
| GATTGCAGCTATGCAACCGG+TGG | + | chr4_1:70894352-70894371 | Msa0569070:CDS | 55.0% | |
| GTTGCTGGGTCGATATCCAC+CGG | - | chr4_1:70894371-70894390 | None:intergenic | 55.0% | |
| TTCCACAACAGCTGCCACAG+TGG | + | chr4_1:70894742-70894761 | Msa0569070:CDS | 55.0% | |
| ! | GAACCTGATGAAGGTGGTGG+TGG | - | chr4_1:70894245-70894264 | None:intergenic | 55.0% |
| GATTGCAGCTATGCAACCGG+TGG | + | chr4_1:70894352-70894371 | Msa0569070:CDS | 55.0% | |
| GTTGCTGGGTCGATATCCAC+CGG | - | chr4_1:70894371-70894390 | None:intergenic | 55.0% | |
| TTCCACAACAGCTGCCACAG+TGG | + | chr4_1:70894742-70894761 | Msa0569070:CDS | 55.0% | |
| GCACCACCACCACCTTCATC+AGG | + | chr4_1:70894239-70894258 | Msa0569070:CDS | 60.0% | |
| GTCCACTGTGGCAGCTGTTG+TGG | - | chr4_1:70894747-70894766 | None:intergenic | 60.0% | |
| GCACCACCACCACCTTCATC+AGG | + | chr4_1:70894239-70894258 | Msa0569070:CDS | 60.0% | |
| GTCCACTGTGGCAGCTGTTG+TGG | - | chr4_1:70894747-70894766 | None:intergenic | 60.0% | |
| ! | GCCACAGTGGACTTACCCGC+CGG | + | chr4_1:70894755-70894774 | Msa0569070:CDS | 65.0% |
| TCCGGCGGGTAAGTCCACTG+TGG | - | chr4_1:70894759-70894778 | None:intergenic | 65.0% | |
| ! | GCCACAGTGGACTTACCCGC+CGG | + | chr4_1:70894755-70894774 | Msa0569070:CDS | 65.0% |
| TCCGGCGGGTAAGTCCACTG+TGG | - | chr4_1:70894759-70894778 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 70894071 | 70894865 | 70894071 | ID=Msa0569070;Name=Msa0569070 |
| chr4_1 | mRNA | 70894071 | 70894865 | 70894071 | ID=Msa0569070-mRNA-1;Parent=Msa0569070;Name=Msa0569070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|264 |
| chr4_1 | exon | 70894071 | 70894865 | 70894071 | ID=Msa0569070-mRNA-1:exon:23906;Parent=Msa0569070-mRNA-1 |
| chr4_1 | CDS | 70894071 | 70894865 | 70894071 | ID=Msa0569070-mRNA-1:cds;Parent=Msa0569070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
